CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 764 | N764N | syn | aaC | aaT | 5859 | 5859 | 1 | 23852-23854 | |
S | 764 | N764K | nonsyn | aaC | aaA | 344 | 338 | 0.982558 | 23852-23854 | |
S | 764 | N764K | nonsyn | aaC | aaG | 344 | 6 | 0.0174419 | 23852-23854 | |
S | 764 | N764del | del | AAC | --- | 80 | 80 | 1 | 23852-23854 | |
S | 764 | N764S | nonsyn | aAc | aGc | 18 | 18 | 1 | 23852-23854 | |
S | 764 | N764H | nonsyn | Aac | Cac | 11 | 11 | 1 | 23852-23854 | |
S | 764 | N764Y | nonsyn | Aac | Tac | 10 | 10 | 1 | 23852-23854 | |
S | 764 | N764del1 | del | aaC | aa- | 9 | 9 | 1 | 23852-23854 | |
S | 764 | N764T | nonsyn | aAc | aCc | 7 | 7 | 1 | 23852-23854 | |
S | 764 | N764I | nonsyn | aAC | aTA | 6 | 3 | 0.5 | 23852-23854 | |
S | 764 | N764I | nonsyn | aAc | aTc | 6 | 3 | 0.5 | 23852-23854 | |
S | 764 | N764D | nonsyn | Aac | Gac | 3 | 3 | 1 | 23852-23854 | |
S | 764 | N764R | nonsyn | aAC | aGA | 1 | 1 | 1 | 23852-23854 | |
S | 764 | N764del2 | del | AAC | --N | 1 | 1 | 1 | 23852-23854 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 764 | N764N | aaC | aaT | 5859 | 5859 | All | 0.001121 |
S | 764 | N764N | aaC | aaT | 2781 | 2781 | B.1.1.7 | 0.00249 |
S | 764 | N764N | aaC | aaT | 542 | 542 | AY.4 | 0.000844 |
S | 764 | N764K | aaC | aaA | 338 | 344 | All | 0.000065 |
S | 764 | N764K | aaC | aaG | 6 | 344 | All | 0.000001 |
S | 764 | N764K | aaC | aaA | 291 | 291 | B.1.634 | 0.996575 |
S | 764 | N764N | aaC | aaT | 248 | 248 | B.1.2 | 0.002184 |
S | 764 | N764N | aaC | aaT | 174 | 174 | B.1.177 | 0.002291 |
S | 764 | N764N | aaC | aaT | 157 | 157 | AY.44 | 0.000956 |
S | 764 | N764N | aaC | aaT | 149 | 149 | B.1.177.82 | 0.071122 |
S | 764 | N764N | aaC | aaT | 111 | 111 | B.1.617.2 | 0.000418 |
S | 764 | N764del | AAC | --- | 80 | 80 | All | 0.000015 |
S | 764 | N764N | aaC | aaT | 72 | 72 | AY.43 | 0.000319 |
S | 764 | N764N | aaC | aaT | 64 | 64 | B.1 | 0.000586 |
S | 764 | N764N | aaC | aaT | 61 | 61 | B.1.621 | 0.0054 |
S | 764 | N764N | aaC | aaT | 60 | 60 | B.1.177.4 | 0.012664 |
S | 764 | N764N | aaC | aaT | 58 | 58 | P.1 | 0.000914 |
S | 764 | N764N | aaC | aaT | 57 | 57 | B.1.1.203 | 0.966102 |
S | 764 | N764N | aaC | aaT | 56 | 56 | AY.103 | 0.000348 |
S | 764 | N764N | aaC | aaT | 50 | 50 | AY.29 | 0.000789 |
S | 764 | N764N | aaC | aaT | 50 | 50 | B.1.561 | 0.019849 |
S | 764 | N764N | aaC | aaT | 44 | 44 | AY.25 | 0.000265 |
S | 764 | N764N | aaC | aaT | 44 | 44 | P.1.14 | 0.002103 |
S | 764 | N764N | aaC | aaT | 43 | 43 | B.1.526 | 0.001011 |
S | 764 | N764N | aaC | aaT | 42 | 42 | AY.5 | 0.000867 |
S | 764 | N764N | aaC | aaT | 38 | 38 | B.1.1.519 | 0.001509 |
S | 764 | N764N | aaC | aaT | 33 | 33 | AY.102 | 0.000875 |
S | 764 | N764N | aaC | aaT | 32 | 32 | B.1.427 | 0.001616 |
S | 764 | N764N | aaC | aaT | 28 | 28 | AY.4.2 | 0.000607 |
S | 764 | N764N | aaC | aaT | 27 | 27 | Q.4 | 0.012278 |
S | 764 | N764N | aaC | aaT | 22 | 22 | B.1.351 | 0.000654 |
S | 764 | N764N | aaC | aaT | 21 | 21 | AY.9.2 | 0.000771 |
S | 764 | N764N | aaC | aaT | 21 | 21 | B.1.240 | 0.004527 |
S | 764 | N764N | aaC | aaT | 21 | 21 | B.1.265 | 0.026684 |
S | 764 | N764N | aaC | aaT | 20 | 20 | AY.3.1 | 0.001705 |
S | 764 | N764N | aaC | aaT | 19 | 19 | B.1.1.1 | 0.006207 |
S | 764 | N764S | aAc | aGc | 18 | 18 | All | 0.000003 |
S | 764 | N764N | aaC | aaT | 18 | 18 | AY.3 | 0.000179 |
S | 764 | N764N | aaC | aaT | 18 | 18 | AY.47 | 0.00056 |
S | 764 | N764N | aaC | aaT | 18 | 18 | Q.1 | 0.002274 |
S | 764 | N764N | aaC | aaT | 16 | 16 | AY.14 | 0.001408 |
S | 764 | N764N | aaC | aaT | 14 | 14 | AY.20 | 0.000544 |
S | 764 | N764N | aaC | aaT | 14 | 14 | AY.45 | 0.001704 |
