CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 720

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S720I720VnonsynAttGtt11381138123720-23722
S720I720deldelATT---4040123720-23722
S720I720IsynatTatC38280.73684223720-23722
S720I720IsynatTatA38100.26315823720-23722
S720I720LnonsynAttCtt1515123720-23722
S720I720TnonsynaTtaCt11100.90909123720-23722
S720I720TnonsynaTTaCA1110.090909123720-23722
S720I720del1delaTta-t940.44444423720-23722
S720I720del1delAtt-tt930.33333323720-23722
S720I720del1delAtT-tN910.11111123720-23722
S720I720del1delatTat-910.11111123720-23722
S720I720NnonsynaTtaAt44123720-23722
S720I720MnonsynatTatG33123720-23722
S720I720SnonsynaTtaGt22123720-23722
S720I720CnonsynATtTGt22123720-23722
S720I720FnonsynAtTTtC210.523720-23722
S720I720FnonsynAttTtt210.523720-23722
S720I720AnonsynATtGCt11123720-23722
S720I720del2delaTTa--11123720-23722

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S720I720VAttGtt11381138All0.000218
S720I720VAttGtt798798B.1.1.2140.044255
S720I720VAttGtt262262P.40.996198
S720I720delATT---4040All0.000008
S720I720IatTatC2838All0.000005
S720I720IatTatA1038All0.000002
S720I720VAttGtt2323AY.40.000036
S720I720LAttCtt1515All0.000003
S720I720LAttCtt1313AY.440.000079
S720I720TaTtaCt1011All0.000002
S720I720TaTTaCA111All0
S720I720VAttGtt1010B.1.1.70.000009
S720I720IatTatC910B.1.1.70.000008
S720I720IatTatA110B.1.1.70.000001
S720I720del1aTta-t49All0.000001
S720I720del1Att-tt39All0.000001
S720I720del1atTat-19All0
S720I720del1AtT-tN19All0
S720I720VAttGtt88AY.430.000035
S720I720VAttGtt88B.1.20.00007
S720I720IatTatC66AY.440.000037
S720I720IatTatA55AY.30.00005
S720I720delATT---55AY.430.000022
S720I720delATT---55B.10.000046
S720I720VAttGtt55B.1.1.330.002104
S720I720NaTtaAt44All0.000001
S720I720VAttGtt44AY.1200.000149
S720I720VAttGtt44AY.20.001425
S720I720del1aTta-t24AY.430.000009
S720I720del1Att-tt14AY.430.000004
S720I720del1AtT-tN14AY.430.000004
S720I720delATT---44P.10.000063
S720I720MatTatG33All0.000001
S720I720VAttGtt33B.10.000027
S720I720delATT---33B.1.617.20.000011
S720I720MatTatG220.111111
S720I720CATtTGt220.111111
S720I720SaTtaGt22All0
S720I720CATtTGt22All0
S720I720FAtTTtC12All0
S720I720FAttTtt12All0
S720I720del1atTat-12AY.1170.000085
S720I720del1aTta-t12AY.1170.000085
S720I720TaTtaCt22AY.250.000012
S720I720delATT---22AY.250.000012
S720I720IatTatC12AY.40.000002
S720I720IatTatA12AY.40.000002
S720I720NaTtaAt22AY.430.000009
S720I720IatTatC22AY.470.000062
S720I720IatTatC12B.10.000009
S720I720IatTatA12B.10.000009
S720I720VAttGtt22B.1.10.000036
S720I720VAttGtt22B.1.1.2220.000408
S720I720TaTtaCt22B.1.1.70.000002
S720I720VAttGtt22B.1.1770.000026
S720I720IatTatC22B.1.1770.000026
S720I720delATT---22B.1.6210.000177
S720I720TaTtaCt22D.20.00015
S720I720VAttGtt22M.10.046512
S720I720delATT---22P.1.150.000465
S720I720AATtGCt11All0
S720I720del2aTTa--11All0
S720I720delATT---11AY.1000.000046
S720I720delATT---11AY.1030.000006
S720I720del2aTTa--11AY.1030.000006
S720I720IatTatC11AY.1030.000006
S720I720VAttGtt11AY.1080.001103
S720I720IatTatA11AY.1190.000035
S720I720del1Att-tt11AY.250.000006
S720I720delATT---11AY.30.00001
S720I720TaTtaCt11AY.430.000004
S720I720LAttCtt11AY.430.000004
S720I720delATT---11AY.440.000006
S720I720TaTTaCA11AY.440.000006
S720I720TaTtaCt11AY.530.000288
S720I720delATT---11AY.670.000464
S720I720IatTatC11AY.690.000187
S720I720delATT---11AY.840.000437
S720I720delATT---11AY.9.20.000037
S720I720delATT---11AY.950.000761
S720I720AATtGCt11AY.990.001049
S720I720IatTatC11AY.99.20.000092
S720I720del1aTta-t11B.10.000009
S720I720TaTtaCt11B.10.000009
S720I720FAtTTtC11B.1.10.000018
S720I720VAttGtt11B.1.1.1010.01
S720I720IatTatC11B.1.1.2170.003636
S720I720delATT---11B.1.1.3720.000689
S720I720delATT---11B.1.1.4090.002833
S720I720IatTatA11B.1.1.5190.00004
S720I720delATT---11B.1.1.70.000001
S720I720FAttTtt11B.1.1.70.000001
S720I720IatTatC11B.1.1600.000031
S720I720IatTatC11B.1.177.540.000606
S720I720MatTatG11B.1.177.730.000566
S720I720TaTtaCt11B.1.177.860.000183
S720I720SaTtaGt11B.1.20.000009
S720I720NaTtaAt11B.1.20.000009
S720I720del1Att-tt11B.1.20.000009
S720I720delATT---11B.1.20.000009
S720I720VAttGtt11B.1.2220.001692
S720I720VAttGtt11B.1.36.290.000517
S720I720NaTtaAt11B.1.3770.004566
S720I720LAttCtt11B.1.438.10.000107
S720I720IatTatC11B.1.5260.000024
S720I720SaTtaGt11B.1.617.20.000004
S720I720delATT---11B.1.6200.000946
S720I720delATT---11B.1.6270.00202
S720I720delATT---11B.1.6380.052632
S720I720VAttGtt11B.1.780.008547
S720I720delATT---11C.370.000116
S720I720delATT---11P.1.130.000898