CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 732 | T732I | nonsyn | aCc | aTc | 1951 | 1914 | 0.981035 | 23756-23758 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 732 | T732I | aCc | aTc | 1914 | 1951 | All | 0.000366 |
S | 732 | T732I | aCc | aTc | 1074 | 1074 | B.1.1.7 | 0.000961 |
S | 732 | T732I | aCc | aTc | 92 | 124 | AY.4 | 0.000143 |
S | 732 | T732I | aCc | aTc | 114 | 114 | Q.1 | 0.014401 |
S | 732 | T732I | aCc | aTc | 84 | 84 | AY.42 | 0.003379 |
S | 732 | T732I | aCc | aTc | 40 | 40 | AY.43 | 0.000177 |
S | 732 | T732I | aCc | aTc | 36 | 36 | B.1.617.2 | 0.000136 |
S | 732 | T732I | aCc | aTc | 35 | 35 | AY.103 | 0.000217 |
S | 732 | T732I | aCc | aTc | 31 | 31 | P.1.14 | 0.001482 |
S | 732 | T732I | aCc | aTc | 30 | 30 | P.1 | 0.000473 |
S | 732 | T732I | aCc | aTc | 29 | 29 | B.1.214.2 | 0.017386 |
S | 732 | T732I | aCc | aTc | 27 | 27 | P.1.7 | 0.008621 |
S | 732 | T732I | aCc | aTc | 23 | 23 | AY.119 | 0.000812 |
S | 732 | T732I | aCc | aTc | 19 | 19 | AY.44 | 0.000116 |
S | 732 | T732I | aCc | aTc | 16 | 16 | B.1 | 0.000147 |
S | 732 | T732I | aCc | aTc | 15 | 15 | AY.25 | 0.00009 |
S | 732 | T732I | aCc | aTc | 12 | 12 | AY.3 | 0.000119 |
S | 732 | T732I | aCc | aTc | 10 | 10 | AY.26 | 0.000283 |
S | 732 | T732I | aCc | aTc | 10 | 10 | B.1.177.10 | 0.00878 |
S | 732 | T732I | aCc | aTc | 10 | 10 | B.1.526 | 0.000235 |
S | 732 | T732I | aCc | aTc | 8 | 9 | AY.39 | 0.000198 |
S | 732 | T732I | aCc | aTc | 8 | 8 | AY.75 | 0.000448 |
S | 732 | T732I | aCc | aTc | 8 | 8 | AY.84 | 0.0035 |
S | 732 | T732I | aCc | aTc | 7 | 7 | B.1.2 | 0.000062 |
S | 732 | T732I | aCc | aTc | 7 | 7 | P.3 | 0.011164 |
S | 732 | T732I | aCc | aTc | 6 | 6 | AY.100 | 0.000276 |
S | 732 | T732I | aCc | aTc | 6 | 6 | AY.102 | 0.000159 |
S | 732 | T732I | aCc | aTc | 3 | 6 | AY.20 | 0.000117 |
S | 732 | T732I | aCc | aTc | 6 | 6 | AY.4.2 | 0.00013 |
S | 732 | T732I | aCc | aTc | 5 | 5 | AY.29 | 0.000079 |
S | 732 | T732I | aCc | aTc | 5 | 5 | AY.5 | 0.000103 |
S | 732 | T732I | aCc | aTc | 5 | 5 | AY.54 | 0.000477 |
S | 732 | T732I | aCc | aTc | 5 | 5 | B.1.1 | 0.000091 |
S | 732 | T732I | aCc | aTc | 4 | 4 | AY.101 | 0.001962 |
S | 732 | T732I | aCc | aTc | 4 | 4 | AY.114 | 0.000924 |
S | 732 | T732I | aCc | aTc | 4 | 4 | AY.3.1 | 0.000341 |
S | 732 | T732I | aCc | aTc | 4 | 4 | AY.9.2 | 0.000147 |
S | 732 | T732I | aCc | aTc | 4 | 4 | B.1.623 | 0.002146 |
S | 732 | T732I | aCc | aTc | 4 | 4 | B.1.637 | 0.000292 |
S | 732 | T732I | aCc | aTc | 3 | 3 | AY.118 | 0.000188 |
S | 732 | T732I | aCc | aTc | 3 | 3 | AY.98.1 | 0.000145 |
S | 732 | T732I | aCc | aTc | 3 | 3 | B.1.1.214 | 0.000166 |
S | 732 | T732I | aCc | aTc | 3 | 3 | B.1.221 | 0.000213 |
S | 732 | T732I | aCc | aTc | 3 | 3 | B.1.258 | 0.0002 |
S | 732 | T732I | aCc | aTc | 3 | 3 | B.1.351.2 | 0.000908 |
S | 732 | T732I | aCc | aTc | 3 | 3 | B.1.621 | 0.000266 |
S | 732 | T732I | aCc | aTc | 2 | 2 | A.1 | 0.000564 |
S | 732 | T732I | aCc | aTc | 2 | 2 | AY.14 | 0.000176 |
S | 732 | T732I | aCc | aTc | 2 | 2 | AY.45 | 0.000243 |
S | 732 | T732I | aCc | aTc | 2 | 2 | AY.59 | 0.001059 |
S | 732 | T732I | aCc | aTc | 2 | 2 | AY.6 | 0.000082 |
S | 732 | T732I | aCc | aTc | 2 | 2 | AY.85 | 0.000854 |
S | 732 | T732I | aCc | aTc | 2 | 2 | AY.9 | 0.000135 |
S | 732 | T732I | aCc | aTc | 2 | 2 | B.1.1.291 | 0.001485 |
S | 732 | T732I | aCc | aTc | 2 | 2 | B.1.351 | 0.000059 |
S | 732 | T732I | aCc | aTc | 2 | 2 | B.1.36.36 | 0.001204 |
S | 732 | T732I | aCc | aTc | 2 | 2 | B.1.617.1 | 0.000258 |
S | 732 | T732I | aCc | aTc | 2 | 2 | B.1.619 | 0.001742 |
S | 732 | T732I | aCc | aTc | 2 | 2 | C.37 | 0.000232 |
