CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 80 | D80A | nonsyn | gAt | gCt | 40300 | 40298 | 0.99995 | 21800-21802 | |
S | 80 | D80A | nonsyn | gAT | gCC | 40300 | 2 | 0.0000496278 | 21800-21802 | |
S | 80 | D80G | nonsyn | gAt | gGt | 13350 | 13350 | 1 | 21800-21802 | |
S | 80 | D80Y | nonsyn | Gat | Tat | 12907 | 12897 | 0.999225 | 21800-21802 | |
S | 80 | D80Y | nonsyn | GaT | TaC | 12907 | 10 | 0.000774773 | 21800-21802 | |
S | 80 | D80D | syn | gaT | gaC | 2454 | 2454 | 1 | 21800-21802 | |
S | 80 | D80del | del | GAT | --- | 502 | 502 | 1 | 21800-21802 | |
S | 80 | D80N | nonsyn | Gat | Aat | 472 | 471 | 0.997881 | 21800-21802 | |
S | 80 | D80N | nonsyn | GaT | AaC | 472 | 1 | 0.00211864 | 21800-21802 | |
S | 80 | D80H | nonsyn | Gat | Cat | 171 | 170 | 0.994152 | 21800-21802 | |
S | 80 | D80H | nonsyn | GaT | CaC | 171 | 1 | 0.00584795 | 21800-21802 | |
S | 80 | D80F | nonsyn | GAt | TTt | 66 | 66 | 1 | 21800-21802 | |
S | 80 | D80E | nonsyn | gaT | gaA | 62 | 45 | 0.725806 | 21800-21802 | |
S | 80 | D80E | nonsyn | gaT | gaG | 62 | 17 | 0.274194 | 21800-21802 | |
S | 80 | D80V | nonsyn | gAt | gTt | 29 | 28 | 0.965517 | 21800-21802 | |
S | 80 | D80V | nonsyn | gAT | gTA | 29 | 1 | 0.0344828 | 21800-21802 | |
S | 80 | D80S | nonsyn | GAt | TCt | 22 | 21 | 0.954545 | 21800-21802 | |
S | 80 | D80S | nonsyn | GAT | TCA | 22 | 1 | 0.0454545 | 21800-21802 | |
S | 80 | D80C | nonsyn | GAt | TGt | 11 | 11 | 1 | 21800-21802 | |
S | 80 | D80del1 | del | gaT | ga- | 6 | 3 | 0.5 | 21800-21802 | |
S | 80 | D80del1 | del | Gat | -at | 6 | 2 | 0.333333 | 21800-21802 | |
S | 80 | D80del1 | del | GAT | -NN | 6 | 1 | 0.166667 | 21800-21802 | |
S | 80 | D80del2 | del | gAT | g-- | 3 | 2 | 0.666667 | 21800-21802 | |
S | 80 | D80del2 | del | GAT | --N | 3 | 1 | 0.333333 | 21800-21802 | |
S | 80 | D80T | nonsyn | GAt | ACt | 2 | 2 | 1 | 21800-21802 | |
S | 80 | D80X | nonsyn | GaT | TaA | 1 | 1 | 1 | 21800-21802 | |
S | 80 | D80L | nonsyn | GAt | CTt | 1 | 1 | 1 | 21800-21802 | |
S | 80 | D80K | nonsyn | GaT | AaA | 1 | 1 | 1 | 21800-21802 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 80 | D80A | gAt | gCt | 40298 | 40300 | All | 0.007707 |
S | 80 | D80A | gAT | gCC | 2 | 40300 | All | 0 |
S | 80 | D80A | gAt | gCt | 33030 | 33031 | B.1.351 | 0.981867 |
S | 80 | D80A | gAT | gCC | 1 | 33031 | B.1.351 | 0.00003 |
S | 80 | D80G | gAt | gGt | 13350 | 13350 | All | 0.002553 |
S | 80 | D80Y | Gat | Tat | 12897 | 12907 | All | 0.002467 |
S | 80 | D80Y | GaT | TaC | 10 | 12907 | All | 0.000002 |
S | 80 | D80G | gAt | gGt | 12326 | 12326 | B.1.637 | 0.900694 |
S | 80 | D80A | gAt | gCt | 3299 | 3299 | B.1.351.2 | 0.998185 |
S | 80 | D80D | gaT | gaC | 2454 | 2454 | All | 0.000469 |
S | 80 | D80Y | Gat | Tat | 2020 | 2020 | AY.103 | 0.012542 |
S | 80 | D80A | gAt | gCt | 1665 | 1665 | B.1.351.5 | 0.998201 |
S | 80 | D80Y | Gat | Tat | 1558 | 1558 | AY.4 | 0.002425 |
S | 80 | D80A | gAt | gCt | 1139 | 1139 | B.1.351.3 | 0.998247 |
S | 80 | D80Y | Gat | Tat | 1124 | 1124 | B.1.367 | 0.89065 |
S | 80 | D80Y | Gat | Tat | 1121 | 1121 | B.1.1.7 | 0.001004 |
S | 80 | D80D | gaT | gaC | 895 | 895 | B.1.617.2 | 0.00337 |
S | 80 | D80Y | Gat | Tat | 719 | 719 | B.1.177.9 | 0.95739 |
S | 80 | D80del | GAT | --- | 502 | 502 | All | 0.000096 |
S | 80 | D80A | gAt | gCt | 484 | 484 | B.1 | 0.004433 |
S | 80 | D80N | Gat | Aat | 471 | 472 | All | 0.00009 |
S | 80 | D80N | GaT | AaC | 1 | 472 | All | 0 |
S | 80 | D80Y | Gat | Tat | 471 | 471 | B.1.617.2 | 0.001774 |
S | 80 | D80Y | Gat | Tat | 422 | 422 | AY.5.4 | 0.116768 |
S | 80 | D80Y | Gat | Tat | 385 | 385 | B.1.177.30 | 0.967337 |
S | 80 | D80G | gAt | gGt | 381 | 381 | B.1 | 0.00349 |
S | 80 | D80Y | Gat | Tat | 363 | 363 | AY.44 | 0.002209 |
S | 80 | D80Y | Gat | Tat | 358 | 358 | B.1.1.417 | 0.967568 |
S | 80 | D80Y | Gat | Tat | 306 | 306 | B.1 | 0.002803 |
S | 80 | D80Y | Gat | Tat | 249 | 250 | B.1.1 | 0.004517 |
S | 80 | D80Y | GaT | TaC | 1 | 250 | B.1.1 | 0.000018 |
S | 80 | D80D | gaT | gaC | 229 | 229 | AY.4.2.1 | 0.034118 |
S | 80 | D80Y | Gat | Tat | 220 | 220 | AY.43 | 0.000975 |
S | 80 | D80Y | Gat | Tat | 211 | 211 | AY.68 | 0.057761 |
S | 80 | D80Y | Gat | Tat | 209 | 209 | AZ.5 | 0.733333 |
S | 80 | D80Y | Gat | Tat | 208 | 208 | AY.102 | 0.005515 |
S | 80 | D80Y | Gat | Tat | 198 | 198 | B.1.177 | 0.002607 |
S | 80 | D80G | gAt | gGt | 197 | 197 | AV.1 | 0.994949 |
S | 80 | D80D | gaT | gaC | 182 | 182 | AY.103 | 0.00113 |
S | 80 | D80Y | Gat | Tat | 179 | 179 | B.1.2 | 0.001576 |
S | 80 | D80H | Gat | Cat | 170 | 171 | All | 0.000033 |
S | 80 | D80H | GaT | CaC | 1 | 171 | All | 0 |
S | 80 | D80Y | Gat | Tat | 170 | 170 | B.1.258 | 0.011313 |
S | 80 | D80D | gaT | gaC | 161 | 161 | B.1.1.7 | 0.000144 |
S | 80 | D80Y | Gat | Tat | 154 | 154 | B.1.1.519 | 0.006115 |
S | 80 | D80Y | Gat | Tat | 136 | 136 | B.1.429 | 0.0032 |
S | 80 | D80Y | Gat | Tat | 109 | 109 | B.1.1.222 | 0.022236 |
S | 80 | D80Y | Gat | Tat | 109 | 109 | B.1.160 | 0.003399 |
S | 80 | D80G | gAt | gGt | 96 | 96 | B.1.1.7 | 0.000086 |
S | 80 | D80Y | Gat | Tat | 92 | 92 | B.1.36.26 | 0.262857 |
S | 80 | D80del | GAT | --- | 92 | 92 | B.1.617.2 | 0.000346 |
S | 80 | D80D | gaT | gaC | 87 | 87 | AY.4 | 0.000135 |
S | 80 | D80D | gaT | gaC | 85 | 85 | B.1 | 0.000779 |
S | 80 | D80del | GAT | --- | 84 | 84 | AY.43 | 0.000372 |
S | 80 | D80D | gaT | gaC | 77 | 77 | AY.43 | 0.000341 |
S | 80 | D80N | Gat | Aat | 77 | 77 | B.1.637 | 0.005627 |
S | 80 | D80D | gaT | gaC | 74 | 74 | AY.47 | 0.002302 |
S | 80 | D80D | gaT | gaC | 70 | 70 | B.1.1 | 0.00127 |
S | 80 | D80F | GAt | TTt | 66 | 66 | All | 0.000013 |
S | 80 | D80Y | Gat | Tat | 65 | 65 | D.2 | 0.004878 |
S | 80 | D80F | GAt | TTt | 63 | 63 | B.1.243 | 0.004384 |
S | 80 | D80E | gaT | gaA | 45 | 62 | All | 0.000009 |
S | 80 | D80E | gaT | gaG | 17 | 62 | All | 0.000003 |
S | 80 | D80Y | Gat | Tat | 60 | 60 | B.1.1.170 | 0.074813 |
S | 80 | D80Y | Gat | Tat | 56 | 56 | B.1.1.214 | 0.003106 |
S | 80 | D80Y | Gat | Tat | 54 | 54 | AY.9 | 0.00365 |
S | 80 | D80Y | Gat | Tat | 53 | 53 | AY.25 | 0.000319 |
S | 80 | D80A | gAt | gCt | 52 | 52 | B.1.524 | 0.073136 |
S | 80 | D80Y | Gat | Tat | 49 | 49 | B.1.1.28 | 0.015251 |
S | 80 | D80Y | Gat | Tat | 48 | 48 | AY.5.3 | 0.016194 |
S | 80 | D80H | Gat | Cat | 47 | 47 | AY.4 | 0.000073 |
S | 80 | D80A | gAt | gCt | 47 | 47 | AY.45 | 0.005719 |
S | 80 | D80Y | Gat | Tat | 46 | 46 | AY.46.6 | 0.003322 |
S | 80 | D80del | GAT | --- | 46 | 46 | B.1.1.7 | 0.000041 |
S | 80 | D80A | gAt | gCt | 44 | 44 | B.1.617.2 | 0.000166 |
S | 80 | D80N | Gat | Aat | 42 | 42 | B.1.1.7 | 0.000038 |
S | 80 | D80Y | Gat | Tat | 40 | 40 | B.1.1.39 | 0.020387 |
S | 80 | D80H | Gat | Cat | 39 | 39 | B.1.170 | 0.168103 |
S | 80 | D80Y | Gat | Tat | 38 | 38 | B.1.621 | 0.003364 |
S | 80 | D80Y | Gat | Tat | 36 | 36 | AY.98.1 | 0.001744 |
S | 80 | D80N | Gat | Aat | 36 | 36 | B.1.2 | 0.000317 |
S | 80 | D80Y | Gat | Tat | 35 | 35 | AY.54 | 0.003337 |
S | 80 | D80A | gAt | gCt | 32 | 32 | AY.43 | 0.000142 |
S | 80 | D80Y | Gat | Tat | 31 | 31 | AY.9.2 | 0.001139 |
S | 80 | D80A | gAt | gCt | 31 | 31 | B.1.1 | 0.000562 |
S | 80 | D80Y | Gat | Tat | 31 | 31 | B.1.469 | 0.111913 |
S | 80 | D80A | gAt | gCt | 30 | 30 | B.1.1.306 | 0.013152 |
S | 80 | D80D | gaT | gaC | 30 | 30 | B.1.596 | 0.002614 |
S | 80 | D80V | gAt | gTt | 28 | 29 | All | 0.000005 |
