CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 747

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S747T747InonsynaCtaTt30883088123801-23803
S747T747TsynacTacA4093250.79462123801-23803
S747T747TsynacTacC409630.15403423801-23803
S747T747TsynacTacG409210.051344723801-23803
S747T747NnonsynaCtaAt3923890.99234723801-23803
S747T747NnonsynaCTaAC39230.0076530623801-23803
S747T747AnonsynActGct132132123801-23803
S747T747deldelACT---5050123801-23803
S747T747SnonsynaCtaGt21170.80952423801-23803
S747T747SnonsynActTct2140.19047623801-23803
S747T747PnonsynActCct1414123801-23803
S747T747del1delacTac-430.7523801-23803
S747T747del1delACT-NN410.2523801-23803
S747T747VnonsynACtGTt210.523801-23803
S747T747VnonsynACTGTC210.523801-23803
S747T747del2delACt--t11123801-23803

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S747T747IaCtaTt30883088All0.000591
S747T747IaCtaTt11341134B.1.1.70.001015
S747T747TacTacA325409All0.000062
S747T747TacTacC63409All0.000012
S747T747TacTacG21409All0.000004
S747T747NaCtaAt389392All0.000074
S747T747NaCTaAC3392All0.000001
S747T747IaCtaTt383383AY.40.000596
S747T747NaCtaAt343343B.1.1.70.000307
S747T747TacTacA274275B.1.4290.006447
S747T747TacTacG1275B.1.4290.000024
S747T747IaCtaTt239239AY.1030.001484
S747T747IaCtaTt140140B.1.20.001233
S747T747AActGct132132All0.000025
S747T747IaCtaTt122122B.1.617.20.000459
S747T747IaCtaTt9393B.1.2210.006606
S747T747IaCtaTt6161B.1.1.2220.012444
S747T747IaCtaTt5555B.1.5260.001293
S747T747IaCtaTt5252AY.430.00023
S747T747delACT---5050All0.00001
S747T747IaCtaTt4444AY.440.000268
S747T747IaCtaTt3737AY.140.003256
S747T747IaCtaTt3636AY.450.004381
S747T747AActGct3333B.1.1.3170.013586
S747T747IaCtaTt3333B.1.1.5190.00131
S747T747AActGct3131B.1.1.70.000028
S747T747IaCtaTt2929B.10.000266
S747T747IaCtaTt2929B.1.1.720.878788
S747T747IaCtaTt2626N.21
S747T747TacTacC1425AY.40.000022
S747T747TacTacA725AY.40.000011
S747T747TacTacG425AY.40.000006
S747T747IaCtaTt2525B.1.4290.000588
S747T747IaCtaTt2525B.1.5510.032258
S747T747TacTacA1023B.1.1.70.000009
S747T747TacTacG923B.1.1.70.000008
S747T747TacTacC423B.1.1.70.000004
S747T747SaCtaGt1721All0.000003
S747T747SActTct421All0.000001
S747T747IaCtaTt2121AY.1020.000557
S747T747IaCtaTt2121AY.70.004116
S747T747IaCtaTt2020B.1.10.000363
S747T747IaCtaTt1919B.1.1770.00025
S747T747IaCtaTt1818AY.740.002082
S747T747IaCtaTt1818B.1.2340.002375
S747T747PActCct1414All0.000003
S747T747IaCtaTt1414AY.250.000084
S747T747IaCtaTt1313AY.260.000368
S747T747IaCtaTt1212AY.1200.000446
S747T747IaCtaTt1212AY.30.000119
S747T747IaCtaTt1212AY.750.000672
S747T747IaCtaTt1111AY.1190.000388
S747T747IaCtaTt1111AY.840.004812
S747T747IaCtaTt1111B.1.3510.000327
S747T747IaCtaTt1111P.10.000173
S747T747IaCtaTt1010B.1.177.860.001835
S747T747IaCtaTt1010B.1.5610.00397
S747T747AActGct1010P.20.001866
S747T747IaCtaTt99AY.116.10.002803
S747T747delACT---99B.1.6210.000797
S747T747TacTacC88AY.430.000035
S747T747AActGct77AY.1000.000322
S747T747IaCtaTt77B.1.2580.000466
S747T747TacTacA47B.1.4270.000202
S747T747TacTacC37B.1.4270.000151
S747T747NaCtaAt77B.1.617.10.000903