S | 764 | N764N | aaC | aaT | 14 | 14 | AY.6 | 0.000576 |
S | 764 | N764N | aaC | aaT | 14 | 14 | B.1.1 | 0.000254 |
S | 764 | N764N | aaC | aaT | 14 | 14 | B.1.1.222 | 0.002856 |
S | 764 | N764N | aaC | aaT | 14 | 14 | G.1 | 0.583333 |
S | 764 | N764N | aaC | aaT | 13 | 13 | A.1 | 0.003664 |
S | 764 | N764N | aaC | aaT | 13 | 13 | AY.26 | 0.000368 |
S | 764 | N764N | aaC | aaT | 13 | 13 | AY.61 | 0.001362 |
S | 764 | N764N | aaC | aaT | 13 | 13 | B.1.36.17 | 0.006423 |
S | 764 | N764N | aaC | aaT | 13 | 13 | B.1.429 | 0.000306 |
S | 764 | N764N | aaC | aaT | 13 | 13 | B.1.627 | 0.026263 |
S | 764 | N764N | aaC | aaT | 12 | 12 | AY.117 | 0.001014 |
S | 764 | N764N | aaC | aaT | 12 | 12 | AY.119 | 0.000424 |
S | 764 | N764N | aaC | aaT | 12 | 12 | AY.39 | 0.000297 |
S | 764 | N764H | Aac | Cac | 11 | 11 | All | 0.000002 |
S | 764 | N764N | aaC | aaT | 11 | 11 | AY.75 | 0.000616 |
S | 764 | N764N | aaC | aaT | 11 | 11 | B.1.1.214 | 0.00061 |
S | 764 | N764del | AAC | --- | 11 | 11 | B.1.621 | 0.000974 |
S | 764 | N764Y | Aac | Tac | 10 | 10 | All | 0.000002 |
S | 764 | N764N | aaC | aaT | 10 | 10 | B.1.160 | 0.000312 |
S | 764 | N764del1 | aaC | aa- | 9 | 9 | All | 0.000002 |
S | 764 | N764N | aaC | aaT | 9 | 9 | AY.33 | 0.000601 |
S | 764 | N764N | aaC | aaT | 9 | 9 | B.1.1.176 | 0.003954 |
S | 764 | N764N | aaC | aaT | 9 | 9 | B.1.1.291 | 0.006682 |
S | 764 | N764N | aaC | aaT | 9 | 9 | B.1.466.2 | 0.003521 |
S | 764 | N764del | AAC | --- | 9 | 9 | P.1.15 | 0.002091 |
S | 764 | N764N | aaC | aaT | 8 | 8 | AY.46.6 | 0.000578 |
S | 764 | N764N | aaC | aaT | 8 | 8 | B.1.243 | 0.000557 |
S | 764 | N764N | aaC | aaT | 8 | 8 | B.1.258.19 | 0.056738 |
S | 764 | N764N | aaC | aaT | 8 | 8 | P.1.1 | 0.002541 |
S | 764 | N764T | aAc | aCc | 7 | 7 | All | 0.000001 |
S | 764 | N764del | AAC | --- | 7 | 7 | AY.43 | 0.000031 |
S | 764 | N764N | aaC | aaT | 7 | 7 | B.1.160.22 | 0.047297 |
S | 764 | N764N | aaC | aaT | 7 | 7 | B.1.36 | 0.001021 |
S | 764 | N764N | aaC | aaT | 7 | 7 | C.37 | 0.000812 |
S | 764 | N764I | aAc | aTc | 3 | 6 | All | 0.000001 |
S | 764 | N764I | aAC | aTA | 3 | 6 | All | 0.000001 |
S | 764 | N764N | aaC | aaT | 6 | 6 | AY.16.1 | 0.00282 |
S | 764 | N764N | aaC | aaT | 6 | 6 | AY.46 | 0.000624 |
S | 764 | N764N | aaC | aaT | 6 | 6 | AY.46.5 | 0.00119 |
S | 764 | N764N | aaC | aaT | 6 | 6 | AY.54 | 0.000572 |
S | 764 | N764N | aaC | aaT | 6 | 6 | AY.76 | 0.028986 |
S | 764 | N764del | AAC | --- | 6 | 6 | B.1 | 0.000055 |
S | 764 | N764K | aaC | aaA | 5 | 6 | B.1 | 0.000046 |
S | 764 | N764K | aaC | aaG | 1 | 6 | B.1 | 0.000009 |
S | 764 | N764N | aaC | aaT | 6 | 6 | B.1.1.448 | 0.012195 |
S | 764 | N764K | aaC | aaA | 5 | 6 | B.1.2 | 0.000044 |
S | 764 | N764K | aaC | aaG | 1 | 6 | B.1.2 | 0.000009 |
S | 764 | N764N | aaC | aaT | 6 | 6 | B.1.234 | 0.000792 |
S | 764 | N764del | AAC | --- | 6 | 6 | P.1 | 0.000095 |
S | 764 | N764N | aaC | aaT | 6 | 6 | R.1 | 0.00054 |
S | 764 | N764N | aaC | aaT | 5 | 5 | AY.120 | 0.000186 |
S | 764 | N764N | aaC | aaT | 5 | 5 | AY.27 | 0.000324 |
S | 764 | N764N | aaC | aaT | 5 | 5 | AY.34 | 0.000485 |
S | 764 | N764N | aaC | aaT | 5 | 5 | AY.36 | 0.000741 |
S | 764 | N764N | aaC | aaT | 5 | 5 | AY.5.3 | 0.001687 |
S | 764 | N764N | aaC | aaT | 5 | 5 | AY.65 | 0.002665 |
S | 764 | N764N | aaC | aaT | 5 | 5 | B.1.1.306 | 0.002192 |
S | 764 | N764N | aaC | aaT | 5 | 5 | B.1.1.428 | 0.04717 |
S | 764 | N764N | aaC | aaT | 5 | 5 | B.1.567 | 0.016667 |
S | 764 | N764N | aaC | aaT | 4 | 4 | AY.100 | 0.000184 |
S | 764 | N764N | aaC | aaT | 4 | 4 | AY.121 | 0.000541 |
S | 764 | N764K | aaC | aaA | 4 | 4 | AY.43 | 0.000018 |
S | 764 | N764N | aaC | aaT | 4 | 4 | AY.78 | 0.006163 |
