CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 791

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	791	T791I		nonsyn	aCa	aTa	8138	8137	0.999877	23933-23935
S	791	T791I		nonsyn	aCA	aTC	8138	1	0.00012288	23933-23935
S	791	T791T		syn	acA	acT	459	314	0.684096	23933-23935
S	791	T791T		syn	acA	acG	459	121	0.263617	23933-23935
S	791	T791T		syn	acA	acC	459	24	0.0522876	23933-23935
S	791	T791K		nonsyn	aCa	aAa	402	401	0.997512	23933-23935
S	791	T791K		nonsyn	aCA	aAG	402	1	0.00248756	23933-23935
S	791	T791P		nonsyn	Aca	Cca	94	94	1	23933-23935
S	791	T791del		del	ACA	---	88	88	1	23933-23935
S	791	T791A		nonsyn	Aca	Gca	87	87	1	23933-23935
S	791	T791N		nonsyn	aCA	aAT	11	10	0.909091	23933-23935
S	791	T791N		nonsyn	aCA	aAC	11	1	0.0909091	23933-23935
S	791	T791R		nonsyn	aCa	aGa	7	7	1	23933-23935
S	791	T791S		nonsyn	Aca	Tca	6	5	0.833333	23933-23935
S	791	T791S		nonsyn	AcA	TcT	6	1	0.166667	23933-23935
S	791	T791del1		del	acA	ac-	2	2	1	23933-23935

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	791	T791I	aCa	aTa	8137	8138	All	0.001556
S	791	T791I	aCA	aTC	1	8138	All	0
S	791	T791I	aCa	aTa	2985	2985	AY.12	0.943426
S	791	T791I	aCa	aTa	1870	1870	B.1.637	0.136646
S	791	T791I	aCa	aTa	1059	1059	B.1.1.7	0.000948
S	791	T791I	aCa	aTa	758	758	AY.43	0.003358
S	791	T791T	acA	acT	314	459	All	0.00006
S	791	T791T	acA	acG	121	459	All	0.000023
S	791	T791T	acA	acC	24	459	All	0.000005
S	791	T791K	aCa	aAa	401	402	All	0.000077
S	791	T791K	aCA	aAG	1	402	All	0
S	791	T791I	aCa	aTa	252	252	AY.4	0.000392
S	791	T791I	aCa	aTa	122	122	AY.9.2	0.004481
S	791	T791K	aCa	aAa	96	96	B.1.1.7	0.000086
S	791	T791T	acA	acT	94	95	B.1.617.2	0.000354
S	791	T791T	acA	acG	1	95	B.1.617.2	0.000004
S	791	T791P	Aca	Cca	94	94	All	0.000018
S	791	T791I	aCa	aTa	93	93	AY.44	0.000566
S	791	T791del	ACA	---	88	88	All	0.000017
S	791	T791A	Aca	Gca	87	87	All	0.000017
S	791	T791I	aCa	aTa	83	83	P.1	0.001308
S	791	T791T	acA	acT	52	72	P.1	0.000819
S	791	T791T	acA	acG	20	72	P.1	0.000315
S	791	T791K	aCa	aAa	65	65	AY.4	0.000101
S	791	T791K	aCa	aAa	63	63	AZ.2	0.051724
S	791	T791I	aCa	aTa	51	51	AY.103	0.000317
S	791	T791I	aCa	aTa	48	48	B.1	0.00044
S	791	T791I	aCa	aTa	44	44	B.1.617.2	0.000166
S	791	T791I	aCa	aTa	42	42	AY.29	0.000662
S	791	T791T	acA	acT	36	39	AY.43	0.000159
S	791	T791T	acA	acG	3	39	AY.43	0.000013
