CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 808 | D808D | syn | gaT | gaC | 2387 | 2387 | 1 | 23984-23986 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 808 | D808D | gaT | gaC | 2387 | 2387 | All | 0.000457 |
S | 808 | D808D | gaT | gaC | 1184 | 1184 | B.1.1.7 | 0.00106 |
S | 808 | D808D | gaT | gaC | 247 | 247 | AY.4 | 0.000384 |
S | 808 | D808D | gaT | gaC | 171 | 171 | B.1.36.28 | 0.982759 |
S | 808 | D808D | gaT | gaC | 126 | 126 | AY.44 | 0.000767 |
S | 808 | D808D | gaT | gaC | 101 | 101 | AY.103 | 0.000627 |
S | 808 | D808D | gaT | gaC | 44 | 44 | B.1.2 | 0.000387 |
S | 808 | D808D | gaT | gaC | 44 | 44 | P.1.12 | 0.021297 |
S | 808 | D808D | gaT | gaC | 37 | 37 | B.1.617.2 | 0.000139 |
S | 808 | D808D | gaT | gaC | 27 | 27 | P.1 | 0.000425 |
S | 808 | D808D | gaT | gaC | 25 | 25 | B.1 | 0.000229 |
S | 808 | D808D | gaT | gaC | 20 | 20 | AY.43 | 0.000089 |
S | 808 | D808D | gaT | gaC | 19 | 19 | A.27 | 0.031457 |
S | 808 | D808D | gaT | gaC | 19 | 19 | B.1.1.291 | 0.014105 |
S | 808 | D808D | gaT | gaC | 16 | 16 | AY.25 | 0.000096 |
S | 808 | D808D | gaT | gaC | 16 | 16 | B.1.1 | 0.00029 |
S | 808 | D808D | gaT | gaC | 15 | 15 | AY.75 | 0.00084 |
S | 808 | D808D | gaT | gaC | 15 | 15 | B.1.1.519 | 0.000596 |
S | 808 | D808D | gaT | gaC | 14 | 14 | AY.3 | 0.000139 |
S | 808 | D808D | gaT | gaC | 14 | 14 | AY.47 | 0.000435 |
S | 808 | D808D | gaT | gaC | 13 | 13 | AY.5 | 0.000268 |
S | 808 | D808D | gaT | gaC | 10 | 10 | AY.3.1 | 0.000853 |
S | 808 | D808D | gaT | gaC | 10 | 10 | B.1.177.87 | 0.007278 |
S | 808 | D808D | gaT | gaC | 8 | 8 | B.1.243 | 0.000557 |
S | 808 | D808D | gaT | gaC | 8 | 8 | B.1.621 | 0.000708 |
S | 808 | D808D | gaT | gaC | 7 | 7 | AY.118 | 0.000439 |
S | 808 | D808D | gaT | gaC | 7 | 7 | B.1.177.86 | 0.001284 |
S | 808 | D808D | gaT | gaC | 7 | 7 | B.1.526 | 0.000165 |
S | 808 | D808D | gaT | gaC | 6 | 6 | B.1.36 | 0.000875 |
S | 808 | D808D | gaT | gaC | 5 | 5 | AY.100 | 0.00023 |
S | 808 | D808D | gaT | gaC | 5 | 5 | AY.42 | 0.000201 |
S | 808 | D808D | gaT | gaC | 5 | 5 | B.1.160 | 0.000156 |
S | 808 | D808D | gaT | gaC | 5 | 5 | B.1.177 | 0.000066 |
S | 808 | D808D | gaT | gaC | 5 | 5 | B.1.349 | 0.003574 |
S | 808 | D808D | gaT | gaC | 5 | 5 | B.1.36.29 | 0.002587 |
S | 808 | D808D | gaT | gaC | 5 | 5 | B.6 | 0.00455 |
S | 808 | D808D | gaT | gaC | 3 | 3 | AY.102 | 0.00008 |
S | 808 | D808D | gaT | gaC | 3 | 3 | AY.13 | 0.000483 |
S | 808 | D808D | gaT | gaC | 3 | 3 | AY.27 | 0.000194 |
S | 808 | D808D | gaT | gaC | 3 | 3 | AY.29 | 0.000047 |
S | 808 | D808D | gaT | gaC | 3 | 3 | AY.39 | 0.000074 |
S | 808 | D808D | gaT | gaC | 3 | 3 | AY.66 | 0.003209 |
S | 808 | D808D | gaT | gaC | 3 | 3 | AY.98.1 | 0.000145 |
S | 808 | D808D | gaT | gaC | 3 | 3 | B.1.1.39 | 0.001529 |
S | 808 | D808D | gaT | gaC | 3 | 3 | B.1.258.14 | 0.002941 |
S | 808 | D808D | gaT | gaC | 3 | 3 | B.1.311 | 0.000824 |
S | 808 | D808D | gaT | gaC | 3 | 3 | B.1.351 | 0.000089 |
S | 808 | D808D | gaT | gaC | 3 | 3 | B.1.416 | 0.003807 |
S | 808 | D808D | gaT | gaC | 3 | 3 | B.1.427 | 0.000151 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.105 | 0.001286 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.116 | 0.000574 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.23 | 0.000139 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.30 | 0.000791 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.33 | 0.000134 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.4.2 | 0.000043 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.4.5 | 0.000215 |
S | 808 | D808D | gaT | gaC | 2 | 2 | AY.5.3 | 0.000675 |
S | 808 | D808D | gaT | gaC | 2 | 2 | B.1.1.10 | 0.00223 |
S | 808 | D808D | gaT | gaC | 2 | 2 | B.1.258.17 | 0.000208 |