S | 80 | D80V | gAT | gTA | 1 | 29 | All | 0 |
S | 80 | D80N | Gat | Aat | 29 | 29 | B.1.177 | 0.000382 |
S | 80 | D80Y | Gat | Tat | 28 | 28 | AY.3 | 0.000278 |
S | 80 | D80del | GAT | --- | 28 | 28 | AY.44 | 0.00017 |
S | 80 | D80G | gAt | gGt | 28 | 28 | AY.86 | 0.023237 |
S | 80 | D80D | gaT | gaC | 28 | 28 | B.1.2 | 0.000247 |
S | 80 | D80G | gAt | gGt | 27 | 27 | AY.4 | 0.000042 |
S | 80 | D80del | GAT | --- | 27 | 27 | AY.9 | 0.001825 |
S | 80 | D80G | gAt | gGt | 26 | 26 | B.1.1 | 0.000472 |
S | 80 | D80A | gAt | gCt | 26 | 26 | B.1.351.1 | 1 |
S | 80 | D80N | Gat | Aat | 25 | 25 | AY.3 | 0.000249 |
S | 80 | D80Y | Gat | Tat | 24 | 24 | AY.20 | 0.000933 |
S | 80 | D80Y | Gat | Tat | 24 | 24 | AY.4.4 | 0.00982 |
S | 80 | D80D | gaT | gaC | 24 | 24 | AY.70 | 0.005004 |
S | 80 | D80A | gAt | gCt | 24 | 24 | B.1.554 | 0.105727 |
S | 80 | D80Y | Gat | Tat | 23 | 23 | AY.39 | 0.000568 |
S | 80 | D80N | Gat | Aat | 23 | 23 | AY.5.4 | 0.006364 |
S | 80 | D80D | gaT | gaC | 23 | 23 | AY.52 | 0.01873 |
S | 80 | D80Y | Gat | Tat | 23 | 23 | B.1.470 | 0.032303 |
S | 80 | D80G | gAt | gGt | 23 | 23 | B.1.526 | 0.000541 |
S | 80 | D80S | GAt | TCt | 21 | 22 | All | 0.000004 |
S | 80 | D80S | GAT | TCA | 1 | 22 | All | 0 |
S | 80 | D80del | GAT | --- | 22 | 22 | AY.25 | 0.000132 |
S | 80 | D80Y | Gat | Tat | 22 | 22 | B.1.1.284 | 0.002363 |
S | 80 | D80Y | Gat | Tat | 22 | 22 | B.1.243 | 0.001531 |
S | 80 | D80D | gaT | gaC | 22 | 22 | B.1.565 | 0.017828 |
S | 80 | D80D | gaT | gaC | 22 | 22 | P.1.14 | 0.001052 |
S | 80 | D80Y | Gat | Tat | 20 | 20 | AY.117 | 0.00169 |
S | 80 | D80Y | Gat | Tat | 20 | 20 | AY.29 | 0.000315 |
S | 80 | D80D | gaT | gaC | 20 | 20 | AY.3 | 0.000199 |
S | 80 | D80del | GAT | --- | 20 | 20 | AY.4 | 0.000031 |
S | 80 | D80H | Gat | Cat | 20 | 20 | B.1.2 | 0.000176 |
S | 80 | D80S | GAt | TCt | 20 | 20 | B.1.351 | 0.000595 |
S | 80 | D80Y | Gat | Tat | 20 | 20 | B.1.36 | 0.002918 |
S | 80 | D80D | gaT | gaC | 19 | 19 | AY.44 | 0.000116 |
S | 80 | D80A | gAt | gCt | 19 | 19 | AY.61 | 0.001991 |
S | 80 | D80G | gAt | gGt | 19 | 19 | B.1.177.7 | 0.003132 |
S | 80 | D80N | Gat | Aat | 19 | 19 | B.1.427 | 0.000959 |
S | 80 | D80Y | Gat | Tat | 19 | 19 | P.1 | 0.000299 |
S | 80 | D80Y | Gat | Tat | 18 | 18 | B.1.181 | 0.352941 |
S | 80 | D80G | gAt | gGt | 18 | 18 | B.1.2 | 0.000158 |
S | 80 | D80D | gaT | gaC | 18 | 18 | B.1.438.1 | 0.001931 |
S | 80 | D80Y | Gat | Tat | 18 | 18 | B.40 | 0.006557 |
S | 80 | D80Y | Gat | Tat | 18 | 18 | P.2 | 0.003359 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | A.2.5 | 0.008483 |
S | 80 | D80D | gaT | gaC | 17 | 17 | AY.25 | 0.000102 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | AY.26 | 0.000481 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | AY.6 | 0.000699 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | B.1.1.174 | 0.057432 |
S | 80 | D80D | gaT | gaC | 17 | 17 | B.1.221.1 | 0.049419 |
S | 80 | D80del | GAT | --- | 16 | 16 | AY.102 | 0.000424 |
S | 80 | D80Y | Gat | Tat | 16 | 16 | AY.5 | 0.00033 |
S | 80 | D80Y | Gat | Tat | 16 | 16 | B | 0.002045 |
S | 80 | D80D | gaT | gaC | 16 | 16 | B.1.160 | 0.000499 |
S | 80 | D80A | gAt | gCt | 16 | 16 | B.1.636 | 0.107383 |
S | 80 | D80D | gaT | gaC | 16 | 16 | P.1 | 0.000252 |
S | 80 | D80D | gaT | gaC | 15 | 15 | AY.39 | 0.000371 |
S | 80 | D80N | Gat | Aat | 15 | 15 | AY.4 | 0.000023 |
S | 80 | D80H | Gat | Cat | 15 | 15 | AY.44 | 0.000091 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | AY.47 | 0.000467 |
S | 80 | D80D | gaT | gaC | 15 | 15 | AY.5 | 0.00031 |
S | 80 | D80D | gaT | gaC | 15 | 15 | AY.5.3 | 0.005061 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.1.398 | 0.048387 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.177.81 | 0.00284 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.565 | 0.012156 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.596 | 0.001307 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | AY.120 | 0.000521 |
S | 80 | D80E | gaT | gaA | 13 | 14 | AY.4 | 0.00002 |
S | 80 | D80E | gaT | gaG | 1 | 14 | AY.4 | 0.000002 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | AY.46.4 | 0.002303 |
S | 80 | D80G | gAt | gGt | 14 | 14 | B.1.429 | 0.000329 |
S | 80 | D80N | Gat | Aat | 14 | 14 | B.1.429 | 0.000329 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | C.37 | 0.001625 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | R.1 | 0.00126 |
S | 80 | D80D | gaT | gaC | 13 | 13 | B.1.243 | 0.000905 |
S | 80 | D80Y | Gat | Tat | 13 | 13 | B.1.380 | 0.086093 |
S | 80 | D80D | gaT | gaC | 13 | 13 | B.1.526 | 0.000306 |
S | 80 | D80del | GAT | --- | 12 | 12 | AY.34.1 | 0.006119 |
S | 80 | D80A | gAt | gCt | 12 | 12 | AY.44 | 0.000073 |
S | 80 | D80A | gAt | gCt | 12 | 12 | B.1.1.432 | 0.01519 |
S | 80 | D80Y | Gat | Tat | 12 | 12 | B.1.409 | 0.009375 |
S | 80 | D80Y | Gat | Tat | 12 | 12 | B.1.526 | 0.000282 |
S | 80 | D80N | Gat | Aat | 12 | 12 | B.1.595 | 0.003132 |
S | 80 | D80D | gaT | gaC | 11 | 11 | A | 0.004257 |
S | 80 | D80C | GAt | TGt | 11 | 11 | All | 0.000002 |
S | 80 | D80Y | Gat | Tat | 11 | 11 | AY.91 | 0.008035 |
S | 80 | D80Y | Gat | Tat | 11 | 11 | AY.92 | 0.00316 |
S | 80 | D80N | Gat | Aat | 11 | 11 | B.1 | 0.000101 |
S | 80 | D80A | gAt | gCt | 11 | 11 | B.1.177.73 | 0.006229 |
S | 80 | D80Y | Gat | Tat | 11 | 11 | B.1.221 | 0.000781 |
S | 80 | D80C | GAt | TGt | 11 | 11 | B.1.637 | 0.000804 |
S | 80 | D80D | gaT | gaC | 10 | 10 | AY.29 | 0.000158 |
S | 80 | D80G | gAt | gGt | 10 | 10 | AY.44 | 0.000061 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | AY.46 | 0.001041 |
S | 80 | D80A | gAt | gCt | 10 | 10 | AY.59 | 0.005297 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | AY.61 | 0.001048 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | AY.77 | 0.011274 |
S | 80 | D80N | Gat | Aat | 9 | 10 | B.1.1 | 0.000163 |
S | 80 | D80N | GaT | AaC | 1 | 10 | B.1.1 | 0.000018 |
S | 80 | D80A | gAt | gCt | 10 | 10 | B.1.1.189 | 0.015129 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | B.1.1.25 | 0.005685 |
S | 80 | D80A | gAt | gCt | 10 | 10 | B.1.1.7 | 0.000009 |
S | 80 | D80G | gAt | gGt | 10 | 10 | B.1.427 | 0.000505 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | P.1.14 | 0.000478 |
S | 80 | D80A | gAt | gCt | 9 | 9 | AY.19 | 0.010262 |
S | 80 | D80A | gAt | gCt | 9 | 9 | AY.38 | 0.004493 |
S | 80 | D80D | gaT | gaC | 9 | 9 | AY.57 | 0.005906 |
S | 80 | D80G | gAt | gGt | 9 | 9 | B.1.1.507 | 0.078261 |
S | 80 | D80A | gAt | gCt | 9 | 9 | B.1.1.507 | 0.078261 |
S | 80 | D80N | Gat | Aat | 9 | 9 | B.1.1.63 | 0.003472 |
S | 80 | D80Y | Gat | Tat | 9 | 9 | B.1.177.4 | 0.0019 |
S | 80 | D80Y | Gat | Tat | 9 | 9 | B.1.36.18 | 0.003782 |
S | 80 | D80D | gaT | gaC | 9 | 9 | B.1.517 | 0.003843 |
S | 80 | D80N | Gat | Aat | 9 | 9 | B.1.568 | 0.01 |
S | 80 | D80G | gAt | gGt | 9 | 9 | B.1.617.2 | 0.000034 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | A.2.5.3 | 0.082474 |
S | 80 | D80N | Gat | Aat | 8 | 8 | AE.8 | 0.003912 |
S | 80 | D80G | gAt | gGt | 8 | 8 | AY.103 | 0.00005 |
S | 80 | D80D | gaT | gaC | 8 | 8 | AY.33 | 0.000534 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | AY.33 | 0.000534 |
S | 80 | D80G | gAt | gGt | 8 | 8 | AY.4.2 | 0.000174 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | AY.4.5 | 0.00086 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | AY.75 | 0.000448 |
