CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 723 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	723	T723T		syn	acC	acT	28972	28907	0.997756	23729-23731

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	723	T723T	acC	acT	28907	28972	All	0.005529
S	723	T723T	acC	acT	8523	8523	C.37	0.989206
S	723	T723T	acC	acT	3023	3023	B.1.526	0.071054
S	723	T723T	acC	acT	2914	2914	B.1.1.1	0.951976
S	723	T723T	acC	acT	2225	2225	B.1.1.369	0.99286
S	723	T723T	acC	acT	1740	1740	C.36.3	0.986954
S	723	T723T	acC	acT	1428	1429	B.1.1.372	0.983471
S	723	T723T	acC	acT	1271	1271	C.35	0.983746
S	723	T723T	acC	acT	1090	1090	C.36	0.992714
S	723	T723T	acC	acT	942	942	C.16	0.99894
S	723	T723T	acC	acT	579	579	C.30	1
S	723	T723T	acC	acT	394	394	C.1	0.942584
S	723	T723T	acC	acT	381	381	C.18	0.987047
S	723	T723T	acC	acT	374	374	C.37.1	0.979058
S	723	T723T	acC	acT	367	367	C.36.3.1	0.997283
S	723	T723T	acC	acT	241	241	C.36.1	1
S	723	T723T	acC	acT	231	231	C.14	1
S	723	T723T	acC	acT	230	230	C.1.2	0.978723
S	723	T723T	acC	acT	223	223	C.8	0.995536
S	723	T723T	acC	acT	182	184	B.1	0.001667
S	723	T723T	acC	acT	172	172	C.23	1
S	723	T723T	acC	acT	150	150	C.2.1	1
S	723	T723T	acC	acT	149	149	C.30.1	1
S	723	T723T	acC	acT	139	139	C.12	1
S	723	T723T	acC	acT	136	136	C.26	1
S	723	T723T	acC	acT	131	131	C.3	1
S	723	T723T	acC	acT	117	117	C.38	0.943548
S	723	T723T	acC	acT	82	105	B.1.1.7	0.000073
S	723	T723T	acC	acT	100	100	C.4	1
S	723	T723T	acC	acT	96	96	B.1.1	0.001742
S	723	T723T	acC	acT	94	94	C.11	1
S	723	T723T	acC	acT	81	81	B.1.1.375	0.964286
S	723	T723T	acC	acT	63	63	B.1.351	0.001873
S	723	T723T	acC	acT	62	62	C.2	1
S	723	T723T	acC	acT	56	56	C.31	1
S	723	T723T	acC	acT	54	54	C.27	1
S	723	T723T	acC	acT	53	53	C.39	1
S	723	T723T	acC	acT	44	52	B.1.617.2	0.000166
S	723	T723T	acC	acT	40	49	AY.103	0.000248
S	723	T723T	acC	acT	43	43	C.32	1
S	723	T723T	acC	acT	39	39	C.13	1
S	723	T723T	acC	acT	37	37	C.19	1
S	723	T723T	acC	acT	36	36	C.40	1
S	723	T723T	acC	acT	27	31	AY.4	0.000042
S	723	T723T	acC	acT	31	31	C.9	0.939394
S	723	T723T	acC	acT	29	29	C.36.2	1
S	723	T723T	acC	acT	29	29	C.7	1
S	723	T723T	acC	acT	27	27	C.34	1
S	723	T723T	acC	acT	27	27	C.6	1
S	723	T723T	acC	acT	25	25	C.28	1
S	723	T723T	acC	acT	23	23	B.1.214.2	0.013789
S	723	T723T	acC	acT	18	18	B.1.1.335	0.233766
S	723	T723T	acC	acT	17	17	C.33	1
S	723	T723T	acC	acT	14	15	AY.119	0.000494
S	723	T723T	acC	acT	13	14	AY.3	0.000129
S	723	T723T	acC	acT	14	14	C.22	1
S	723	T723T	acC	acT	14	14	C.29	0.875
S	723	T723T	acC	acT	13	13	C.1.1	1
S	723	T723T	acC	acT	13	13	C.17	0.722222
S	723	T723T	acC	acT	13	13	C.20	1
S	723	T723T	acC	acT	13	13	P.1.15	0.00302
S	723	T723T	acC	acT	9	12	AY.25	0.000054
S	723	T723T	acC	acT	12	12	B.1.177	0.000158
S	723	T723T	acC	acT	11	11	C.5	1
S	723	T723T	acC	acT	9	9	P.1	0.000142
S	723	T723T	acC	acT	8	8	AY.26	0.000226
S	723	T723T	acC	acT	8	8	C.25	1
S	723	T723T	acC	acT	7	7	AY.44	0.000043
S	723	T723T	acC	acT	7	7	B	0.000895
S	723	T723T	acC	acT	7	7	C.21	1
S	723	T723T	acC	acT	6	6	AY.27	0.000388
S	723	T723T	acC	acT	6	6	AY.43	0.000027
S	723	T723T	acC	acT	5	5	Q.3	0.000725
S	723	T723T	acC	acT	4	4		0.222222