S | 808 | D808D | gaT | gaC | 2 | 2 | B.1.429 | 0.000047 |
S | 808 | D808D | gaT | gaC | 2 | 2 | B.1.596 | 0.000174 |
S | 808 | D808D | gaT | gaC | 2 | 2 | P.1.1 | 0.000635 |
S | 808 | D808D | gaT | gaC | 2 | 2 | P.1.14 | 0.000096 |
S | 808 | D808D | gaT | gaC | 2 | 2 | P.1.2 | 0.002312 |
S | 808 | D808D | gaT | gaC | 2 | 2 | P.1.7 | 0.000639 |
S | 808 | D808D | gaT | gaC | 1 | 1 | A | 0.000387 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AL.1 | 0.012987 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AU.2 | 0.002421 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.106 | 0.000335 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.111 | 0.000183 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.121 | 0.000135 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.14 | 0.000088 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.16.1 | 0.00047 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.20 | 0.000039 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.36 | 0.000148 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.46 | 0.000104 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.46.6 | 0.000072 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.52 | 0.000814 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.54 | 0.000095 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.73 | 0.000665 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.75.1 | 0.00018 |
S | 808 | D808D | gaT | gaC | 1 | 1 | AY.79 | 0.001211 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.135 | 0.004695 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.141 | 0.002012 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.158 | 0.012195 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.216 | 0.00089 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.332 | 0.03125 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.372 | 0.000689 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.397 | 0.002252 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.409 | 0.002833 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.1.54 | 0.003021 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.111 | 0.001175 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.160.14 | 0.002119 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.160.16 | 0.000929 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.161 | 0.017241 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.177.50 | 0.004695 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.234 | 0.000132 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.241 | 0.000812 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.315 | 0.006061 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.356 | 0.001727 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.36.17 | 0.000494 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.36.8 | 0.001 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.362 | 0.001541 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.366 | 0.004878 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.462 | 0.007246 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.469 | 0.00361 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.517 | 0.000427 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.561 | 0.000397 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.565 | 0.00081 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.1.597 | 0.00463 |
S | 808 | D808D | gaT | gaC | 1 | 1 | B.61 | 0.005747 |
S | 808 | D808D | gaT | gaC | 1 | 1 | D.2 | 0.000075 |
S | 808 | D808D | gaT | gaC | 1 | 1 | P.1.13 | 0.000898 |
S | 808 | D808D | gaT | gaC | 1 | 1 | Q.1 | 0.000126 |
S | 808 | D808D | gaT | gaC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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