CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 723

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S723T723TsynacCacT28972289070.99775623729-23731
S723T723TsynacCacA28972640.0022090323729-23731
S723T723TsynacCacG2897210.000034516123729-23731
S723T723InonsynaCcaTc291128770.9883223729-23731
S723T723InonsynaCCaTT2911340.011679823729-23731
S723T723PnonsynAccCcc98970.98979623729-23731
S723T723PnonsynAcCCcA9810.010204123729-23731
S723T723deldelACC---4444123729-23731
S723T723AnonsynAccGcc3838123729-23731
S723T723NnonsynaCcaAc1414123729-23731
S723T723SnonsynAccTcc840.523729-23731
S723T723SnonsynaCCaGT820.2523729-23731
S723T723SnonsynaCcaGc820.2523729-23731
S723T723del1delaCca-c320.66666723729-23731
S723T723del1delacCac-310.33333323729-23731
S723T723del2delaCCa--210.523729-23731
S723T723del2delACC--T210.523729-23731
S723T723DnonsynACCGAT11123729-23731

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S723T723TacCacT2890728972All0.005529
S723T723TacCacA6428972All0.000012
S723T723TacCacG128972All0
S723T723TacCacT85238523C.370.989206
S723T723TacCacT30233023B.1.5260.071054
S723T723TacCacT29142914B.1.1.10.951976
S723T723IaCcaTc28772911All0.00055
S723T723IaCCaTT342911All0.000007
S723T723TacCacT22252225B.1.1.3690.99286
S723T723TacCacT17401740C.36.30.986954
S723T723TacCacT14281429B.1.1.3720.983471
S723T723TacCacG11429B.1.1.3720.000689
S723T723TacCacT12711271C.350.983746
S723T723TacCacT10901090C.360.992714
S723T723IaCcaTc994994B.1.3890.995992
S723T723TacCacT942942C.160.99894
S723T723IaCcaTc832833B.1.1.70.000745
S723T723IaCCaTT1833B.1.1.70.000001
S723T723TacCacT579579C.301
S723T723TacCacT394394C.10.942584
S723T723TacCacT381381C.180.987047
S723T723TacCacT374374C.37.10.979058
S723T723TacCacT367367C.36.3.10.997283
S723T723TacCacT241241C.36.11
S723T723TacCacT231231C.141
S723T723TacCacT230230C.1.20.978723
S723T723TacCacT223223C.80.995536
S723T723TacCacT182184B.10.001667
S723T723TacCacA2184B.10.000018
S723T723TacCacT172172C.231
S723T723TacCacT150150C.2.11
S723T723TacCacT149149C.30.11
S723T723TacCacT139139C.121
S723T723TacCacT136136C.261
S723T723TacCacT131131C.31
S723T723TacCacT117117C.380.943548
S723T723IaCcaTc108108B.10.000989
S723T723TacCacT82105B.1.1.70.000073
S723T723TacCacA23105B.1.1.70.000021
S723T723TacCacT100100C.41
S723T723PAccCcc9798All0.000019
S723T723PAcCCcA198All0
S723T723TacCacT9696B.1.10.001742
S723T723IaCcaTc7895B.1.5260.001833
S723T723IaCCaTT1795B.1.5260.0004
S723T723TacCacT9494C.111
S723T723TacCacT8181B.1.1.3750.964286
S723T723IaCcaTc7979B.1.20.000696
S723T723IaCcaTc7070B.1.617.20.000264
S723T723IaCcaTc6666AY.1030.00041
