CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 735 | S735A | nonsyn | Tca | Gca | 3820 | 3819 | 0.999738 | 23765-23767 | |
S | 735 | S735A | nonsyn | TcA | GcG | 3820 | 1 | 0.00026178 | 23765-23767 | |
S | 735 | S735L | nonsyn | tCa | tTa | 569 | 566 | 0.994728 | 23765-23767 | |
S | 735 | S735L | nonsyn | TCa | CTa | 569 | 1 | 0.00175747 | 23765-23767 | |
S | 735 | S735L | nonsyn | TCA | CTC | 569 | 1 | 0.00175747 | 23765-23767 | |
S | 735 | S735L | nonsyn | TCA | CTG | 569 | 1 | 0.00175747 | 23765-23767 | |
S | 735 | S735S | syn | tcA | tcT | 410 | 265 | 0.646341 | 23765-23767 | |
S | 735 | S735S | syn | tcA | tcG | 410 | 124 | 0.302439 | 23765-23767 | |
S | 735 | S735S | syn | tcA | tcC | 410 | 21 | 0.0512195 | 23765-23767 | |
S | 735 | S735del | del | TCA | --- | 45 | 45 | 1 | 23765-23767 | |
S | 735 | S735X | nonsyn | tCa | tGa | 9 | 5 | 0.555556 | 23765-23767 | |
S | 735 | S735X | nonsyn | tCa | tAa | 9 | 4 | 0.444444 | 23765-23767 | |
S | 735 | S735P | nonsyn | Tca | Cca | 7 | 4 | 0.571429 | 23765-23767 | |
S | 735 | S735del1 | del | tcA | tc- | 7 | 2 | 0.285714 | 23765-23767 | |
S | 735 | S735P | nonsyn | TcA | CcC | 7 | 2 | 0.285714 | 23765-23767 | |
S | 735 | S735del1 | del | Tca | -ca | 7 | 2 | 0.285714 | 23765-23767 | |
S | 735 | S735del1 | del | tCa | t-a | 7 | 2 | 0.285714 | 23765-23767 | |
S | 735 | S735del1 | del | TcA | -cN | 7 | 1 | 0.142857 | 23765-23767 | |
S | 735 | S735P | nonsyn | TcA | CcG | 7 | 1 | 0.142857 | 23765-23767 | |
S | 735 | S735T | nonsyn | Tca | Aca | 2 | 2 | 1 | 23765-23767 | |
S | 735 | S735F | nonsyn | tCA | tTC | 2 | 1 | 0.5 | 23765-23767 | |
S | 735 | S735F | nonsyn | tCA | tTT | 2 | 1 | 0.5 | 23765-23767 | |
S | 735 | S735C | nonsyn | tCA | tGC | 1 | 1 | 1 | 23765-23767 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 735 | S735A | Tca | Gca | 3819 | 3820 | All | 0.00073 |
S | 735 | S735A | TcA | GcG | 1 | 3820 | All | 0 |
S | 735 | S735A | Tca | Gca | 2797 | 2797 | B.1.628 | 0.985553 |
S | 735 | S735L | tCa | tTa | 566 | 569 | All | 0.000108 |
S | 735 | S735L | TCa | CTa | 1 | 569 | All | 0 |
S | 735 | S735L | TCA | CTC | 1 | 569 | All | 0 |
S | 735 | S735L | TCA | CTG | 1 | 569 | All | 0 |
S | 735 | S735A | Tca | Gca | 478 | 478 | B.1.627 | 0.965657 |
S | 735 | S735S | tcA | tcT | 265 | 410 | All | 0.000051 |
S | 735 | S735S | tcA | tcG | 124 | 410 | All | 0.000024 |
S | 735 | S735S | tcA | tcC | 21 | 410 | All | 0.000004 |
S | 735 | S735A | Tca | Gca | 295 | 295 | B.1.631 | 0.993266 |
S | 735 | S735S | tcA | tcT | 202 | 250 | AY.4 | 0.000314 |
S | 735 | S735S | tcA | tcG | 48 | 250 | AY.4 | 0.000075 |
S | 735 | S735L | tCa | tTa | 141 | 142 | D.2 | 0.010581 |
S | 735 | S735L | TCa | CTa | 1 | 142 | D.2 | 0.000075 |
S | 735 | S735L | tCa | tTa | 126 | 126 | AY.44 | 0.000767 |
S | 735 | S735L | tCa | tTa | 118 | 118 | B.1.1.7 | 0.000106 |
S | 735 | S735A | Tca | Gca | 71 | 71 | B.1 | 0.00065 |
S | 735 | S735A | Tca | Gca | 66 | 66 | B.1.1.7 | 0.000059 |
S | 735 | S735del | TCA | --- | 45 | 45 | All | 0.000009 |
S | 735 | S735A | Tca | Gca | 45 | 45 | AY.4 | 0.00007 |
S | 735 | S735L | tCa | tTa | 39 | 39 | B.1.575 | 0.011833 |
