CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 735

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S735S735AnonsynTcaGca382038190.99973823765-23767
S735S735AnonsynTcAGcG382010.0002617823765-23767
S735S735LnonsyntCatTa5695660.99472823765-23767
S735S735LnonsynTCaCTa56910.0017574723765-23767
S735S735LnonsynTCACTC56910.0017574723765-23767
S735S735LnonsynTCACTG56910.0017574723765-23767
S735S735SsyntcAtcT4102650.64634123765-23767
S735S735SsyntcAtcG4101240.30243923765-23767
S735S735SsyntcAtcC410210.051219523765-23767
S735S735deldelTCA---4545123765-23767
S735S735XnonsyntCatGa950.55555623765-23767
S735S735XnonsyntCatAa940.44444423765-23767
S735S735PnonsynTcaCca740.57142923765-23767
S735S735del1deltcAtc-720.28571423765-23767
S735S735PnonsynTcACcC720.28571423765-23767
S735S735del1delTca-ca720.28571423765-23767
S735S735del1deltCat-a720.28571423765-23767
S735S735del1delTcA-cN710.14285723765-23767
S735S735PnonsynTcACcG710.14285723765-23767
S735S735TnonsynTcaAca22123765-23767
S735S735FnonsyntCAtTC210.523765-23767
S735S735FnonsyntCAtTT210.523765-23767
S735S735CnonsyntCAtGC11123765-23767

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S735S735ATcaGca38193820All0.00073
S735S735ATcAGcG13820All0
S735S735ATcaGca27972797B.1.6280.985553
S735S735LtCatTa566569All0.000108
S735S735LTCaCTa1569All0
S735S735LTCACTC1569All0
S735S735LTCACTG1569All0
S735S735ATcaGca478478B.1.6270.965657
S735S735StcAtcT265410All0.000051
S735S735StcAtcG124410All0.000024
S735S735StcAtcC21410All0.000004
S735S735ATcaGca295295B.1.6310.993266
S735S735StcAtcT202250AY.40.000314
S735S735StcAtcG48250AY.40.000075
S735S735LtCatTa141142D.20.010581
S735S735LTCaCTa1142D.20.000075
S735S735LtCatTa126126AY.440.000767
S735S735LtCatTa118118B.1.1.70.000106
S735S735ATcaGca7171B.10.00065
S735S735ATcaGca6666B.1.1.70.000059
S735S735delTCA---4545All0.000009
S735S735ATcaGca4545AY.40.00007
S735S735LtCatTa3939B.1.5750.011833
S735S735StcAtcT2023B.1.617.20.000075
S735S735StcAtcG323B.1.617.20.000011
S735S735ATcaGca2020B.1.20.000176
S735S735LtCatTa1414AY.40.000022
S735S735StcAtcG914B.1.1.70.000008
S735S735StcAtcT514B.1.1.70.000004
S735S735LtCatTa1011B.1.617.20.000038
S735S735LTCACTC111B.1.617.20.000004
S735S735XtCatGa59All0.000001
S735S735XtCatAa49All0.000001
S735S735StcAtcC69B.1.10.000109
S735S735StcAtcG39B.1.10.000054
S735S735StcAtcT58AY.1020.000133
S735S735StcAtcG38AY.1020.00008
S735S735LtCatTa88AY.1030.00005
S735S735StcAtcC48AY.1030.000025
S735S735StcAtcG48AY.1030.000025
S735S735LtCatTa88AY.430.000035
S735S735LtCatTa88B.10.000073
S735S735PTcaCca47All0.000001
S735S735del1Tca-ca27All0
S735S735PTcACcC27All0
S735S735del1tcAtc-27All0
S735S735del1tCat-a27All0
S735S735PTcACcG17All0
S735S735del1TcA-cN17All0
S735S735StcAtcT47B.10.000037
S735S735StcAtcG37B.10.000027
S735S735LtCatTa77B.1.1.330.002946
S735S735StcAtcG77Q.10.000884
S735S735ATcaGca66B.1.10.000109