S	791	T791A	Aca	Gca	38	38	AY.103	0.000236
S	791	T791I	aCa	aTa	38	38	B.1.351	0.00113
S	791	T791T	acA	acG	32	35	AY.44	0.000195
S	791	T791T	acA	acT	3	35	AY.44	0.000018
S	791	T791I	aCa	aTa	32	32	AY.84	0.013998
S	791	T791I	aCa	aTa	32	32	B.1.177.21	0.002447
S	791	T791T	acA	acT	15	29	AY.4	0.000023
S	791	T791T	acA	acC	12	29	AY.4	0.000019
S	791	T791T	acA	acG	2	29	AY.4	0.000003
S	791	T791T	acA	acT	25	26	B.1.1.214	0.001386
S	791	T791T	acA	acG	1	26	B.1.1.214	0.000055
S	791	T791K	aCa	aAa	26	26	B.1.199	0.107438
S	791	T791I	aCa	aTa	25	25	AY.25	0.00015
S	791	T791P	Aca	Cca	25	25	B.1.1.7	0.000022
S	791	T791I	aCa	aTa	23	24	AY.3	0.000229
S	791	T791I	aCA	aTC	1	24	AY.3	0.00001
S	791	T791T	acA	acG	16	24	B.1.1.7	0.000014
S	791	T791T	acA	acT	6	24	B.1.1.7	0.000005
S	791	T791T	acA	acC	2	24	B.1.1.7	0.000002
S	791	T791T	acA	acT	22	23	AY.102	0.000583
S	791	T791T	acA	acG	1	23	AY.102	0.000027
S	791	T791K	aCa	aAa	23	23	AY.4.5	0.002472
S	791	T791I	aCa	aTa	23	23	B.1.595	0.006002
S	791	T791I	aCa	aTa	22	22	B.1.438.1	0.00236
S	791	T791K	aCa	aAa	21	21	B.1.617.2	0.000079
S	791	T791P	Aca	Cca	19	19	B.1.617.2	0.000072
S	791	T791I	aCa	aTa	18	18	B.1.177	0.000237
S	791	T791T	acA	acG	13	17	AY.103	0.000081
S	791	T791T	acA	acT	4	17	AY.103	0.000025
S	791	T791I	aCa	aTa	17	17	AY.118	0.001065
S	791	T791I	aCa	aTa	17	17	AY.42	0.000684
S	791	T791A	Aca	Gca	17	17	B.1.1.7	0.000015
S	791	T791I	aCa	aTa	16	16	B.1.177.60	0.003495
S	791	T791I	aCa	aTa	15	15	AY.46.6	0.001083
S	791	T791I	aCa	aTa	15	15	B.1.1	0.000272
S	791	T791I	aCa	aTa	15	15	B.1.2	0.000132
S	791	T791P	Aca	Cca	14	14	B.1.1	0.000254
S	791	T791I	aCa	aTa	14	14	B.1.177.86	0.002568
S	791	T791I	aCa	aTa	13	13	AY.39	0.000321
S	791	T791I	aCa	aTa	13	13	B.1.526	0.000306
S	791	T791T	acA	acT	12	12	AY.39	0.000297
S	791	T791I	aCa	aTa	12	12	Q.1	0.001516
S	791	T791N	aCA	aAT	10	11	All	0.000002
S	791	T791N	aCA	aAC	1	11	All	0
S	791	T791I	aCa	aTa	11	11	B.1.525	0.001245
S	791	T791N	aCA	aAT	10	10	AY.39	0.000247
S	791	T791I	aCa	aTa	10	10	AY.9.1	0.000837
S	791	T791del	ACA	---	10	10	B.1.621	0.000885
S	791	T791I	aCa	aTa	9	9	AY.47	0.00028
S	791	T791del	ACA	---	9	9	B.1.1.7	0.000008
S	791	T791I	aCa	aTa	8	8	AY.30	0.003166
S	791	T791P	Aca	Cca	8	8	B.1.2	0.00007
S	791	T791R	aCa	aGa	7	7	All	0.000001
S	791	T791T	acA	acT	4	7	AY.119	0.000141