S | 735 | S735S | tcA | tcT | 20 | 23 | B.1.617.2 | 0.000075 |
S | 735 | S735S | tcA | tcG | 3 | 23 | B.1.617.2 | 0.000011 |
S | 735 | S735A | Tca | Gca | 20 | 20 | B.1.2 | 0.000176 |
S | 735 | S735L | tCa | tTa | 14 | 14 | AY.4 | 0.000022 |
S | 735 | S735S | tcA | tcG | 9 | 14 | B.1.1.7 | 0.000008 |
S | 735 | S735S | tcA | tcT | 5 | 14 | B.1.1.7 | 0.000004 |
S | 735 | S735L | tCa | tTa | 10 | 11 | B.1.617.2 | 0.000038 |
S | 735 | S735L | TCA | CTC | 1 | 11 | B.1.617.2 | 0.000004 |
S | 735 | S735X | tCa | tGa | 5 | 9 | All | 0.000001 |
S | 735 | S735X | tCa | tAa | 4 | 9 | All | 0.000001 |
S | 735 | S735S | tcA | tcC | 6 | 9 | B.1.1 | 0.000109 |
S | 735 | S735S | tcA | tcG | 3 | 9 | B.1.1 | 0.000054 |
S | 735 | S735S | tcA | tcT | 5 | 8 | AY.102 | 0.000133 |
S | 735 | S735S | tcA | tcG | 3 | 8 | AY.102 | 0.00008 |
S | 735 | S735L | tCa | tTa | 8 | 8 | AY.103 | 0.00005 |
S | 735 | S735S | tcA | tcC | 4 | 8 | AY.103 | 0.000025 |
S | 735 | S735S | tcA | tcG | 4 | 8 | AY.103 | 0.000025 |
S | 735 | S735L | tCa | tTa | 8 | 8 | AY.43 | 0.000035 |
S | 735 | S735L | tCa | tTa | 8 | 8 | B.1 | 0.000073 |
S | 735 | S735P | Tca | Cca | 4 | 7 | All | 0.000001 |
S | 735 | S735del1 | Tca | -ca | 2 | 7 | All | 0 |
S | 735 | S735P | TcA | CcC | 2 | 7 | All | 0 |
S | 735 | S735del1 | tcA | tc- | 2 | 7 | All | 0 |
S | 735 | S735del1 | tCa | t-a | 2 | 7 | All | 0 |
S | 735 | S735P | TcA | CcG | 1 | 7 | All | 0 |
S | 735 | S735del1 | TcA | -cN | 1 | 7 | All | 0 |
S | 735 | S735S | tcA | tcT | 4 | 7 | B.1 | 0.000037 |
S | 735 | S735S | tcA | tcG | 3 | 7 | B.1 | 0.000027 |
S | 735 | S735L | tCa | tTa | 7 | 7 | B.1.1.33 | 0.002946 |
S | 735 | S735S | tcA | tcG | 7 | 7 | Q.1 | 0.000884 |
S | 735 | S735A | Tca | Gca | 6 | 6 | B.1.1 | 0.000109 |
S | 735 | S735S | tcA | tcT | 6 | 6 | B.1.2 | 0.000053 |
S | 735 | S735L | tCa | tTa | 6 | 6 | B.1.637 | 0.000438 |
S | 735 | S735S | tcA | tcT | 6 | 6 | C.39 | 0.113208 |
S | 735 | S735L | tCa | tTa | 6 | 6 | P.1 | 0.000095 |
S | 735 | S735L | tCa | tTa | 5 | 5 | AY.100 | 0.00023 |
S | 735 | S735S | tcA | tcG | 5 | 5 | AY.118 | 0.000313 |
S | 735 | S735L | tCa | tTa | 5 | 5 | AY.34 | 0.000485 |
S | 735 | S735S | tcA | tcT | 3 | 5 | AY.43 | 0.000013 |
S | 735 | S735S | tcA | tcG | 1 | 5 | AY.43 | 0.000004 |
S | 735 | S735S | tcA | tcC | 1 | 5 | AY.43 | 0.000004 |
S | 735 | S735A | Tca | Gca | 5 | 5 | B.1.36 | 0.00073 |
S | 735 | S735X | tCa | tGa | 5 | 5 | D.2 | 0.000375 |
S | 735 | S735S | tcA | tcC | 5 | 5 | P.1 | 0.000079 |
S | 735 | S735L | tCa | tTa | 4 | 4 | AY.3 | 0.00004 |
S | 735 | S735del | TCA | --- | 4 | 4 | AY.43 | 0.000018 |
S | 735 | S735A | Tca | Gca | 3 | 4 | AY.43 | 0.000013 |
S | 735 | S735A | TcA | GcG | 1 | 4 | AY.43 | 0.000004 |
S | 735 | S735S | tcA | tcT | 4 | 4 | AY.46.6 | 0.000289 |
S | 735 | S735L | tCa | tTa | 4 | 4 | AY.93 | 0.001092 |
S | 735 | S735del | TCA | --- | 4 | 4 | B.1 | 0.000037 |
S | 735 | S735S | tcA | tcG | 4 | 4 | B.1.160 | 0.000125 |
S | 735 | S735del | TCA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 735 | S735S | tcA | tcG | 4 | 4 | B.1.621 | 0.000354 |
S | 735 | S735S | tcA | tcG | 2 | 3 | AY.39 | 0.000049 |
