CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 72 | G72V | nonsyn | gGg | gTg | 913 | 907 | 0.993428 | 21776-21778 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 72 | G72V | gGg | gTg | 907 | 913 | All | 0.000173 |
S | 72 | G72V | gGg | gTg | 194 | 194 | AY.4 | 0.000302 |
S | 72 | G72V | gGg | gTg | 161 | 164 | B.1.1.7 | 0.000144 |
S | 72 | G72V | gGg | gTg | 77 | 77 | B.1.617.2 | 0.00029 |
S | 72 | G72V | gGg | gTg | 64 | 64 | AY.46.4 | 0.010528 |
S | 72 | G72V | gGg | gTg | 45 | 47 | AY.43 | 0.000199 |
S | 72 | G72V | gGg | gTg | 45 | 45 | AY.44 | 0.000274 |
S | 72 | G72V | gGg | gTg | 42 | 42 | AY.25 | 0.000253 |
S | 72 | G72V | gGg | gTg | 19 | 19 | B.1.526 | 0.000447 |
S | 72 | G72V | gGg | gTg | 14 | 14 | AY.45 | 0.001704 |
S | 72 | G72V | gGg | gTg | 13 | 13 | AY.102 | 0.000345 |
S | 72 | G72V | gGg | gTg | 13 | 13 | AY.117 | 0.001099 |
S | 72 | G72V | gGg | gTg | 13 | 13 | AY.46.2 | 0.008259 |
S | 72 | G72V | gGg | gTg | 11 | 11 | AY.29 | 0.000174 |
S | 72 | G72V | gGg | gTg | 10 | 10 | AY.103 | 0.000062 |
S | 72 | G72V | gGg | gTg | 9 | 9 | AY.4.2 | 0.000195 |
S | 72 | G72V | gGg | gTg | 8 | 8 | AY.33 | 0.000534 |
S | 72 | G72V | gGg | gTg | 8 | 8 | B.1.2 | 0.00007 |
S | 72 | G72V | gGg | gTg | 7 | 7 | AY.3 | 0.00007 |
S | 72 | G72V | gGg | gTg | 7 | 7 | AY.46.6 | 0.000505 |
S | 72 | G72V | gGg | gTg | 6 | 6 | B.1.177 | 0.000079 |
S | 72 | G72V | gGg | gTg | 5 | 5 | AY.6 | 0.000206 |
S | 72 | G72V | gGg | gTg | 5 | 5 | B.1 | 0.000046 |
S | 72 | G72V | gGg | gTg | 5 | 5 | B.1.258 | 0.000333 |
S | 72 | G72V | gGg | gTg | 4 | 4 | AY.121 | 0.000541 |
S | 72 | G72V | gGg | gTg | 4 | 4 | AY.20 | 0.000155 |
S | 72 | G72V | gGg | gTg | 4 | 4 | AY.41 | 0.001176 |
S | 72 | G72V | gGg | gTg | 4 | 4 | AY.9.1 | 0.000335 |
S | 72 | G72V | gGg | gTg | 4 | 4 | B.1.1.70 | 0.001364 |
S | 72 | G72V | gGg | gTg | 3 | 3 | AY.111 | 0.000549 |
S | 72 | G72V | gGg | gTg | 3 | 3 | AY.26 | 0.000085 |
S | 72 | G72V | gGg | gTg | 3 | 3 | AY.75.1 | 0.000541 |
S | 72 | G72V | gGg | gTg | 3 | 3 | B.1.1.519 | 0.000119 |
S | 72 | G72V | gGg | gTg | 3 | 3 | B.1.177.57 | 0.000843 |
S | 72 | G72V | gGg | gTg | 3 | 3 | B.1.243 | 0.000209 |
S | 72 | G72V | gGg | gTg | 3 | 3 | B.1.351 | 0.000089 |
S | 72 | G72V | gGg | gTg | 3 | 3 | B.1.351.3 | 0.002629 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.23 | 0.000139 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.34 | 0.000194 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.5 | 0.000041 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.61 | 0.00021 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.64 | 0.00119 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.7 | 0.000392 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.70 | 0.000417 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.86 | 0.00166 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.9 | 0.000135 |
S | 72 | G72V | gGg | gTg | 2 | 2 | AY.98 | 0.000158 |
S | 72 | G72V | gGg | gTg | 2 | 2 | B.1.1.263 | 0.003115 |
S | 72 | G72V | gGg | gTg | 2 | 2 | B.1.1.318 | 0.000604 |
S | 72 | G72V | gGg | gTg | 2 | 2 | B.1.556 | 0.015038 |
S | 72 | G72V | gGg | gTg | 2 | 2 | B.1.621 | 0.000177 |
S | 72 | G72V | gGg | gTg | 2 | 2 | P.1 | 0.000032 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AU.3 | 0.00211 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.100 | 0.000046 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.11 | 0.001339 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.110 | 0.000113 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.116 | 0.000287 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.116.1 | 0.000311 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.118 | 0.000063 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.119 | 0.000035 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.12 | 0.000316 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.120 | 0.000037 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.120.1 | 0.000321 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.14 | 0.000088 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.2 | 0.000356 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.29.1 | 0.000221 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.3.1 | 0.000085 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.37 | 0.000316 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.39 | 0.000025 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.42 | 0.00004 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.5.3 | 0.000337 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.51 | 0.000909 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.60 | 0.000938 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.75 | 0.000056 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.85 | 0.000427 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.9.2 | 0.000037 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.91 | 0.00073 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.92 | 0.000287 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AY.99.2 | 0.000092 |
S | 72 | G72V | gGg | gTg | 1 | 1 | AZ.2 | 0.000821 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.1 | 0.000018 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.1.148 | 0.008772 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.1.269 | 0.001353 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.1.389 | 0.006061 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.177.17 | 0.000821 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.177.35 | 0.000691 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.177.42 | 0.000894 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.177.73 | 0.000566 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.177.8 | 0.000752 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.177.81 | 0.000189 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.311 | 0.000275 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.36.16 | 0.001425 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.36.17 | 0.000494 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.367 | 0.000792 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.426 | 0.001009 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.427 | 0.00005 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.429 | 0.000024 |
S | 72 | G72V | gGg | gTg | 1 | 1 | B.1.466.2 | 0.000391 |
S | 72 | G72V | gGg | gTg | 1 | 1 | C.36.3.1 | 0.002717 |
S | 72 | G72V | gGg | gTg | 1 | 1 | D.2 | 0.000075 |
S | 72 | G72V | gGg | gTg | 1 | 1 | P.1.10 | 0.000269 |
S | 72 | G72V | gGg | gTg | 1 | 1 | P.1.14 | 0.000048 |
S | 72 | G72V | gGg | gTg | 1 | 1 | P.2 | 0.000187 |
S | 72 | G72V | gGg | gTg | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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