S	791	T791T	acA	acG	3	7	AY.119	0.000106
S	791	T791I	aCa	aTa	7	7	AY.36	0.001037
S	791	T791I	aCa	aTa	7	7	B.1.1.33	0.002946
S	791	T791I	aCa	aTa	7	7	B.1.1.519	0.000278
S	791	T791I	aCa	aTa	7	7	B.1.429	0.000165
S	791	T791I	aCa	aTa	7	7	B.4	0.015453
S	791	T791T	acA	acG	7	7	P.1.7	0.002235
S	791	T791S	Aca	Tca	5	6	All	0.000001
S	791	T791S	AcA	TcT	1	6	All	0
S	791	T791I	aCa	aTa	6	6	AY.117	0.000507
S	791	T791I	aCa	aTa	6	6	AY.45	0.00073
S	791	T791K	aCa	aAa	5	6	B.1.160	0.000156
S	791	T791K	aCA	aAG	1	6	B.1.160	0.000031
S	791	T791K	aCa	aAa	6	6	B.1.2	0.000053
S	791	T791I	aCa	aTa	6	6	B.1.524	0.008439
S	791	T791I	aCa	aTa	6	6	B.1.575	0.00182
S	791	T791del	ACA	---	6	6	P.1.15	0.001394
S	791	T791I	aCa	aTa	5	5	AY.113	0.000712
S	791	T791I	aCa	aTa	5	5	AY.120	0.000186
S	791	T791I	aCa	aTa	5	5	AY.26	0.000142
S	791	T791I	aCa	aTa	5	5	AY.4.5	0.000537
S	791	T791K	aCa	aAa	5	5	AY.44	0.00003
S	791	T791I	aCa	aTa	5	5	AY.5.3	0.001687
S	791	T791I	aCa	aTa	5	5	AY.74	0.000578
S	791	T791K	aCa	aAa	5	5	AY.9	0.000338
S	791	T791I	aCa	aTa	5	5	AY.92	0.001436
S	791	T791I	aCa	aTa	5	5	B	0.000639
S	791	T791K	aCa	aAa	5	5	B.1	0.000046
S	791	T791del	ACA	---	5	5	B.1	0.000046
S	791	T791I	aCa	aTa	5	5	B.1.160	0.000156
S	791	T791I	aCa	aTa	5	5	B.1.214.2	0.002998
S	791	T791I	aCa	aTa	5	5	B.1.243	0.000348
S	791	T791T	acA	acT	4	5	B.1.351	0.000119
S	791	T791T	acA	acG	1	5	B.1.351	0.00003
S	791	T791I	aCa	aTa	5	5	B.1.596	0.000436
S	791	T791I	aCa	aTa	5	5	B.1.621	0.000443
S	791	T791del	ACA	---	5	5	P.1	0.000079
S	791	T791I	aCa	aTa	5	5	P.1.14	0.000239
S	791	T791I	aCa	aTa	4	4	A.21	0.01108
S	791	T791I	aCa	aTa	4	4	AY.1	0.001583
S	791	T791I	aCa	aTa	4	4	AY.23	0.000279
S	791	T791I	aCa	aTa	4	4	AY.33	0.000267
S	791	T791I	aCa	aTa	4	4	AY.39.1	0.000158
S	791	T791A	Aca	Gca	4	4	AY.4	0.000006
S	791	T791del	ACA	---	4	4	AY.43	0.000018
S	791	T791K	aCa	aAa	4	4	AY.8	0.002424
S	791	T791I	aCa	aTa	4	4	AY.95	0.003044
S	791	T791A	Aca	Gca	4	4	B.1	0.000037
S	791	T791T	acA	acC	4	4	B.1.2	0.000035
S	791	T791I	aCa	aTa	4	4	B.1.240	0.000862
S	791	T791I	aCa	aTa	4	4	B.1.369	0.001141
S	791	T791I	aCa	aTa	4	4	B.1.396	0.002823
S	791	T791I	aCa	aTa	4	4	B.1.427	0.000202
S	791	T791T	acA	acT	3	4	B.1.429	0.000071
S	791	T791T	acA	acG	1	4	B.1.429	0.000024
S	791	T791T	acA	acT	4	4	B.1.499	0.004202
S	791	T791I	aCa	aTa	4	4	B.1.628	0.001409
S	791	T791K	aCa	aAa	4	4	C.36.3	0.002269
