CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 815

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S815R815RsynagGagA169714310.84325324005-24007
S815R815RsynAggCgg16972460.14496224005-24007
S815R815RsynAgGCgT1697190.011196224005-24007
S815R815RsynAgGCgA169710.00058927524005-24007
S815R815KnonsynaGgaAg186186124005-24007
S815R815deldelAGG---9393124005-24007
S815R815SnonsynagGagT40310.77524005-24007
S815R815SnonsynagGagC4080.224005-24007
S815R815SnonsynAGGTCA4010.02524005-24007
S815R815MnonsynaGgaTg3232124005-24007
S815R815del1delaGga-g1150.45454524005-24007
S815R815del1delAgg-gg1130.27272724005-24007
S815R815del1delAgGGg-1110.090909124005-24007
S815R815del1delagGag-1110.090909124005-24007
S815R815del1delAGG-TA1110.090909124005-24007
S815R815GnonsynAggGgg1010124005-24007
S815R815TnonsynaGgaCg750.71428624005-24007
S815R815TnonsynaGGaCA720.28571424005-24007
S815R815WnonsynAggTgg66124005-24007
S815R815VnonsynAGGGTT210.524005-24007
S815R815VnonsynAGgGTg210.524005-24007
S815R815del2delaGGa--210.524005-24007
S815R815del2delAGg--g210.524005-24007
S815R815NnonsynaGGaAT11124005-24007
S815R815EnonsynAGgGAg11124005-24007
S815R815InonsynaGGaTA11124005-24007
S815R815CnonsynAgGTgT11124005-24007

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S815R815RagGagA14311697All0.000274
S815R815RAggCgg2461697All0.000047
S815R815RAgGCgT191697All0.000004
S815R815RAgGCgA11697All0
S815R815RagGagA984985B.1.3750.806557
S815R815RAgGCgA1985B.1.3750.00082
S815R815KaGgaAg186186All0.000036
S815R815RagGagA146148AY.390.003608
S815R815RAggCgg2148AY.390.000049
S815R815delAGG---9393All0.000018
S815R815RAggCgg7887AY.40.000121
S815R815RagGagA887AY.40.000012
S815R815RAgGCgT187AY.40.000002
S815R815RagGagA7079B.1.617.20.000264
S815R815RAggCgg879B.1.617.20.00003
S815R815RAgGCgT179B.1.617.20.000004
S815R815RagGagA7777B.1.5260.00181
S815R815KaGgaAg6262AY.40.000096
S815R815RAggCgg4242B.1.5361
S815R815SagGagT3140All0.000006
S815R815SagGagC840All0.000002
S815R815SAGGTCA140All0
S815R815RAggCgg2440B.1.1.70.000021
S815R815RagGagA1640B.1.1.70.000014
S815R815RAggCgg2736AY.250.000162
S815R815RagGagA936AY.250.000054
S815R815MaGgaTg3232All0.000006
S815R815RagGagA1631AY.430.000071
S815R815RAgGCgT931AY.430.00004
S815R815RAggCgg631AY.430.000027
S815R815KaGgaAg2828B.1.1.70.000025
S815R815RAggCgg1225B.10.00011
S815R815RagGagA1225B.10.00011
S815R815RAgGCgT125B.10.000009
S815R815KaGgaAg2424AY.430.000106
S815R815RagGagA2222AY.1200.000818
S815R815RAggCgg1922AY.440.000116
S815R815RagGagA322AY.440.000018
S815R815delAGG---1717B.1.1.70.000015
S815R815KaGgaAg1212AY.1030.000075
S815R815del1aGga-g511All0.000001
S815R815del1Agg-gg311All0.000001
S815R815del1AGG-TA111All0
S815R815del1AgGGg-111All0
S815R815del1agGag-111All0
S815R815RagGagA911AY.1020.000239
S815R815RAgGCgT211AY.1020.000053
S815R815GAggGgg1010All0.000002
S815R815RagGagA1010AY.1000.00046
S815R815SagGagT710B.10.000064
S815R815SagGagC310B.10.000027
S815R815KaGgaAg88AY.9.20.000294
S815R815TaGgaCg57All0.000001
S815R815TaGGaCA27All0
S815R815delAGG---77B.10.000064
S815R815RagGagA47B.1.1770.000053
S815R815RAggCgg37B.1.1770.00004
S815R815delAGG---77B.1.6210.00062
