CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 786

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S786K786KsynaaAaaG290290123918-23920
S786K786RnonsynaAaaGa115115123918-23920
S786K786EnonsynAaaGaa107107123918-23920
S786K786deldelAAA---9595123918-23920
S786K786NnonsynaaAaaT65520.823918-23920
S786K786NnonsynaaAaaC65130.223918-23920
S786K786QnonsynAaaCaa4141123918-23920
S786K786TnonsynaAaaCa1818123918-23920
S786K786InonsynaAaaTa1010123918-23920
S786K786del1delAaa-aa760.85714323918-23920
S786K786del1delaaAaa-710.14285723918-23920
S786K786del2delAAa--a22123918-23920
S786K786LnonsynAAaCTa22123918-23920
S786K786SnonsynaAAaGT22123918-23920
S786K786CnonsynAAATGT11123918-23920
S786K786DnonsynAaAGaC11123918-23920
S786K786XnonsynAaaTaa11123918-23920

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S786K786KaaAaaG290290All0.000055
S786K786RaAaaGa115115All0.000022
S786K786KaaAaaG115115AY.30.001144
S786K786EAaaGaa107107All0.00002
S786K786delAAA---9595All0.000018
S786K786NaaAaaT5265All0.00001
S786K786NaaAaaC1365All0.000002
S786K786KaaAaaG5151B.1.1400.962264
S786K786RaAaaGa5151B.1.20.000449
S786K786EAaaGaa4949AY.330.003272
S786K786QAaaCaa4141All0.000008
S786K786NaaAaaT3232B.1.6370.002338
S786K786QAaaCaa2626B.1.1.70.000023
S786K786RaAaaGa2424AY.260.000679
S786K786KaaAaaG2323B.1.1.70.000021
S786K786TaAaaCa1818All0.000003
S786K786KaaAaaG1414AY.1020.000371
S786K786delAAA---1414B.1.1.70.000013
S786K786TaAaaCa1313P.10.000205
S786K786IaAaaTa1010All0.000002
S786K786KaaAaaG1010AY.440.000061
S786K786KaaAaaG1010B.1.617.20.000038
S786K786delAAA---1010B.1.6210.000885
S786K786EAaaGaa99AY.40.000014
S786K786RaAaaGa99AY.40.000014
S786K786RaAaaGa88B.1.1.70.000007
S786K786KaaAaaG88B.1.1770.000105
S786K786KaaAaaG88B.1.20.00007
S786K786del1Aaa-aa67All0.000001
S786K786del1aaAaa-17All0
S786K786delAAA---77AY.250.000042
S786K786EAaaGaa77AY.30.00007
S786K786NaaAaaC77AY.40.000011
S786K786EAaaGaa66AY.290.000095
S786K786delAAA---66P.1.150.001394
S786K786KaaAaaG55AY.1210.000677
S786K786NaaAaaT55AY.290.000079
S786K786KaaAaaG55AY.40.000008
S786K786delAAA---55B.10.000046
S786K786EAaaGaa55B.1.1.70.000004
S786K786EAaaGaa55B.1.617.20.000019
S786K786delAAA---55P.10.000079
S786K786KaaAaaG44AY.250.000024
S786K786delAAA---44AY.430.000018
S786K786EAaaGaa44AY.46.60.000289
S786K786NaaAaaT44AY.60.000165
S786K786KaaAaaG44B.1.3510.000119
S786K786KaaAaaG33AY.1170.000254
S786K786EAaaGaa33AY.360.000445
S786K786RaAaaGa33AY.360.000445
S786K786EAaaGaa33AY.430.000013
S786K786QAaaCaa33B.10.000027
S786K786NaaAaaT33B.10.000027
S786K786delAAA---33B.1.10.000054
S786K786KaaAaaG33B.1.10.000054
S786K786NaaAaaT33B.1.2430.000209
S786K786IaAaaTa33B.1.3510.000089
S786K786IaAaaTa220.111111
S786K786LAAaCTa220.111111
S786K786QAaaCaa220.111111
S786K786SaAAaGT22All0
S786K786LAAaCTa22All0
S786K786del2AAa--a22All0
S786K786EAaaGaa22AY.1030.000012
S786K786KaaAaaG22AY.1190.000071
S786K786NaaAaaC22AY.330.000134
S786K786delAAA---22AY.34.10.00102
S786K786delAAA---22AY.40.000003
S786K786EAaaGaa22AY.440.000012
S786K786RaAaaGa22AY.440.000012
S786K786RaAaaGa22B.10.000018
S786K786del1Aaa-aa22B.10.000018
S786K786RaAaaGa22B.1.1600.000062
S786K786KaaAaaG22B.1.177.210.000153
S786K786KaaAaaG22B.1.351.20.000605
S786K786TaAaaCa22B.1.6090.000959
S786K786RaAaaGa22B.1.617.20.000008
S786K786delAAA---22B.1.617.20.000008
S786K786NaaAaaT12B.1.617.20.000004
S786K786NaaAaaC12B.1.617.20.000004
S786K786EAaaGaa22D.20.00015
S786K786QAaaCaa22P.1.140.000096
S786K786TaAaaCa22P.1.140.000096
S786K786delAAA---22P.1.70.000639
S786K786KaaAaaG22P.30.00319
S786K786XAaaTaa110.055556