S | 764 | N764N | aaC | aaT | 4 | 4 | AY.98 | 0.000316 |
S | 764 | N764N | aaC | aaT | 4 | 4 | B.1.177.87 | 0.002911 |
S | 764 | N764N | aaC | aaT | 4 | 4 | B.1.221 | 0.000284 |
S | 764 | N764N | aaC | aaT | 4 | 4 | B.1.239 | 0.004884 |
S | 764 | N764K | aaC | aaA | 3 | 4 | B.1.427 | 0.000151 |
S | 764 | N764K | aaC | aaG | 1 | 4 | B.1.427 | 0.00005 |
S | 764 | N764K | aaC | aaA | 4 | 4 | B.1.596 | 0.000349 |
S | 764 | N764N | aaC | aaT | 4 | 4 | P.2 | 0.000747 |
S | 764 | N764N | aaC | aaT | 3 | 3 | A.21 | 0.00831 |
S | 764 | N764D | Aac | Gac | 3 | 3 | All | 0.000001 |
S | 764 | N764N | aaC | aaT | 3 | 3 | AY.113 | 0.000427 |
S | 764 | N764N | aaC | aaT | 3 | 3 | AY.120.2.1 | 0.001495 |
S | 764 | N764N | aaC | aaT | 3 | 3 | AY.16 | 0.001139 |
S | 764 | N764del | AAC | --- | 3 | 3 | AY.25 | 0.000018 |
S | 764 | N764T | aAc | aCc | 3 | 3 | AY.25 | 0.000018 |
S | 764 | N764S | aAc | aGc | 3 | 3 | AY.4 | 0.000005 |
S | 764 | N764N | aaC | aaT | 3 | 3 | AY.75.1 | 0.000541 |
S | 764 | N764N | aaC | aaT | 3 | 3 | AY.77 | 0.003382 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.1.39 | 0.001529 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.1.434 | 0.001046 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.1.63 | 0.001157 |
S | 764 | N764Y | Aac | Tac | 3 | 3 | B.1.1.7 | 0.000003 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.258 | 0.0002 |
S | 764 | N764I | aAC | aTA | 3 | 3 | B.1.351 | 0.000089 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.436 | 0.003086 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.470 | 0.004213 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.619.1 | 0.001924 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.1.628 | 0.001057 |
S | 764 | N764N | aaC | aaT | 3 | 3 | B.40 | 0.001093 |
S | 764 | N764N | aaC | aaT | 3 | 3 | C.16 | 0.003181 |
S | 764 | N764N | aaC | aaT | 3 | 3 | C.35 | 0.002322 |
S | 764 | N764N | aaC | aaT | 3 | 3 | D.2 | 0.000225 |
S | 764 | N764N | aaC | aaT | 3 | 3 | P.3 | 0.004785 |
S | 764 | N764N | aaC | aaT | 2 | 2 | A | 0.000774 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.107 | 0.000932 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.13 | 0.000322 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.23 | 0.000139 |
S | 764 | N764K | aaC | aaA | 2 | 2 | AY.25 | 0.000012 |
S | 764 | N764H | Aac | Cac | 2 | 2 | AY.3 | 0.00002 |
S | 764 | N764del | AAC | --- | 2 | 2 | AY.34.1 | 0.00102 |
S | 764 | N764H | Aac | Cac | 2 | 2 | AY.4 | 0.000003 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.42 | 0.00008 |
S | 764 | N764S | aAc | aGc | 2 | 2 | AY.43 | 0.000009 |
S | 764 | N764H | Aac | Cac | 2 | 2 | AY.43 | 0.000009 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.68 | 0.000547 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.74 | 0.000231 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.91 | 0.001461 |
S | 764 | N764N | aaC | aaT | 2 | 2 | AY.95 | 0.001522 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B | 0.000256 |
S | 764 | N764K | aaC | aaA | 2 | 2 | B.1.1 | 0.000036 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.159 | 0.009346 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.216 | 0.001781 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.28 | 0.000622 |
S | 764 | N764K | aaC | aaA | 2 | 2 | B.1.1.28 | 0.000622 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.297 | 0.004474 |
S | 764 | N764del1 | aaC | aa- | 2 | 2 | B.1.1.306 | 0.000877 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.312 | 0.003824 |
S | 764 | N764del | AAC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.317 | 0.000823 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.351 | 0.005587 |
