CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 76 | T76I | nonsyn | aCt | aTt | 12332 | 12330 | 0.999838 | 21788-21790 | |
S | 76 | T76I | nonsyn | aCT | aTC | 12332 | 2 | 0.00016218 | 21788-21790 | |
S | 76 | T76N | nonsyn | aCt | aAt | 634 | 634 | 1 | 21788-21790 | |
S | 76 | T76del | del | ACT | --- | 529 | 529 | 1 | 21788-21790 | |
S | 76 | T76T | syn | acT | acC | 304 | 271 | 0.891447 | 21788-21790 | |
S | 76 | T76T | syn | acT | acG | 304 | 20 | 0.0657895 | 21788-21790 | |
S | 76 | T76T | syn | acT | acA | 304 | 13 | 0.0427632 | 21788-21790 | |
S | 76 | T76S | nonsyn | aCt | aGt | 209 | 187 | 0.894737 | 21788-21790 | |
S | 76 | T76S | nonsyn | Act | Tct | 209 | 22 | 0.105263 | 21788-21790 | |
S | 76 | T76A | nonsyn | Act | Gct | 180 | 180 | 1 | 21788-21790 | |
S | 76 | T76del2 | del | ACt | --t | 34 | 31 | 0.911765 | 21788-21790 | |
S | 76 | T76del2 | del | aCT | a-- | 34 | 3 | 0.0882353 | 21788-21790 | |
S | 76 | T76P | nonsyn | Act | Cct | 10 | 8 | 0.8 | 21788-21790 | |
S | 76 | T76P | nonsyn | AcT | CcA | 10 | 1 | 0.1 | 21788-21790 | |
S | 76 | T76P | nonsyn | AcT | CcC | 10 | 1 | 0.1 | 21788-21790 | |
S | 76 | T76del1 | del | Act | -ct | 6 | 3 | 0.5 | 21788-21790 | |
S | 76 | T76del1 | del | aCt | a-t | 6 | 2 | 0.333333 | 21788-21790 | |
S | 76 | T76del1 | del | AcT | -cN | 6 | 1 | 0.166667 | 21788-21790 | |
S | 76 | T76R | nonsyn | aCT | aGG | 5 | 3 | 0.6 | 21788-21790 | |
S | 76 | T76K | nonsyn | aCT | aAG | 5 | 3 | 0.6 | 21788-21790 | |
S | 76 | T76G | nonsyn | ACT | GGA | 5 | 2 | 0.4 | 21788-21790 | |
S | 76 | T76R | nonsyn | aCT | aGA | 5 | 2 | 0.4 | 21788-21790 | |
S | 76 | T76K | nonsyn | aCT | aAA | 5 | 2 | 0.4 | 21788-21790 | |
S | 76 | T76G | nonsyn | ACT | GGG | 5 | 2 | 0.4 | 21788-21790 | |
S | 76 | T76G | nonsyn | ACt | GGt | 5 | 1 | 0.2 | 21788-21790 | |
S | 76 | T76V | nonsyn | ACt | GTt | 4 | 4 | 1 | 21788-21790 | |
S | 76 | T76E | nonsyn | ACT | GAG | 4 | 2 | 0.5 | 21788-21790 | |
S | 76 | T76E | nonsyn | ACT | GAA | 4 | 2 | 0.5 | 21788-21790 | |
S | 76 | T76D | nonsyn | ACt | GAt | 1 | 1 | 1 | 21788-21790 | |
S | 76 | T76Y | nonsyn | ACt | TAt | 1 | 1 | 1 | 21788-21790 | |
S | 76 | T76L | nonsyn | ACT | CTG | 1 | 1 | 1 | 21788-21790 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 76 | T76I | aCt | aTt | 12330 | 12332 | All | 0.002358 |
S | 76 | T76I | aCT | aTC | 2 | 12332 | All | 0 |
S | 76 | T76I | aCt | aTt | 8426 | 8426 | C.37 | 0.977948 |
S | 76 | T76I | aCt | aTt | 1414 | 1414 | B.1.1.7 | 0.001266 |
S | 76 | T76N | aCt | aAt | 634 | 634 | All | 0.000121 |
S | 76 | T76N | aCt | aAt | 589 | 589 | B.1.1.7 | 0.000527 |
S | 76 | T76del | ACT | --- | 529 | 529 | All | 0.000101 |
S | 76 | T76I | aCt | aTt | 379 | 379 | C.37.1 | 0.992147 |
S | 76 | T76T | acT | acC | 271 | 304 | All | 0.000052 |
S | 76 | T76T | acT | acG | 20 | 304 | All | 0.000004 |
S | 76 | T76T | acT | acA | 13 | 304 | All | 0.000002 |
S | 76 | T76S | aCt | aGt | 187 | 209 | All | 0.000036 |
S | 76 | T76S | Act | Tct | 22 | 209 | All | 0.000004 |
S | 76 | T76T | acT | acC | 177 | 187 | B.1.1.7 | 0.000158 |
S | 76 | T76T | acT | acG | 9 | 187 | B.1.1.7 | 0.000008 |
S | 76 | T76T | acT | acA | 1 | 187 | B.1.1.7 | 0.000001 |
S | 76 | T76A | Act | Gct | 180 | 180 | All | 0.000034 |
S | 76 | T76I | aCt | aTt | 165 | 165 | AY.4 | 0.000257 |
S | 76 | T76I | aCt | aTt | 129 | 129 | B.1.2 | 0.001136 |
S | 76 | T76I | aCt | aTt | 113 | 113 | P.1 | 0.00178 |
S | 76 | T76A | Act | Gct | 85 | 85 | B.1.1.7 | 0.000076 |
S | 76 | T76S | aCt | aGt | 85 | 85 | B.1.617.2 | 0.00032 |
S | 76 | T76del | ACT | --- | 84 | 84 | AY.43 | 0.000372 |
S | 76 | T76I | aCt | aTt | 80 | 80 | B.1 | 0.000733 |
S | 76 | T76del | ACT | --- | 78 | 78 | B.1.617.2 | 0.000294 |
S | 76 | T76I | aCt | aTt | 74 | 74 | AY.25 | 0.000445 |
S | 76 | T76I | aCt | aTt | 74 | 74 | B.1.1 | 0.001342 |
S | 76 | T76I | aCt | aTt | 65 | 65 | B.1.1.284 | 0.006981 |
S | 76 | T76I | aCt | aTt | 65 | 65 | B.1.177 | 0.000856 |
S | 76 | T76I | aCt | aTt | 63 | 63 | B.1.1.316 | 0.058279 |
S | 76 | T76I | aCt | aTt | 59 | 60 | B.1.617.2 | 0.000222 |
S | 76 | T76I | aCT | aTC | 1 | 60 | B.1.617.2 | 0.000004 |
S | 76 | T76I | aCt | aTt | 55 | 55 | P.1.15 | 0.012779 |
S | 76 | T76I | aCt | aTt | 52 | 52 | B.1.564.1 | 0.082019 |