S	791	T791I	aCa	aTa	4	4	C.37	0.000464
S	791	T791K	aCa	aAa	4	4	P.1	0.000063
S	791	T791I	aCa	aTa	4	4	P.1.7	0.001277
S	791	T791K	aCa	aAa	4	4	Q.4	0.001819
S	791	T791I	aCa	aTa	3	3	AY.106	0.001005
S	791	T791I	aCa	aTa	3	3	AY.119	0.000106
S	791	T791del	ACA	---	3	3	AY.25	0.000018
S	791	T791K	aCa	aAa	3	3	AY.3	0.00003
S	791	T791del	ACA	---	3	3	AY.34.1	0.00153
S	791	T791I	aCa	aTa	3	3	AY.4.2	0.000065
S	791	T791P	Aca	Cca	3	3	AY.43	0.000013
S	791	T791K	aCa	aAa	3	3	AY.43	0.000013
S	791	T791I	aCa	aTa	3	3	AY.46	0.000312
S	791	T791I	aCa	aTa	3	3	AY.5	0.000062
S	791	T791A	Aca	Gca	3	3	AY.5	0.000062
S	791	T791P	Aca	Cca	3	3	AY.6	0.000123
S	791	T791I	aCa	aTa	3	3	AY.7	0.000588
S	791	T791I	aCa	aTa	3	3	AY.73	0.001996
S	791	T791I	aCa	aTa	3	3	AY.75	0.000168
S	791	T791I	aCa	aTa	3	3	B.1.1.176	0.001318
S	791	T791I	aCa	aTa	3	3	B.1.1.214	0.000166
S	791	T791I	aCa	aTa	3	3	B.1.1.318	0.000905
S	791	T791I	aCa	aTa	3	3	B.1.177.81	0.000568
S	791	T791I	aCa	aTa	3	3	B.1.177.82	0.001432
S	791	T791K	aCa	aAa	3	3	B.1.243	0.000209
S	791	T791T	acA	acG	3	3	B.1.258	0.0002
S	791	T791I	aCa	aTa	3	3	B.1.258	0.0002
S	791	T791I	aCa	aTa	3	3	B.1.265	0.003812
S	791	T791T	acA	acT	2	3	B.1.36	0.000292
S	791	T791T	acA	acG	1	3	B.1.36	0.000146
S	791	T791T	acA	acT	3	3	B.1.411	0.011111
S	791	T791A	Aca	Gca	3	3	B.1.438.1	0.000322
S	791	T791P	Aca	Cca	3	3	B.1.526	0.000071
S	791	T791I	aCa	aTa	3	3	B.1.623	0.001609
S	791	T791T	acA	acT	3	3	B.1.637	0.000219
S	791	T791I	aCa	aTa	3	3	B.39	0.006993
S	791	T791I	aCa	aTa	3	3	P.1.15	0.000697
S	791	T791R	aCa	aGa	2	2		0.111111
S	791	T791I	aCa	aTa	2	2		0.111111
S	791	T791del1	acA	ac-	2	2	All	0
S	791	T791K	aCa	aAa	2	2	AY.103	0.000012
S	791	T791I	aCa	aTa	2	2	AY.111	0.000366
S	791	T791K	aCa	aAa	2	2	AY.120	0.000074
S	791	T791T	acA	acT	2	2	AY.13	0.000322
S	791	T791I	aCa	aTa	2	2	AY.20	0.000078
S	791	T791K	aCa	aAa	2	2	AY.20	0.000078
S	791	T791I	aCa	aTa	2	2	AY.24	0.000862
S	791	T791T	acA	acG	2	2	AY.29	0.000032
S	791	T791A	Aca	Gca	2	2	AY.43	0.000009
S	791	T791S	Aca	Tca	2	2	AY.44	0.000012
S	791	T791A	Aca	Gca	2	2	AY.47	0.000062
S	791	T791I	aCa	aTa	2	2	AY.54	0.000191
S	791	T791K	aCa	aAa	2	2	AY.58	0.001815
S	791	T791I	aCa	aTa	2	2	AY.59	0.001059
S	791	T791I	aCa	aTa	2	2	AY.6	0.000082
S	791	T791I	aCa	aTa	2	2	AY.60	0.001876
S	791	T791I	aCa	aTa	2	2	AY.62	0.000871
