CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 789

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S789Y789YsyntaCtaT1002210022123927-23929
S789Y789deldelTAC---8080123927-23929
S789Y789HnonsynTacCac3232123927-23929
S789Y789XnonsyntaCtaA1717123927-23929
S789Y789NnonsynTacAac1313123927-23929
S789Y789CnonsyntActGc1212123927-23929
S789Y789DnonsynTacGac1190.81818223927-23929
S789Y789DnonsynTaCGaT1120.18181823927-23929
S789Y789FnonsyntActTc1070.723927-23929
S789Y789FnonsyntACtTT1030.323927-23929
S789Y789del1delTac-ac860.7523927-23929
S789Y789del1deltaCta-820.2523927-23929
S789Y789del2deltACt--33123927-23929
S789Y789VnonsynTACGTT22123927-23929
S789Y789LnonsyntACtTA22123927-23929
S789Y789SnonsyntACtCT210.523927-23929
S789Y789SnonsyntACtCA210.523927-23929
S789Y789QnonsynTaCCaA11123927-23929
S789Y789EnonsynTaCGaA11123927-23929

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S789Y789YtaCtaT1002210022All0.001917
S789Y789YtaCtaT11921192B.1.3510.035434
S789Y789YtaCtaT11451145B.1.1.70.001025
S789Y789YtaCtaT10921092B.6.60.970667
S789Y789YtaCtaT10111011B.60.919927
S789Y789YtaCtaT731731AY.40.001138
S789Y789YtaCtaT539539AY.430.002388
S789Y789YtaCtaT438438B.1.6370.032006
S789Y789YtaCtaT261261B.1.617.20.000983
S789Y789YtaCtaT223223AY.1030.001385
S789Y789YtaCtaT201201AY.4.20.004359
S789Y789YtaCtaT175175B.1.20.001541
S789Y789YtaCtaT143143AY.750.008011
S789Y789YtaCtaT135135B.1.1770.001778
S789Y789YtaCtaT130130AY.290.002051
S789Y789YtaCtaT126126AY.250.000758
S789Y789YtaCtaT125125AY.440.000761
S789Y789YtaCtaT121121B.6.81
S789Y789YtaCtaT118118B.1.10.002141
S789Y789YtaCtaT9393AY.30.000925
S789Y789YtaCtaT8282B.10.000751
S789Y789delTAC---8080All0.000015
S789Y789YtaCtaT7979AY.200.00307
S789Y789YtaCtaT5858P.10.000914
S789Y789YtaCtaT5555B.1.177.200.08346
S789Y789YtaCtaT4949B.1.4290.001153
S789Y789YtaCtaT4545AY.50.000929
S789Y789YtaCtaT4444B.1.1.5190.001747
S789Y789YtaCtaT4343B.1.1.2140.002385
S789Y789YtaCtaT4343B.1.160.160.039963
S789Y789YtaCtaT4242B.1.160.180.306569
S789Y789YtaCtaT4141B.1.1600.001279
S789Y789YtaCtaT3838B.6.11
S789Y789YtaCtaT3838B.6.31
S789Y789YtaCtaT3636AY.1020.000955
S789Y789YtaCtaT3333C.36.30.018718
S789Y789HTacCac3232All0.000006
S789Y789YtaCtaT3232B.1.617.10.004127
S789Y789YtaCtaT2929AY.9.20.001065
S789Y789YtaCtaT2626B.1.2580.00173
S789Y789YtaCtaT2525AY.1060.008372
S789Y789YtaCtaT2525AY.340.002424
S789Y789YtaCtaT2525B.1.177.580.033289
S789Y789YtaCtaT2525C.1.20.106383
S789Y789YtaCtaT2424AY.130.003863
S789Y789YtaCtaT2424AY.390.000593