S723T723PAccCcc6464B.1.3510.001902
S723T723TacCacT6363B.1.3510.001873
S723T723TacCacT6262C.21
S723T723IaCcaTc6060B.1.1.2840.006444
S723T723TacCacT5656C.311
S723T723TacCacT5454C.271
S723T723TacCacT5353C.391
S723T723TacCacT4452B.1.617.20.000166
S723T723TacCacA852B.1.617.20.00003
S723T723IaCcaTc5151AY.250.000307
S723T723TacCacT4049AY.1030.000248
S723T723TacCacA949AY.1030.000056
S723T723IaCcaTc4646AY.40.000072
S723T723delACC---4444All0.000008
S723T723IaCcaTc4444P.10.000693
S723T723TacCacT4343C.321
S723T723IaCcaTc4242AY.440.000256
S723T723TacCacT3939C.131
S723T723AAccGcc3838All0.000007
S723T723IaCcaTc3838B.1.1.5190.001509
S723T723TacCacT3737C.191
S723T723TacCacT3636C.401
S723T723TacCacT2731AY.40.000042
S723T723TacCacA431AY.40.000006
S723T723IaCcaTc3131B.1.4290.000729
S723T723TacCacT3131C.90.939394
S723T723IaCcaTc3030AY.30.000298
S723T723IaCcaTc2929B.1.6370.002119
S723T723TacCacT2929C.36.21
S723T723TacCacT2929C.71
S723T723TacCacT2727C.341
S723T723TacCacT2727C.61
S723T723TacCacT2525C.281
S723T723TacCacT2323B.1.214.20.013789
S723T723TacCacT1818B.1.1.3350.233766
S723T723IaCcaTc1717B.1.1.2140.000943
S723T723TacCacT1717C.331
S723T723TacCacT1415AY.1190.000494
S723T723TacCacA115AY.1190.000035
S723T723IaCcaTc1515AY.370.004741
S723T723NaCcaAc1414All0.000003
S723T723TacCacT1314AY.30.000129
S723T723TacCacA114AY.30.00001
S723T723TacCacT1414C.221
S723T723TacCacT1414C.290.875
S723T723TacCacT1313C.1.11
S723T723TacCacT1313C.170.722222
S723T723TacCacT1313C.201
S723T723TacCacT1313P.1.150.00302
S723T723TacCacT912AY.250.000054
S723T723TacCacA312AY.250.000018
S723T723IaCcaTc1212AY.260.00034
S723T723IaCcaTc1212AY.390.000297
S723T723AAccGcc1212AY.440.000073
S723T723TacCacT1212B.1.1770.000158
S723T723TacCacT1111C.51
S723T723IaCcaTc99B.1.2430.000626
S723T723IaCcaTc99B.1.4270.000454
S723T723IaCcaTc99B.1.5750.002731
S723T723TacCacT99P.10.000142
S723T723IaCcaTc99Q.30.001305
S723T723IaCcaTc99R.10.00081
S723T723SAccTcc48All0.000001
S723T723SaCCaGT28All0
S723T723SaCcaGc28All0
S723T723TacCacT88AY.260.000226
S723T723IaCcaTc88AY.470.000249
S723T723IaCcaTc88B.1.3510.000238
S723T723TacCacT88C.251
S723T723IaCcaTc77AY.1180.000439
S723T723IaCcaTc77AY.430.000031
S723T723TacCacT77AY.440.000043
S723T723TacCacT77B0.000895
S723T723IaCcaTc77B.1.10.000127
S723T723IaCcaTc77B.1.5960.00061
S723T723IaCcaTc77B.1.6230.003755
S723T723TacCacT77C.211
S723T723TacCacT66AY.270.000388
S723T723TacCacT66AY.430.000027
S723T723IaCcaTc66B.1.1.5230.009375
S723T723PAccCcc66B.1.1770.000079
S723T723IaCcaTc66B.1.5250.000679
S723T723IaCcaTc66B.1.5640.002555
S723T723IaCCaTT66C.370.000696
