CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 796 | D796H | nonsyn | Gat | Cat | 7882 | 7882 | 1 | 23948-23950 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 796 | D796H | Gat | Cat | 7882 | 7882 | All | 0.001508 |
S | 796 | D796H | Gat | Cat | 3190 | 3190 | B.1.1.318 | 0.962583 |
S | 796 | D796H | Gat | Cat | 1213 | 1213 | AZ.2 | 0.995895 |
S | 796 | D796H | Gat | Cat | 1151 | 1151 | AZ.1 | 0.998265 |
S | 796 | D796H | Gat | Cat | 637 | 637 | AZ.3 | 0.968085 |
S | 796 | D796H | Gat | Cat | 290 | 290 | AZ.4 | 0.973154 |
S | 796 | D796H | Gat | Cat | 279 | 279 | AZ.5 | 0.978947 |
S | 796 | D796H | Gat | Cat | 181 | 181 | B.1.1 | 0.003284 |
S | 796 | D796H | Gat | Cat | 123 | 123 | AZ.2.1 | 1 |
S | 796 | D796H | Gat | Cat | 118 | 118 | AZ.6 | 0.991597 |
S | 796 | D796H | Gat | Cat | 65 | 65 | B.1.1.7 | 0.000058 |
S | 796 | D796H | Gat | Cat | 58 | 58 | B.1.177 | 0.000764 |
S | 796 | D796H | Gat | Cat | 52 | 52 | AY.4 | 0.000081 |
S | 796 | D796H | Gat | Cat | 47 | 47 | AY.4.5 | 0.005052 |
S | 796 | D796H | Gat | Cat | 43 | 43 | B.1.177.6 | 0.041992 |
S | 796 | D796H | Gat | Cat | 31 | 31 | B.1 | 0.000284 |
S | 796 | D796H | Gat | Cat | 29 | 29 | B.1.617.2 | 0.000109 |
S | 796 | D796H | Gat | Cat | 27 | 27 | AY.25 | 0.000162 |
S | 796 | D796H | Gat | Cat | 24 | 24 | AY.116.1 | 0.007474 |
S | 796 | D796H | Gat | Cat | 23 | 23 | B.1.525 | 0.002603 |
S | 796 | D796H | Gat | Cat | 20 | 20 | C.35 | 0.01548 |
S | 796 | D796H | Gat | Cat | 18 | 18 | AY.44 | 0.00011 |
S | 796 | D796H | Gat | Cat | 17 | 17 | B.1.633 | 0.708333 |
S | 796 | D796H | Gat | Cat | 16 | 16 | AY.120 | 0.000595 |
S | 796 | D796H | Gat | Cat | 13 | 13 | AY.45 | 0.001582 |
S | 796 | D796H | Gat | Cat | 13 | 13 | B.1.429 | 0.000306 |
S | 796 | D796H | Gat | Cat | 11 | 11 | B.1.2 | 0.000097 |
S | 796 | D796H | Gat | Cat | 11 | 11 | B.1.526 | 0.000259 |
S | 796 | D796H | Gat | Cat | 9 | 9 | B.1.351 | 0.000268 |
S | 796 | D796H | Gat | Cat | 8 | 8 | AY.9.2 | 0.000294 |
S | 796 | D796H | Gat | Cat | 8 | 8 | B.1.452 | 0.109589 |
S | 796 | D796H | Gat | Cat | 7 | 7 | AY.29 | 0.00011 |
S | 796 | D796H | Gat | Cat | 7 | 7 | AY.39 | 0.000173 |
S | 796 | D796H | Gat | Cat | 7 | 7 | B.1.9.5 | 0.039773 |
S | 796 | D796H | Gat | Cat | 6 | 6 | AY.3 | 0.00006 |
S | 796 | D796H | Gat | Cat | 6 | 6 | AY.43 | 0.000027 |
S | 796 | D796H | Gat | Cat | 6 | 6 | B.1.1.1 | 0.00196 |
S | 796 | D796H | Gat | Cat | 5 | 5 | B.1.619 | 0.004355 |
S | 796 | D796H | Gat | Cat | 4 | 4 | AT.1 | 0.020513 |
S | 796 | D796H | Gat | Cat | 4 | 4 | AY.5 | 0.000083 |
S | 796 | D796H | Gat | Cat | 4 | 4 | B.1.617.1 | 0.000516 |
S | 796 | D796H | Gat | Cat | 3 | 3 | AY.1 | 0.001187 |
S | 796 | D796H | Gat | Cat | 3 | 3 | AY.118 | 0.000188 |
S | 796 | D796H | Gat | Cat | 3 | 3 | AY.20 | 0.000117 |
S | 796 | D796H | Gat | Cat | 3 | 3 | AY.26 | 0.000085 |
S | 796 | D796H | Gat | Cat | 3 | 3 | AY.33 | 0.0002 |
S | 796 | D796H | Gat | Cat | 3 | 3 | AY.47 | 0.000093 |
S | 796 | D796H | Gat | Cat | 3 | 3 | B.1.1.8 | 0.010753 |
S | 796 | D796H | Gat | Cat | 3 | 3 | B.1.160 | 0.000094 |
S | 796 | D796H | Gat | Cat | 3 | 3 | B.1.403 | 0.009804 |
S | 796 | D796H | Gat | Cat | 3 | 3 | B.1.576 | 0.00272 |
