CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 795

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S795K795RnonsynaAaaGa10361036123945-23947
S795K795NnonsynaaAaaC4813710.7713123945-23947
S795K795NnonsynaaAaaT4811100.2286923945-23947
S795K795KsynaaAaaG464464123945-23947
S795K795deldelAAA---8888123945-23947
S795K795EnonsynAaaGaa3636123945-23947
S795K795InonsynaAaaTa2626123945-23947
S795K795TnonsynaAaaCa18170.94444423945-23947
S795K795TnonsynaAAaCC1810.055555623945-23947
S795K795del1delAaa-aa15110.73333323945-23947
S795K795del1delaaAaa-1540.26666723945-23947
S795K795XnonsynAaaTaa12100.83333323945-23947
S795K795XnonsynAaATaG1220.16666723945-23947
S795K795QnonsynAaaCaa44123945-23947
S795K795YnonsynAaATaT22123945-23947
S795K795del2delaAAa--11123945-23947

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S795K795RaAaaGa10361036All0.000198
S795K795RaAaaGa950950B.1.1.70.00085
S795K795NaaAaaC371481All0.000071
S795K795NaaAaaT110481All0.000021
S795K795KaaAaaG464464All0.000089
S795K795NaaAaaC327327R.10.029433
S795K795KaaAaaG158158B.1.1.70.000141
S795K795KaaAaaG108108B.1.5010.794118
S795K795delAAA---8888All0.000017
S795K795KaaAaaG8686B.1.4080.317343
S795K795NaaAaaT4849AY.440.000292
S795K795NaaAaaC149AY.440.000006
S795K795KaaAaaG4747B.10.00043
S795K795EAaaGaa3636All0.000007
S795K795RaAaaGa2828B.1.617.20.000105
S795K795IaAaaTa2626All0.000005
S795K795NaaAaaT1619B.1.1.70.000014
S795K795NaaAaaC319B.1.1.70.000003
S795K795TaAaaCa1718All0.000003
S795K795TaAAaCC118All0
S795K795IaAaaTa1616AY.40.000025
S795K795del1Aaa-aa1115All0.000002
S795K795del1aaAaa-415All0.000001
S795K795RaAaaGa1313AY.1000.000598
S795K795NaaAaaT1113AY.250.000066
S795K795NaaAaaC213AY.250.000012
S795K795XAaaTaa1012All0.000002
S795K795XAaATaG212All0
S795K795NaaAaaT1010AY.1030.000062
S795K795delAAA---1010B.1.1.70.000009
S795K795delAAA---1010B.1.6210.000885
S795K795EAaaGaa88B.1.1.70.000007
S795K795TaAaaCa88B.1.1.70.000007
S795K795KaaAaaG77AY.40.000011
S795K795NaaAaaC67AY.430.000027
S795K795NaaAaaT17AY.430.000004
S795K795KaaAaaG77B.1.1770.000092
S795K795NaaAaaT66AY.340.000582
S795K795RaAaaGa66AY.980.000474
S795K795KaaAaaG66B.1.617.20.000023
S795K795NaaAaaC66B.400.002186
S795K795delAAA---66P.1.150.001394
S795K795RaAaaGa55AY.430.000022
S795K795NaaAaaC45AY.99.20.000369
S795K795NaaAaaT15AY.99.20.000092
S795K795delAAA---55B.10.000046
S795K795delAAA---55P.10.000079
S795K795XAaaTaa240.111111
S795K795XAaATaG240.111111
S795K795QAaaCaa44All0.000001
S795K795RaAaaGa44AY.1030.000025
S795K795EAaaGaa44AY.40.000006
S795K795NaaAaaT44AY.4.2.10.000596
S795K795delAAA---44AY.430.000018
S795K795KaaAaaG44AY.50.000083
S795K795KaaAaaG44AZ.10.003469
S795K795RaAaaGa33AY.1020.00008
S795K795delAAA---33AY.250.000018
S795K795KaaAaaG33AY.250.000018