S789Y789YtaCtaT2323B.1.2430.0016
S789Y789YtaCtaT2222B.6.41
S789Y789YtaCtaT2121B.1.1.1350.098592
S789Y789YtaCtaT2121C.370.002437
S789Y789YtaCtaT2020B.1.360.002918
S789Y789YtaCtaT1818B.1.2340.002375
S789Y789XtaCtaA1717All0.000003
S789Y789YtaCtaT1717B.1.1.4000.85
S789Y789YtaCtaT1717B.1.4270.000858
S789Y789YtaCtaT1616AY.1200.000595
S789Y789YtaCtaT1616AY.60.000658
S789Y789YtaCtaT1616B.1.5260.000376
S789Y789YtaCtaT1616B.6.21
S789Y789YtaCtaT1616C.160.016967
S789Y789YtaCtaT1515AY.260.000425
S789Y789YtaCtaT1515AY.330.001002
S789Y789YtaCtaT1515AY.730.00998
S789Y789YtaCtaT1414AY.1100.001578
S789Y789YtaCtaT1414AY.230.000976
S789Y789YtaCtaT1414B.1.1.2220.002856
S789Y789YtaCtaT1414B.1.5250.001584
S789Y789NTacAac1313All0.000002
S789Y789YtaCtaT1313AY.1190.000459
S789Y789YtaCtaT1313AY.90.000879
S789Y789CtActGc1212All0.000002
S789Y789YtaCtaT1212AY.470.000373
S789Y789YtaCtaT1212B.1.1110.014101
S789Y789YtaCtaT1212B.1.1460.050847
S789Y789YtaCtaT1212B.1.5750.003641
S789Y789YtaCtaT1212B.6.50.923077
S789Y789DTacGac911All0.000002
S789Y789DTaCGaT211All0
S789Y789YtaCtaT1111AY.270.000712
S789Y789HTacCac1111AY.40.000017
S789Y789YtaCtaT1111B.1.1.2840.001181
S789Y789YtaCtaT1111B.1.6210.000974
S789Y789YtaCtaT1111C.130.282051
S789Y789FtActTc710All0.000001
S789Y789FtACtTT310All0.000001
S789Y789YtaCtaT1010AY.1180.000626
S789Y789YtaCtaT1010B0.001278
S789Y789YtaCtaT1010B.1.1570.029851
S789Y789delTAC---1010B.1.6210.000885
S789Y789YtaCtaT99AY.1000.000414
S789Y789YtaCtaT99AY.3.10.000767
S789Y789YtaCtaT99AY.46.60.00065
S789Y789YtaCtaT99AY.590.004767
S789Y789YtaCtaT99AY.990.009444
S789Y789YtaCtaT99B.1.177.320.012146
S789Y789del1Tac-ac68All0.000001
S789Y789del1taCta-28All0
S789Y789YtaCtaT88AY.46.20.005083
S789Y789YtaCtaT88AY.610.000838
S789Y789YtaCtaT88AY.75.10.001442
S789Y789YtaCtaT88B.1.1.3060.003507
S789Y789delTAC---88B.1.1.70.000007
S789Y789YtaCtaT88B.1.177.600.001747
S789Y789YtaCtaT88B.1.214.20.004796
S789Y789YtaCtaT77AY.120.10.002247
S789Y789YtaCtaT77AY.450.000852
S789Y789YtaCtaT77AY.650.003731
S789Y789YtaCtaT77B.1.1.280.002179
S789Y789YtaCtaT77B.1.160.300.020833
S789Y789YtaCtaT77B.1.177.150.004416
S789Y789YtaCtaT77B.1.177.810.001325
S789Y789YtaCtaT77B.1.5610.002779
S789Y789YtaCtaT77P.1.140.000335
S789Y789YtaCtaT66AD.20.001314
S789Y789YtaCtaT66AY.420.000241
S789Y789YtaCtaT66AY.46.50.00119
S789Y789YtaCtaT66B.1.1.700.002046
S789Y789YtaCtaT66B.1.5360.142857
S789Y789YtaCtaT66B.1.5650.004862
S789Y789YtaCtaT66D.20.00045
S789Y789delTAC---66P.1.150.001394
S789Y789YtaCtaT55AY.10.001979