S	791	T791I	aCa	aTa	2	2	AY.69	0.000373
S	791	T791del	ACA	---	2	2	AY.75	0.000112
S	791	T791T	acA	acT	2	2	AY.75	0.000112
S	791	T791I	aCa	aTa	2	2	AY.91	0.001461
S	791	T791T	acA	acC	2	2	B.1	0.000018
S	791	T791del	ACA	---	2	2	B.1.1	0.000036
S	791	T791I	aCa	aTa	2	2	B.1.1.222	0.000408
S	791	T791P	Aca	Cca	2	2	B.1.1.222	0.000408
S	791	T791del	ACA	---	2	2	B.1.1.291	0.001485
S	791	T791T	acA	acT	2	2	B.1.1.318	0.000604
S	791	T791K	aCa	aAa	2	2	B.1.1.348	0.001592
S	791	T791K	aCa	aAa	2	2	B.1.1.37	0.000386
S	791	T791I	aCa	aTa	2	2	B.1.1.434	0.000697
S	791	T791K	aCa	aAa	2	2	B.1.1.523	0.003125
S	791	T791I	aCa	aTa	2	2	B.1.1.63	0.000772
S	791	T791K	aCa	aAa	2	2	B.1.166	0.016949
S	791	T791A	Aca	Gca	2	2	B.1.177	0.000026
S	791	T791A	Aca	Gca	2	2	B.1.177.60	0.000437
S	791	T791I	aCa	aTa	2	2	B.1.208	0.08
S	791	T791I	aCa	aTa	2	2	B.1.234	0.000264
S	791	T791K	aCa	aAa	2	2	B.1.351	0.000059
S	791	T791T	acA	acG	1	2	B.1.351.2	0.000303
S	791	T791T	acA	acT	1	2	B.1.351.2	0.000303
S	791	T791T	acA	acT	2	2	B.1.351.3	0.001753
S	791	T791K	aCa	aAa	2	2	B.1.399	0.003868
S	791	T791K	aCa	aAa	2	2	B.1.453	0.006472
S	791	T791I	aCa	aTa	2	2	B.1.466.2	0.000782
S	791	T791I	aCa	aTa	2	2	B.1.565	0.001621
S	791	T791I	aCa	aTa	2	2	B.1.617.1	0.000258
S	791	T791del	ACA	---	2	2	B.1.617.2	0.000008
S	791	T791A	Aca	Gca	2	2	B.1.617.2	0.000008
S	791	T791I	aCa	aTa	2	2	D.2	0.00015
S	791	T791P	Aca	Cca	2	2	P.1	0.000032
S	791	T791K	aCa	aAa	2	2	P.1.16	0.000748
S	791	T791del	ACA	---	2	2	P.1.7	0.000639
S	791	T791del	ACA	---	1	1	A	0.000387
S	791	T791K	aCa	aAa	1	1	A.2	0.000662
S	791	T791I	aCa	aTa	1	1	A.2.5	0.000499
S	791	T791I	aCa	aTa	1	1	AE.8	0.000489
S	791	T791del	ACA	---	1	1	AY.10	0.00053
S	791	T791P	Aca	Cca	1	1	AY.100	0.000046
S	791	T791del	ACA	---	1	1	AY.100	0.000046
S	791	T791S	Aca	Tca	1	1	AY.102	0.000027
S	791	T791I	aCa	aTa	1	1	AY.102	0.000027
S	791	T791del	ACA	---	1	1	AY.103	0.000006
S	791	T791K	aCa	aAa	1	1	AY.110	0.000113
S	791	T791T	acA	acT	1	1	AY.113	0.000142
S	791	T791I	aCa	aTa	1	1	AY.114	0.000231
S	791	T791T	acA	acC	1	1	AY.114	0.000231
S	791	T791P	Aca	Cca	1	1	AY.117	0.000085
S	791	T791K	aCa	aAa	1	1	AY.119	0.000035
S	791	T791del	ACA	---	1	1	AY.120	0.000037
S	791	T791T	acA	acT	1	1	AY.120	0.000037
S	791	T791I	aCa	aTa	1	1	AY.120.1	0.000321
S	791	T791P	Aca	Cca	1	1	AY.121	0.000135
S	791	T791I	aCa	aTa	1	1	AY.13	0.000161