S735S735StcAtcT66B.1.20.000053
S735S735LtCatTa66B.1.6370.000438
S735S735StcAtcT66C.390.113208
S735S735LtCatTa66P.10.000095
S735S735LtCatTa55AY.1000.00023
S735S735StcAtcG55AY.1180.000313
S735S735LtCatTa55AY.340.000485
S735S735StcAtcT35AY.430.000013
S735S735StcAtcG15AY.430.000004
S735S735StcAtcC15AY.430.000004
S735S735ATcaGca55B.1.360.00073
S735S735XtCatGa55D.20.000375
S735S735StcAtcC55P.10.000079
S735S735LtCatTa44AY.30.00004
S735S735delTCA---44AY.430.000018
S735S735ATcaGca34AY.430.000013
S735S735ATcAGcG14AY.430.000004
S735S735StcAtcT44AY.46.60.000289
S735S735LtCatTa44AY.930.001092
S735S735delTCA---44B.10.000037
S735S735StcAtcG44B.1.1600.000125
S735S735delTCA---44B.1.617.20.000015
S735S735StcAtcG44B.1.6210.000354
S735S735StcAtcG23AY.390.000049
S735S735StcAtcT13AY.390.000025
S735S735LtCatTa33AY.980.000237
S735S735LtCatTa33B.1.1770.00004
S735S735LtCatTa33B.1.20.000026
S735S735delTCA---33B.1.6210.000266
S735S735delTCA---33P.10.000047
S735S735PTcACcC220.111111
S735S735delTCA---220.111111
S735S735ATcaGca220.111111
S735S735TTcaAca22All0
S735S735FtCAtTC12All0
S735S735FtCAtTT12All0
S735S735delTCA---22AY.1000.000092
S735S735delTCA---22AY.1030.000012
S735S735StcAtcG22AY.230.000139
S735S735StcAtcG22AY.250.000012
S735S735delTCA---22AY.250.000012
S735S735StcAtcG12AY.30.00001
S735S735StcAtcC12AY.30.00001
S735S735StcAtcT12AY.4.20.000022
S735S735StcAtcG12AY.4.20.000022
S735S735del1tcAtc-12AY.430.000004
S735S735del1tCat-a12AY.430.000004
S735S735StcAtcC12AY.440.000006
S735S735StcAtcG12AY.440.000006
S735S735StcAtcT12AY.470.000031
S735S735StcAtcG12AY.470.000031
S735S735StcAtcG12AY.50.000021
S735S735StcAtcC12AY.50.000021
S735S735ATcaGca22AY.960.004149
S735S735StcAtcG22AY.98.10.000097
S735S735ATcaGca22B0.000256
S735S735XtCatAa22B.10.000018
S735S735LtCatTa22B.1.10.000036
S735S735StcAtcG22B.1.1.3180.000604
S735S735delTCA---22B.1.1.3720.001377
S735S735delTCA---22B.1.1.70.000002
S735S735LtCatTa22B.1.1600.000062
S735S735StcAtcG12B.1.1770.000013
S735S735StcAtcT12B.1.1770.000013
S735S735LtCatTa22B.1.177.420.001789
S735S735ATcaGca22B.1.177.730.001133
S735S735LtCatTa22B.1.2210.000142
S735S735ATcaGca22B.1.2580.000133
S735S735LtCatTa22B.1.4270.000101
S735S735LtCatTa12B.1.5260.000024
S735S735LTCACTG12B.1.5260.000024
S735S735StcAtcC22B.1.5820.000981
S735S735LtCatTa22B.1.5960.000174
S735S735ATcaGca22B.1.5960.000174
S735S735StcAtcG22C.370.000232
S735S735PTcaCca22D.20.00015
S735S735delTCA---22P.1.150.000465
S735S735StcAtcG11A.10.000282
S735S735LtCatTa11A.10.000282
S735S735StcAtcT11A.2.20.001689
S735S735ATcaGca11A.2.5.10.004808
S735S735CtCAtGC11All0
S735S735ATcaGca11AY.1020.000027
S735S735ATcaGca11AY.1030.000006
S735S735CtCAtGC11AY.1030.000006
S735S735LtCatTa11AY.1050.000643
S735S735delTCA---11AY.200.000039
S735S735StcAtcT11AY.220.002092
S735S735LtCatTa11AY.230.00007
S735S735LtCatTa11AY.250.000006
S735S735ATcaGca11AY.250.000006
S735S735LtCatTa11AY.290.000016