S789Y789YtaCtaT55AY.1160.001434
S789Y789YtaCtaT55AY.460.00052
S789Y789YtaCtaT55AY.930.001365
S789Y789delTAC---55B.10.000046
S789Y789YtaCtaT55B.1.1.330.002104
S789Y789YtaCtaT55B.1.1.4160.004525
S789Y789YtaCtaT55B.1.1.4250.227273
S789Y789YtaCtaT55B.1.177.120.000758
S789Y789YtaCtaT55B.1.2210.000355
S789Y789YtaCtaT55B.1.258.170.00052
S789Y789YtaCtaT55B.1.3490.003574
S789Y789YtaCtaT55B.1.4680.028571
S789Y789delTAC---55P.10.000079
S789Y789YtaCtaT55P.20.000933
S789Y789YtaCtaT44A0.001548
S789Y789YtaCtaT44AY.1170.000338
S789Y789YtaCtaT44AY.380.001997
S789Y789delTAC---44AY.430.000018
S789Y789YtaCtaT44AY.550.00367
S789Y789YtaCtaT44AY.600.003752
S789Y789NTacAac44B.1.1.250.002274
S789Y789YtaCtaT44B.1.1590.04878
S789Y789YtaCtaT44B.1.258.40.013793
S789Y789YtaCtaT44B.1.4280.004082
S789Y789YtaCtaT44B.1.621.10.002023
S789Y789YtaCtaT44B.30.003322
S789Y789YtaCtaT44P.1.120.001936
S789Y789YtaCtaT44P.1.160.001496
S789Y789del2tACt--33All0.000001
S789Y789YtaCtaT33AY.1080.003308
S789Y789YtaCtaT33AY.120.000948
S789Y789delTAC---33AY.250.000018
S789Y789YtaCtaT33AY.29.10.000662
S789Y789YtaCtaT33AY.320.001597
S789Y789YtaCtaT33AY.350.000699
S789Y789YtaCtaT33AY.360.000445
S789Y789YtaCtaT33AY.700.000626
S789Y789YtaCtaT33AY.790.003632
S789Y789YtaCtaT33AY.98.10.000145
S789Y789CtActGc33AY.98.10.000145
S789Y789HTacCac33B.10.000027
S789Y789YtaCtaT33B.1.1.2800.009259
S789Y789YtaCtaT33B.1.1.3480.002389
S789Y789YtaCtaT33B.1.1.3510.00838
S789Y789YtaCtaT33B.1.1.500.002037
S789Y789del1Tac-ac23B.1.1.70.000002
S789Y789del1taCta-13B.1.1.70.000001
S789Y789YtaCtaT33B.1.177.440.001557
S789Y789YtaCtaT33B.1.177.70.000495
S789Y789YtaCtaT33B.1.258.140.002941
S789Y789YtaCtaT33B.1.3050.006452
S789Y789YtaCtaT33B.1.351.50.001799
S789Y789YtaCtaT33B.1.3690.000856
S789Y789YtaCtaT33B.1.416.10.004687
S789Y789YtaCtaT33B.1.5170.001281
S789Y789YtaCtaT33B.1.5960.000261
S789Y789YtaCtaT33C.36.3.10.008152
S789Y789YtaCtaT33P.1.100.000808
S789Y789YtaCtaT33P.1.170.000485
S789Y789YtaCtaT33R.10.00027
S789Y789FtACtTT220.111111
S789Y789VTACGTT220.111111
S789Y789YtaCtaT220.111111
S789Y789XtaCtaA220.111111
S789Y789DTaCGaT220.111111
S789Y789VTACGTT22All0
S789Y789LtACtTA22All0
S789Y789StACtCA12All0
S789Y789StACtCT12All0
S789Y789HTacCac22AY.1030.000012
S789Y789YtaCtaT22AY.1090.001479
S789Y789YtaCtaT22AY.1140.000462
S789Y789YtaCtaT22AY.1210.000271
S789Y789YtaCtaT22AY.160.000759
S789Y789YtaCtaT22AY.16.10.00094
S789Y789YtaCtaT22AY.240.000862
S789Y789delTAC---22AY.34.10.00102
S789Y789YtaCtaT22AY.370.000632
S789Y789YtaCtaT22AY.4.2.10.000298