S	791	T791A	Aca	Gca	1	1	AY.14	0.000088
S	791	T791K	aCa	aAa	1	1	AY.17	0.008197
S	791	T791I	aCa	aTa	1	1	AY.2	0.000356
S	791	T791P	Aca	Cca	1	1	AY.23	0.00007
S	791	T791T	acA	acG	1	1	AY.23	0.00007
S	791	T791del	ACA	---	1	1	AY.24	0.000431
S	791	T791T	acA	acT	1	1	AY.25	0.000006
S	791	T791K	aCa	aAa	1	1	AY.25	0.000006
S	791	T791K	aCa	aAa	1	1	AY.26	0.000028
S	791	T791del	ACA	---	1	1	AY.29	0.000016
S	791	T791K	aCa	aAa	1	1	AY.29	0.000016
S	791	T791del	ACA	---	1	1	AY.3	0.00001
S	791	T791T	acA	acG	1	1	AY.3	0.00001
S	791	T791I	aCa	aTa	1	1	AY.3.1	0.000085
S	791	T791P	Aca	Cca	1	1	AY.30	0.000396
S	791	T791T	acA	acT	1	1	AY.30	0.000396
S	791	T791T	acA	acG	1	1	AY.32	0.000532
S	791	T791P	Aca	Cca	1	1	AY.34	0.000097
S	791	T791T	acA	acT	1	1	AY.34.1	0.00051
S	791	T791I	aCa	aTa	1	1	AY.34.1	0.00051
S	791	T791A	Aca	Gca	1	1	AY.39	0.000025
S	791	T791P	Aca	Cca	1	1	AY.4	0.000002
S	791	T791I	aCa	aTa	1	1	AY.4.2.1	0.000149
S	791	T791P	Aca	Cca	1	1	AY.40	0.000964
S	791	T791P	Aca	Cca	1	1	AY.42	0.00004
S	791	T791K	aCa	aAa	1	1	AY.42	0.00004
S	791	T791del1	acA	ac-	1	1	AY.43	0.000004
S	791	T791A	Aca	Gca	1	1	AY.44	0.000006
S	791	T791P	Aca	Cca	1	1	AY.44	0.000006
S	791	T791del	ACA	---	1	1	AY.44	0.000006
S	791	T791T	acA	acT	1	1	AY.46	0.000104
S	791	T791I	aCa	aTa	1	1	AY.46.2	0.000635
S	791	T791A	Aca	Gca	1	1	AY.46.4	0.000165
S	791	T791T	acA	acG	1	1	AY.5	0.000021
S	791	T791I	aCa	aTa	1	1	AY.55	0.000917
S	791	T791T	acA	acG	1	1	AY.6	0.000041
S	791	T791I	aCa	aTa	1	1	AY.67	0.000464
S	791	T791I	aCa	aTa	1	1	AY.68	0.000274
S	791	T791del	ACA	---	1	1	AY.68	0.000274
S	791	T791K	aCa	aAa	1	1	AY.68	0.000274
S	791	T791T	acA	acG	1	1	AY.7.1	0.000113
S	791	T791I	aCa	aTa	1	1	AY.7.2	0.000559
S	791	T791K	aCa	aAa	1	1	AY.74	0.000116
S	791	T791K	aCa	aAa	1	1	AY.75.1	0.00018
S	791	T791I	aCa	aTa	1	1	AY.75.1	0.00018
S	791	T791del	ACA	---	1	1	AY.77	0.001127
S	791	T791K	aCa	aAa	1	1	AY.86	0.00083
S	791	T791K	aCa	aAa	1	1	AY.87	0.000833
S	791	T791I	aCa	aTa	1	1	AY.9.2.1	0.001976
S	791	T791R	aCa	aGa	1	1	AY.98	0.000079
S	791	T791T	acA	acC	1	1	AY.98.1	0.000048
S	791	T791I	aCa	aTa	1	1	AY.98.1	0.000048
S	791	T791I	aCa	aTa	1	1	AY.99	0.001049
S	791	T791I	aCa	aTa	1	1	AY.99.2	0.000092
S	791	T791I	aCa	aTa	1	1	AZ.2	0.000821
S	791	T791K	aCa	aAa	1	1	B	0.000128
S	791	T791del	ACA	---	1	1	B.1.1.139	0.022727
S	791	T791T	acA	acC	1	1	B.1.1.204	0.00304