S723T723IaCcaTc55AY.200.000194
S723T723IaCcaTc55AY.39.10.000198
S723T723delACC---55B.10.000046
S723T723IaCcaTc55B.1.3110.001373
S723T723TacCacT55Q.30.000725
S723T723TacCacT440.222222
S723T723SAccTcc240.111111
S723T723SaCCaGT240.111111
S723T723AAccGcc44AY.1190.000141
S723T723AAccGcc44AY.40.000006
S723T723delACC---44AY.430.000018
S723T723IaCcaTc44AY.750.000224
S723T723TacCacT44AY.9.20.000147
S723T723AAccGcc44B.1.1.70.000004
S723T723PAccCcc44B.1.1600.000125
S723T723TacCacA44B.1.5250.000453
S723T723IaCcaTc44B.1.6210.000354
S723T723TacCacT44C.101
S723T723IaCCaTT44C.380.032258
S723T723IaCcaTc44P.1.170.000647
S723T723del1aCca-c23All0
S723T723del1acCac-13All0
S723T723TacCacT33AY.1020.00008
S723T723IaCcaTc33AY.1170.000254
S723T723IaCcaTc33AY.1190.000106
S723T723IaCcaTc33AY.270.000194
S723T723IaCcaTc33AY.3.10.000256
S723T723TacCacT33AY.390.000074
S723T723NaCcaAc33AY.40.000005
S723T723AAccGcc33AY.430.000013
S723T723TacCacT33AY.790.003632
S723T723TacCacT33B.1.1.4090.008499
S723T723NaCcaAc33B.1.1.70.000003
S723T723TacCacT33B.1.1.700.001023
S723T723TacCacT33B.1.1600.000094
S723T723TacCacT23B.1.177.730.001133
S723T723TacCacA13B.1.177.730.000566
S723T723TacCacT33B.1.20.000026
S723T723IaCcaTc33B.1.2210.000213
S723T723TacCacT33B.1.2430.000209
S723T723TacCacT33B.1.36.290.001552
S723T723TacCacT33B.1.5270.011111
S723T723TacCacT33B.1.5960.000261
S723T723delACC---33B.1.617.20.000011
S723T723delACC---33B.1.6210.000266
S723T723delACC---33P.10.000047
S723T723TacCacT33P.1.120.001452
S723T723IaCcaTc33P.1.130.002695
S723T723AAccGcc33R.10.00027
S723T723IaCCaTT220.111111
S723T723del2aCCa--12All0
S723T723del2ACC--T12All0
S723T723delACC---22AY.1030.000012
S723T723IaCcaTc22AY.1130.000285
S723T723delACC---22AY.250.000012
S723T723TacCacT22AY.330.000134
S723T723IaCcaTc22AY.340.000194
S723T723TacCacT22AY.420.00008
S723T723del1aCca-c22AY.430.000009
S723T723PAccCcc22AY.430.000009
S723T723TacCacA12AY.460.000104
S723T723TacCacT12AY.460.000104
S723T723TacCacA22AY.690.000373
S723T723IaCcaTc22B.1.1.1280.014184
S723T723IaCcaTc22B.1.1.3180.000604
S723T723IaCcaTc22B.1.1.370.000386
S723T723IaCcaTc22B.1.1.4860.003155
S723T723TacCacA22B.1.1.5230.003125
S723T723TacCacT22B.1.1.5260.007092
S723T723PAccCcc22B.1.1.70.000002
S723T723delACC---22B.1.1.70.000002
S723T723IaCcaTc22B.1.1110.00235
S723T723TacCacT22B.1.1700.008621
S723T723IaCcaTc22B.1.1770.000026
S723T723PAccCcc22B.1.177.770.001452
S723T723PAccCcc22B.1.177.810.000379
S723T723PAccCcc22B.1.2210.000142
S723T723TacCacT22B.1.230.012121
S723T723PAccCcc22B.1.351.20.000605
S723T723TacCacT22B.1.5240.002813
