CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 763

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S763L763LsynTtaCta8155740.70429523849-23851
S763L763LsynttAttG8152400.29447923849-23851
S763L763LsynTtACtC81510.0012269923849-23851
S763L763deldelTTA---8585123849-23851
S763L763FnonsynttAttT44400.90909123849-23851
S763L763FnonsynttAttC4440.090909123849-23851
S763L763SnonsyntTatCa23220.95652223849-23851
S763L763SnonsyntTAtCT2310.043478323849-23851
S763L763VnonsynTtaGta980.88888923849-23851
S763L763VnonsynTtAGtT910.11111123849-23851
S763L763XnonsyntTatAa88123849-23851
S763L763AnonsynTTaGCa88123849-23851
S763L763del1delttAtt-860.7523849-23851
S763L763del1delTtANt-810.12523849-23851
S763L763del1delTTA-NN810.12523849-23851
S763L763InonsynTtaAta77123849-23851
S763L763TnonsynTTaACa22123849-23851
S763L763QnonsynTTaCAa11123849-23851
S763L763KnonsynTTaAAa11123849-23851
S763L763EnonsynTTaGAa11123849-23851
S763L763YnonsyntTAtAT11123849-23851
S763L763DnonsynTTAGAT11123849-23851

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S763L763LTtaCta574815All0.00011
S763L763LttAttG240815All0.000046
S763L763LTtACtC1815All0
S763L763delTTA---8585All0.000016
S763L763LTtaCta6980B.1.1.70.000062
S763L763LttAttG1180B.1.1.70.00001
S763L763LttAttG7273B.1.5260.001692
S763L763LTtaCta173B.1.5260.000024
S763L763LTtaCta7272AY.260.002038
S763L763LTtaCta7172B.1.1.2140.003937
S763L763LttAttG172B.1.1.2140.000055
S763L763LttAttG6464B.1.1.2610.551724
S763L763LTtaCta4549AY.40.00007
S763L763LttAttG449AY.40.000006
S763L763LTtaCta4747AY.870.039134
S763L763LttAttG4747P.1.150.01092
S763L763FttAttT4044All0.000008
S763L763FttAttC444All0.000001
S763L763LTtaCta2828B.1.691
S763L763StTatCa2223All0.000004
S763L763StTAtCT123All0
S763L763LTtaCta1922B.1.617.20.000072
S763L763LttAttG322B.1.617.20.000011
S763L763LTtaCta2121AY.440.000128
S763L763LTtaCta1919B.1.10.000345
S763L763LTtaCta1818AZ.10.015611
S763L763LttAttG1015AY.30.000099
S763L763LTtaCta515AY.30.00005
S763L763LTtaCta1112AY.1020.000292
S763L763LttAttG112AY.1020.000027
S763L763FttAttT1112B.1.1.70.00001
S763L763FttAttC112B.1.1.70.000001
S763L763LTtaCta1111B.1.1600.000343
S763L763LTtaCta1011B.1.1770.000132
S763L763LTtACtC111B.1.1770.000013
S763L763delTTA---1111B.1.6210.000974
S763L763LTtaCta1010AY.34.10.005099
S763L763LTtaCta1010AY.360.001482
S763L763VTtaGta89All0.000002
S763L763VTtAGtT19All0
S763L763LTtaCta99AY.430.00004
S763L763FttAttT99B.1.20.000079
S763L763delTTA---99P.1.150.002091
S763L763ATTaGCa88All0.000002
S763L763XtTatAa88All0.000002
S763L763del1ttAtt-68All0.000001
S763L763del1TTA-NN18All0
S763L763del1TtANt-18All0
S763L763LTtaCta88B.1.1.3690.00357
S763L763ITtaAta77All0.000001
S763L763delTTA---77AY.430.000031
S763L763ATTaGCa77B.1.3510.000208
S763L763LTtaCta77B.1.4290.000165