S | 735 | S735S | tcA | tcT | 1 | 3 | AY.39 | 0.000025 |
S | 735 | S735L | tCa | tTa | 3 | 3 | AY.98 | 0.000237 |
S | 735 | S735L | tCa | tTa | 3 | 3 | B.1.177 | 0.00004 |
S | 735 | S735L | tCa | tTa | 3 | 3 | B.1.2 | 0.000026 |
S | 735 | S735del | TCA | --- | 3 | 3 | B.1.621 | 0.000266 |
S | 735 | S735del | TCA | --- | 3 | 3 | P.1 | 0.000047 |
S | 735 | S735P | TcA | CcC | 2 | 2 | 0.111111 | |
S | 735 | S735del | TCA | --- | 2 | 2 | 0.111111 | |
S | 735 | S735A | Tca | Gca | 2 | 2 | 0.111111 | |
S | 735 | S735T | Tca | Aca | 2 | 2 | All | 0 |
S | 735 | S735F | tCA | tTC | 1 | 2 | All | 0 |
S | 735 | S735F | tCA | tTT | 1 | 2 | All | 0 |
S | 735 | S735del | TCA | --- | 2 | 2 | AY.100 | 0.000092 |
S | 735 | S735del | TCA | --- | 2 | 2 | AY.103 | 0.000012 |
S | 735 | S735S | tcA | tcG | 2 | 2 | AY.23 | 0.000139 |
S | 735 | S735S | tcA | tcG | 2 | 2 | AY.25 | 0.000012 |
S | 735 | S735del | TCA | --- | 2 | 2 | AY.25 | 0.000012 |
S | 735 | S735S | tcA | tcG | 1 | 2 | AY.3 | 0.00001 |
S | 735 | S735S | tcA | tcC | 1 | 2 | AY.3 | 0.00001 |
S | 735 | S735S | tcA | tcT | 1 | 2 | AY.4.2 | 0.000022 |
S | 735 | S735S | tcA | tcG | 1 | 2 | AY.4.2 | 0.000022 |
S | 735 | S735del1 | tcA | tc- | 1 | 2 | AY.43 | 0.000004 |
S | 735 | S735del1 | tCa | t-a | 1 | 2 | AY.43 | 0.000004 |
S | 735 | S735S | tcA | tcC | 1 | 2 | AY.44 | 0.000006 |
S | 735 | S735S | tcA | tcG | 1 | 2 | AY.44 | 0.000006 |
S | 735 | S735S | tcA | tcT | 1 | 2 | AY.47 | 0.000031 |
S | 735 | S735S | tcA | tcG | 1 | 2 | AY.47 | 0.000031 |
S | 735 | S735S | tcA | tcG | 1 | 2 | AY.5 | 0.000021 |
S | 735 | S735S | tcA | tcC | 1 | 2 | AY.5 | 0.000021 |
S | 735 | S735A | Tca | Gca | 2 | 2 | AY.96 | 0.004149 |
S | 735 | S735S | tcA | tcG | 2 | 2 | AY.98.1 | 0.000097 |
S | 735 | S735A | Tca | Gca | 2 | 2 | B | 0.000256 |
S | 735 | S735X | tCa | tAa | 2 | 2 | B.1 | 0.000018 |
S | 735 | S735L | tCa | tTa | 2 | 2 | B.1.1 | 0.000036 |
S | 735 | S735S | tcA | tcG | 2 | 2 | B.1.1.318 | 0.000604 |
S | 735 | S735del | TCA | --- | 2 | 2 | B.1.1.372 | 0.001377 |
S | 735 | S735del | TCA | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 735 | S735L | tCa | tTa | 2 | 2 | B.1.160 | 0.000062 |
S | 735 | S735S | tcA | tcG | 1 | 2 | B.1.177 | 0.000013 |
S | 735 | S735S | tcA | tcT | 1 | 2 | B.1.177 | 0.000013 |
S | 735 | S735L | tCa | tTa | 2 | 2 | B.1.177.42 | 0.001789 |
S | 735 | S735A | Tca | Gca | 2 | 2 | B.1.177.73 | 0.001133 |
S | 735 | S735L | tCa | tTa | 2 | 2 | B.1.221 | 0.000142 |
S | 735 | S735A | Tca | Gca | 2 | 2 | B.1.258 | 0.000133 |
S | 735 | S735L | tCa | tTa | 2 | 2 | B.1.427 | 0.000101 |
S | 735 | S735L | tCa | tTa | 1 | 2 | B.1.526 | 0.000024 |
S | 735 | S735L | TCA | CTG | 1 | 2 | B.1.526 | 0.000024 |
S | 735 | S735S | tcA | tcC | 2 | 2 | B.1.582 | 0.000981 |
S | 735 | S735L | tCa | tTa | 2 | 2 | B.1.596 | 0.000174 |
S | 735 | S735A | Tca | Gca | 2 | 2 | B.1.596 | 0.000174 |
S | 735 | S735S | tcA | tcG | 2 | 2 | C.37 | 0.000232 |
S | 735 | S735P | Tca | Cca | 2 | 2 | D.2 | 0.00015 |
S | 735 | S735del | TCA | --- | 2 | 2 | P.1.15 | 0.000465 |
S | 735 | S735S | tcA | tcG | 1 | 1 | A.1 | 0.000282 |