S | 76 | T76I | aCt | aTt | 51 | 51 | AY.43 | 0.000226 |
S | 76 | T76I | aCt | aTt | 51 | 51 | B.1.596 | 0.004444 |
S | 76 | T76del | ACT | --- | 50 | 50 | B.1.1.7 | 0.000045 |
S | 76 | T76I | aCt | aTt | 46 | 46 | B.1.243 | 0.003201 |
S | 76 | T76I | aCt | aTt | 39 | 39 | AY.102 | 0.001034 |
S | 76 | T76I | aCt | aTt | 39 | 39 | B.1.177.81 | 0.007384 |
S | 76 | T76del2 | ACt | --t | 31 | 34 | All | 0.000006 |
S | 76 | T76del2 | aCT | a-- | 3 | 34 | All | 0.000001 |
S | 76 | T76I | aCt | aTt | 29 | 30 | AY.103 | 0.00018 |
S | 76 | T76I | aCT | aTC | 1 | 30 | AY.103 | 0.000006 |
S | 76 | T76del2 | ACt | --t | 29 | 29 | C.37 | 0.003366 |
S | 76 | T76del | ACT | --- | 28 | 28 | B.1 | 0.000256 |
S | 76 | T76del | ACT | --- | 27 | 27 | AY.44 | 0.000164 |
S | 76 | T76del | ACT | --- | 27 | 27 | AY.9 | 0.001825 |
S | 76 | T76I | aCt | aTt | 26 | 26 | AY.3 | 0.000259 |
S | 76 | T76S | aCt | aGt | 25 | 25 | AY.102 | 0.000663 |
S | 76 | T76I | aCt | aTt | 24 | 24 | AY.100 | 0.001104 |
S | 76 | T76S | aCt | aGt | 21 | 24 | B.1.1.7 | 0.000019 |
S | 76 | T76S | Act | Tct | 3 | 24 | B.1.1.7 | 0.000003 |
S | 76 | T76I | aCt | aTt | 22 | 22 | Q.1 | 0.002779 |
S | 76 | T76del | ACT | --- | 21 | 21 | AY.25 | 0.000126 |
S | 76 | T76I | aCt | aTt | 21 | 21 | B.1.429 | 0.000494 |
S | 76 | T76del | ACT | --- | 20 | 20 | AY.4 | 0.000031 |
S | 76 | T76I | aCt | aTt | 20 | 20 | B.1.1.372 | 0.013774 |
S | 76 | T76I | aCt | aTt | 20 | 20 | B.1.621 | 0.00177 |
S | 76 | T76A | Act | Gct | 18 | 18 | AY.102 | 0.000477 |
S | 76 | T76I | aCt | aTt | 18 | 18 | AY.44 | 0.00011 |
S | 76 | T76A | Act | Gct | 18 | 18 | B.1.617.2 | 0.000068 |
S | 76 | T76I | aCt | aTt | 17 | 17 | AY.39 | 0.00042 |
S | 76 | T76I | aCt | aTt | 17 | 17 | AY.39.2 | 0.026194 |
S | 76 | T76I | aCt | aTt | 17 | 17 | B.1.633 | 0.708333 |
S | 76 | T76del | ACT | --- | 16 | 16 | AY.102 | 0.000424 |
S | 76 | T76I | aCt | aTt | 16 | 16 | B.1.134 | 0.087432 |
S | 76 | T76I | aCt | aTt | 16 | 16 | B.1.177.18 | 0.018561 |
S | 76 | T76del | ACT | --- | 15 | 15 | B.1.1 | 0.000272 |
S | 76 | T76T | acT | acC | 10 | 15 | B.1.617.2 | 0.000038 |
S | 76 | T76T | acT | acG | 3 | 15 | B.1.617.2 | 0.000011 |
S | 76 | T76T | acT | acA | 2 | 15 | B.1.617.2 | 0.000008 |
S | 76 | T76I | aCt | aTt | 14 | 14 | AY.29 | 0.000221 |
S | 76 | T76I | aCt | aTt | 14 | 14 | P.1.10 | 0.003773 |
S | 76 | T76I | aCt | aTt | 14 | 14 | P.1.14 | 0.000669 |
S | 76 | T76I | aCt | aTt | 13 | 13 | AY.20 | 0.000505 |
S | 76 | T76I | aCt | aTt | 13 | 13 | AY.26 | 0.000368 |
S | 76 | T76I | aCt | aTt | 13 | 13 | B | 0.001662 |
S | 76 | T76I | aCt | aTt | 13 | 13 | B.1.221 | 0.000923 |
S | 76 | T76del | ACT | --- | 12 | 12 | AY.34.1 | 0.006119 |
S | 76 | T76N | aCt | aAt | 12 | 12 | AY.4 | 0.000019 |
S | 76 | T76S | aCt | aGt | 12 | 12 | AY.91 | 0.008766 |
S | 76 | T76I | aCt | aTt | 12 | 12 | B.1.509 | 0.01039 |
S | 76 | T76A | Act | Gct | 11 | 11 | AY.4 | 0.000017 |
S | 76 | T76I | aCt | aTt | 11 | 11 | AY.47 | 0.000342 |
S | 76 | T76I | aCt | aTt | 11 | 11 | AY.98.1 | 0.000533 |
S | 76 | T76P | Act | Cct | 8 | 10 | All | 0.000002 |
S | 76 | T76P | AcT | CcC | 1 | 10 | All | 0 |
S | 76 | T76P | AcT | CcA | 1 | 10 | All | 0 |
S | 76 | T76T | acT | acC | 8 | 9 | AY.4 | 0.000012 |
S | 76 | T76T | acT | acA | 1 | 9 | AY.4 | 0.000002 |
S | 76 | T76T | acT | acC | 8 | 9 | AY.43 | 0.000035 |
S | 76 | T76T | acT | acA | 1 | 9 | AY.43 | 0.000004 |
S | 76 | T76I | aCt | aTt | 9 | 9 | B.1.1.157 | 0.008219 |
S | 76 | T76I | aCt | aTt | 9 | 9 | R.1 | 0.00081 |
S | 76 | T76A | Act | Gct | 8 | 8 | AY.26 | 0.000226 |
S | 76 | T76I | aCt | aTt | 8 | 8 | B.1.177.62 | 0.009535 |
S | 76 | T76I | aCt | aTt | 8 | 8 | B.1.351.2 | 0.002421 |
S | 76 | T76S | aCt | aGt | 8 | 8 | B.1.404 | 0.010417 |
S | 76 | T76T | acT | acC | 8 | 8 | P.1 | 0.000126 |
S | 76 | T76I | aCt | aTt | 8 | 8 | Q.8 | 0.001319 |
S | 76 | T76I | aCt | aTt | 7 | 7 | AY.4.2 | 0.000152 |
S | 76 | T76I | aCt | aTt | 7 | 7 | AY.71 | 0.003325 |
S | 76 | T76I | aCt | aTt | 7 | 7 | B.1.160 | 0.000218 |
S | 76 | T76I | aCt | aTt | 7 | 7 | B.1.351 | 0.000208 |
S | 76 | T76I | aCt | aTt | 7 | 7 | B.1.564 | 0.002981 |
S | 76 | T76I | aCt | aTt | 7 | 7 | B.1.568 | 0.007778 |
S | 76 | T76I | aCt | aTt | 7 | 7 | B.1.637 | 0.000512 |
S | 76 | T76I | aCt | aTt | 6 | 6 | A | 0.002322 |