S | 80 | D80A | gAt | gCt | 8 | 8 | AY.75.1 | 0.001442 |
S | 80 | D80G | gAt | gGt | 8 | 8 | B | 0.001022 |
S | 80 | D80D | gaT | gaC | 8 | 8 | B.1.1.434 | 0.002788 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | B.1.1.50 | 0.005431 |
S | 80 | D80E | gaT | gaA | 8 | 8 | B.1.1.7 | 0.000007 |
S | 80 | D80Y | GaT | TaC | 8 | 8 | B.1.438.2 | 0.153846 |
S | 80 | D80N | Gat | Aat | 8 | 8 | C.1 | 0.019139 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.119 | 0.000247 |
S | 80 | D80D | gaT | gaC | 7 | 7 | AY.120 | 0.00026 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.120.1 | 0.002247 |
S | 80 | D80Y | Gat | Tat | 6 | 7 | AY.23 | 0.000418 |
S | 80 | D80Y | GaT | TaC | 1 | 7 | AY.23 | 0.00007 |
S | 80 | D80A | gAt | gCt | 7 | 7 | AY.26 | 0.000198 |
S | 80 | D80del | GAT | --- | 7 | 7 | AY.3 | 0.00007 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.3.1 | 0.000597 |
S | 80 | D80A | gAt | gCt | 7 | 7 | AY.39 | 0.000173 |
S | 80 | D80A | gAt | gCt | 7 | 7 | AY.4 | 0.000011 |
S | 80 | D80A | gAt | gCt | 7 | 7 | AY.71 | 0.003325 |
S | 80 | D80A | gAt | gCt | 7 | 7 | AY.86 | 0.005809 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.98 | 0.000553 |
S | 80 | D80D | gaT | gaC | 7 | 7 | B.1.1.26 | 0.036649 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | B.1.1.512 | 0.2 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | B.1.241 | 0.005682 |
S | 80 | D80N | Gat | Aat | 7 | 7 | B.1.36.29 | 0.003621 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | B.1.36.29 | 0.003621 |
S | 80 | D80del1 | gaT | ga- | 3 | 6 | All | 0.000001 |
S | 80 | D80del1 | Gat | -at | 2 | 6 | All | 0 |
S | 80 | D80del1 | GAT | -NN | 1 | 6 | All | 0 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.100 | 0.000276 |
S | 80 | D80del | GAT | --- | 6 | 6 | AY.103 | 0.000037 |
S | 80 | D80G | gAt | gGt | 6 | 6 | AY.25 | 0.000036 |
S | 80 | D80G | gAt | gGt | 6 | 6 | AY.3 | 0.00006 |
S | 80 | D80D | gaT | gaC | 6 | 6 | AY.3.1 | 0.000512 |
S | 80 | D80del | GAT | --- | 6 | 6 | AY.33 | 0.000401 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.34.1 | 0.00306 |
S | 80 | D80A | gAt | gCt | 6 | 6 | AY.42 | 0.000241 |
S | 80 | D80G | gAt | gGt | 6 | 6 | AY.43 | 0.000027 |
S | 80 | D80N | Gat | Aat | 6 | 6 | AY.43 | 0.000027 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.45 | 0.00073 |
S | 80 | D80A | gAt | gCt | 6 | 6 | AY.56 | 0.009631 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.9.1 | 0.000502 |
S | 80 | D80A | gAt | gCt | 6 | 6 | AY.9.2 | 0.00022 |
S | 80 | D80N | Gat | Aat | 6 | 6 | B.1.1.28 | 0.001867 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.1.487 | 0.03352 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.111 | 0.007051 |
S | 80 | D80G | gAt | gGt | 6 | 6 | B.1.177 | 0.000079 |
S | 80 | D80del | GAT | --- | 6 | 6 | B.1.177 | 0.000079 |
S | 80 | D80G | gAt | gGt | 6 | 6 | B.1.214.2 | 0.003597 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.234 | 0.000792 |
S | 80 | D80D | gaT | gaC | 6 | 6 | B.1.429 | 0.000141 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.466 | 0.139535 |
S | 80 | D80A | gAt | gCt | 6 | 6 | B.1.595 | 0.001566 |
S | 80 | D80A | gAt | gCt | 6 | 6 | B.1.609 | 0.002876 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | A.30 | 0.714286 |
S | 80 | D80N | Gat | Aat | 5 | 5 | AY.102 | 0.000133 |
S | 80 | D80A | gAt | gCt | 5 | 5 | AY.103 | 0.000031 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.106 | 0.001674 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.118 | 0.000313 |
S | 80 | D80D | gaT | gaC | 5 | 5 | AY.23 | 0.000349 |
S | 80 | D80A | gAt | gCt | 5 | 5 | AY.36 | 0.000741 |
S | 80 | D80N | Gat | Aat | 5 | 5 | AY.39 | 0.000124 |
S | 80 | D80del | GAT | --- | 5 | 5 | AY.39 | 0.000124 |
S | 80 | D80V | gAt | gTt | 5 | 5 | AY.4 | 0.000008 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.4.2 | 0.000108 |
S | 80 | D80del | GAT | --- | 5 | 5 | AY.4.5 | 0.000537 |
S | 80 | D80A | gAt | gCt | 5 | 5 | AY.46 | 0.00052 |
S | 80 | D80del | GAT | --- | 5 | 5 | AY.46 | 0.00052 |
S | 80 | D80N | Gat | Aat | 5 | 5 | AY.54 | 0.000477 |
S | 80 | D80del | GAT | --- | 5 | 5 | AY.61 | 0.000524 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.64 | 0.002976 |
S | 80 | D80del | GAT | --- | 5 | 5 | AY.9.2 | 0.000184 |
S | 80 | D80del | GAT | --- | 5 | 5 | B.1.1 | 0.000091 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.1.1 | 0.001633 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.1.216 | 0.004452 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.1.306 | 0.002192 |
S | 80 | D80D | gaT | gaC | 5 | 5 | B.1.1.519 | 0.000199 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.105 | 0.048077 |
S | 80 | D80D | gaT | gaC | 5 | 5 | B.1.177 | 0.000066 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.177.45 | 0.001906 |
S | 80 | D80E | gaT | gaG | 5 | 5 | B.1.258.17 | 0.00052 |
S | 80 | D80D | gaT | gaC | 5 | 5 | B.1.36.31 | 0.008757 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.466.2 | 0.001956 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.595 | 0.001305 |
S | 80 | D80N | Gat | Aat | 5 | 5 | B.1.617.2 | 0.000019 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.627 | 0.010101 |
S | 80 | D80G | gAt | gGt | 5 | 5 | B.1.636 | 0.033557 |
S | 80 | D80G | gAt | gGt | 5 | 5 | P.1 | 0.000079 |
S | 80 | D80A | gAt | gCt | 5 | 5 | P.5 | 0.068493 |
S | 80 | D80del | GAT | --- | 4 | 4 | 0.222222 | |
S | 80 | D80A | gAt | gCt | 4 | 4 | A | 0.001548 |
S | 80 | D80A | gAt | gCt | 4 | 4 | AY.1 | 0.001583 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.102 | 0.000106 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.116 | 0.001147 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.118 | 0.000251 |
S | 80 | D80del | GAT | --- | 4 | 4 | AY.121 | 0.000541 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.20 | 0.000155 |
S | 80 | D80G | gAt | gGt | 4 | 4 | AY.22 | 0.008368 |
S | 80 | D80A | gAt | gCt | 4 | 4 | AY.23 | 0.000279 |
S | 80 | D80del | GAT | --- | 4 | 4 | AY.26 | 0.000113 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.26 | 0.000113 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.37 | 0.001264 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.4.2 | 0.000087 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.42 | 0.000161 |
S | 80 | D80del | GAT | --- | 4 | 4 | AY.47 | 0.000124 |
S | 80 | D80del | GAT | --- | 4 | 4 | AY.5 | 0.000083 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.55 | 0.00367 |
S | 80 | D80A | gAt | gCt | 4 | 4 | AY.65 | 0.002132 |
S | 80 | D80A | gAt | gCt | 4 | 4 | AY.66 | 0.004278 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.7 | 0.000784 |
S | 80 | D80D | gaT | gaC | 4 | 4 | AY.71 | 0.0019 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.84 | 0.00175 |
S | 80 | D80A | gAt | gCt | 3 | 4 | AY.91 | 0.002191 |
S | 80 | D80A | gAT | gCC | 1 | 4 | AY.91 | 0.00073 |
S | 80 | D80A | gAt | gCt | 4 | 4 | AY.96 | 0.008299 |
S | 80 | D80H | Gat | Cat | 4 | 4 | B.1 | 0.000037 |
S | 80 | D80del | GAT | --- | 4 | 4 | B.1 | 0.000037 |
S | 80 | D80V | gAt | gTt | 4 | 4 | B.1 | 0.000037 |
S | 80 | D80N | Gat | Aat | 4 | 4 | B.1.1.222 | 0.000816 |
S | 80 | D80N | Gat | Aat | 4 | 4 | B.1.1.305 | 0.015444 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.1.33 | 0.001684 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.1.37 | 0.000771 |