S	791	T791K	aCa	aAa	1	1	B.1.1.210	0.005714
S	791	T791K	aCa	aAa	1	1	B.1.1.216	0.00089
S	791	T791del	ACA	---	1	1	B.1.1.236	0.006897
S	791	T791K	aCa	aAa	1	1	B.1.1.237	0.005405
S	791	T791I	aCa	aTa	1	1	B.1.1.25	0.000569
S	791	T791I	aCa	aTa	1	1	B.1.1.255	0.00303
S	791	T791T	acA	acT	1	1	B.1.1.265	0.003155
S	791	T791P	Aca	Cca	1	1	B.1.1.28	0.000311
S	791	T791A	Aca	Gca	1	1	B.1.1.283	0.023256
S	791	T791I	aCa	aTa	1	1	B.1.1.291	0.000742
S	791	T791del	ACA	---	1	1	B.1.1.315	0.008475
S	791	T791K	aCa	aAa	1	1	B.1.1.318	0.000302
S	791	T791I	aCa	aTa	1	1	B.1.1.333	0.001076
S	791	T791T	acA	acT	1	1	B.1.1.334	0.016393
S	791	T791I	aCa	aTa	1	1	B.1.1.354	0.004386
S	791	T791A	Aca	Gca	1	1	B.1.1.37	0.000193
S	791	T791K	aCa	aAa	1	1	B.1.1.372	0.000689
S	791	T791del	ACA	---	1	1	B.1.1.372	0.000689
S	791	T791T	acA	acG	1	1	B.1.1.389	0.006061
S	791	T791T	acA	acG	1	1	B.1.1.39	0.00051
S	791	T791del	ACA	---	1	1	B.1.1.409	0.002833
S	791	T791T	acA	acG	1	1	B.1.1.434	0.000349
S	791	T791I	aCa	aTa	1	1	B.1.1.461	0.012048
S	791	T791del	ACA	---	1	1	B.1.1.519	0.00004
S	791	T791A	Aca	Gca	1	1	B.1.1.58	0.005376
S	791	T791S	Aca	Tca	1	1	B.1.1.7	0.000001
S	791	T791I	aCa	aTa	1	1	B.1.111	0.001175
S	791	T791I	aCa	aTa	1	1	B.1.126	0.001276
S	791	T791K	aCa	aAa	1	1	B.1.128	0.000635
S	791	T791del	ACA	---	1	1	B.1.140	0.018868
S	791	T791T	acA	acC	1	1	B.1.177	0.000013
S	791	T791R	aCa	aGa	1	1	B.1.177	0.000013
S	791	T791I	aCa	aTa	1	1	B.1.177.24	0.001295
S	791	T791del	ACA	---	1	1	B.1.177.4	0.000211
S	791	T791I	aCa	aTa	1	1	B.1.177.45	0.000381
S	791	T791P	Aca	Cca	1	1	B.1.177.52	0.001757
S	791	T791I	aCa	aTa	1	1	B.1.177.57	0.000281
S	791	T791P	Aca	Cca	1	1	B.1.177.57	0.000281
S	791	T791I	aCa	aTa	1	1	B.1.177.65	0.000665
S	791	T791S	Aca	Tca	1	1	B.1.177.73	0.000566
S	791	T791del	ACA	---	1	1	B.1.2	0.000009
S	791	T791del1	acA	ac-	1	1	B.1.2	0.000009
S	791	T791R	aCa	aGa	1	1	B.1.2	0.000009
S	791	T791N	aCA	aAC	1	1	B.1.2	0.000009
S	791	T791T	acA	acT	1	1	B.1.221	0.000071
S	791	T791K	aCa	aAa	1	1	B.1.221	0.000071
S	791	T791I	aCa	aTa	1	1	B.1.221	0.000071
S	791	T791I	aCa	aTa	1	1	B.1.239	0.001221
S	791	T791del	ACA	---	1	1	B.1.258	0.000067
S	791	T791P	Aca	Cca	1	1	B.1.258	0.000067
S	791	T791K	aCa	aAa	1	1	B.1.258	0.000067
S	791	T791I	aCa	aTa	1	1	B.1.258.17	0.000104
S	791	T791del	ACA	---	1	1	B.1.258.17	0.000104