S | 76 | T76I | aCt | aTt | 6 | 6 | A.2.5 | 0.002994 |
S | 76 | T76del1 | Act | -ct | 3 | 6 | All | 0.000001 |
S | 76 | T76del1 | aCt | a-t | 2 | 6 | All | 0 |
S | 76 | T76del1 | AcT | -cN | 1 | 6 | All | 0 |
S | 76 | T76I | aCt | aTt | 6 | 6 | AY.121 | 0.000812 |
S | 76 | T76del | ACT | --- | 6 | 6 | AY.3 | 0.00006 |
S | 76 | T76del | ACT | --- | 6 | 6 | AY.33 | 0.000401 |
S | 76 | T76S | Act | Tct | 6 | 6 | B.1.1.121 | 0.014563 |
S | 76 | T76I | aCt | aTt | 6 | 6 | B.1.1.214 | 0.000333 |
S | 76 | T76I | aCt | aTt | 6 | 6 | B.1.1.519 | 0.000238 |
S | 76 | T76del | ACT | --- | 6 | 6 | B.1.177 | 0.000079 |
S | 76 | T76T | acT | acC | 6 | 6 | B.1.2 | 0.000053 |
S | 76 | T76I | aCt | aTt | 6 | 6 | B.1.369 | 0.001711 |
S | 76 | T76I | aCt | aTt | 6 | 6 | B.1.432 | 0.067416 |
S | 76 | T76I | aCt | aTt | 6 | 6 | B.1.526 | 0.000141 |
S | 76 | T76S | aCt | aGt | 6 | 6 | B.1.588 | 0.00546 |
S | 76 | T76R | aCT | aGG | 3 | 5 | All | 0.000001 |
S | 76 | T76K | aCT | aAG | 3 | 5 | All | 0.000001 |
S | 76 | T76K | aCT | aAA | 2 | 5 | All | 0 |
S | 76 | T76R | aCT | aGA | 2 | 5 | All | 0 |
S | 76 | T76G | ACT | GGA | 2 | 5 | All | 0 |
S | 76 | T76G | ACT | GGG | 2 | 5 | All | 0 |
S | 76 | T76G | ACt | GGt | 1 | 5 | All | 0 |
S | 76 | T76T | acT | acC | 5 | 5 | AY.100 | 0.00023 |
S | 76 | T76del | ACT | --- | 5 | 5 | AY.101 | 0.002452 |
S | 76 | T76I | aCt | aTt | 5 | 5 | AY.119 | 0.000177 |
S | 76 | T76del | ACT | --- | 5 | 5 | AY.4.5 | 0.000537 |
S | 76 | T76I | aCt | aTt | 5 | 5 | AY.42 | 0.000201 |
S | 76 | T76T | acT | acC | 5 | 5 | AY.44 | 0.00003 |
S | 76 | T76del | ACT | --- | 5 | 5 | AY.46 | 0.00052 |
S | 76 | T76I | aCt | aTt | 5 | 5 | AY.5 | 0.000103 |
S | 76 | T76I | aCt | aTt | 5 | 5 | AY.75 | 0.00028 |
S | 76 | T76I | aCt | aTt | 5 | 5 | B.1.1.311 | 0.001791 |
S | 76 | T76T | acT | acC | 5 | 5 | B.1.177.81 | 0.000947 |
S | 76 | T76I | aCt | aTt | 5 | 5 | B.1.595 | 0.001305 |
S | 76 | T76del | ACT | --- | 5 | 5 | B.1.637 | 0.000365 |
S | 76 | T76K | aCT | aAA | 2 | 4 | 0.111111 | |
S | 76 | T76E | ACT | GAA | 2 | 4 | 0.111111 | |
S | 76 | T76R | aCT | aGA | 2 | 4 | 0.111111 | |
S | 76 | T76R | aCT | aGG | 2 | 4 | 0.111111 | |
S | 76 | T76E | ACT | GAG | 2 | 4 | 0.111111 | |
S | 76 | T76G | ACT | GGA | 2 | 4 | 0.111111 | |
S | 76 | T76G | ACT | GGG | 2 | 4 | 0.111111 | |
S | 76 | T76K | aCT | aAG | 2 | 4 | 0.111111 | |
S | 76 | T76I | aCt | aTt | 4 | 4 | A.2 | 0.002647 |
S | 76 | T76V | ACt | GTt | 4 | 4 | All | 0.000001 |
S | 76 | T76E | ACT | GAG | 2 | 4 | All | 0 |
S | 76 | T76E | ACT | GAA | 2 | 4 | All | 0 |
S | 76 | T76del | ACT | --- | 4 | 4 | AY.103 | 0.000025 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.117 | 0.000338 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.118 | 0.000251 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.120 | 0.000149 |
S | 76 | T76del | ACT | --- | 4 | 4 | AY.121 | 0.000541 |
S | 76 | T76del | ACT | --- | 4 | 4 | AY.26 | 0.000113 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.36 | 0.000593 |
S | 76 | T76del | ACT | --- | 4 | 4 | AY.5 | 0.000083 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.5.4 | 0.001107 |
S | 76 | T76T | acT | acC | 3 | 4 | AY.59 | 0.001589 |
S | 76 | T76T | acT | acA | 1 | 4 | AY.59 | 0.00053 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.6 | 0.000165 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.70 | 0.000834 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.79 | 0.004843 |
S | 76 | T76I | aCt | aTt | 4 | 4 | AY.9 | 0.00027 |
S | 76 | T76del | ACT | --- | 4 | 4 | B | 0.000511 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.1.1 | 0.001307 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.1.170 | 0.004988 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.1.28 | 0.001245 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.1.286 | 0.011594 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.1.301 | 0.004717 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.1.39 | 0.002039 |
S | 76 | T76P | Act | Cct | 3 | 4 | B.1.1.7 | 0.000003 |
S | 76 | T76P | AcT | CcC | 1 | 4 | B.1.1.7 | 0.000001 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.311 | 0.001098 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.36.29 | 0.002069 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.609 | 0.001918 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.1.612 | 0.01061 |