S | 80 | D80A | gAt | gCt | 4 | 4 | B.1.1.375 | 0.047619 |
S | 80 | D80A | gAt | gCt | 4 | 4 | B.1.1.409 | 0.011331 |
S | 80 | D80N | Gat | Aat | 4 | 4 | B.1.1.433 | 0.005698 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.1.462 | 0.034483 |
S | 80 | D80D | gaT | gaC | 4 | 4 | B.1.258 | 0.000266 |
S | 80 | D80A | gAt | gCt | 4 | 4 | B.1.367 | 0.00317 |
S | 80 | D80D | gaT | gaC | 4 | 4 | B.1.427 | 0.000202 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.427 | 0.000202 |
S | 80 | D80A | gAt | gCt | 4 | 4 | B.1.429 | 0.000094 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | P.1.17 | 0.000647 |
S | 80 | D80G | gAt | gGt | 4 | 4 | P.5 | 0.054795 |
S | 80 | D80G | gAt | gGt | 4 | 4 | R.1 | 0.00036 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AD.2 | 0.000657 |
S | 80 | D80del2 | gAT | g-- | 2 | 3 | All | 0 |
S | 80 | D80del2 | GAT | --N | 1 | 3 | All | 0 |
S | 80 | D80D | gaT | gaC | 3 | 3 | AY.100 | 0.000138 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.101 | 0.001471 |
S | 80 | D80E | gaT | gaG | 2 | 3 | AY.102 | 0.000053 |
S | 80 | D80E | gaT | gaA | 1 | 3 | AY.102 | 0.000027 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.116 | 0.00086 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.116 | 0.00086 |
S | 80 | D80del | GAT | --- | 3 | 3 | AY.118 | 0.000188 |
S | 80 | D80H | Gat | Cat | 3 | 3 | AY.119 | 0.000106 |
S | 80 | D80D | gaT | gaC | 3 | 3 | AY.119 | 0.000106 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.120.2 | 0.003856 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.14 | 0.000264 |
S | 80 | D80del | GAT | --- | 3 | 3 | AY.20 | 0.000117 |
S | 80 | D80E | gaT | gaA | 3 | 3 | AY.25 | 0.000018 |
S | 80 | D80G | gAt | gGt | 3 | 3 | AY.26 | 0.000085 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.3 | 0.00003 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.32 | 0.001597 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.34 | 0.000291 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.38 | 0.001498 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.40 | 0.002893 |
S | 80 | D80E | gaT | gaA | 3 | 3 | AY.43 | 0.000013 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.46.2 | 0.001906 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.5 | 0.000062 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.65 | 0.001599 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.70 | 0.000626 |
S | 80 | D80A | gAt | gCt | 3 | 3 | AY.75 | 0.000168 |
S | 80 | D80del | GAT | --- | 3 | 3 | AY.75 | 0.000168 |
S | 80 | D80N | Gat | Aat | 3 | 3 | AY.78 | 0.004622 |
S | 80 | D80del | GAT | --- | 3 | 3 | AY.85 | 0.001282 |
S | 80 | D80D | gaT | gaC | 3 | 3 | AY.86 | 0.00249 |
S | 80 | D80F | GAt | TTt | 3 | 3 | B.1 | 0.000027 |
S | 80 | D80D | gaT | gaC | 3 | 3 | B.1.1.159 | 0.014019 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.1.241 | 0.006211 |
S | 80 | D80H | Gat | Cat | 3 | 3 | B.1.1.28 | 0.000934 |
S | 80 | D80A | gAt | gCt | 3 | 3 | B.1.1.389 | 0.018182 |
S | 80 | D80D | gaT | gaC | 3 | 3 | B.1.1.464 | 0.004418 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.1.506 | 0.111111 |
S | 80 | D80A | gAt | gCt | 3 | 3 | B.1.1.53 | 0.041096 |
S | 80 | D80V | gAt | gTt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 80 | D80G | gAt | gGt | 3 | 3 | B.1.160 | 0.000094 |
S | 80 | D80A | gAt | gCt | 3 | 3 | B.1.160 | 0.000094 |
S | 80 | D80N | Gat | Aat | 3 | 3 | B.1.160 | 0.000094 |
S | 80 | D80A | gAt | gCt | 3 | 3 | B.1.177.86 | 0.00055 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.22 | 0.003953 |
S | 80 | D80N | Gat | Aat | 3 | 3 | B.1.279 | 0.001541 |
S | 80 | D80V | gAt | gTt | 3 | 3 | B.1.351 | 0.000089 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.36.1 | 0.003421 |
S | 80 | D80D | gaT | gaC | 3 | 3 | B.1.36.10 | 0.014354 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.36.10 | 0.014354 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.36.17 | 0.001482 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.369 | 0.000856 |
S | 80 | D80del | GAT | --- | 3 | 3 | B.1.429 | 0.000071 |
S | 80 | D80H | Gat | Cat | 3 | 3 | B.1.429 | 0.000071 |
S | 80 | D80D | gaT | gaC | 3 | 3 | B.1.466.2 | 0.001174 |
S | 80 | D80N | Gat | Aat | 3 | 3 | B.1.569 | 0.043478 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.575 | 0.00091 |
S | 80 | D80G | gAt | gGt | 3 | 3 | B.1.596 | 0.000261 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.617.1 | 0.000387 |
S | 80 | D80H | Gat | Cat | 2 | 3 | B.1.617.2 | 0.000008 |
S | 80 | D80H | GaT | CaC | 1 | 3 | B.1.617.2 | 0.000004 |
S | 80 | D80G | gAt | gGt | 3 | 3 | B.1.618 | 0.012097 |
S | 80 | D80H | Gat | Cat | 3 | 3 | B.1.621 | 0.000266 |
S | 80 | D80D | gaT | gaC | 3 | 3 | B.1.621 | 0.000266 |
S | 80 | D80A | gAt | gCt | 3 | 3 | P.1 | 0.000047 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | P.1.15 | 0.000697 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | Q.8 | 0.000495 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | A.1 | 0.000564 |
S | 80 | D80D | gaT | gaC | 2 | 2 | A.2.5 | 0.000998 |
S | 80 | D80T | GAt | ACt | 2 | 2 | All | 0 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.1 | 0.000791 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.1 | 0.000791 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.102 | 0.000053 |
S | 80 | D80G | gAt | gGt | 2 | 2 | AY.102 | 0.000053 |
S | 80 | D80H | Gat | Cat | 2 | 2 | AY.103 | 0.000012 |
S | 80 | D80N | Gat | Aat | 2 | 2 | AY.103 | 0.000012 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.108 | 0.002205 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.117 | 0.000169 |
S | 80 | D80N | Gat | Aat | 2 | 2 | AY.119 | 0.000071 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.120 | 0.000074 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.16 | 0.000759 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.19 | 0.002281 |
S | 80 | D80G | gAt | gGt | 2 | 2 | AY.20 | 0.000078 |
S | 80 | D80H | Gat | Cat | 2 | 2 | AY.23 | 0.000139 |
S | 80 | D80G | gAt | gGt | 2 | 2 | AY.23 | 0.000139 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.24 | 0.000862 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.24 | 0.000862 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.27 | 0.000129 |
S | 80 | D80N | Gat | Aat | 2 | 2 | AY.29 | 0.000032 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.29 | 0.000032 |
S | 80 | D80G | gAt | gGt | 2 | 2 | AY.29.1 | 0.000441 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.33 | 0.000134 |
S | 80 | D80G | gAt | gGt | 2 | 2 | AY.35 | 0.000466 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.39.1 | 0.000079 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.4.5 | 0.000215 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.40 | 0.001929 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.42 | 0.00008 |
S | 80 | D80N | Gat | Aat | 2 | 2 | AY.42 | 0.00008 |
S | 80 | D80del1 | Gat | -at | 1 | 2 | AY.43 | 0.000004 |
S | 80 | D80del1 | GAT | -NN | 1 | 2 | AY.43 | 0.000004 |
S | 80 | D80E | gaT | gaG | 1 | 2 | AY.44 | 0.000006 |
S | 80 | D80E | gaT | gaA | 1 | 2 | AY.44 | 0.000006 |
S | 80 | D80G | gAt | gGt | 2 | 2 | AY.46 | 0.000208 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.48 | 0.00093 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.52 | 0.001629 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.53 | 0.000575 |