S795K795NaaAaaC23AY.290.000032
S795K795NaaAaaT13AY.290.000016
S795K795NaaAaaC23B.10.000018
S795K795NaaAaaT13B.10.000009
S795K795IaAaaTa33B.1.1.70.000003
S795K795KaaAaaG33B.1.1430.06383
S795K795NaaAaaT33B.1.177.380.03125
S795K795del1Aaa-aa33B.1.20.000026
S795K795delAAA---33B.1.617.20.000011
S795K795EAaaGaa33B.1.617.20.000011
S795K795TaAaaCa23B.1.617.20.000008
S795K795NaaAaaT23B.1.617.20.000008
S795K795TaAAaCC13B.1.617.20.000004
S795K795NaaAaaC13B.1.617.20.000004
S795K795RaAaaGa33P.1.140.000143
S795K795NaaAaaC33P.1.140.000143
S795K795YAaATaT220.111111
S795K795YAaATaT22All0
S795K795KaaAaaG22AY.1020.000053
S795K795EAaaGaa22AY.1030.000012
S795K795KaaAaaG22AY.1030.000012
S795K795NaaAaaC22AY.1070.000932
S795K795KaaAaaG22AY.260.000057
S795K795RaAaaGa22AY.260.000057
S795K795delAAA---22AY.34.10.00102
S795K795KaaAaaG22AY.430.000009
S795K795EAaaGaa22AY.430.000009
S795K795delAAA---22AY.440.000012
S795K795EAaaGaa22AY.46.40.000329
S795K795delAAA---22AY.750.000112
S795K795NaaAaaC22AY.9.10.000167
S795K795EAaaGaa22B.10.000018
S795K795del1Aaa-aa22B.10.000018
S795K795XAaaTaa22B.10.000018
S795K795RaAaaGa22B.10.000018
S795K795delAAA---22B.1.10.000036
S795K795XAaaTaa22B.1.1.70.000002
S795K795KaaAaaG22B.1.1600.000062
S795K795EAaaGaa22B.1.20.000018
S795K795EAaaGaa22B.1.5260.000047
S795K795IaAaaTa22B.1.617.20.000008
S795K795NaaAaaC22C.370.000232
S795K795KaaAaaG22P.1.140.000096
S795K795delAAA---22P.1.70.000639
S795K795RaAaaGa22Q.40.00091
S795K795delAAA---11A0.000387
S795K795EAaaGaa11A0.000387
S795K795del2aAAa--11All0
S795K795del1Aaa-aa11AY.10.000396
S795K795delAAA---11AY.100.00053
S795K795TaAaaCa11AY.1000.000046
S795K795TaAaaCa11AY.1010.00049
S795K795TaAaaCa11AY.1030.000006
S795K795XAaaTaa11AY.1030.000006
S795K795delAAA---11AY.1030.000006
S795K795IaAaaTa11AY.1030.000006
S795K795RaAaaGa11AY.1170.000085
S795K795NaaAaaT11AY.1190.000035
S795K795delAAA---11AY.1200.000037
S795K795EAaaGaa11AY.230.00007
S795K795delAAA---11AY.240.000431
S795K795EAaaGaa11AY.250.000006
S795K795RaAaaGa11AY.250.000006
S795K795delAAA---11AY.290.000016
S795K795TaAaaCa11AY.290.000016
S795K795KaaAaaG11AY.290.000016
S795K795RaAaaGa11AY.30.00001
S795K795del1aaAaa-11AY.30.00001
S795K795NaaAaaC11AY.30.00001
S795K795delAAA---11AY.30.00001
S795K795NaaAaaT11AY.300.000396
S795K795IaAaaTa11AY.320.000532
S795K795RaAaaGa11AY.350.000233
S795K795RaAaaGa11AY.380.000499
S795K795RaAaaGa11AY.40.000002
S795K795QAaaCaa11AY.40.000002
S795K795NaaAaaT11AY.40.000002
S795K795RaAaaGa11AY.4.20.000022
S795K795KaaAaaG11AY.4.30.000842
S795K795KaaAaaG11AY.420.00004
S795K795EAaaGaa11AY.420.00004
S795K795NaaAaaC11AY.420.00004
S795K795del1aaAaa-11AY.430.000004
S795K795KaaAaaG11AY.440.000006
S795K795IaAaaTa11AY.440.000006
S795K795TaAaaCa11AY.450.000122
S795K795KaaAaaG11AY.460.000104