S | 76 | T76S | aCt | aGt | 4 | 4 | B.1.621 | 0.000354 |
S | 76 | T76I | aCt | aTt | 4 | 4 | B.23 | 0.011696 |
S | 76 | T76I | aCt | aTt | 3 | 3 | A.1 | 0.000846 |
S | 76 | T76T | acT | acC | 1 | 3 | AY.119 | 0.000035 |
S | 76 | T76T | acT | acA | 1 | 3 | AY.119 | 0.000035 |
S | 76 | T76T | acT | acG | 1 | 3 | AY.119 | 0.000035 |
S | 76 | T76del | ACT | --- | 3 | 3 | AY.20 | 0.000117 |
S | 76 | T76N | aCt | aAt | 3 | 3 | AY.23 | 0.000209 |
S | 76 | T76del | ACT | --- | 3 | 3 | AY.39 | 0.000074 |
S | 76 | T76S | aCt | aGt | 2 | 3 | AY.4 | 0.000003 |
S | 76 | T76S | Act | Tct | 1 | 3 | AY.4 | 0.000002 |
S | 76 | T76S | aCt | aGt | 2 | 3 | AY.43 | 0.000009 |
S | 76 | T76S | Act | Tct | 1 | 3 | AY.43 | 0.000004 |
S | 76 | T76A | Act | Gct | 3 | 3 | AY.44 | 0.000018 |
S | 76 | T76del | ACT | --- | 3 | 3 | AY.47 | 0.000093 |
S | 76 | T76I | aCt | aTt | 3 | 3 | AY.53 | 0.000863 |
S | 76 | T76del | ACT | --- | 3 | 3 | AY.54 | 0.000286 |
S | 76 | T76del | ACT | --- | 3 | 3 | AY.61 | 0.000314 |
S | 76 | T76S | aCt | aGt | 3 | 3 | AY.75.1 | 0.000541 |
S | 76 | T76del | ACT | --- | 3 | 3 | AY.85 | 0.001282 |
S | 76 | T76del | ACT | --- | 3 | 3 | AY.9.2 | 0.00011 |
S | 76 | T76T | acT | acC | 3 | 3 | B.1 | 0.000027 |
S | 76 | T76T | acT | acC | 3 | 3 | B.1.1 | 0.000054 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.1.222 | 0.000612 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.1.269 | 0.00406 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.1.50 | 0.002037 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.173 | 0.078947 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.218 | 0.015464 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.258 | 0.0002 |
S | 76 | T76del | ACT | --- | 3 | 3 | B.1.429 | 0.000071 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.497 | 0.000944 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.575 | 0.00091 |
S | 76 | T76N | aCt | aAt | 3 | 3 | B.1.617.2 | 0.000011 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.1.623 | 0.001609 |
S | 76 | T76I | aCt | aTt | 3 | 3 | B.40 | 0.001093 |
S | 76 | T76I | aCt | aTt | 3 | 3 | C.35 | 0.002322 |
S | 76 | T76I | aCt | aTt | 3 | 3 | C.39 | 0.056604 |
S | 76 | T76I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
S | 76 | T76I | aCt | aTt | 3 | 3 | P.1.1 | 0.000953 |
S | 76 | T76I | aCt | aTt | 3 | 3 | P.1.12 | 0.001452 |
S | 76 | T76I | aCt | aTt | 3 | 3 | P.1.7 | 0.000958 |
S | 76 | T76I | aCt | aTt | 3 | 3 | P.2 | 0.00056 |
S | 76 | T76del1 | aCt | a-t | 2 | 2 | 0.111111 | |
S | 76 | T76del | ACT | --- | 2 | 2 | 0.111111 | |
S | 76 | T76A | Act | Gct | 2 | 2 | 0.111111 | |
S | 76 | T76del | ACT | --- | 2 | 2 | A | 0.000774 |
S | 76 | T76I | aCt | aTt | 2 | 2 | A.2.2 | 0.003378 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AU.3 | 0.004219 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.101 | 0.000981 |
S | 76 | T76V | ACt | GTt | 2 | 2 | AY.102 | 0.000053 |
S | 76 | T76A | Act | Gct | 2 | 2 | AY.103 | 0.000012 |
S | 76 | T76del | ACT | --- | 2 | 2 | AY.108 | 0.002205 |
S | 76 | T76del | ACT | --- | 2 | 2 | AY.118 | 0.000125 |
S | 76 | T76A | Act | Gct | 2 | 2 | AY.118 | 0.000125 |
S | 76 | T76T | acT | acC | 2 | 2 | AY.120 | 0.000074 |
S | 76 | T76T | acT | acA | 2 | 2 | AY.20 | 0.000078 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.23 | 0.000139 |
S | 76 | T76T | acT | acG | 1 | 2 | AY.25 | 0.000006 |
S | 76 | T76T | acT | acC | 1 | 2 | AY.25 | 0.000006 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.33 | 0.000134 |
S | 76 | T76P | Act | Cct | 1 | 2 | AY.34 | 0.000097 |
S | 76 | T76P | AcT | CcA | 1 | 2 | AY.34 | 0.000097 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.39.1 | 0.000079 |
S | 76 | T76A | Act | Gct | 2 | 2 | AY.4.5 | 0.000215 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
S | 76 | T76del | ACT | --- | 2 | 2 | AY.42 | 0.00008 |
S | 76 | T76N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
S | 76 | T76T | acT | acC | 2 | 2 | AY.5 | 0.000041 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.58 | 0.001815 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.59 | 0.001059 |
S | 76 | T76del | ACT | --- | 2 | 2 | AY.7.2 | 0.001119 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.74 | 0.000231 |
