CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 72

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	72	G72E		nonsyn	gGg	gAg	1511	1511	1	21776-21778
S	72	G72R		nonsyn	Ggg	Agg	1391	1338	0.961898	21776-21778
S	72	G72R		nonsyn	Ggg	Cgg	1391	51	0.0366643	21776-21778
S	72	G72R		nonsyn	GgG	AgA	1391	1	0.000718907	21776-21778
S	72	G72R		nonsyn	GgG	CgC	1391	1	0.000718907	21776-21778
S	72	G72del		del	GGG	---	1116	1116	1	21776-21778
S	72	G72G		syn	ggG	ggA	1029	847	0.823129	21776-21778
S	72	G72G		syn	ggG	ggT	1029	169	0.164237	21776-21778
S	72	G72G		syn	ggG	ggC	1029	13	0.0126336	21776-21778
S	72	G72V		nonsyn	gGg	gTg	913	907	0.993428	21776-21778
S	72	G72V		nonsyn	gGG	gTT	913	4	0.00438116	21776-21778
S	72	G72V		nonsyn	gGG	gTA	913	1	0.00109529	21776-21778
S	72	G72V		nonsyn	gGG	gTC	913	1	0.00109529	21776-21778
S	72	G72W		nonsyn	Ggg	Tgg	331	331	1	21776-21778
S	72	G72A		nonsyn	gGg	gCg	36	34	0.944444	21776-21778
S	72	G72A		nonsyn	gGG	gCT	36	2	0.0555556	21776-21778
S	72	G72del1		del	Ggg	-gg	10	6	0.6	21776-21778
S	72	G72del1		del	GGG	-NN	10	3	0.3	21776-21778
S	72	G72del1		del	ggG	gg-	10	1	0.1	21776-21778
S	72	G72D		nonsyn	gGG	gAT	8	6	0.75	21776-21778
S	72	G72D		nonsyn	gGG	gAC	8	2	0.25	21776-21778
S	72	G72K		nonsyn	GGg	AAg	6	5	0.833333	21776-21778
S	72	G72K		nonsyn	GGG	AAA	6	1	0.166667	21776-21778
S	72	G72N		nonsyn	GGG	AAT	5	5	1	21776-21778
S	72	G72S		nonsyn	GgG	AgT	5	5	1	21776-21778
S	72	G72P		nonsyn	GGg	CCg	2	2	1	21776-21778
S	72	G72Q		nonsyn	GGg	CAg	2	2	1	21776-21778
S	72	G72L		nonsyn	GGg	CTg	2	2	1	21776-21778
S	72	G72C		nonsyn	GgG	TgT	1	1	1	21776-21778
S	72	G72X		nonsyn	GGG	TAA	1	1	1	21776-21778
S	72	G72F		nonsyn	GGG	TTT	1	1	1	21776-21778
S	72	G72H		nonsyn	GGG	CAC	1	1	1	21776-21778
S	72	G72T		nonsyn	GGG	ACT	1	1	1	21776-21778
S	72	G72del2		del	GGg	--g	1	1	1	21776-21778

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	72	G72E	gGg	gAg	1511	1511	All	0.000289
S	72	G72R	Ggg	Agg	1338	1391	All	0.000256
S	72	G72R	Ggg	Cgg	51	1391	All	0.00001
S	72	G72R	GgG	CgC	1	1391	All	0
S	72	G72R	GgG	AgA	1	1391	All	0
S	72	G72del	GGG	---	1116	1116	All	0.000213
S	72	G72G	ggG	ggA	847	1029	All	0.000162
S	72	G72G	ggG	ggT	169	1029	All	0.000032
S	72	G72G	ggG	ggC	13	1029	All	0.000002
S	72	G72V	gGg	gTg	907	913	All	0.000173
S	72	G72V	gGG	gTT	4	913	All	0.000001
S	72	G72V	gGG	gTC	1	913	All	0
S	72	G72V	gGG	gTA	1	913	All	0
S	72	G72R	Ggg	Agg	651	651	B.1.311	0.178748
S	72	G72E	gGg	gAg	459	459	AY.103	0.00285
S	72	G72W	Ggg	Tgg	331	331	All	0.000063
S	72	G72del	GGG	---	281	281	C.37	0.032614
S	72	G72R	Ggg	Agg	231	231	B.1.2	0.002034
S	72	G72V	gGg	gTg	194	194	AY.4	0.000302
S	72	G72G	ggG	ggA	116	169	B.1.1.7	0.000104
S	72	G72G	ggG	ggT	53	169	B.1.1.7	0.000047
S	72	G72E	gGg	gAg	169	169	C.37	0.019615
S	72	G72V	gGg	gTg	161	164	B.1.1.7	0.000144
S	72	G72V	gGG	gTT	3	164	B.1.1.7	0.000003
S	72	G72E	gGg	gAg	146	146	AY.4	0.000227
S	72	G72G	ggG	ggA	141	141	B.1.1.37	0.027194
S	72	G72G	ggG	ggA	133	133	AY.23	0.009277
S	72	G72E	gGg	gAg	132	132	B.1.1.7	0.000118
S	72	G72del	GGG	---	94	94	AY.43	0.000416
S	72	G72E	gGg	gAg	94	94	B.1.617.2	0.000354