S | 764 | N764K | aaC | aaA | 2 | 2 | B.1.1.519 | 0.000079 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.1.67 | 0.009132 |
S | 764 | N764S | aAc | aGc | 2 | 2 | B.1.1.7 | 0.000002 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.126 | 0.002551 |
S | 764 | N764K | aaC | aaA | 2 | 2 | B.1.177 | 0.000026 |
S | 764 | N764K | aaC | aaA | 2 | 2 | B.1.177.19 | 0.002861 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.177.55 | 0.004662 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.36.16 | 0.002849 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.36.29 | 0.001035 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.369 | 0.00057 |
S | 764 | N764S | aAc | aGc | 2 | 2 | B.1.429 | 0.000047 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.438.1 | 0.000215 |
S | 764 | N764del | AAC | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 764 | N764K | aaC | aaA | 2 | 2 | B.1.526 | 0.000047 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.575 | 0.000607 |
S | 764 | N764N | aaC | aaT | 2 | 2 | B.1.605 | 0.011905 |
S | 764 | N764del | AAC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 764 | N764del | AAC | --- | 2 | 2 | C.37 | 0.000232 |
S | 764 | N764T | aAc | aCc | 2 | 2 | D.2 | 0.00015 |
S | 764 | N764del | AAC | --- | 2 | 2 | P.1.7 | 0.000639 |
S | 764 | N764K | aaC | aaG | 1 | 1 | A | 0.000387 |
S | 764 | N764del | AAC | --- | 1 | 1 | A | 0.000387 |
S | 764 | N764N | aaC | aaT | 1 | 1 | A.2.5 | 0.000499 |
S | 764 | N764N | aaC | aaT | 1 | 1 | A.2.5.3 | 0.010309 |
S | 764 | N764N | aaC | aaT | 1 | 1 | A.27 | 0.001656 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AA.2 | 0.007692 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AE.4 | 0.043478 |
S | 764 | N764R | aAC | aGA | 1 | 1 | All | 0 |
S | 764 | N764del2 | AAC | --N | 1 | 1 | All | 0 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.10 | 0.00053 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.100 | 0.000046 |
S | 764 | N764Y | Aac | Tac | 1 | 1 | AY.103 | 0.000006 |
S | 764 | N764K | aaC | aaA | 1 | 1 | AY.103 | 0.000006 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.103 | 0.000006 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.106 | 0.000335 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
S | 764 | N764H | Aac | Cac | 1 | 1 | AY.111 | 0.000183 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.111 | 0.000183 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.116 | 0.000287 |
S | 764 | N764del1 | aaC | aa- | 1 | 1 | AY.117 | 0.000085 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.118 | 0.000063 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.120 | 0.000037 |
S | 764 | N764H | Aac | Cac | 1 | 1 | AY.23 | 0.00007 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.23.1 | 0.000417 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.24 | 0.000431 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.24 | 0.000431 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.28 | 0.00189 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.29 | 0.000016 |
S | 764 | N764Y | Aac | Tac | 1 | 1 | AY.3 | 0.00001 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 764 | N764D | Aac | Gac | 1 | 1 | AY.3 | 0.00001 |
S | 764 | N764K | aaC | aaA | 1 | 1 | AY.33 | 0.000067 |
S | 764 | N764S | aAc | aGc | 1 | 1 | AY.34 | 0.000097 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.34.1 | 0.00051 |
S | 764 | N764H | Aac | Cac | 1 | 1 | AY.34.1 | 0.00051 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.35 | 0.000233 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.39.1 | 0.00004 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.39.2 | 0.001541 |