S | 76 | T76S | aCt | aGt | 2 | 2 | AY.75 | 0.000112 |
S | 76 | T76del | ACT | --- | 2 | 2 | AY.75 | 0.000112 |
S | 76 | T76del | ACT | --- | 2 | 2 | AY.75.1 | 0.000361 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.9.1 | 0.000167 |
S | 76 | T76I | aCt | aTt | 2 | 2 | AY.9.2 | 0.000073 |
S | 76 | T76T | acT | acC | 2 | 2 | AY.98 | 0.000158 |
S | 76 | T76del | ACT | --- | 2 | 2 | AY.98.1 | 0.000097 |
S | 76 | T76N | aCt | aAt | 2 | 2 | B.1 | 0.000018 |
S | 76 | T76S | Act | Tct | 2 | 2 | B.1 | 0.000018 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.207 | 0.002364 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.317 | 0.000823 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.375 | 0.02381 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.380 | 0.019608 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.404 | 0.031746 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.466 | 0.017391 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.70 | 0.000682 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.98 | 0.037037 |
S | 76 | T76T | acT | acC | 2 | 2 | B.1.160 | 0.000062 |
S | 76 | T76N | aCt | aAt | 2 | 2 | B.1.177 | 0.000026 |
S | 76 | T76T | acT | acC | 2 | 2 | B.1.177 | 0.000026 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.10 | 0.001756 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.21 | 0.000153 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.40 | 0.010309 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.42 | 0.001789 |
S | 76 | T76del | ACT | --- | 2 | 2 | B.1.177.56 | 0.001335 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.7 | 0.00033 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.75 | 0.002081 |
S | 76 | T76del | ACT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 76 | T76A | Act | Gct | 2 | 2 | B.1.2 | 0.000018 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.210 | 0.004264 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.236 | 0.004107 |
S | 76 | T76T | acT | acC | 2 | 2 | B.1.258 | 0.000133 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.36 | 0.000292 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.36.27 | 0.001527 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.400 | 0.000858 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.411 | 0.007407 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.416 | 0.002538 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.416.1 | 0.003125 |
S | 76 | T76A | Act | Gct | 2 | 2 | B.1.429 | 0.000047 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.438.1 | 0.000215 |
S | 76 | T76del | ACT | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.617.1 | 0.000258 |
S | 76 | T76V | ACt | GTt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.618 | 0.008065 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.619.1 | 0.001283 |
S | 76 | T76T | acT | acC | 2 | 2 | B.1.621 | 0.000177 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.1.91 | 0.004149 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.4 | 0.004415 |
S | 76 | T76I | aCt | aTt | 2 | 2 | B.6.6 | 0.001778 |
S | 76 | T76I | aCt | aTt | 2 | 2 | C.1 | 0.004785 |
S | 76 | T76I | aCt | aTt | 2 | 2 | C.14 | 0.008658 |
S | 76 | T76I | aCt | aTt | 2 | 2 | C.16 | 0.002121 |
S | 76 | T76I | aCt | aTt | 2 | 2 | C.8 | 0.008929 |
S | 76 | T76N | aCt | aAt | 2 | 2 | P.1.14 | 0.000096 |
S | 76 | T76I | aCt | aTt | 2 | 2 | P.1.4 | 0.001953 |
S | 76 | T76A | Act | Gct | 2 | 2 | Q.4 | 0.00091 |
S | 76 | T76A | Act | Gct | 2 | 2 | R.1 | 0.00018 |
S | 76 | T76del | ACT | --- | 2 | 2 | R.1 | 0.00018 |
S | 76 | T76S | Act | Tct | 1 | 1 | 0.055556 | |
S | 76 | T76P | Act | Cct | 1 | 1 | 0.055556 | |
S | 76 | T76A | Act | Gct | 1 | 1 | A | 0.000387 |
S | 76 | T76T | acT | acC | 1 | 1 | A.1 | 0.000282 |
S | 76 | T76S | aCt | aGt | 1 | 1 | A.2.4 | 0.003367 |
S | 76 | T76I | aCt | aTt | 1 | 1 | A.2.4 | 0.003367 |
S | 76 | T76T | acT | acG | 1 | 1 | A.2.4 | 0.003367 |
S | 76 | T76R | aCT | aGG | 1 | 1 | A.2.4 | 0.003367 |
S | 76 | T76T | acT | acA | 1 | 1 | A.2.5 | 0.000499 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AE.8 | 0.000489 |
S | 76 | T76D | ACt | GAt | 1 | 1 | All | 0 |
S | 76 | T76L | ACT | CTG | 1 | 1 | All | 0 |