S763L763LTtaCta77B.1.6370.000512
S763L763delTTA---77P.10.00011
S763L763delTTA---66B.10.000055
S763L763StTatCa56B.1.1.70.000004
S763L763StTAtCT16B.1.1.70.000001
S763L763LTtaCta66C.370.000696
S763L763LttAttG55AY.4.40.002046
S763L763LTtaCta35B.10.000027
S763L763LttAttG25B.10.000018
S763L763LTtaCta55B.1.1.10.001633
S763L763LTtaCta44AY.1190.000141
S763L763LTtaCta44AY.99.20.000369
S763L763ITtaAta44B.1.5960.000349
S763L763LTtaCta44P.1.140.000191
S763L763LttAttG23AY.1000.000092
S763L763LTtaCta13AY.1000.000046
S763L763delTTA---33AY.250.000018
S763L763FttAttT33AY.40.000005
S763L763StTatCa33AY.40.000005
S763L763LTtaCta33AY.590.001589
S763L763del1ttAtt-33B.10.000027
S763L763LTtaCta33B.1.1.2360.02069
S763L763LTtaCta33B.1.20.000026
S763L763LTtaCta33B.1.2400.000647
S763L763FttAttT23B.1.4290.000047
S763L763FttAttC13B.1.4290.000024
S763L763StTatCa33B.1.617.20.000011
S763L763TTTaACa22All0
S763L763LTtaCta22AY.1030.000012
S763L763LTtaCta22AY.1210.000271
S763L763StTatCa22AY.200.000078
S763L763LttAttG22AY.250.000012
S763L763LttAttG22AY.340.000194
S763L763delTTA---22AY.34.10.00102
S763L763VTtAGtT12AY.430.000004
S763L763VTtaGta12AY.430.000004
S763L763FttAttT22AY.440.000012
S763L763LTtaCta22AY.450.000243
S763L763FttAttT22AY.840.000875
S763L763LTtaCta22AY.930.000546
S763L763FttAttT22B.10.000018
S763L763VTtaGta22B.1.10.000036
S763L763delTTA---22B.1.1.3150.016949
S763L763delTTA---22B.1.20.000018
S763L763LttAttG22B.1.2580.000133
S763L763LttAttG22B.1.4270.000101
S763L763delTTA---22B.1.5250.000226
S763L763LTtaCta22B.1.5610.000794
S763L763delTTA---22B.1.617.20.000008
S763L763delTTA---22C.370.000232
S763L763delTTA---22P.1.70.000639
S763L763delTTA---11A0.000387
S763L763KTTaAAa11All0
S763L763QTTaCAa11All0
S763L763ETTaGAa11All0
S763L763DTTAGAT11All0
S763L763YtTAtAT11All0
S763L763LttAttG11AU.30.00211
S763L763delTTA---11AY.100.00053
S763L763delTTA---11AY.1000.000046
S763L763del1ttAtt-11AY.1030.000006
S763L763StTatCa11AY.1030.000006
S763L763FttAttT11AY.1030.000006
S763L763delTTA---11AY.1030.000006
S763L763LttAttG11AY.1180.000063
S763L763delTTA---11AY.1200.000037
S763L763LTtaCta11AY.1200.000037
S763L763LTtaCta11AY.140.000088
S763L763LTtaCta11AY.200.000039
S763L763delTTA---11AY.230.00007
S763L763FttAttT11AY.240.000431
S763L763delTTA---11AY.240.000431
S763L763LTtaCta11AY.270.000065
S763L763StTatCa11AY.290.000016
S763L763ITtaAta11AY.290.000016
S763L763delTTA---11AY.290.000016
S763L763delTTA---11AY.30.00001
S763L763VTtaGta11AY.330.000067
S763L763del1TtANt-11AY.380.000499
S763L763LttAttG11AY.380.000499
S763L763LTtaCta11AY.39.10.00004
S763L763StTatCa11AY.4.20.000022
S763L763LTtaCta11AY.4.2.10.000149
S763L763LTtaCta11AY.420.00004
S763L763delTTA---11AY.420.00004
S763L763XtTatAa11AY.420.00004
S763L763QTTaCAa11AY.430.000004
S763L763ETTaGAa11AY.430.000004