S	723	T723T	acC	acT	4	4	AY.9.2	0.000147
S	723	T723T	acC	acT	4	4	C.10	1
S	723	T723T	acC	acT	3	3	AY.102	0.00008
S	723	T723T	acC	acT	3	3	AY.39	0.000074
S	723	T723T	acC	acT	3	3	AY.79	0.003632
S	723	T723T	acC	acT	3	3	B.1.1.409	0.008499
S	723	T723T	acC	acT	3	3	B.1.1.70	0.001023
S	723	T723T	acC	acT	3	3	B.1.160	0.000094
S	723	T723T	acC	acT	2	3	B.1.177.73	0.001133
S	723	T723T	acC	acT	3	3	B.1.2	0.000026
S	723	T723T	acC	acT	3	3	B.1.243	0.000209
S	723	T723T	acC	acT	3	3	B.1.36.29	0.001552
S	723	T723T	acC	acT	3	3	B.1.527	0.011111
S	723	T723T	acC	acT	3	3	B.1.596	0.000261
S	723	T723T	acC	acT	3	3	P.1.12	0.001452
S	723	T723T	acC	acT	2	2	AY.33	0.000134
S	723	T723T	acC	acT	2	2	AY.42	0.00008
S	723	T723T	acC	acT	1	2	AY.46	0.000104
S	723	T723T	acC	acT	2	2	B.1.1.526	0.007092
S	723	T723T	acC	acT	2	2	B.1.170	0.008621
S	723	T723T	acC	acT	2	2	B.1.23	0.012121
S	723	T723T	acC	acT	2	2	B.1.524	0.002813
S	723	T723T	acC	acT	2	2	B.1.625	0.004706
S	723	T723T	acC	acT	2	2	B.1.81	0.042553
S	723	T723T	acC	acT	2	2	P.1.1	0.000635
S	723	T723T	acC	acT	2	2	P.1.7	0.000639
S	723	T723T	acC	acT	1	1	A	0.000387
S	723	T723T	acC	acT	1	1	AY.11	0.001339
S	723	T723T	acC	acT	1	1	AY.113	0.000142
S	723	T723T	acC	acT	1	1	AY.117	0.000085
S	723	T723T	acC	acT	1	1	AY.19	0.00114
S	723	T723T	acC	acT	1	1	AY.23	0.00007
S	723	T723T	acC	acT	1	1	AY.34	0.000097
S	723	T723T	acC	acT	1	1	AY.34.1	0.00051
S	723	T723T	acC	acT	1	1	AY.36	0.000148
S	723	T723T	acC	acT	1	1	AY.37	0.000316
S	723	T723T	acC	acT	1	1	AY.47	0.000031
S	723	T723T	acC	acT	1	1	AY.54	0.000095
S	723	T723T	acC	acT	1	1	AY.55	0.000917
S	723	T723T	acC	acT	1	1	AY.75	0.000056
S	723	T723T	acC	acT	1	1	AY.9.1	0.000084
S	723	T723T	acC	acT	1	1	AY.90	0.000684
S	723	T723T	acC	acT	1	1	B.1.1.220	0.001859
S	723	T723T	acC	acT	1	1	B.1.1.25	0.000569
S	723	T723T	acC	acT	1	1	B.1.1.28	0.000311
S	723	T723T	acC	acT	1	1	B.1.1.29	0.010309
S	723	T723T	acC	acT	1	1	B.1.1.343	0.020833
S	723	T723T	acC	acT	1	1	B.1.1.348	0.000796
S	723	T723T	acC	acT	1	1	B.1.1.376	0.005952
S	723	T723T	acC	acT	1	1	B.1.1.528	0.004808
S	723	T723T	acC	acT	1	1	B.1.140	0.018868
S	723	T723T	acC	acT	1	1	B.1.146	0.004237
S	723	T723T	acC	acT	1	1	B.1.177.6	0.000977
S	723	T723T	acC	acT	1	1	B.1.177.84	0.006667
S	723	T723T	acC	acT	1	1	B.1.214.3	0.007143
S	723	T723T	acC	acT	1	1	B.1.222	0.001692
S	723	T723T	acC	acT	1	1	B.1.298	0.002114
S	723	T723T	acC	acT	1	1	B.1.311	0.000275
S	723	T723T	acC	acT	1	1	B.1.315	0.006061
S	723	T723T	acC	acT	1	1	B.1.324	0.001605
S	723	T723T	acC	acT	1	1	B.1.36.8	0.001
S	723	T723T	acC	acT	1	1	B.1.367	0.000792
S	723	T723T	acC	acT	1	1	B.1.375	0.00082
S	723	T723T	acC	acT	1	1	B.1.398	0.002976
S	723	T723T	acC	acT	1	1	B.1.416	0.001269
S	723	T723T	acC	acT	1	1	B.1.427	0.00005
S	723	T723T	acC	acT	1	1	B.1.429	0.000024
S	723	T723T	acC	acT	1	1	B.1.466.2	0.000391
S	723	T723T	acC	acT	1	1	B.1.499	0.00105
S	723	T723T	acC	acT	1	1	B.1.540	0.009709
S	723	T723T	acC	acT	1	1	B.1.600	0.005848
S	723	T723T	acC	acT	1	1	B.1.609	0.000479
S	723	T723T	acC	acT	1	1	B.1.78	0.008547
S	723	T723T	acC	acT	1	1	N.6	0.007092
S	723	T723T	acC	acT	1	1	P.1.14	0.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.