S	791	T791K	aCa	aAa	1	1	B.1.267	0.018519
S	791	T791I	aCa	aTa	1	1	B.1.280	0.007143
S	791	T791K	aCa	aAa	1	1	B.1.305	0.002151
S	791	T791T	acA	acG	1	1	B.1.320	0.001245
S	791	T791I	aCa	aTa	1	1	B.1.351.2	0.000303
S	791	T791I	aCa	aTa	1	1	B.1.36	0.000146
S	791	T791del	ACA	---	1	1	B.1.36.18	0.00042
S	791	T791T	acA	acT	1	1	B.1.36.29	0.000517
S	791	T791I	aCa	aTa	1	1	B.1.362	0.001541
S	791	T791I	aCa	aTa	1	1	B.1.367	0.000792
S	791	T791I	aCa	aTa	1	1	B.1.375	0.00082
S	791	T791I	aCa	aTa	1	1	B.1.400	0.000429
S	791	T791I	aCa	aTa	1	1	B.1.409	0.000781
S	791	T791K	aCa	aAa	1	1	B.1.429	0.000024
S	791	T791K	aCa	aAa	1	1	B.1.508	0.025641
S	791	T791K	aCa	aAa	1	1	B.1.509	0.000866
S	791	T791T	acA	acG	1	1	B.1.509	0.000866
S	791	T791del	ACA	---	1	1	B.1.526	0.000024
S	791	T791P	Aca	Cca	1	1	B.1.533	0.009615
S	791	T791I	aCa	aTa	1	1	B.1.560	0.00463
S	791	T791del	ACA	---	1	1	B.1.561	0.000397
S	791	T791K	aCa	aAa	1	1	B.1.564	0.000426
S	791	T791I	aCa	aTa	1	1	B.1.576	0.000907
S	791	T791del	ACA	---	1	1	B.1.595	0.000261
S	791	T791T	acA	acG	1	1	B.1.595	0.000261
S	791	T791R	aCa	aGa	1	1	B.1.596	0.000087
S	791	T791I	aCa	aTa	1	1	B.1.596.1	0.009346
S	791	T791K	aCa	aAa	1	1	B.1.599	0.00365
S	791	T791K	aCa	aAa	1	1	B.1.617.1	0.000129
S	791	T791T	acA	acT	1	1	B.1.617.1	0.000129
S	791	T791R	aCa	aGa	1	1	B.1.617.2	0.000004
S	791	T791del	ACA	---	1	1	B.1.620	0.000946
S	791	T791T	acA	acG	1	1	B.1.621.1	0.000506
S	791	T791I	aCa	aTa	1	1	B.1.627	0.00202
S	791	T791del	ACA	---	1	1	B.1.638	0.052632
S	791	T791K	aCa	aAa	1	1	B.1.9	0.006173
S	791	T791I	aCa	aTa	1	1	B.10	0.008264
S	791	T791del	ACA	---	1	1	B.34	0.013699
S	791	T791I	aCa	aTa	1	1	B.6	0.00091
S	791	T791I	aCa	aTa	1	1	C.36	0.000911
S	791	T791del	ACA	---	1	1	C.37	0.000116
S	791	T791A	Aca	Gca	1	1	C.37	0.000116
S	791	T791I	aCa	aTa	1	1	C.8	0.004464
S	791	T791S	AcA	TcT	1	1	P.1	0.000016
S	791	T791I	aCa	aTa	1	1	P.1.10	0.000269
S	791	T791T	acA	acT	1	1	P.1.10	0.000269
S	791	T791T	acA	acT	1	1	P.1.12	0.000484
S	791	T791del	ACA	---	1	1	P.1.13	0.000898
S	791	T791I	aCa	aTa	1	1	P.1.17	0.000162
S	791	T791I	aCa	aTa	1	1	P.3	0.001595
S	791	T791K	aCa	aAa	1	1	Q.1	0.000126
S	791	T791del	ACA	---	1	1	Q.2	0.000613
S	791	T791I	aCa	aTa	1	1	Q.2	0.000613
S	791	T791del	ACA	---	1	1	Q.8	0.000165
S	791	T791I	aCa	aTa	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.