S747T747AActGct77B.1.617.20.000026
S747T747IaCtaTt66AY.1100.000676
S747T747IaCtaTt66AY.1180.000376
S747T747IaCtaTt66AY.1210.000812
S747T747IaCtaTt66AY.290.000095
S747T747AActGct66AY.40.000009
S747T747IaCtaTt66B.1.1600.000187
S747T747TacTacA66B.1.3290.003645
S747T747SaCtaGt66B.1.4290.000141
S747T747IaCtaTt66B.1.5960.000523
S747T747IaCtaTt66C.370.000696
S747T747delACT---66P.10.000095
S747T747TacTacA46P.10.000063
S747T747TacTacG16P.10.000016
S747T747TacTacC16P.10.000016
S747T747IaCtaTt55AY.1000.00023
S747T747IaCtaTt55AY.200.000194
S747T747IaCtaTt55AY.390.000124
S747T747IaCtaTt55AY.4.20.000108
S747T747IaCtaTt55AY.9.20.000184
S747T747TacTacA35B.10.000027
S747T747TacTacC25B.10.000018
S747T747IaCtaTt55B.1.3240.008026
S747T747IaCtaTt55B.1.360.00073
S747T747IaCtaTt55B.1.4690.018051
S747T747IaCtaTt55B.1.5800.020325
S747T747del1acTac-34All0.000001
S747T747del1ACT-NN14All0
S747T747IaCtaTt44AY.1060.00134
S747T747AActGct44AY.250.000024
S747T747PActCct44AY.40.000006
S747T747NaCtaAt44AY.430.000018
S747T747TacTacC44AY.46.20.002541
S747T747NaCtaAt44AY.99.20.000369
S747T747IaCtaTt44B.1.1.2160.003562
S747T747IaCtaTt44B.1.1.4160.00362
S747T747IaCtaTt44B.1.177.550.009324
S747T747IaCtaTt44B.1.5750.001214
S747T747IaCtaTt44B.1.6210.000354
S747T747IaCtaTt44P.1.70.001277
S747T747AActGct33AY.1030.000019
S747T747delACT---33AY.250.000018
S747T747IaCtaTt33AY.270.000194
S747T747AActGct33AY.30.00003
S747T747IaCtaTt33AY.320.001597
S747T747TacTacA23AY.440.000012
S747T747TacTacC13AY.440.000006
S747T747IaCtaTt33AY.540.000286
S747T747IaCtaTt33AY.790.003632
S747T747IaCtaTt33AY.98.10.000145
S747T747IaCtaTt33AY.99.20.000276
S747T747delACT---33B.10.000027
S747T747TacTacC23B.1.10.000036
S747T747TacTacG13B.1.10.000018
S747T747IaCtaTt33B.1.1.1570.00274
S747T747IaCtaTt33B.1.1.3170.001235
S747T747IaCtaTt33B.1.1.480.008621
S747T747IaCtaTt33B.1.1.5180.018987
S747T747IaCtaTt33B.1.177.80.002257
S747T747PActCct33B.1.20.000026
S747T747SaCtaGt33B.1.20.000026
S747T747AActGct33B.1.2340.000396
S747T747IaCtaTt33B.1.4270.000151
S747T747AActGct33B.1.4290.000071
S747T747IaCtaTt33B.1.4510.02459
S747T747delACT---33B.1.617.20.000011
S747T747TacTacA23B.1.617.20.000008
S747T747TacTacC13B.1.617.20.000004
S747T747SaCtaGt33P.10.000047
S747T747delACT---33P.1.150.000697
S747T747TacTacC33P.1.150.000697
S747T747AActGct22A0.000774
S747T747VACTGTC12All0
S747T747VACtGTt12All0
S747T747delACT---22AY.1000.000092
S747T747NaCtaAt22AY.1030.000012
S747T747NaCtaAt22AY.1140.000462
S747T747TacTacA12AY.1170.000085
S747T747TacTacC12AY.1170.000085
S747T747IaCtaTt22AY.190.002281
S747T747TacTacC22AY.230.000139
S747T747NaCtaAt22AY.240.000862
S747T747TacTacC22AY.30.00002
S747T747IaCtaTt22AY.39.10.000079
S747T747NaCtaAt22AY.40.000003
S747T747delACT---22AY.430.000009
S747T747IaCtaTt22AY.460.000208
S747T747IaCtaTt22AY.470.000062
S747T747IaCtaTt22AY.50.000041
S747T747TacTacC12AY.50.000021
S747T747TacTacA12AY.50.000021
S747T747AActGct22AY.550.001835
S747T747IaCtaTt22AY.610.00021
S747T747IaCtaTt22AY.620.000871
S747T747NaCtaAt22AY.750.000112
S747T747IaCtaTt22AY.75.10.000361