S735S735StcAtcG11AY.290.000016
S735S735StcAtcG11AY.300.000396
S735S735LtCatTa11AY.320.000532
S735S735del1TcA-cN11AY.380.000499
S735S735StcAtcG11AY.380.000499
S735S735PTcaCca11AY.40.000002
S735S735LtCatTa11AY.4.2.10.000149
S735S735StcAtcG11AY.420.00004
S735S735XtCatAa11AY.440.000006
S735S735ATcaGca11AY.470.000031
S735S735LtCatTa11AY.50.000021
S735S735ATcaGca11AY.540.000095
S735S735StcAtcG11AY.60.000041
S735S735delTCA---11AY.670.000464
S735S735ATcaGca11AY.730.000665
S735S735LtCatTa11AY.75.10.00018
S735S735LtCatTa11AY.840.000437
S735S735ATcaGca11AY.9.20.000037
S735S735delTCA---11AY.9.20.000037
S735S735StcAtcG11AY.980.000079
S735S735ATcaGca11AY.990.001049
S735S735PTcACcG11AY.990.001049
S735S735ATcaGca11AZ.40.003356
S735S735del1Tca-ca11B.1.10.000018
S735S735PTcaCca11B.1.10.000018
S735S735delTCA---11B.1.10.000018
S735S735ATcaGca11B.1.1.1170.009709
S735S735StcAtcT11B.1.1.1640.005155
S735S735LtCatTa11B.1.1.2210.010101
S735S735LtCatTa11B.1.1.2220.000204
S735S735LtCatTa11B.1.1.3120.001912
S735S735LtCatTa11B.1.1.3350.012987
S735S735LtCatTa11B.1.1.370.000193
S735S735delTCA---11B.1.1.4090.002833
S735S735TTcaAca11B.1.1.70.000001
S735S735del1Tca-ca11B.1.1.70.000001
S735S735LtCatTa11B.1.1110.001175
S735S735LtCatTa11B.1.1470.000756
S735S735ATcaGca11B.1.1770.000013
S735S735XtCatAa11B.1.1770.000013
S735S735delTCA---11B.1.20.000009
S735S735StcAtcG11B.1.214.20.0006
S735S735TTcaAca11B.1.2210.000071
S735S735LtCatTa11B.1.2340.000132
S735S735StcAtcG11B.1.2360.002053
S735S735StcAtcG11B.1.2400.000216
S735S735ATcaGca11B.1.2470.014925
S735S735ATcaGca11B.1.3560.001727
S735S735ATcaGca11B.1.36.100.004785
S735S735LtCatTa11B.1.3670.000792
S735S735LtCatTa11B.1.3690.000285
S735S735LtCatTa11B.1.4200.010417
S735S735LtCatTa11B.1.4290.000024
S735S735LtCatTa11B.1.4340.052632
S735S735StcAtcG11B.1.466.20.000391
S735S735del1tCat-a11B.1.5250.000113
S735S735StcAtcG11B.1.5260.000024
S735S735delTCA---11B.1.5610.000397
S735S735LtCatTa11B.1.617.10.000129
S735S735FtCAtTC11B.1.617.20.000004
S735S735ATcaGca11B.1.617.20.000004
S735S735del1tcAtc-11B.1.617.20.000004
S735S735LtCatTa11B.1.619.10.000641
S735S735delTCA---11B.1.6200.000946
S735S735ATcaGca11B.1.6210.000089
S735S735delTCA---11B.1.6270.00202
S735S735delTCA---11B.1.6380.052632
S735S735LtCatTa11B.1.760.011364
S735S735StcAtcT11B.30.000831
S735S735LtCatTa11B.350.007812
S735S735LtCatTa11B.4.50.011905
S735S735LtCatTa11B.400.000364
S735S735LtCatTa11C.10.002392
S735S735delTCA---11C.370.000116
S735S735StcAtcT11D.20.000075
S735S735StcAtcT11D.30.005917
S735S735FtCAtTT11D.30.005917
S735S735LtCatTa11D.30.005917
S735S735ATcaGca11P.10.000016
S735S735ATcaGca11P.1.120.000484
S735S735delTCA---11P.1.130.000898
S735S735LtCatTa11P.1.140.000048
S735S735LtCatTa11P.1.170.000162
S735S735LtCatTa11P.1.70.000319
S735S735ATcaGca11P.30.001595
S735S735LtCatTa11Q.70.001111
S735S735ATcaGca11Q.80.000165
S735S735delTCA---11Q.80.000165