S | 732 | T732I | aCc | aTc | 2 | 2 | D.2 | 0.00015 |
S | 732 | T732I | aCc | aTc | 2 | 2 | P.1.15 | 0.000465 |
S | 732 | T732I | aCc | aTc | 2 | 2 | Q.3 | 0.00029 |
S | 732 | T732I | aCc | aTc | 1 | 1 | A.23.1 | 0.000704 |
S | 732 | T732I | aCc | aTc | 1 | 1 | A.5 | 0.001923 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.1 | 0.000396 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.10 | 0.00053 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.107 | 0.000466 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.113 | 0.000142 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.16 | 0.00038 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.16.1 | 0.00047 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.23 | 0.00007 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.27 | 0.000065 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.33 | 0.000067 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.34 | 0.000097 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.39.1 | 0.00004 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.46.4 | 0.000165 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.51 | 0.000909 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.52 | 0.000814 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.63 | 0.000387 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.66 | 0.00107 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.67 | 0.000464 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.71 | 0.000475 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.72 | 0.001361 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.74 | 0.000116 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.75.1 | 0.00018 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.9.1 | 0.000084 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.90 | 0.000684 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.95 | 0.000761 |
S | 732 | T732I | aCc | aTc | 1 | 1 | AY.99.2 | 0.000092 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.1.356 | 0.008547 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.1.369 | 0.000446 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.1.37 | 0.000193 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.1.50 | 0.000679 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.111 | 0.001175 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.160 | 0.000031 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.177 | 0.000013 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.366 | 0.004878 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.398 | 0.002976 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.427 | 0.00005 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.429 | 0.000024 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.474 | 0.001901 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.582 | 0.000491 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.619.1 | 0.000641 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.1.620 | 0.000946 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.20 | 0.023256 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.31 | 0.003731 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.40 | 0.000364 |
S | 732 | T732I | aCc | aTc | 1 | 1 | B.58 | 0.010204 |
S | 732 | T732I | aCc | aTc | 1 | 1 | C.16 | 0.00106 |
S | 732 | T732I | aCc | aTc | 1 | 1 | C.36.3 | 0.000567 |
S | 732 | T732I | aCc | aTc | 1 | 1 | P.1.1 | 0.000318 |
S | 732 | T732I | aCc | aTc | 1 | 1 | P.1.6 | 0.001946 |
S | 732 | T732I | aCc | aTc | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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