S747T747IaCtaTt22AY.980.000158
S747T747IaCtaTt22B0.000256
S747T747IaCtaTt22B.1.1.280.000622
S747T747IaCtaTt22B.1.1.2940.002532
S747T747NaCtaAt12B.1.1.5190.00004
S747T747NaCTaAC12B.1.1.5190.00004
S747T747delACT---22B.1.20.000018
S747T747TacTacG12B.1.20.000009
S747T747TacTacA12B.1.20.000009
S747T747NaCTaAC12B.1.2210.000071
S747T747NaCtaAt12B.1.2210.000071
S747T747SActTct22B.1.2580.000133
S747T747IaCtaTt22B.1.3490.00143
S747T747IaCtaTt22B.1.36.100.009569
S747T747IaCtaTt22B.1.36.190.018519
S747T747IaCtaTt22B.1.3690.00057
S747T747NaCTaAC12B.1.4270.00005
S747T747NaCtaAt12B.1.4270.00005
S747T747IaCtaTt22B.1.4350.022727
S747T747IaCtaTt22B.1.4650.007605
S747T747AActGct22B.1.5260.000047
S747T747IaCtaTt22B.1.5820.000981
S747T747TacTacA22B.1.5950.000522
S747T747TacTacC22B.1.6210.000177
S747T747IaCtaTt22B.1.6280.000705
S747T747IaCtaTt22B.1.6370.000146
S747T747NaCtaAt22C.160.002121
S747T747AActGct22P.10.000032
S747T747IaCtaTt22P.1.140.000096
S747T747IaCtaTt22P.1.150.000465
S747T747IaCtaTt22P.20.000373
S747T747AActGct11A.20.000662
S747T747IaCtaTt11A.20.000662
S747T747IaCtaTt11A.2.20.001689
S747T747AActGct11A.2.40.003367
S747T747IaCtaTt11A.50.001923
S747T747del2ACt--t11All0
S747T747IaCtaTt11AY.10.000396
S747T747del2ACt--t11AY.1020.000027
S747T747NaCtaAt11AY.1020.000027
S747T747delACT---11AY.1030.000006
S747T747IaCtaTt11AY.1070.000466
S747T747IaCtaTt11AY.1160.000287
S747T747del1acTac-11AY.1170.000085
S747T747NaCtaAt11AY.1180.000063
S747T747AActGct11AY.1190.000035
S747T747TacTacC11AY.1190.000035
S747T747TacTacA11AY.140.000088
S747T747AActGct11AY.200.000039
S747T747delACT---11AY.240.000431
S747T747TacTacA11AY.250.000006
S747T747NaCtaAt11AY.250.000006
S747T747del1ACT-NN11AY.250.000006
S747T747TacTacC11AY.260.000028
S747T747delACT---11AY.290.000016
S747T747del1acTac-11AY.290.000016
S747T747NaCtaAt11AY.30.00001
S747T747IaCtaTt11AY.3.10.000085
S747T747TacTacC11AY.340.000097
S747T747delACT---11AY.34.10.00051
S747T747TacTacG11AY.360.000148
S747T747PActCct11AY.39.10.00004
S747T747SaCtaGt11AY.40.000002
S747T747IaCtaTt11AY.4.40.000409
S747T747IaCtaTt11AY.4.50.000107
S747T747PActCct11AY.410.000294
S747T747IaCtaTt11AY.420.00004
S747T747TacTacC11AY.420.00004
S747T747delACT---11AY.420.00004
S747T747AActGct11AY.430.000004
S747T747SaCtaGt11AY.430.000004
S747T747NaCtaAt11AY.440.000006
S747T747TacTacA11AY.450.000122
S747T747IaCtaTt11AY.46.20.000635
S747T747SaCtaGt11AY.46.60.000072
S747T747IaCtaTt11AY.46.60.000072
S747T747NaCtaAt11AY.470.000031
S747T747IaCtaTt11AY.550.000917
S747T747delACT---11AY.680.000274
S747T747IaCtaTt11AY.680.000274
S747T747NaCtaAt11AY.70.000196
S747T747IaCtaTt11AY.7.20.000559
S747T747TacTacC11AY.710.000475
S747T747AActGct11AY.770.001127
S747T747IaCtaTt11AY.850.000427
S747T747IaCtaTt11AY.880.000884
S747T747IaCtaTt11AY.90.000068
S747T747TacTacG11AY.9.20.000037
S747T747TacTacC11AY.910.00073
S747T747IaCtaTt11AY.930.000273
S747T747IaCtaTt11AY.940.000443
S747T747VACTGTC11AY.990.001049
S747T747PActCct11AY.99.20.000092
S747T747NaCtaAt11B0.000128
S747T747NaCtaAt11B.10.000009
S747T747AActGct11B.1.10.000018