S | 76 | T76Y | ACt | TAt | 1 | 1 | All | 0 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AP.1 | 0.001502 |
S | 76 | T76A | Act | Gct | 1 | 1 | AW.1 | 0.003049 |
S | 76 | T76S | Act | Tct | 1 | 1 | AY.10 | 0.00053 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.100 | 0.000046 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.100 | 0.000046 |
S | 76 | T76K | aCT | aAG | 1 | 1 | AY.102 | 0.000027 |
S | 76 | T76T | acT | acC | 1 | 1 | AY.102 | 0.000027 |
S | 76 | T76del1 | Act | -ct | 1 | 1 | AY.102 | 0.000027 |
S | 76 | T76T | acT | acC | 1 | 1 | AY.103 | 0.000006 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.105 | 0.000643 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.110 | 0.000113 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.111 | 0.000183 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.113 | 0.000142 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.114 | 0.000231 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.116 | 0.000287 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.117 | 0.000085 |
S | 76 | T76S | Act | Tct | 1 | 1 | AY.118 | 0.000063 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.12 | 0.000316 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.16.1 | 0.00047 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.19 | 0.00114 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.23 | 0.00007 |
S | 76 | T76del2 | aCT | a-- | 1 | 1 | AY.25 | 0.000006 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
S | 76 | T76del1 | AcT | -cN | 1 | 1 | AY.25 | 0.000006 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.26 | 0.000028 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.28 | 0.00189 |
S | 76 | T76T | acT | acG | 1 | 1 | AY.3 | 0.00001 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.3.1 | 0.000085 |
S | 76 | T76T | acT | acC | 1 | 1 | AY.30 | 0.000396 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.30 | 0.000396 |
S | 76 | T76S | Act | Tct | 1 | 1 | AY.33 | 0.000067 |
S | 76 | T76T | acT | acA | 1 | 1 | AY.34 | 0.000097 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.34.1 | 0.00051 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.36 | 0.000148 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.39 | 0.000025 |
S | 76 | T76del2 | aCT | a-- | 1 | 1 | AY.39 | 0.000025 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.39.1 | 0.00004 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.4.2 | 0.000022 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.4.4 | 0.000409 |
S | 76 | T76del2 | ACt | --t | 1 | 1 | AY.4.5 | 0.000107 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.4.5 | 0.000107 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
S | 76 | T76P | Act | Cct | 1 | 1 | AY.43 | 0.000004 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
S | 76 | T76G | ACt | GGt | 1 | 1 | AY.43 | 0.000004 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.44 | 0.000006 |
S | 76 | T76D | ACt | GAt | 1 | 1 | AY.44 | 0.000006 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.45 | 0.000122 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.46 | 0.000104 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.46.4 | 0.000165 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.5 | 0.000021 |
S | 76 | T76L | ACT | CTG | 1 | 1 | AY.5.3 | 0.000337 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.5.3 | 0.000337 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.5.4 | 0.000277 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.5.4 | 0.000277 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.50 | 0.000799 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.51 | 0.000909 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.52 | 0.000814 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.55 | 0.000917 |
S | 76 | T76T | acT | acC | 1 | 1 | AY.55 | 0.000917 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.59 | 0.00053 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.62 | 0.000436 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.64 | 0.000595 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.68 | 0.000274 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.7.1 | 0.000113 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.70 | 0.000209 |
S | 76 | T76T | acT | acC | 1 | 1 | AY.70 | 0.000209 |