S | 80 | D80E | gaT | gaA | 2 | 2 | AY.54 | 0.000191 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.54 | 0.000191 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.54 | 0.000191 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.58 | 0.001815 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.59 | 0.001059 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.59 | 0.001059 |
S | 80 | D80V | gAt | gTt | 2 | 2 | AY.59 | 0.001059 |
S | 80 | D80T | GAt | ACt | 2 | 2 | AY.59 | 0.001059 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.67 | 0.000929 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.68 | 0.000547 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.68 | 0.000547 |
S | 80 | D80E | gaT | gaA | 2 | 2 | AY.7.1 | 0.000225 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.7.2 | 0.001119 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.7.2 | 0.001119 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.70 | 0.000417 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.75 | 0.000112 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.75.1 | 0.000361 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.78 | 0.003082 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AY.9 | 0.000135 |
S | 80 | D80N | Gat | Aat | 2 | 2 | AY.9 | 0.000135 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.92 | 0.000575 |
S | 80 | D80del | GAT | --- | 2 | 2 | AY.98.1 | 0.000097 |
S | 80 | D80A | gAt | gCt | 2 | 2 | AY.98.1 | 0.000097 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.99.2 | 0.000184 |
S | 80 | D80D | gaT | gaC | 2 | 2 | AZ.3 | 0.00304 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B | 0.000256 |
S | 80 | D80N | Gat | Aat | 2 | 2 | B | 0.000256 |
S | 80 | D80S | GAt | TCt | 1 | 2 | B.1 | 0.000009 |
S | 80 | D80S | GAT | TCA | 1 | 2 | B.1 | 0.000009 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.10 | 0.00223 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.101 | 0.02 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.198 | 0.002937 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.207 | 0.002364 |
S | 80 | D80V | gAt | gTt | 2 | 2 | B.1.1.214 | 0.000111 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.219 | 0.01 |
S | 80 | D80N | Gat | Aat | 2 | 2 | B.1.1.263 | 0.003115 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.312 | 0.003824 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.316 | 0.00185 |
S | 80 | D80N | Gat | Aat | 2 | 2 | B.1.1.318 | 0.000604 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.318 | 0.000604 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.344 | 0.021505 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.348 | 0.001592 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.349 | 0.020619 |
S | 80 | D80H | Gat | Cat | 2 | 2 | B.1.1.374 | 0.004751 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.412 | 0.015267 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 80 | D80N | Gat | Aat | 2 | 2 | B.1.1.519 | 0.000079 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B.1.1.526 | 0.007092 |
S | 80 | D80D | gaT | gaC | 2 | 2 | B.1.1.63 | 0.000772 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.70 | 0.000682 |
S | 80 | D80V | gAt | gTt | 2 | 2 | B.1.160 | 0.000062 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B.1.177 | 0.000026 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.177.33 | 0.003289 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.177.56 | 0.001335 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B.1.177.7 | 0.00033 |
S | 80 | D80D | gaT | gaC | 2 | 2 | B.1.177.73 | 0.001133 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.177.73 | 0.001133 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.177.83 | 0.002963 |
S | 80 | D80del | GAT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B.1.214 | 0.007326 |
S | 80 | D80D | gaT | gaC | 2 | 2 | B.1.221 | 0.000142 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.243 | 0.000139 |
S | 80 | D80E | gaT | gaA | 2 | 2 | B.1.243 | 0.000139 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.243.1 | 0.044444 |
S | 80 | D80D | gaT | gaC | 2 | 2 | B.1.258.11 | 0.000793 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.260 | 0.006689 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.336 | 0.004878 |
S | 80 | D80N | Gat | Aat | 2 | 2 | B.1.36 | 0.000292 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B.1.36 | 0.000292 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.36 | 0.000292 |
S | 80 | D80D | gaT | gaC | 2 | 2 | B.1.36.33 | 0.015152 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.413 | 0.008511 |
S | 80 | D80N | Gat | Aat | 2 | 2 | B.1.422 | 0.001625 |
S | 80 | D80H | Gat | Cat | 2 | 2 | B.1.427 | 0.000101 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.428 | 0.002041 |
S | 80 | D80D | gaT | gaC | 2 | 2 | B.1.474 | 0.003802 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B.1.525 | 0.000226 |
S | 80 | D80del | GAT | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.560 | 0.009259 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.575 | 0.000607 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.588.1 | 0.076923 |
S | 80 | D80H | Gat | Cat | 2 | 2 | B.1.596 | 0.000174 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.597 | 0.009259 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.609 | 0.000959 |
S | 80 | D80A | gAt | gCt | 2 | 2 | B.1.617.1 | 0.000258 |
S | 80 | D80E | gaT | gaA | 1 | 2 | B.1.617.1 | 0.000129 |
S | 80 | D80E | gaT | gaG | 1 | 2 | B.1.617.1 | 0.000129 |
S | 80 | D80G | gAt | gGt | 2 | 2 | B.1.623 | 0.001073 |
S | 80 | D80D | gaT | gaC | 2 | 2 | B.1.628 | 0.000705 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.628 | 0.000705 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | C.16 | 0.002121 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | C.36 | 0.001821 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | C.36.3 | 0.001134 |
S | 80 | D80N | Gat | Aat | 2 | 2 | C.37 | 0.000232 |
S | 80 | D80H | Gat | Cat | 2 | 2 | C.37 | 0.000232 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | N.5 | 0.003534 |
S | 80 | D80E | gaT | gaG | 2 | 2 | P.1 | 0.000032 |
S | 80 | D80G | gAt | gGt | 2 | 2 | P.1.1 | 0.000635 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | P.1.7 | 0.000639 |
S | 80 | D80D | gaT | gaC | 2 | 2 | P.1.9 | 0.009615 |
S | 80 | D80D | gaT | gaC | 2 | 2 | P.6 | 0.006289 |
S | 80 | D80D | gaT | gaC | 2 | 2 | Q.3 | 0.00029 |
S | 80 | D80A | gAt | gCt | 2 | 2 | R.1 | 0.00018 |
S | 80 | D80del | GAT | --- | 2 | 2 | R.1 | 0.00018 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A | 0.000387 |
S | 80 | D80D | gaT | gaC | 1 | 1 | A.1 | 0.000282 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A.11 | 0.058824 |
S | 80 | D80H | Gat | Cat | 1 | 1 | A.2.5 | 0.000499 |
S | 80 | D80N | Gat | Aat | 1 | 1 | A.2.5 | 0.000499 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A.2.5.2 | 0.001572 |
S | 80 | D80A | gAt | gCt | 1 | 1 | A.23.1 | 0.000704 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A.28 | 0.002646 |
S | 80 | D80X | GaT | TaA | 1 | 1 | All | 0 |
S | 80 | D80L | GAt | CTt | 1 | 1 | All | 0 |
S | 80 | D80K | GaT | AaA | 1 | 1 | All | 0 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AU.3 | 0.00211 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.10 | 0.00053 |