S | 796 | D796H | Gat | Cat | 3 | 3 | P.1 | 0.000047 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.102 | 0.000053 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.103 | 0.000012 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.121 | 0.000271 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.14 | 0.000176 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.4.2 | 0.000043 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.42 | 0.00008 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.51 | 0.001818 |
S | 796 | D796H | Gat | Cat | 2 | 2 | AY.64 | 0.00119 |
S | 796 | D796H | Gat | Cat | 2 | 2 | B.1.258.17 | 0.000208 |
S | 796 | D796H | Gat | Cat | 2 | 2 | B.1.36 | 0.000292 |
S | 796 | D796H | Gat | Cat | 2 | 2 | B.1.36.17 | 0.000988 |
S | 796 | D796H | Gat | Cat | 2 | 2 | B.1.36.24 | 0.012346 |
S | 796 | D796H | Gat | Cat | 2 | 2 | B.1.438.1 | 0.000215 |
S | 796 | D796H | Gat | Cat | 2 | 2 | B.1.595 | 0.000522 |
S | 796 | D796H | Gat | Cat | 2 | 2 | B.1.596 | 0.000174 |
S | 796 | D796H | Gat | Cat | 2 | 2 | C.37 | 0.000232 |
S | 796 | D796H | Gat | Cat | 2 | 2 | P.1.12 | 0.000968 |
S | 796 | D796H | Gat | Cat | 2 | 2 | P.1.14 | 0.000096 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.108 | 0.001103 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.117 | 0.000085 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.120.2 | 0.001285 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.16.1 | 0.00047 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.23 | 0.00007 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.59 | 0.00053 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.63 | 0.000387 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.69 | 0.000187 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.75 | 0.000056 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.85 | 0.000427 |
S | 796 | D796H | Gat | Cat | 1 | 1 | AY.86 | 0.00083 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.1.192 | 0.002309 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.1.28 | 0.000311 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.1.50 | 0.000679 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.1.523 | 0.001563 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.170 | 0.00431 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.177.16 | 0.000664 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.177.4 | 0.000211 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.177.73 | 0.000566 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.177.86 | 0.000183 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.243 | 0.00007 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.258 | 0.000067 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.267 | 0.018519 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.298 | 0.002114 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.351.2 | 0.000303 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.540 | 0.009709 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.575 | 0.000303 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.588 | 0.00091 |
S | 796 | D796H | Gat | Cat | 1 | 1 | B.1.623 | 0.000536 |
S | 796 | D796H | Gat | Cat | 1 | 1 | P.1.17 | 0.000162 |
S | 796 | D796H | Gat | Cat | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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