S789Y789XtaCtaA22AY.4.50.000215
S789Y789YtaCtaT22AY.400.001929
S789Y789YtaCtaT22AY.5.30.000675
S789Y789YtaCtaT22AY.690.000373
S789Y789YtaCtaT22AY.710.00095
S789Y789YtaCtaT22AY.740.000231
S789Y789YtaCtaT22AY.820.002714
S789Y789YtaCtaT22AY.910.001461
S789Y789YtaCtaT22AY.99.20.000184
S789Y789XtaCtaA22B.10.000018
S789Y789delTAC---22B.1.10.000036
S789Y789YtaCtaT22B.1.1.1270.125
S789Y789YtaCtaT22B.1.1.1700.002494
S789Y789YtaCtaT22B.1.1.1890.003026
S789Y789YtaCtaT22B.1.1.2980.001724
S789Y789YtaCtaT22B.1.1.3050.007722
S789Y789YtaCtaT22B.1.1.3170.000823
S789Y789YtaCtaT22B.1.1.3180.000604
S789Y789YtaCtaT22B.1.1.3470.036364
S789Y789YtaCtaT22B.1.1.3890.012121
S789Y789CtActGc22B.1.1.70.000002
S789Y789YtaCtaT22B.1.177.170.001642
S789Y789YtaCtaT22B.1.2100.004264
S789Y789YtaCtaT22B.1.220.002635
S789Y789YtaCtaT22B.1.2600.006689
S789Y789YtaCtaT22B.1.2670.037037
S789Y789YtaCtaT22B.1.3060.011429
S789Y789YtaCtaT22B.1.36.80.002
S789Y789YtaCtaT22B.1.3610.002577
S789Y789YtaCtaT22B.1.3890.002004
S789Y789YtaCtaT22B.1.438.10.000215
S789Y789YtaCtaT22B.1.5640.000852
S789Y789YtaCtaT22B.1.5770.001375
S789Y789YtaCtaT22B.1.5820.000981
S789Y789YtaCtaT22B.1.6090.000959
S789Y789delTAC---22P.1.70.000639
S789Y789YtaCtaT22P.1.70.000639
S789Y789YtaCtaT22Q.10.000253
S789Y789QTaCCaA110.055556
S789Y789HTacCac110.055556
S789Y789delTAC---11A0.000387
S789Y789YtaCtaT11A.2.50.000499
S789Y789YtaCtaT11AH.30.003802
S789Y789QTaCCaA11All0
S789Y789ETaCGaA11All0
S789Y789YtaCtaT11AU.10.001266
S789Y789delTAC---11AY.100.00053
S789Y789delTAC---11AY.1000.000046
S789Y789HTacCac11AY.1010.00049
S789Y789YtaCtaT11AY.1010.00049
S789Y789HTacCac11AY.1020.000027
S789Y789delTAC---11AY.1030.000006
S789Y789YtaCtaT11AY.1050.000643
S789Y789YtaCtaT11AY.1130.000142
S789Y789DTacGac11AY.1170.000085
S789Y789delTAC---11AY.1200.000037
S789Y789YtaCtaT11AY.140.000088
S789Y789YtaCtaT11AY.190.00114
S789Y789delTAC---11AY.240.000431
S789Y789LtACtTA11AY.250.000006
S789Y789XtaCtaA11AY.250.000006
S789Y789DTacGac11AY.250.000006
S789Y789FtActTc11AY.250.000006
S789Y789HTacCac11AY.250.000006
S789Y789del1Tac-ac11AY.250.000006
S789Y789delTAC---11AY.290.000016
S789Y789delTAC---11AY.30.00001
S789Y789HTacCac11AY.390.000025
S789Y789HTacCac11AY.39.10.00004
S789Y789YtaCtaT11AY.39.10.00004
S789Y789del1Tac-ac11AY.40.000002
S789Y789XtaCtaA11AY.40.000002
S789Y789FtActTc11AY.420.00004
S789Y789XtaCtaA11AY.430.000004
S789Y789HTacCac11AY.430.000004
S789Y789FtActTc11AY.430.000004
S789Y789CtActGc11AY.430.000004
S789Y789DTacGac11AY.430.000004