S | 76 | T76S | aCt | aGt | 1 | 1 | AY.71 | 0.000475 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.75 | 0.000056 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.75 | 0.000056 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.82 | 0.001357 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
S | 76 | T76A | Act | Gct | 1 | 1 | AY.85 | 0.000427 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
S | 76 | T76del2 | aCT | a-- | 1 | 1 | AY.85 | 0.000427 |
S | 76 | T76S | Act | Tct | 1 | 1 | AY.88 | 0.000884 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.9 | 0.000068 |
S | 76 | T76T | acT | acG | 1 | 1 | AY.9.1 | 0.000084 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
S | 76 | T76N | aCt | aAt | 1 | 1 | AY.92 | 0.000287 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.94 | 0.000443 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.95 | 0.000761 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.96 | 0.002075 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.97 | 0.001701 |
S | 76 | T76P | Act | Cct | 1 | 1 | AY.98.1 | 0.000048 |
S | 76 | T76del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 76 | T76S | Act | Tct | 1 | 1 | AY.99.1 | 0.001553 |
S | 76 | T76I | aCt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
S | 76 | T76del | ACT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 76 | T76T | acT | acC | 1 | 1 | B | 0.000128 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1 | 0.000009 |
S | 76 | T76N | aCt | aAt | 1 | 1 | B.1.1 | 0.000018 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1.1.1 | 0.000327 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.135 | 0.004695 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.138 | 0.006061 |
S | 76 | T76del1 | Act | -ct | 1 | 1 | B.1.1.148 | 0.008772 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.218 | 0.007692 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.265 | 0.003155 |
S | 76 | T76N | aCt | aAt | 1 | 1 | B.1.1.277 | 0.000759 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.294 | 0.001266 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.297 | 0.002237 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.362 | 0.005618 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.420 | 0.001006 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.448 | 0.002033 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.459 | 0.015385 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.48 | 0.002874 |
S | 76 | T76T | acT | acC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.523 | 0.001563 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.528 | 0.004808 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.59 | 0.006494 |
S | 76 | T76del2 | ACt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.160.20 | 0.008929 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
S | 76 | T76S | Act | Tct | 1 | 1 | B.1.177 | 0.000013 |
S | 76 | T76del1 | Act | -ct | 1 | 1 | B.1.177 | 0.000013 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1.177.10 | 0.000878 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.16 | 0.000664 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 76 | T76T | acT | acA | 1 | 1 | B.1.177.2 | 0.004545 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.50 | 0.004695 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
S | 76 | T76T | acT | acC | 1 | 1 | B.1.177.72 | 0.00339 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1.177.86 | 0.000183 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 76 | T76S | aCt | aGt | 1 | 1 | B.1.2 | 0.000009 |
S | 76 | T76S | Act | Tct | 1 | 1 | B.1.206 | 0.000816 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.214 | 0.003663 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.22 | 0.001318 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1.221 | 0.000071 |
S | 76 | T76T | acT | acC | 1 | 1 | B.1.237 | 0.004975 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1.243 | 0.00007 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.1.258 | 0.000067 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 76 | T76S | aCt | aGt | 1 | 1 | B.1.258.11 | 0.000396 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
S | 76 | T76S | aCt | aGt | 1 | 1 | B.1.351 | 0.00003 |