S | 80 | D80H | Gat | Cat | 1 | 1 | AY.100 | 0.000046 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.101 | 0.00049 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.101 | 0.00049 |
S | 80 | D80E | gaT | gaG | 1 | 1 | AY.103 | 0.000006 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.104 | 0.001984 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.105 | 0.000643 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.105 | 0.000643 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.107 | 0.000466 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.107 | 0.000466 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.108 | 0.001103 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.108 | 0.001103 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.11 | 0.001339 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.110 | 0.000113 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.110 | 0.000113 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.111 | 0.000183 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.113 | 0.000142 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.115 | 0.005208 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.116 | 0.000287 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.116.1 | 0.000311 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.116.1 | 0.000311 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.117 | 0.000085 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.119 | 0.000035 |
S | 80 | D80E | gaT | gaA | 1 | 1 | AY.119 | 0.000035 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.12 | 0.000316 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.12 | 0.000316 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.12 | 0.000316 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.12 | 0.000316 |
S | 80 | D80E | gaT | gaG | 1 | 1 | AY.120 | 0.000037 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.120 | 0.000037 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.120 | 0.000037 |
S | 80 | D80H | Gat | Cat | 1 | 1 | AY.120 | 0.000037 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.121 | 0.000135 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.121 | 0.000135 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.121 | 0.000135 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.14 | 0.000088 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.15 | 0.002222 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.16.1 | 0.00047 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.16.1 | 0.00047 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.2 | 0.000356 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.22 | 0.002092 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.23.1 | 0.000417 |
S | 80 | D80V | gAt | gTt | 1 | 1 | AY.25 | 0.000006 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.25 | 0.000006 |
S | 80 | D80L | GAt | CTt | 1 | 1 | AY.26 | 0.000028 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.28 | 0.00189 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.29.1 | 0.000221 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.3.1 | 0.000085 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.30 | 0.000396 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.30 | 0.000396 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.30 | 0.000396 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.32 | 0.000532 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.34 | 0.000097 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.34 | 0.000097 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.36 | 0.000148 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.36 | 0.000148 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.36 | 0.000148 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.39 | 0.000025 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.39.1 | 0.00004 |
S | 80 | D80del2 | gAT | g-- | 1 | 1 | AY.4 | 0.000002 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.4.4 | 0.000409 |
S | 80 | D80E | gaT | gaG | 1 | 1 | AY.41 | 0.000294 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.41 | 0.000294 |
S | 80 | D80H | Gat | Cat | 1 | 1 | AY.43 | 0.000004 |
S | 80 | D80del1 | gaT | ga- | 1 | 1 | AY.44 | 0.000006 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.44 | 0.000006 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.45 | 0.000122 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.45 | 0.000122 |
S | 80 | D80H | Gat | Cat | 1 | 1 | AY.46 | 0.000104 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.46.1 | 0.001027 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.46.6 | 0.000072 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.46.6 | 0.000072 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.46.6 | 0.000072 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.47 | 0.000031 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.47 | 0.000031 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.48 | 0.000465 |
S | 80 | D80H | Gat | Cat | 1 | 1 | AY.5 | 0.000021 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.5.3 | 0.000337 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.52 | 0.000814 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.52 | 0.000814 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.53 | 0.000288 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.55 | 0.000917 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.55 | 0.000917 |
S | 80 | D80E | gaT | gaA | 1 | 1 | AY.58 | 0.000907 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.59 | 0.00053 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.59 | 0.00053 |
S | 80 | D80E | gaT | gaA | 1 | 1 | AY.6 | 0.000041 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.61 | 0.000105 |
S | 80 | D80H | Gat | Cat | 1 | 1 | AY.61 | 0.000105 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.62 | 0.000436 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.63 | 0.000387 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.64 | 0.000595 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.67 | 0.000464 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.67 | 0.000464 |
S | 80 | D80V | gAt | gTt | 1 | 1 | AY.69 | 0.000187 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.7.1 | 0.000113 |
S | 80 | D80del1 | Gat | -at | 1 | 1 | AY.70 | 0.000209 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.70 | 0.000209 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.71 | 0.000475 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.72 | 0.001361 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.75 | 0.000056 |
S | 80 | D80K | GaT | AaA | 1 | 1 | AY.75 | 0.000056 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.76 | 0.004831 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.77 | 0.001127 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.77 | 0.001127 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.79 | 0.001211 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.8 | 0.000606 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.8 | 0.000606 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.81 | 0.001992 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.85 | 0.000427 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.85 | 0.000427 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.85 | 0.000427 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.86 | 0.00083 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.87 | 0.000833 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.88 | 0.000884 |