S723T723AAccGcc22B.1.617.20.000008
S723T723TacCacT22B.1.6250.004706
S723T723IaCcaTc22B.1.6280.000705
S723T723TacCacT22B.1.810.042553
S723T723IaCCaTT22C.36.3.10.005435
S723T723TacCacT22P.1.10.000635
S723T723IaCcaTc22P.1.100.000539
S723T723delACC---22P.1.150.000465
S723T723PAccCcc22P.1.160.000748
S723T723TacCacT22P.1.70.000639
S723T723TacCacT11A0.000387
S723T723IaCcaTc11A.10.000282
S723T723IaCcaTc11A.2.50.000499
S723T723DACCGAT11All0
S723T723IaCcaTc11AY.100.00053
S723T723delACC---11AY.1000.000046
S723T723PAccCcc11AY.1020.000027
S723T723AAccGcc11AY.1060.000335
S723T723IaCcaTc11AY.1070.000466
S723T723TacCacT11AY.110.001339
S723T723IaCcaTc11AY.1100.000113
S723T723TacCacT11AY.1130.000142
S723T723IaCcaTc11AY.1140.000231
S723T723TacCacT11AY.1170.000085
S723T723delACC---11AY.1170.000085
S723T723AAccGcc11AY.1170.000085
S723T723NaCcaAc11AY.1180.000063
S723T723IaCcaTc11AY.120.000316
S723T723AAccGcc11AY.1200.000037
S723T723IaCcaTc11AY.1210.000135
S723T723IaCcaTc11AY.160.00038
S723T723TacCacT11AY.190.00114
S723T723IaCcaTc11AY.20.000356
S723T723SAccTcc11AY.200.000039
S723T723TacCacA11AY.200.000039
S723T723TacCacT11AY.230.00007
S723T723IaCcaTc11AY.290.000016
S723T723AAccGcc11AY.30.00001
S723T723delACC---11AY.30.00001
S723T723AAccGcc11AY.330.000067
S723T723TacCacT11AY.340.000097
S723T723TacCacT11AY.34.10.00051
S723T723PAccCcc11AY.34.10.00051
S723T723TacCacT11AY.360.000148
S723T723TacCacT11AY.370.000316
S723T723NaCcaAc11AY.370.000316
S723T723IaCcaTc11AY.380.000499
S723T723IaCcaTc11AY.4.20.000022
S723T723IaCcaTc11AY.4.40.000409
S723T723IaCcaTc11AY.420.00004
S723T723DACCGAT11AY.430.000004
S723T723delACC---11AY.440.000006
S723T723TacCacT11AY.470.000031
S723T723TacCacA11AY.50.000021
S723T723IaCcaTc11AY.50.000021
S723T723PAccCcc11AY.50.000021
S723T723TacCacT11AY.540.000095
S723T723IaCcaTc11AY.540.000095
S723T723TacCacT11AY.550.000917
S723T723IaCcaTc11AY.660.00107
S723T723delACC---11AY.670.000464
S723T723IaCcaTc11AY.680.000274
S723T723SaCcaGc11AY.690.000187
S723T723TacCacT11AY.750.000056
S723T723delACC---11AY.840.000437
S723T723TacCacT11AY.9.10.000084
S723T723delACC---11AY.9.20.000037
S723T723NaCcaAc11AY.9.20.000037
S723T723TacCacT11AY.900.000684
S723T723delACC---11AY.950.000761
S723T723IaCcaTc11AY.98.10.000048
S723T723delACC---11AY.990.001049
S723T723IaCcaTc11AZ.30.00152
S723T723SAccTcc11B.10.000009
S723T723PAccCcc11B.10.000009
S723T723NaCcaAc11B.10.000009
S723T723PAcCCcA11B.1.10.000018
S723T723TacCacT11B.1.1.2200.001859
S723T723IaCcaTc11B.1.1.2220.000204
S723T723TacCacT11B.1.1.250.000569
S723T723IaCcaTc11B.1.1.2690.001353
S723T723TacCacT11B.1.1.280.000311