S789Y789CtActGc11AY.440.000006
S789Y789StACtCA11AY.440.000006
S789Y789ETaCGaA11AY.440.000006
S789Y789HTacCac11AY.440.000006
S789Y789YtaCtaT11AY.480.000465
S789Y789YtaCtaT11AY.5.40.000277
S789Y789YtaCtaT11AY.540.000095
S789Y789DTacGac11AY.550.000917
S789Y789YtaCtaT11AY.570.000656
S789Y789HTacCac11AY.60.000041
S789Y789del1taCta-11AY.610.000105
S789Y789YtaCtaT11AY.670.000464
S789Y789delTAC---11AY.680.000274
S789Y789NTacAac11AY.690.000187
S789Y789YtaCtaT11AY.70.000196
S789Y789XtaCtaA11AY.710.000475
S789Y789delTAC---11AY.750.000056
S789Y789delTAC---11AY.770.001127
S789Y789YtaCtaT11AY.770.001127
S789Y789YtaCtaT11AY.80.000606
S789Y789YtaCtaT11AY.840.000437
S789Y789YtaCtaT11AY.850.000427
S789Y789YtaCtaT11AY.9.10.000084
S789Y789YtaCtaT11AY.970.001701
S789Y789YtaCtaT11AY.980.000079
S789Y789NTacAac11B.10.000009
S789Y789FtActTc11B.1.10.000018
S789Y789XtaCtaA11B.1.10.000018
S789Y789StACtCT11B.1.10.000018
S789Y789DTacGac11B.1.10.000018
S789Y789NTacAac11B.1.10.000018
S789Y789YtaCtaT11B.1.1.10.000327
S789Y789CtActGc11B.1.1.10.000327
S789Y789YtaCtaT11B.1.1.100.001115
S789Y789YtaCtaT11B.1.1.1210.002427
S789Y789YtaCtaT11B.1.1.1290.009174
S789Y789delTAC---11B.1.1.1390.022727
S789Y789YtaCtaT11B.1.1.1610.003534
S789Y789YtaCtaT11B.1.1.2030.016949
S789Y789YtaCtaT11B.1.1.2050.003717
S789Y789YtaCtaT11B.1.1.2270.004348
S789Y789delTAC---11B.1.1.2360.006897
S789Y789NTacAac11B.1.1.280.000311
S789Y789XtaCtaA11B.1.1.2910.000742
S789Y789delTAC---11B.1.1.2910.000742
S789Y789YtaCtaT11B.1.1.3020.002075
S789Y789NTacAac11B.1.1.3060.000438
S789Y789delTAC---11B.1.1.3150.008475
S789Y789YtaCtaT11B.1.1.3160.000925
S789Y789YtaCtaT11B.1.1.3350.012987
S789Y789YtaCtaT11B.1.1.370.000193
S789Y789delTAC---11B.1.1.3720.000689
S789Y789YtaCtaT11B.1.1.3880.045455
S789Y789YtaCtaT11B.1.1.390.00051
S789Y789HTacCac11B.1.1.3920.052632
S789Y789YtaCtaT11B.1.1.3980.003226
S789Y789delTAC---11B.1.1.4090.002833
S789Y789YtaCtaT11B.1.1.4480.002033
S789Y789YtaCtaT11B.1.1.470.005348
S789Y789YtaCtaT11B.1.1.5000.02
S789Y789del2tACt--11B.1.1.5190.00004
S789Y789YtaCtaT11B.1.1.5210.005348
S789Y789HTacCac11B.1.1.70.000001
S789Y789XtaCtaA11B.1.1.70.000001
S789Y789YtaCtaT11B.1.1030.019231
S789Y789YtaCtaT11B.1.1280.000635
S789Y789YtaCtaT11B.1.1390.000733
S789Y789delTAC---11B.1.1400.018868
S789Y789del1Tac-ac11B.1.1600.000031
S789Y789delTAC---11B.1.1600.000031
S789Y789HTacCac11B.1.1600.000031
S789Y789YtaCtaT11B.1.160.260.002421
S789Y789YtaCtaT11B.1.177.180.00116
S789Y789YtaCtaT11B.1.177.300.002513
S789Y789YtaCtaT11B.1.177.310.011494