S815R815WAggTgg66All0.000001
S815R815delAGG---66AY.430.000027
S815R815KaGgaAg66B.1.617.20.000023
S815R815RAggCgg36P.10.000047
S815R815RagGagA36P.10.000047
S815R815RagGagA35AY.1030.000019
S815R815RAggCgg25AY.1030.000012
S815R815RagGagA55AY.1130.000712
S815R815RagGagA55AY.1190.000177
S815R815RAggCgg45AY.290.000063
S815R815RAgGCgT15AY.290.000016
S815R815RAggCgg55AY.4.40.002046
S815R815MaGgaTg55B.10.000046
S815R815delAGG---55P.10.000079
S815R815delAGG---55P.1.150.001162
S815R815KaGgaAg44AY.390.000099
S815R815delAGG---44AY.4.50.00043
S815R815MaGgaTg44B.1.1.70.000004
S815R815KaGgaAg44B.1.3110.001098
S815R815RagGagA44B.1.3670.00317
S815R815delAGG---44B.1.617.20.000015
S815R815RagGagA33AE.80.001467
S815R815KaGgaAg33AY.1190.000106
S815R815KaGgaAg33AY.250.000018
S815R815MaGgaTg33AY.290.000047
S815R815RagGagA33AY.30.00003
S815R815GAggGgg33AY.430.000013
S815R815del1aGga-g23AY.440.000012
S815R815del1AgGGg-13AY.440.000006
S815R815RagGagA33AY.450.000365
S815R815RAgGCgT23AY.710.00095
S815R815RAggCgg13AY.710.000475
S815R815KaGgaAg33B.10.000027
S815R815KaGgaAg33B.1.1.1760.001318
S815R815SagGagT33D.20.000225
S815R815TaGGaCA220.111111
S815R815VAGGGTT12All0
S815R815VAGgGTg12All0
S815R815del2aGGa--12All0
S815R815del2AGg--g12All0
S815R815MaGgaTg22AY.1030.000012
S815R815delAGG---22AY.1200.000074
S815R815RagGagA22AY.1210.000271
S815R815delAGG---22AY.250.000012
S815R815RAggCgg22AY.270.000129
S815R815RAggCgg12AY.340.000097
S815R815RagGagA12AY.340.000097
S815R815KaGgaAg22AY.360.000296
S815R815MaGgaTg22AY.40.000003
S815R815delAGG---22AY.40.000003
S815R815delAGG---22AY.750.000112
S815R815delAGG---22B.1.1.2360.013793
S815R815KaGgaAg22B.1.1.2690.002706
S815R815RAggCgg22B.1.1.280.000622
S815R815SagGagT22B.1.1.70.000002
S815R815WAggTgg22B.1.1.70.000002
S815R815delAGG---22B.1.177.630.005405
S815R815WAggTgg22B.1.2350.005038
S815R815KaGgaAg22B.1.3510.000059
S815R815KaGgaAg22B.1.36.290.001035
S815R815KaGgaAg22B.1.5650.001621
S815R815GAggGgg22B.1.617.20.000008
S815R815MaGgaTg22D.20.00015
S815R815SagGagT22P.1.10.000635
S815R815KaGgaAg11A0.000387
S815R815delAGG---11A0.000387
S815R815GAggGgg11A.10.000282
S815R815IaGGaTA11All0
S815R815CAgGTgT11All0
S815R815EAGgGAg11All0
S815R815NaGGaAT11All0
S815R815delAGG---11AY.100.00053
S815R815KaGgaAg11AY.1000.000046
S815R815MaGgaTg11AY.1130.000142
S815R815KaGgaAg11AY.1170.000085
S815R815RAggCgg11AY.120.000316
S815R815RagGagA11AY.140.000088
S815R815delAGG---11AY.240.000431
S815R815RagGagA11AY.260.000028
S815R815SAGGTCA11AY.260.000028
S815R815KaGgaAg11AY.30.00001
S815R815MaGgaTg11AY.3.10.000085
S815R815SagGagT11AY.330.000067
S815R815SagGagT11AY.350.000233
S815R815MaGgaTg11AY.390.000025
S815R815GAggGgg11AY.39.10.00004
S815R815RAggCgg11AY.39.10.00004
S815R815TaGgaCg11AY.40.000002
S815R815del1aGga-g11AY.40.000002
S815R815SagGagT11AY.40.000002
S815R815RAggCgg11AY.420.00004
S815R815del1AGG-TA11AY.430.000004
S815R815TaGgaCg11AY.430.000004
S815R815WAggTgg11AY.440.000006
S815R815delAGG---11AY.440.000006
S815R815KaGgaAg11AY.440.000006
S815R815delAGG---11AY.46.20.000635
S815R815SagGagC11AY.470.000031
S815R815KaGgaAg11AY.470.000031
S815R815RagGagA11AY.50.000021
S815R815SagGagT11AY.50.000021