S723T723IaCcaTc11B.1.1.280.000311
S723T723TacCacT11B.1.1.290.010309
S723T723NaCcaAc11B.1.1.3000.010753
S723T723IaCcaTc11B.1.1.3060.000438
S723T723TacCacT11B.1.1.3430.020833
S723T723TacCacT11B.1.1.3480.000796
S723T723IaCcaTc11B.1.1.3480.000796
S723T723del2aCCa--11B.1.1.3720.000689
S723T723delACC---11B.1.1.3720.000689
S723T723TacCacT11B.1.1.3760.005952
S723T723delACC---11B.1.1.4090.002833
S723T723IaCcaTc11B.1.1.4640.001473
S723T723TacCacT11B.1.1.5280.004808
S723T723NaCcaAc11B.1.1180.006711
S723T723TacCacT11B.1.1400.018868
S723T723TacCacT11B.1.1460.004237
S723T723AAccGcc11B.1.1770.000013
S723T723TacCacT11B.1.177.60.000977
S723T723IaCcaTc11B.1.177.70.000165
S723T723PAccCcc11B.1.177.730.000566
S723T723PAccCcc11B.1.177.80.000752
S723T723TacCacT11B.1.177.840.006667
S723T723delACC---11B.1.20.000009
S723T723PAccCcc11B.1.214.20.0006
S723T723IaCcaTc11B.1.214.20.0006
S723T723TacCacT11B.1.214.30.007143
S723T723TacCacT11B.1.2220.001692
S723T723TacCacT11B.1.2980.002114
S723T723TacCacT11B.1.3110.000275
S723T723TacCacT11B.1.3150.006061
S723T723TacCacT11B.1.3240.001605
S723T723IaCcaTc11B.1.3490.000715
S723T723TacCacT11B.1.36.80.001
S723T723TacCacT11B.1.3670.000792
S723T723TacCacA11B.1.3690.000285
S723T723TacCacT11B.1.3750.00082
S723T723IaCcaTc11B.1.3960.000706
S723T723IaCcaTc11B.1.3970.004854
S723T723TacCacT11B.1.3980.002976
S723T723TacCacT11B.1.4160.001269
S723T723TacCacT11B.1.4270.00005
S723T723TacCacT11B.1.4290.000024
S723T723IaCcaTc11B.1.438.10.000107
S723T723TacCacT11B.1.466.20.000391
S723T723TacCacT11B.1.4990.00105
S723T723PAccCcc11B.1.5250.000113
S723T723TacCacT11B.1.5400.009709
S723T723IaCcaTc11B.1.5770.000687
S723T723IaCcaTc11B.1.5880.00091
S723T723del2ACC--T11B.1.5960.000087
S723T723del1acCac-11B.1.5960.000087
S723T723TacCacT11B.1.6000.005848
S723T723TacCacT11B.1.6090.000479
S723T723NaCcaAc11B.1.6090.000479
S723T723NaCcaAc11B.1.617.20.000004
S723T723PAccCcc11B.1.617.20.000004
S723T723delACC---11B.1.6200.000946
S723T723IaCcaTc11B.1.621.10.000506
S723T723delACC---11B.1.6270.00202
S723T723IaCcaTc11B.1.6360.006711
S723T723delACC---11B.1.6380.052632
S723T723TacCacT11B.1.780.008547
S723T723IaCcaTc11B.350.007812
S723T723IaCCaTT11C.1.20.004255
S723T723delACC---11C.170.055556
S723T723IaCCaTT11C.36.30.000567
S723T723delACC---11C.370.000116
S723T723TacCacT11N.60.007092
S723T723IaCcaTc11P.1.10.000318
S723T723IaCcaTc11P.1.120.000484
S723T723delACC---11P.1.130.000898
S723T723TacCacT11P.1.140.000048
S723T723IaCcaTc11P.20.000187
S723T723IaCcaTc11Q.40.000455
S723T723IaCcaTc11Q.50.016949
S723T723IaCcaTc11Q.60.006623
S723T723SaCcaGc11W.30.005263