S789Y789YtaCtaT11B.1.177.40.000211
S789Y789YtaCtaT11B.1.177.460.000918
S789Y789YtaCtaT11B.1.177.560.000668
S789Y789YtaCtaT11B.1.177.570.000281
S789Y789DTacGac11B.1.177.70.000165
S789Y789YtaCtaT11B.1.177.720.00339
S789Y789YtaCtaT11B.1.177.730.000566
S789Y789YtaCtaT11B.1.177.770.000726
S789Y789HTacCac11B.1.177.820.000477
S789Y789NTacAac11B.1.177.830.001481
S789Y789YtaCtaT11B.1.177.870.000728
S789Y789delTAC---11B.1.20.000009
S789Y789XtaCtaA11B.1.20.000009
S789Y789LtACtTA11B.1.20.000009
S789Y789FtActTc11B.1.20.000009
S789Y789NTacAac11B.1.20.000009
S789Y789YtaCtaT11B.1.2060.000816
S789Y789YtaCtaT11B.1.2190.009434
S789Y789YtaCtaT11B.1.2390.001221
S789Y789CtActGc11B.1.2430.00007
S789Y789del1Tac-ac11B.1.2580.000067
S789Y789delTAC---11B.1.2580.000067
S789Y789delTAC---11B.1.258.170.000104
S789Y789YtaCtaT11B.1.258.70.001912
S789Y789YtaCtaT11B.1.2650.001271
S789Y789YtaCtaT11B.1.3110.000275
S789Y789XtaCtaA11B.1.3360.002439
S789Y789HTacCac11B.1.3510.00003
S789Y789YtaCtaT11B.1.3560.001727
S789Y789delTAC---11B.1.36.180.00042
S789Y789YtaCtaT11B.1.36.310.001751
S789Y789YtaCtaT11B.1.3960.000706
S789Y789YtaCtaT11B.1.4020.009804
S789Y789YtaCtaT11B.1.4260.001009
S789Y789CtActGc11B.1.4290.000024
S789Y789HTacCac11B.1.4290.000024
S789Y789YtaCtaT11B.1.4560.003268
S789Y789YtaCtaT11B.1.466.20.000391
S789Y789HTacCac11B.1.466.20.000391
S789Y789YtaCtaT11B.1.5090.000866
S789Y789del2tACt--11B.1.5260.000024
S789Y789YtaCtaT11B.1.5270.003704
S789Y789delTAC---11B.1.5610.000397
S789Y789YtaCtaT11B.1.564.10.001577
S789Y789YtaCtaT11B.1.5760.000907
S789Y789delTAC---11B.1.5950.000261
S789Y789YtaCtaT11B.1.6130.027027
S789Y789delTAC---11B.1.617.20.000004
S789Y789CtActGc11B.1.617.20.000004
S789Y789FtActTc11B.1.617.20.000004
S789Y789NTacAac11B.1.617.20.000004
S789Y789DTacGac11B.1.617.20.000004
S789Y789del2tACt--11B.1.617.20.000004
S789Y789YtaCtaT11B.1.6200.000946
S789Y789delTAC---11B.1.6200.000946
S789Y789DTacGac11B.1.6210.000089
S789Y789delTAC---11B.1.6380.052632
S789Y789XtaCtaA11B.1.90.006173
S789Y789delTAC---11B.340.013699
S789Y789XtaCtaA11B.400.000364
S789Y789FtACtTT11B.60.00091
S789Y789delTAC---11C.370.000116
S789Y789YtaCtaT11L.30.003546
S789Y789FtActTc11P.10.000016
S789Y789NTacAac11P.10.000016
S789Y789CtActGc11P.1.10.000318
S789Y789DTacGac11P.1.10.000318
S789Y789delTAC---11P.1.130.000898
S789Y789YtaCtaT11P.1.150.000232
S789Y789YtaCtaT11P.30.001595
S789Y789delTAC---11Q.20.000613
S789Y789YtaCtaT11Q.30.000145
S789Y789YtaCtaT11Q.40.000455
S789Y789delTAC---11Q.80.000165