S | 764 | N764T | aAc | aCc | 1 | 1 | AY.4 | 0.000002 |
S | 764 | N764Y | Aac | Tac | 1 | 1 | AY.4 | 0.000002 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.4.3 | 0.000842 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.40 | 0.000964 |
S | 764 | N764H | Aac | Cac | 1 | 1 | AY.42 | 0.00004 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.42 | 0.00004 |
S | 764 | N764R | aAC | aGA | 1 | 1 | AY.43 | 0.000004 |
S | 764 | N764K | aaC | aaA | 1 | 1 | AY.44 | 0.000006 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.45 | 0.000122 |
S | 764 | N764S | aAc | aGc | 1 | 1 | AY.45 | 0.000122 |
S | 764 | N764Y | Aac | Tac | 1 | 1 | AY.47 | 0.000031 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.52 | 0.000814 |
S | 764 | N764S | aAc | aGc | 1 | 1 | AY.52 | 0.000814 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.54 | 0.000095 |
S | 764 | N764del1 | aaC | aa- | 1 | 1 | AY.55 | 0.000917 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.56 | 0.001605 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.58 | 0.000907 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.67 | 0.000464 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.68 | 0.000274 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.69 | 0.000187 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.70 | 0.000209 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
S | 764 | N764Y | Aac | Tac | 1 | 1 | AY.75 | 0.000056 |
S | 764 | N764del | AAC | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 764 | N764S | aAc | aGc | 1 | 1 | AY.9.2 | 0.000037 |
S | 764 | N764N | aaC | aaT | 1 | 1 | AY.99.2 | 0.000092 |
S | 764 | N764S | aAc | aGc | 1 | 1 | B.1 | 0.000009 |
S | 764 | N764H | Aac | Cac | 1 | 1 | B.1 | 0.000009 |
S | 764 | N764del1 | aaC | aa- | 1 | 1 | B.1 | 0.000009 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.189 | 0.001513 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.191 | 0.004762 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.1.214 | 0.000055 |
S | 764 | N764Y | Aac | Tac | 1 | 1 | B.1.1.216 | 0.00089 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.220 | 0.001859 |
S | 764 | N764S | aAc | aGc | 1 | 1 | B.1.1.232 | 0.001815 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 764 | N764K | aaC | aaG | 1 | 1 | B.1.1.275 | 0.011236 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 764 | N764S | aAc | aGc | 1 | 1 | B.1.1.326 | 0.001761 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.373 | 0.02381 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.416 | 0.000905 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.1.464 | 0.001473 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.525 | 0.005464 |
S | 764 | N764del1 | aaC | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 764 | N764D | Aac | Gac | 1 | 1 | B.1.1.7 | 0.000001 |
S | 764 | N764K | aaC | aaG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.70 | 0.000341 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.83 | 0.00271 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.1.89 | 0.006061 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.131 | 0.008772 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.147 | 0.000756 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 764 | N764del1 | aaC | aa- | 1 | 1 | B.1.177 | 0.000013 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.177.15 | 0.000631 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.177.30 | 0.002513 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.177.33 | 0.001645 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.177.35 | 0.000691 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.177.50 | 0.004695 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.177.7 | 0.000165 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.189 | 0.004292 |