S | 735 | S735L | tCa | tTa | 1 | 1 | A.1 | 0.000282 |
S | 735 | S735S | tcA | tcT | 1 | 1 | A.2.2 | 0.001689 |
S | 735 | S735A | Tca | Gca | 1 | 1 | A.2.5.1 | 0.004808 |
S | 735 | S735C | tCA | tGC | 1 | 1 | All | 0 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.102 | 0.000027 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.103 | 0.000006 |
S | 735 | S735C | tCA | tGC | 1 | 1 | AY.103 | 0.000006 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.105 | 0.000643 |
S | 735 | S735del | TCA | --- | 1 | 1 | AY.20 | 0.000039 |
S | 735 | S735S | tcA | tcT | 1 | 1 | AY.22 | 0.002092 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.23 | 0.00007 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.25 | 0.000006 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.25 | 0.000006 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.29 | 0.000016 |
S | 735 | S735S | tcA | tcG | 1 | 1 | AY.29 | 0.000016 |
S | 735 | S735S | tcA | tcG | 1 | 1 | AY.30 | 0.000396 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.32 | 0.000532 |
S | 735 | S735del1 | TcA | -cN | 1 | 1 | AY.38 | 0.000499 |
S | 735 | S735S | tcA | tcG | 1 | 1 | AY.38 | 0.000499 |
S | 735 | S735P | Tca | Cca | 1 | 1 | AY.4 | 0.000002 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 735 | S735S | tcA | tcG | 1 | 1 | AY.42 | 0.00004 |
S | 735 | S735X | tCa | tAa | 1 | 1 | AY.44 | 0.000006 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.47 | 0.000031 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.5 | 0.000021 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.54 | 0.000095 |
S | 735 | S735S | tcA | tcG | 1 | 1 | AY.6 | 0.000041 |
S | 735 | S735del | TCA | --- | 1 | 1 | AY.67 | 0.000464 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.73 | 0.000665 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.75.1 | 0.00018 |
S | 735 | S735L | tCa | tTa | 1 | 1 | AY.84 | 0.000437 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.9.2 | 0.000037 |
S | 735 | S735del | TCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 735 | S735S | tcA | tcG | 1 | 1 | AY.98 | 0.000079 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AY.99 | 0.001049 |
S | 735 | S735P | TcA | CcG | 1 | 1 | AY.99 | 0.001049 |
S | 735 | S735A | Tca | Gca | 1 | 1 | AZ.4 | 0.003356 |
S | 735 | S735del1 | Tca | -ca | 1 | 1 | B.1.1 | 0.000018 |
S | 735 | S735P | Tca | Cca | 1 | 1 | B.1.1 | 0.000018 |
S | 735 | S735del | TCA | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 735 | S735A | Tca | Gca | 1 | 1 | B.1.1.117 | 0.009709 |
S | 735 | S735S | tcA | tcT | 1 | 1 | B.1.1.164 | 0.005155 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.1.221 | 0.010101 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.1.222 | 0.000204 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.1.312 | 0.001912 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.1.335 | 0.012987 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.1.37 | 0.000193 |
S | 735 | S735del | TCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
S | 735 | S735T | Tca | Aca | 1 | 1 | B.1.1.7 | 0.000001 |