S | 80 | D80E | gaT | gaA | 1 | 1 | AY.9 | 0.000068 |
S | 80 | D80E | gaT | gaA | 1 | 1 | AY.9.2 | 0.000037 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.9.2 | 0.000037 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.91 | 0.00073 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.94 | 0.000443 |
S | 80 | D80E | gaT | gaA | 1 | 1 | AY.94 | 0.000443 |
S | 80 | D80A | gAt | gCt | 1 | 1 | AY.94 | 0.000443 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.95 | 0.000761 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.97 | 0.001701 |
S | 80 | D80H | Gat | Cat | 1 | 1 | AY.98 | 0.000079 |
S | 80 | D80D | gaT | gaC | 1 | 1 | AY.98.1 | 0.000048 |
S | 80 | D80N | Gat | Aat | 1 | 1 | AY.98.1 | 0.000048 |
S | 80 | D80del | GAT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 80 | D80G | gAt | gGt | 1 | 1 | AY.99.2 | 0.000092 |
S | 80 | D80del | GAT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 80 | D80del1 | gaT | ga- | 1 | 1 | B.1 | 0.000009 |
S | 80 | D80E | gaT | gaG | 1 | 1 | B.1 | 0.000009 |
S | 80 | D80V | gAt | gTt | 1 | 1 | B.1.1 | 0.000018 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.1 | 0.000327 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.117 | 0.009709 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.135 | 0.004695 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.141 | 0.002012 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.161 | 0.003534 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.171 | 0.003676 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.192 | 0.002309 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.1.194 | 0.00495 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.203 | 0.016949 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.216 | 0.00089 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.220 | 0.001859 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.222 | 0.000204 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.269 | 0.001353 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.277 | 0.000759 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.28 | 0.000311 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.282 | 0.011628 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.291 | 0.000742 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.1.301 | 0.001179 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.301 | 0.001179 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.306 | 0.000438 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.306 | 0.000438 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.31 | 0.066667 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.329 | 0.003846 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.33 | 0.000421 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.334 | 0.016393 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.37 | 0.000193 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.372 | 0.000689 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.372 | 0.000689 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.378 | 0.007299 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.378 | 0.007299 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.389 | 0.006061 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.404 | 0.015873 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.409 | 0.002833 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.409 | 0.002833 |
S | 80 | D80V | gAt | gTt | 1 | 1 | B.1.1.412 | 0.007634 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.413 | 0.006897 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.1.413 | 0.006897 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.416 | 0.000905 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.416 | 0.000905 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.420 | 0.001006 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.432 | 0.001266 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.434 | 0.000349 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.1.464 | 0.001473 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.52 | 0.012195 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.521 | 0.005348 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.1.523 | 0.001563 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.1.523 | 0.001563 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.1.524 | 0.020833 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.63 | 0.000386 |
S | 80 | D80del2 | gAT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.99 | 0.02381 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.110.3 | 0.000718 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.111 | 0.001175 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.111 | 0.001175 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.12 | 0.008 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.139 | 0.000733 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.139 | 0.000733 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.140 | 0.018868 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.142 | 0.002899 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.157 | 0.002985 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 80 | D80V | gAt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.169 | 0.014925 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.170 | 0.00431 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.177 | 0.000013 |
S | 80 | D80V | gAt | gTt | 1 | 1 | B.1.177 | 0.000013 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.15 | 0.000631 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.177.18 | 0.00116 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.177.21 | 0.000076 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.177.21 | 0.000076 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.24 | 0.001295 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.31 | 0.011494 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.177.33 | 0.001645 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.40 | 0.005155 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.177.42 | 0.000894 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.42 | 0.000894 |