S795K795KaaAaaG11AY.46.40.000165
S795K795EAaaGaa11AY.470.000031
S795K795delAAA---11AY.680.000274
S795K795EAaaGaa11AY.75.10.00018
S795K795RaAaaGa11AY.840.000437
S795K795EAaaGaa11AY.860.00083
S795K795TaAaaCa11B.10.000009
S795K795NaaAaaT11B.1.10.000018
S795K795del1Aaa-aa11B.1.10.000018
S795K795RaAaaGa11B.1.10.000018
S795K795KaaAaaG11B.1.10.000018
S795K795delAAA---11B.1.1.1390.022727
S795K795NaaAaaC11B.1.1.2220.000204
S795K795delAAA---11B.1.1.2360.006897
S795K795KaaAaaG11B.1.1.2690.001353
S795K795TaAaaCa11B.1.1.2740.005051
S795K795delAAA---11B.1.1.2910.000742
S795K795delAAA---11B.1.1.3150.008475
S795K795delAAA---11B.1.1.3720.000689
S795K795delAAA---11B.1.1.4090.002833
S795K795RaAaaGa11B.1.1.4320.001266
S795K795del1Aaa-aa11B.1.1.4480.002033
S795K795delAAA---11B.1.1.5190.00004
S795K795del2aAAa--11B.1.1.70.000001
S795K795delAAA---11B.1.1400.018868
S795K795QAaaCaa11B.1.1450.052632
S795K795RaAaaGa11B.1.1460.004237
S795K795NaaAaaC11B.1.1600.000031
S795K795delAAA---11B.1.1600.000031
S795K795EAaaGaa11B.1.1770.000013
S795K795del1Aaa-aa11B.1.1770.000013
S795K795XAaaTaa11B.1.177.350.000691
S795K795EAaaGaa11B.1.177.40.000211
S795K795del1Aaa-aa11B.1.177.440.000519
S795K795RaAaaGa11B.1.177.60.000977
S795K795XAaaTaa11B.1.177.810.000189
S795K795NaaAaaT11B.1.177.860.000183
S795K795KaaAaaG11B.1.20.000009
S795K795IaAaaTa11B.1.20.000009
S795K795delAAA---11B.1.20.000009
S795K795RaAaaGa11B.1.20.000009
S795K795KaaAaaG11B.1.2060.000816
S795K795KaaAaaG11B.1.2360.002053
S795K795del1Aaa-aa11B.1.2390.001221
S795K795XAaaTaa11B.1.2430.00007
S795K795delAAA---11B.1.2580.000067
S795K795delAAA---11B.1.258.170.000104
S795K795delAAA---11B.1.3510.00003
S795K795NaaAaaT11B.1.3510.00003
S795K795RaAaaGa11B.1.360.000146
S795K795KaaAaaG11B.1.360.000146
S795K795delAAA---11B.1.36.180.00042
S795K795NaaAaaC11B.1.36.80.001
S795K795del1aaAaa-11B.1.4430.004673
S795K795NaaAaaC11B.1.4680.005714
S795K795KaaAaaG11B.1.4950.009091
S795K795NaaAaaC11B.1.5090.000866
S795K795QAaaCaa11B.1.5260.000024
S795K795delAAA---11B.1.5260.000024
S795K795delAAA---11B.1.5610.000397
S795K795KaaAaaG11B.1.5640.000426
S795K795RaAaaGa11B.1.5820.000491
S795K795delAAA---11B.1.5950.000261
S795K795KaaAaaG11B.1.5950.000261
S795K795KaaAaaG11B.1.5960.000087
S795K795KaaAaaG11B.1.5970.00463
S795K795QAaaCaa11B.1.6130.027027
S795K795KaaAaaG11B.1.617.10.000129
S795K795delAAA---11B.1.6200.000946
S795K795RaAaaGa11B.1.6370.000073
S795K795delAAA---11B.1.6380.052632
S795K795delAAA---11B.340.013699
S795K795NaaAaaC11B.4.50.011905
S795K795RaAaaGa11B.550.00295
S795K795delAAA---11C.370.000116
S795K795IaAaaTa11D.20.000075
S795K795KaaAaaG11D.20.000075
S795K795del1aaAaa-11K.30.006173
S795K795RaAaaGa11P.10.000016
S795K795delAAA---11P.1.130.000898
S795K795delAAA---11Q.20.000613
S795K795delAAA---11Q.80.000165