S | 735 | S735del1 | Tca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.111 | 0.001175 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.147 | 0.000756 |
S | 735 | S735A | Tca | Gca | 1 | 1 | B.1.177 | 0.000013 |
S | 735 | S735X | tCa | tAa | 1 | 1 | B.1.177 | 0.000013 |
S | 735 | S735del | TCA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 735 | S735S | tcA | tcG | 1 | 1 | B.1.214.2 | 0.0006 |
S | 735 | S735T | Tca | Aca | 1 | 1 | B.1.221 | 0.000071 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.234 | 0.000132 |
S | 735 | S735S | tcA | tcG | 1 | 1 | B.1.236 | 0.002053 |
S | 735 | S735S | tcA | tcG | 1 | 1 | B.1.240 | 0.000216 |
S | 735 | S735A | Tca | Gca | 1 | 1 | B.1.247 | 0.014925 |
S | 735 | S735A | Tca | Gca | 1 | 1 | B.1.356 | 0.001727 |
S | 735 | S735A | Tca | Gca | 1 | 1 | B.1.36.10 | 0.004785 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.367 | 0.000792 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.369 | 0.000285 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.420 | 0.010417 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.429 | 0.000024 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.434 | 0.052632 |
S | 735 | S735S | tcA | tcG | 1 | 1 | B.1.466.2 | 0.000391 |
S | 735 | S735del1 | tCa | t-a | 1 | 1 | B.1.525 | 0.000113 |
S | 735 | S735S | tcA | tcG | 1 | 1 | B.1.526 | 0.000024 |
S | 735 | S735del | TCA | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 735 | S735F | tCA | tTC | 1 | 1 | B.1.617.2 | 0.000004 |
S | 735 | S735A | Tca | Gca | 1 | 1 | B.1.617.2 | 0.000004 |
S | 735 | S735del1 | tcA | tc- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.619.1 | 0.000641 |
S | 735 | S735del | TCA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 735 | S735A | Tca | Gca | 1 | 1 | B.1.621 | 0.000089 |
S | 735 | S735del | TCA | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 735 | S735del | TCA | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.1.76 | 0.011364 |
S | 735 | S735S | tcA | tcT | 1 | 1 | B.3 | 0.000831 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.35 | 0.007812 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.4.5 | 0.011905 |
S | 735 | S735L | tCa | tTa | 1 | 1 | B.40 | 0.000364 |
S | 735 | S735L | tCa | tTa | 1 | 1 | C.1 | 0.002392 |
S | 735 | S735del | TCA | --- | 1 | 1 | C.37 | 0.000116 |
S | 735 | S735S | tcA | tcT | 1 | 1 | D.2 | 0.000075 |
S | 735 | S735S | tcA | tcT | 1 | 1 | D.3 | 0.005917 |
S | 735 | S735F | tCA | tTT | 1 | 1 | D.3 | 0.005917 |
S | 735 | S735L | tCa | tTa | 1 | 1 | D.3 | 0.005917 |
S | 735 | S735A | Tca | Gca | 1 | 1 | P.1 | 0.000016 |
S | 735 | S735A | Tca | Gca | 1 | 1 | P.1.12 | 0.000484 |
S | 735 | S735del | TCA | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 735 | S735L | tCa | tTa | 1 | 1 | P.1.14 | 0.000048 |
S | 735 | S735L | tCa | tTa | 1 | 1 | P.1.17 | 0.000162 |
S | 735 | S735L | tCa | tTa | 1 | 1 | P.1.7 | 0.000319 |
S | 735 | S735A | Tca | Gca | 1 | 1 | P.3 | 0.001595 |
S | 735 | S735L | tCa | tTa | 1 | 1 | Q.7 | 0.001111 |
S | 735 | S735A | Tca | Gca | 1 | 1 | Q.8 | 0.000165 |
S | 735 | S735del | TCA | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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