S | 764 | N764T | aAc | aCc | 1 | 1 | B.1.2 | 0.000009 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 764 | N764Y | Aac | Tac | 1 | 1 | B.1.2 | 0.000009 |
S | 764 | N764I | aAc | aTc | 1 | 1 | B.1.2 | 0.000009 |
S | 764 | N764del1 | aaC | aa- | 1 | 1 | B.1.2 | 0.000009 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.210 | 0.002132 |
S | 764 | N764S | aAc | aGc | 1 | 1 | B.1.221 | 0.000071 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.232 | 0.000537 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.240 | 0.000216 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.240.1 | 0.025 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.241 | 0.000812 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.265 | 0.001271 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.270 | 0.005618 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.309 | 0.047619 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.351 | 0.00003 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.36.12 | 0.009615 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.378 | 0.006849 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.396 | 0.000706 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.411 | 0.003704 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.422 | 0.000812 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.448 | 0.002625 |
S | 764 | N764I | aAc | aTc | 1 | 1 | B.1.456 | 0.003268 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.459 | 0.004082 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.525 | 0.000113 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.575.2 | 0.004808 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.576 | 0.000907 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.577 | 0.000687 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.582 | 0.000491 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.595 | 0.000261 |
S | 764 | N764del1 | aaC | aa- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 764 | N764S | aAc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.617.3 | 0.002985 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.618 | 0.004032 |
S | 764 | N764K | aaC | aaA | 1 | 1 | B.1.619 | 0.000871 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.621.1 | 0.000506 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.634 | 0.003425 |
S | 764 | N764del | AAC | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 764 | N764N | aaC | aaT | 1 | 1 | B.1.84 | 0.020833 |
S | 764 | N764N | aaC | aaT | 1 | 1 | C.1.2 | 0.004255 |
S | 764 | N764K | aaC | aaA | 1 | 1 | C.16 | 0.00106 |
S | 764 | N764N | aaC | aaT | 1 | 1 | C.36 | 0.000911 |
S | 764 | N764N | aaC | aaT | 1 | 1 | C.36.3 | 0.000567 |
S | 764 | N764D | Aac | Gac | 1 | 1 | D.2 | 0.000075 |
S | 764 | N764I | aAc | aTc | 1 | 1 | D.2 | 0.000075 |
S | 764 | N764N | aaC | aaT | 1 | 1 | N.9 | 0.005952 |
S | 764 | N764del2 | AAC | --N | 1 | 1 | P.1 | 0.000016 |
S | 764 | N764N | aaC | aaT | 1 | 1 | P.1.12 | 0.000484 |
S | 764 | N764del | AAC | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 764 | N764N | aaC | aaT | 1 | 1 | P.1.17 | 0.000162 |
S | 764 | N764N | aaC | aaT | 1 | 1 | P.1.17.1 | 0.000875 |
S | 764 | N764N | aaC | aaT | 1 | 1 | P.6 | 0.003145 |
S | 764 | N764N | aaC | aaT | 1 | 1 | Q.3 | 0.000145 |
S | 764 | N764del | AAC | --- | 1 | 1 | Q.8 | 0.000165 |
S | 764 | N764N | aaC | aaT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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