S786K786delAAA---11A0.000387
S786K786CAAATGT11All0
S786K786DAaAGaC11All0
S786K786XAaaTaa11All0
S786K786KaaAaaG11AW.10.003049
S786K786delAAA---11AY.100.00053
S786K786delAAA---11AY.1000.000046
S786K786RaAaaGa11AY.1030.000006
S786K786KaaAaaG11AY.1030.000006
S786K786delAAA---11AY.1030.000006
S786K786delAAA---11AY.1200.000037
S786K786IaAaaTa11AY.130.000161
S786K786KaaAaaG11AY.140.000088
S786K786RaAaaGa11AY.200.000039
S786K786delAAA---11AY.240.000431
S786K786DAaAGaC11AY.250.000006
S786K786KaaAaaG11AY.290.000016
S786K786delAAA---11AY.290.000016
S786K786IaAaaTa11AY.30.00001
S786K786delAAA---11AY.30.00001
S786K786RaAaaGa11AY.340.000097
S786K786QAaaCaa11AY.360.000148
S786K786KaaAaaG11AY.390.000025
S786K786NaaAaaT11AY.430.000004
S786K786del1Aaa-aa11AY.430.000004
S786K786KaaAaaG11AY.430.000004
S786K786IaAaaTa11AY.430.000004
S786K786TaAaaCa11AY.440.000006
S786K786delAAA---11AY.450.000122
S786K786KaaAaaG11AY.50.000021
S786K786delAAA---11AY.5.30.000337
S786K786del1aaAaa-11AY.540.000095
S786K786RaAaaGa11AY.670.000464
S786K786delAAA---11AY.680.000274
S786K786QAaaCaa11AY.720.001361
S786K786EAaaGaa11AY.750.000056
S786K786RaAaaGa11AY.750.000056
S786K786delAAA---11AY.750.000056
S786K786KaaAaaG11AY.99.20.000092
S786K786RaAaaGa11B0.000128
S786K786del2AAa--a11B.10.000009
S786K786IaAaaTa11B.10.000009
S786K786EAaaGaa11B.10.000009
S786K786KaaAaaG11B.10.000009
S786K786del1Aaa-aa11B.1.10.000018
S786K786delAAA---11B.1.1.1390.022727
S786K786NaaAaaT11B.1.1.1640.005155
S786K786delAAA---11B.1.1.2360.006897
S786K786KaaAaaG11B.1.1.2790.001121
S786K786delAAA---11B.1.1.2910.000742
S786K786delAAA---11B.1.1.3150.008475
S786K786delAAA---11B.1.1.3720.000689
S786K786RaAaaGa11B.1.1.400.034483
S786K786delAAA---11B.1.1.4090.002833
S786K786KaaAaaG11B.1.1.4480.002033
S786K786QAaaCaa11B.1.1.5190.00004
S786K786EAaaGaa11B.1.1.5190.00004
S786K786del1Aaa-aa11B.1.1.70.000001
S786K786SaAAaGT11B.1.1.70.000001
S786K786NaaAaaC11B.1.1.70.000001
S786K786NaaAaaC11B.1.130.002375
S786K786delAAA---11B.1.1400.018868
S786K786KaaAaaG11B.1.1600.000031
S786K786RaAaaGa11B.1.1770.000013
S786K786EAaaGaa11B.1.177.570.000281
S786K786EAaaGaa11B.1.177.620.001192
S786K786KaaAaaG11B.1.177.810.000189
S786K786delAAA---11B.1.20.000009
S786K786EAaaGaa11B.1.20.000009
S786K786IaAaaTa11B.1.20.000009
S786K786NaaAaaC11B.1.20.000009
S786K786QAaaCaa11B.1.20.000009
S786K786KaaAaaG11B.1.2430.00007
S786K786delAAA---11B.1.2580.000067
S786K786delAAA---11B.1.258.170.000104
S786K786EAaaGaa11B.1.3510.00003
S786K786delAAA---11B.1.36.180.00042
S786K786SaAAaGT11B.1.4270.00005
S786K786RaAaaGa11B.1.4270.00005
S786K786NaaAaaT11B.1.4270.00005
S786K786RaAaaGa11B.1.4290.000024
S786K786KaaAaaG11B.1.4560.003268
S786K786RaAaaGa11B.1.466.20.000391
S786K786delAAA---11B.1.5250.000113
S786K786delAAA---11B.1.5610.000397
S786K786del1Aaa-aa11B.1.5820.000491
S786K786NaaAaaT11B.1.5900.004545
S786K786RaAaaGa11B.1.5950.000261
S786K786KaaAaaG11B.1.5960.000087
S786K786del2AAa--a11B.1.617.20.000004
S786K786CAAATGT11B.1.617.20.000004
S786K786delAAA---11B.1.6200.000946
S786K786KaaAaaG11B.1.6360.006711
S786K786delAAA---11B.1.6380.052632
S786K786EAaaGaa11B.1.90.006173
S786K786QAaaCaa11B.1.90.006173
S786K786delAAA---11B.340.013699
S786K786delAAA---11C.370.000116
S786K786KaaAaaG11C.370.000116
S786K786QAaaCaa11D.20.000075
S786K786KaaAaaG11P.10.000016
S786K786QAaaCaa11P.10.000016
S786K786EAaaGaa11P.10.000016
S786K786delAAA---11P.1.10.000318
S786K786QAaaCaa11P.1.120.000484
S786K786delAAA---11P.1.130.000898
S786K786EAaaGaa11P.1.20.001156
S786K786delAAA---11Q.20.000613
S786K786delAAA---11Q.80.000165