S747T747SActTct11B.1.10.000018
S747T747PActCct11B.1.10.000018
S747T747IaCtaTt11B.1.1.100.001115
S747T747IaCtaTt11B.1.1.2140.000055
S747T747IaCtaTt11B.1.1.2650.003155
S747T747IaCtaTt11B.1.1.2800.003086
S747T747IaCtaTt11B.1.1.2860.002899
S747T747IaCtaTt11B.1.1.3020.002075
S747T747TacTacA11B.1.1.3060.000438
S747T747IaCtaTt11B.1.1.3060.000438
S747T747IaCtaTt11B.1.1.3090.005848
S747T747IaCtaTt11B.1.1.3180.000302
S747T747AActGct11B.1.1.3330.001076
S747T747delACT---11B.1.1.3720.000689
S747T747IaCtaTt11B.1.1.390.00051
S747T747delACT---11B.1.1.4090.002833
S747T747NaCtaAt11B.1.1.4160.000905
S747T747TacTacC11B.1.1.5190.00004
S747T747IaCtaTt11B.1.1.5260.003546
S747T747IaCtaTt11B.1.1.630.000386
S747T747delACT---11B.1.1.70.000001
S747T747SaCtaGt11B.1.1.70.000001
S747T747PActCct11B.1.1.70.000001
S747T747TacTacG11B.1.1.980.018519
S747T747IaCtaTt11B.1.110.30.000718
S747T747IaCtaTt11B.1.1160.011628
S747T747IaCtaTt11B.1.1260.001276
S747T747NaCtaAt11B.1.1770.000013
S747T747SActTct11B.1.1770.000013
S747T747TacTacC11B.1.177.160.000664
S747T747IaCtaTt11B.1.177.210.000076
S747T747AActGct11B.1.177.280.007407
S747T747IaCtaTt11B.1.177.420.000894
S747T747IaCtaTt11B.1.177.580.001332
S747T747IaCtaTt11B.1.1990.004132
S747T747AActGct11B.1.20.000009
S747T747VACtGTt11B.1.20.000009
S747T747NaCtaAt11B.1.20.000009
S747T747IaCtaTt11B.1.2010.005682
S747T747IaCtaTt11B.1.2060.000816
S747T747IaCtaTt11B.1.2100.002132
S747T747TacTacC11B.1.2210.000071
S747T747IaCtaTt11B.1.2320.000537
S747T747IaCtaTt11B.1.258.160.001637
S747T747NaCtaAt11B.1.258.170.000104
S747T747SaCtaGt11B.1.2930.0125
S747T747IaCtaTt11B.1.30.002618
S747T747IaCtaTt11B.1.3380.008621
S747T747TacTacA11B.1.3510.00003
S747T747PActCct11B.1.3510.00003
S747T747TacTacC11B.1.360.000146
S747T747TacTacA11B.1.36.170.000494
S747T747IaCtaTt11B.1.36.180.00042
S747T747NaCtaAt11B.1.3830.009009
S747T747IaCtaTt11B.1.3890.001002
S747T747AActGct11B.1.3910.001127
S747T747IaCtaTt11B.1.3950.007042
S747T747TacTacA11B.1.3960.000706
S747T747IaCtaTt11B.1.4000.000429
S747T747IaCtaTt11B.1.4210.007463
S747T747AActGct11B.1.4270.00005
S747T747IaCtaTt11B.1.438.10.000107
S747T747TacTacC11B.1.4520.013699
S747T747del1acTac-11B.1.466.20.000391
S747T747IaCtaTt11B.1.4710.002732
S747T747IaCtaTt11B.1.5030.002488
S747T747NaCtaAt11B.1.5250.000113
S747T747delACT---11B.1.5610.000397
S747T747IaCtaTt11B.1.5710.009709
S747T747IaCtaTt11B.1.5950.000261
S747T747PActCct11B.1.617.10.000129
S747T747IaCtaTt11B.1.617.10.000129
S747T747IaCtaTt11B.1.619.10.000641
S747T747delACT---11B.1.6200.000946
S747T747delACT---11B.1.621.10.000506
S747T747TacTacC11B.1.621.10.000506
S747T747IaCtaTt11B.1.6270.00202
S747T747delACT---11B.1.6380.052632
S747T747IaCtaTt11C.180.002591
S747T747AActGct11C.360.000911
S747T747delACT---11C.370.000116
S747T747TacTacA11C.370.000116
S747T747AActGct11D.20.000075
S747T747TacTacG11D.20.000075
S747T747NaCtaAt11P.10.000016
S747T747IaCtaTt11P.1.120.000484
S747T747delACT---11P.1.130.000898
S747T747delACT---11P.1.70.000319
S747T747IaCtaTt11Q.10.000126
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