S815R815MaGgaTg11AY.50.000021
S815R815KaGgaAg11AY.5.30.000337
S815R815RagGagA11AY.580.000907
S815R815delAGG---11AY.680.000274
S815R815SagGagC11AY.690.000187
S815R815SagGagT11AY.710.000475
S815R815RAgGCgT11AY.750.000056
S815R815IaGGaTA11AY.750.000056
S815R815RagGagA11AY.75.10.00018
S815R815RagGagA11AY.790.001211
S815R815KaGgaAg11AY.850.000427
S815R815SagGagC11AY.90.000068
S815R815TaGgaCg11AY.90.000068
S815R815SagGagT11AY.9.20.000037
S815R815del1aGga-g11AY.930.000273
S815R815RAggCgg11AY.980.000079
S815R815delAGG---11AY.98.10.000048
S815R815delAGG---11B.1.10.000018
S815R815RagGagA11B.1.10.000018
S815R815SagGagT11B.1.10.000018
S815R815delAGG---11B.1.1.1390.022727
S815R815GAggGgg11B.1.1.2100.005714
S815R815VAGgGTg11B.1.1.2100.005714
S815R815MaGgaTg11B.1.1.2100.005714
S815R815MaGgaTg11B.1.1.2200.001859
S815R815RagGagA11B.1.1.2220.000204
S815R815KaGgaAg11B.1.1.2440.015385
S815R815RagGagA11B.1.1.2630.001558
S815R815delAGG---11B.1.1.2910.000742
S815R815delAGG---11B.1.1.3150.008475
S815R815RagGagA11B.1.1.3510.002793
S815R815delAGG---11B.1.1.3720.000689
S815R815GAggGgg11B.1.1.4060.006494
S815R815delAGG---11B.1.1.4090.002833
S815R815EAGgGAg11B.1.1.70.000001
S815R815TaGgaCg11B.1.1.70.000001
S815R815del1Agg-gg11B.1.1.70.000001
S815R815CAgGTgT11B.1.1.70.000001
S815R815delAGG---11B.1.1600.000031
S815R815MaGgaTg11B.1.1600.000031
S815R815GAggGgg11B.1.160.160.000929
S815R815KaGgaAg11B.1.160.80.001289
S815R815delAGG---11B.1.1770.000013
S815R815MaGgaTg11B.1.1770.000013
S815R815KaGgaAg11B.1.1770.000013
S815R815delAGG---11B.1.177.170.000821
S815R815del2aGGa--11B.1.177.510.004566
S815R815KaGgaAg11B.1.177.560.000668
S815R815SagGagT11B.1.177.730.000566
S815R815MaGgaTg11B.1.177.860.000183
S815R815SagGagT11B.1.20.000009
S815R815delAGG---11B.1.20.000009
S815R815delAGG---11B.1.2580.000067
S815R815SagGagT11B.1.258.140.00098
S815R815KaGgaAg11B.1.2840.013158
S815R815RagGagA11B.1.3110.000275
S815R815delAGG---11B.1.3510.00003
S815R815RagGagA11B.1.360.000146
S815R815VAGGGTT11B.1.36.290.000517
S815R815WAggTgg11B.1.3620.001541
S815R815SagGagT11B.1.3690.000285
S815R815SagGagT11B.1.3960.000706
S815R815RagGagA11B.1.4270.00005
S815R815SagGagT11B.1.4270.00005
S815R815SagGagC11B.1.4290.000024
S815R815MaGgaTg11B.1.5110.034483
S815R815delAGG---11B.1.5260.000024
S815R815SagGagT11B.1.5260.000024
S815R815delAGG---11B.1.5610.000397
S815R815SagGagT11B.1.5770.000687
S815R815SagGagC11B.1.6100.003546
S815R815KaGgaAg11B.1.617.10.000129
S815R815NaGGaAT11B.1.617.10.000129
S815R815MaGgaTg11B.1.617.20.000004
S815R815del2AGg--g11B.1.617.20.000004
S815R815del1agGag-11B.1.617.20.000004
S815R815RAggCgg11B.1.6210.000089
S815R815delAGG---11B.1.6380.052632
S815R815MaGgaTg11B.40.002208
S815R815KaGgaAg11C.370.000116
S815R815delAGG---11C.370.000116
S815R815TaGgaCg11D.20.000075
S815R815del1aGga-g11D.20.000075
S815R815KaGgaAg11P.10.000016
S815R815SagGagT11P.10.000016
S815R815SagGagT11P.1.100.000269
S815R815delAGG---11P.1.130.000898
S815R815MaGgaTg11P.1.140.000048
S815R815delAGG---11P.1.70.000319
S815R815del1Agg-gg11Q.10.000126
S815R815del1Agg-gg11Q.20.000613
S815R815RAgGCgT11Q.40.000455
S815R815delAGG---11Q.80.000165
S815R815MaGgaTg11R.10.00009