S763L763XtTatAa11AY.430.000004
S763L763DTTAGAT11AY.430.000004
S763L763FttAttT11AY.430.000004
S763L763YtTAtAT11AY.430.000004
S763L763KTTaAAa11AY.430.000004
S763L763delTTA---11AY.450.000122
S763L763LttAttG11AY.46.20.000635
S763L763LTtaCta11AY.470.000031
S763L763StTatCa11AY.5.30.000337
S763L763delTTA---11AY.540.000095
S763L763LTtaCta11AY.610.000105
S763L763delTTA---11AY.680.000274
S763L763delTTA---11AY.75.10.00018
S763L763del1ttAtt-11AY.830.001724
S763L763LttAttG11AY.90.000068
S763L763LTtaCta11AY.9.10.000084
S763L763XtTatAa11AY.9.20.000037
S763L763delTTA---11AY.910.00073
S763L763LTtaCta11AY.98.10.000048
S763L763XtTatAa11B.10.000009
S763L763StTatCa11B.10.000009
S763L763delTTA---11B.1.10.000018
S763L763LTtaCta11B.1.1.1760.000439
S763L763delTTA---11B.1.1.2360.006897
S763L763StTatCa11B.1.1.2400.004695
S763L763LTtaCta11B.1.1.2630.001558
S763L763delTTA---11B.1.1.3720.000689
S763L763delTTA---11B.1.1.4090.002833
S763L763LTtaCta11B.1.1.4160.000905
S763L763LTtaCta11B.1.1.440.00241
S763L763FttAttT11B.1.1.5190.00004
S763L763LTtaCta11B.1.1.5190.00004
S763L763TTTaACa11B.1.1.70.000001
S763L763LTtaCta11B.1.1.830.00271
S763L763delTTA---11B.1.1400.018868
S763L763XtTatAa11B.1.1600.000031
S763L763FttAttT11B.1.160.270.015152
S763L763delTTA---11B.1.1770.000013
S763L763delTTA---11B.1.177.620.001192
S763L763LttAttG11B.1.177.650.000665
S763L763LttAttG11B.1.177.850.005435
S763L763del1ttAtt-11B.1.20.000009
S763L763VTtaGta11B.1.20.000009
S763L763delTTA---11B.1.2340.000132
S763L763XtTatAa11B.1.2360.002053
S763L763StTatCa11B.1.258.110.000396
S763L763LTtaCta11B.1.3110.000275
S763L763VTtaGta11B.1.3510.00003
S763L763ITtaAta11B.1.351.20.000303
S763L763LTtaCta11B.1.360.000146
S763L763FttAttC11B.1.36.180.00042
S763L763LttAttG11B.1.3910.001127
S763L763LttAttG11B.1.4050.012346
S763L763LttAttG11B.1.4990.00105
S763L763ATTaGCa11B.1.5240.001406
S763L763LTtaCta11B.1.5250.000113
S763L763delTTA---11B.1.5610.000397
S763L763StTatCa11B.1.5960.000087
S763L763LTtaCta11B.1.5960.000087
S763L763XtTatAa11B.1.6090.000479
S763L763ITtaAta11B.1.617.20.000004
S763L763VTtaGta11B.1.617.20.000004
S763L763FttAttC11B.1.617.20.000004
S763L763TTTaACa11B.1.617.20.000004
S763L763delTTA---11B.1.6200.000946
S763L763delTTA---11B.1.6380.052632
S763L763FttAttT11B.3.10.001658
S763L763LTtaCta11B.560.028571
S763L763LTtaCta11C.80.004464
S763L763StTatCa11D.20.000075
S763L763FttAttT11D.20.000075
S763L763LTtaCta11D.20.000075
S763L763del1TTA-NN11P.10.000016
S763L763LTtaCta11P.10.000016
S763L763XtTatAa11P.10.000016
S763L763VTtaGta11P.1.100.000269
S763L763delTTA---11P.1.130.000898
S763L763FttAttT11P.1.140.000048
S763L763LTtaCta11Q.40.000455
S763L763FttAttT11Q.70.001111
S763L763delTTA---11Q.80.000165
S763L763LTtaCta11S.10.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.