S | 80 | D80E | gaT | gaA | 1 | 1 | B.1.177.43 | 0.001477 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.55 | 0.002331 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.177.57 | 0.000281 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.6 | 0.000977 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.177.65 | 0.000665 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.73 | 0.000566 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.177.74 | 0.015152 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.86 | 0.000183 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.182 | 0.007246 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.214 | 0.003663 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.215 | 0.009615 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.221 | 0.000071 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.221 | 0.000071 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.222 | 0.001692 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.231 | 0.032258 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.236 | 0.002053 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.240 | 0.000216 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.241 | 0.000812 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.258 | 0.000067 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.258.14 | 0.00098 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.280 | 0.007143 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.305 | 0.002151 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.311 | 0.000275 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.311 | 0.000275 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.320 | 0.001245 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.323 | 0.020833 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.324 | 0.001605 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.340 | 0.004292 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.351 | 0.00003 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.36 | 0.000146 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.36 | 0.000146 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.36.22 | 0.001208 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.36.29 | 0.000517 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.36.35 | 0.002604 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.36.8 | 0.001 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.367 | 0.000792 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.370 | 0.008 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.378 | 0.006849 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.381 | 0.007812 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.387 | 0.04 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.399 | 0.001934 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.40 | 0.019608 |
S | 80 | D80V | gAt | gTt | 1 | 1 | B.1.400 | 0.000429 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.401 | 0.008197 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.402 | 0.009804 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.411 | 0.003704 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.422 | 0.000812 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.423 | 0.010204 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.425 | 0.002994 |
S | 80 | D80E | gaT | gaA | 1 | 1 | B.1.427 | 0.00005 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.427 | 0.00005 |
S | 80 | D80E | gaT | gaA | 1 | 1 | B.1.429 | 0.000024 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.438 | 0.006536 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.438.1 | 0.000107 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.456 | 0.003268 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.471 | 0.002732 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.471 | 0.002732 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.474 | 0.001901 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.524 | 0.001406 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.525 | 0.000113 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.525 | 0.000113 |
S | 80 | D80V | gAT | gTA | 1 | 1 | B.1.525 | 0.000113 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.533 | 0.009615 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.551 | 0.00129 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.568 | 0.001111 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.576 | 0.000907 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.577 | 0.000687 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.580 | 0.004065 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.588 | 0.00091 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.596 | 0.000087 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.596 | 0.000087 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.599 | 0.00365 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.600 | 0.005848 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.600 | 0.005848 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.609 | 0.000479 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.609 | 0.000479 |
S | 80 | D80N | Gat | Aat | 1 | 1 | B.1.612 | 0.002653 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.612 | 0.002653 |
S | 80 | D80D | gaT | gaC | 1 | 1 | B.1.617.1 | 0.000129 |
S | 80 | D80X | GaT | TaA | 1 | 1 | B.1.617.1 | 0.000129 |
S | 80 | D80del2 | GAT | --N | 1 | 1 | B.1.617.2 | 0.000004 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.619 | 0.000871 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.620 | 0.000946 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.1.620 | 0.000946 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.621 | 0.000089 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.621.1 | 0.000506 |
S | 80 | D80E | gaT | gaG | 1 | 1 | B.1.625 | 0.002353 |
S | 80 | D80H | Gat | Cat | 1 | 1 | B.1.627 | 0.00202 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.628 | 0.000352 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.630 | 0.005236 |
S | 80 | D80G | gAt | gGt | 1 | 1 | B.1.631 | 0.003367 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.9 | 0.006173 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.3.1 | 0.001658 |
S | 80 | D80A | gAt | gCt | 1 | 1 | B.35 | 0.007812 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.52 | 0.010101 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.6 | 0.00091 |
S | 80 | D80del | GAT | --- | 1 | 1 | B.61 | 0.005747 |
S | 80 | D80A | gAt | gCt | 1 | 1 | C.1 | 0.002392 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | C.1 | 0.002392 |
S | 80 | D80A | gAt | gCt | 1 | 1 | C.16 | 0.00106 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | C.18 | 0.002591 |
S | 80 | D80A | gAt | gCt | 1 | 1 | C.2 | 0.016129 |
S | 80 | D80D | gaT | gaC | 1 | 1 | C.26 | 0.007353 |
S | 80 | D80del | GAT | --- | 1 | 1 | C.35 | 0.000774 |
S | 80 | D80del | GAT | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 80 | D80D | gaT | gaC | 1 | 1 | C.37 | 0.000116 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | C.37.1 | 0.002618 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | N.9 | 0.005952 |
S | 80 | D80H | Gat | Cat | 1 | 1 | P.1 | 0.000016 |
S | 80 | D80del1 | gaT | ga- | 1 | 1 | P.1 | 0.000016 |
S | 80 | D80N | Gat | Aat | 1 | 1 | P.1.1 | 0.000318 |
S | 80 | D80del | GAT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.1.10.1 | 0.00813 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.1.13 | 0.000898 |
S | 80 | D80G | gAt | gGt | 1 | 1 | P.1.14 | 0.000048 |
S | 80 | D80D | gaT | gaC | 1 | 1 | P.1.15 | 0.000232 |
S | 80 | D80G | gAt | gGt | 1 | 1 | P.1.17 | 0.000162 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.1.6 | 0.001946 |
S | 80 | D80A | gAt | gCt | 1 | 1 | P.2 | 0.000187 |
S | 80 | D80H | Gat | Cat | 1 | 1 | P.2 | 0.000187 |
S | 80 | D80A | gAt | gCt | 1 | 1 | P.3 | 0.001595 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.7 | 0.004367 |
S | 80 | D80del | GAT | --- | 1 | 1 | Q.1 | 0.000126 |
S | 80 | D80G | gAt | gGt | 1 | 1 | Q.1 | 0.000126 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | Q.1 | 0.000126 |
S | 80 | D80G | gAt | gGt | 1 | 1 | Q.8 | 0.000165 |
S | 80 | D80N | Gat | Aat | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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