S | 76 | T76T | acT | acC | 1 | 1 | B.1.351 | 0.00003 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
S | 76 | T76T | acT | acA | 1 | 1 | B.1.36.19 | 0.009259 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.36.39 | 0.002217 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.361 | 0.001289 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.362 | 0.001541 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.375 | 0.00082 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.378 | 0.006849 |
S | 76 | T76T | acT | acG | 1 | 1 | B.1.380 | 0.006623 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.396 | 0.000706 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.397 | 0.004854 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.422 | 0.000812 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.423 | 0.010204 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.427 | 0.00005 |
S | 76 | T76T | acT | acC | 1 | 1 | B.1.427 | 0.00005 |
S | 76 | T76T | acT | acG | 1 | 1 | B.1.429 | 0.000024 |
S | 76 | T76P | Act | Cct | 1 | 1 | B.1.453 | 0.003236 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.462 | 0.007246 |
S | 76 | T76N | aCt | aAt | 1 | 1 | B.1.462 | 0.007246 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.466.1 | 0.007194 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.471 | 0.002732 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.480 | 0.002488 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
S | 76 | T76S | aCt | aGt | 1 | 1 | B.1.525 | 0.000113 |
S | 76 | T76T | acT | acC | 1 | 1 | B.1.525 | 0.000113 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.538 | 0.008065 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.558 | 0.004566 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.560 | 0.00463 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.576 | 0.000907 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.587 | 0.001898 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.588 | 0.00091 |
S | 76 | T76S | aCt | aGt | 1 | 1 | B.1.595 | 0.000261 |
S | 76 | T76T | acT | acG | 1 | 1 | B.1.596 | 0.000087 |
S | 76 | T76N | aCt | aAt | 1 | 1 | B.1.612 | 0.002653 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 76 | T76N | aCt | aAt | 1 | 1 | B.1.621 | 0.000089 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.627 | 0.00202 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.628 | 0.000352 |
S | 76 | T76N | aCt | aAt | 1 | 1 | B.1.8 | 0.001972 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.1.93 | 0.000934 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.28 | 0.003279 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.3.1 | 0.001658 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.45 | 0.003831 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.56 | 0.028571 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.58 | 0.010204 |
S | 76 | T76I | aCt | aTt | 1 | 1 | B.6 | 0.00091 |
S | 76 | T76A | Act | Gct | 1 | 1 | B.6.6 | 0.000889 |
S | 76 | T76del | ACT | --- | 1 | 1 | B.61 | 0.005747 |
S | 76 | T76I | aCt | aTt | 1 | 1 | C.11 | 0.010638 |
S | 76 | T76I | aCt | aTt | 1 | 1 | C.28 | 0.04 |
S | 76 | T76del | ACT | --- | 1 | 1 | C.35 | 0.000774 |
S | 76 | T76del | ACT | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 76 | T76Y | ACt | TAt | 1 | 1 | C.37 | 0.000116 |
S | 76 | T76T | acT | acC | 1 | 1 | D.2 | 0.000075 |
S | 76 | T76I | aCt | aTt | 1 | 1 | N.3 | 0.005814 |
S | 76 | T76S | aCt | aGt | 1 | 1 | P.1 | 0.000016 |
S | 76 | T76A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
S | 76 | T76N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
S | 76 | T76del | ACT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 76 | T76del | ACT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 76 | T76I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
S | 76 | T76I | aCt | aTt | 1 | 1 | P.1.9 | 0.004808 |
S | 76 | T76S | aCt | aGt | 1 | 1 | P.6 | 0.003145 |
S | 76 | T76del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
S | 76 | T76I | aCt | aTt | 1 | 1 | Q.3 | 0.000145 |
S | 76 | T76I | aCt | aTt | 1 | 1 | W.1 | 0.008696 |
S | 76 | T76I | aCt | aTt | 1 | 1 | W.3 | 0.005263 |
S | 76 | T76S | Act | Tct | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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