S	72	G72W	Ggg	Tgg	91	91	AY.43	0.000403
S	72	G72del	GGG	---	85	85	B.1.617.2	0.00032
S	72	G72V	gGg	gTg	77	77	B.1.617.2	0.00029
S	72	G72del	GGG	---	67	67	B.1.1.7	0.00006
S	72	G72V	gGg	gTg	64	64	AY.46.4	0.010528
S	72	G72del	GGG	---	58	58	AY.4	0.00009
S	72	G72W	Ggg	Tgg	58	58	B.1.1.7	0.000052
S	72	G72R	Ggg	Agg	54	55	AY.25	0.000325
S	72	G72R	Ggg	Cgg	1	55	AY.25	0.000006
S	72	G72G	ggG	ggA	54	55	B.1.1	0.00098
S	72	G72G	ggG	ggT	1	55	B.1.1	0.000018
S	72	G72R	Ggg	Agg	50	50	C.35	0.0387
S	72	G72del	GGG	---	48	48	AY.44	0.000292
S	72	G72V	gGg	gTg	45	47	AY.43	0.000199
S	72	G72V	gGG	gTC	1	47	AY.43	0.000004
S	72	G72V	gGG	gTA	1	47	AY.43	0.000004
S	72	G72V	gGg	gTg	45	45	AY.44	0.000274
S	72	G72V	gGg	gTg	42	42	AY.25	0.000253
S	72	G72del	GGG	---	42	42	AY.25	0.000253
S	72	G72R	Ggg	Agg	38	40	B.1.1.7	0.000034
S	72	G72R	Ggg	Cgg	2	40	B.1.1.7	0.000002
S	72	G72G	ggG	ggA	21	37	AY.4	0.000033
S	72	G72G	ggG	ggT	15	37	AY.4	0.000023
S	72	G72G	ggG	ggC	1	37	AY.4	0.000002
S	72	G72G	ggG	ggA	31	37	B.1	0.000284
S	72	G72G	ggG	ggT	6	37	B.1	0.000055
S	72	G72A	gGg	gCg	34	36	All	0.000007
S	72	G72A	gGG	gCT	2	36	All	0
S	72	G72G	ggG	ggA	24	34	B.1.2	0.000211
S	72	G72G	ggG	ggT	9	34	B.1.2	0.000079
S	72	G72G	ggG	ggC	1	34	B.1.2	0.000009
S	72	G72R	Ggg	Agg	30	33	AY.103	0.000186
S	72	G72R	Ggg	Cgg	2	33	AY.103	0.000012
S	72	G72R	GgG	CgC	1	33	AY.103	0.000006
S	72	G72del	GGG	---	33	33	B.1	0.000302
S	72	G72E	gGg	gAg	32	32	B.1.1.258	0.104235
S	72	G72R	Ggg	Agg	23	31	AY.4	0.000036
S	72	G72R	Ggg	Cgg	8	31	AY.4	0.000012
S	72	G72del	GGG	---	31	31	AY.9	0.002095
S	72	G72G	ggG	ggA	29	29	B.1.351	0.000862
S	72	G72W	Ggg	Tgg	28	28	AY.4	0.000044
S	72	G72W	Ggg	Tgg	26	26	B.1.617.2	0.000098
S	72	G72E	gGg	gAg	25	25	B.1.2	0.00022
S	72	G72E	gGg	gAg	24	24	B.1	0.00022
S	72	G72G	ggG	ggA	23	23	B.1.1.242	1
S	72	G72R	Ggg	Cgg	13	23	B.1.177	0.000171
S	72	G72R	Ggg	Agg	10	23	B.1.177	0.000132
S	72	G72G	ggG	ggA	13	23	B.1.617.2	0.000049
S	72	G72G	ggG	ggT	10	23	B.1.617.2	0.000038
S	72	G72E	gGg	gAg	23	23	P.1	0.000362
S	72	G72del	GGG	---	22	22	B.1.1	0.000399
S	72	G72del	GGG	---	20	20	AY.103	0.000124
S	72	G72del	GGG	---	20	20	AY.3	0.000199
S	72	G72R	Ggg	Agg	18	20	B.1.596	0.001568
S	72	G72R	Ggg	Cgg	2	20	B.1.596	0.000174
S	72	G72W	Ggg	Tgg	19	19	AY.103	0.000118
S	72	G72V	gGg	gTg	19	19	B.1.526	0.000447
S	72	G72del	GGG	---	18	18	AY.102	0.000477
S	72	G72G	ggG	ggA	17	17	AY.75	0.000952
S	72	G72G	ggG	ggA	9	17	B.1.177	0.000119
S	72	G72G	ggG	ggC	7	17	B.1.177	0.000092
S	72	G72G	ggG	ggT	1	17	B.1.177	0.000013
S	72	G72R	Ggg	Agg	14	17	B.1.617.2	0.000053
S	72	G72R	Ggg	Cgg	3	17	B.1.617.2	0.000011
S	72	G72R	Ggg	Agg	15	16	AY.43	0.000066
S	72	G72G	ggG	ggA	12	16	AY.43	0.000053
S	72	G72G	ggG	ggT	3	16	AY.43	0.000013
S	72	G72G	ggG	ggC	1	16	AY.43	0.000004
S	72	G72R	Ggg	Cgg	1	16	AY.43	0.000004
S	72	G72G	ggG	ggA	13	15	AY.29	0.000205
S	72	G72G	ggG	ggT	2	15	AY.29	0.000032
S	72	G72E	gGg	gAg	15	15	AY.44	0.000091
S	72	G72E	gGg	gAg	15	15	B.1.177.77	0.010893
S	72	G72R	Ggg	Agg	15	15	B.1.36	0.002189
S	72	G72G	ggG	ggA	15	15	P.1	0.000236
S	72	G72E	gGg	gAg	14	14	AY.102	0.000371
S	72	G72V	gGg	gTg	14	14	AY.45	0.001704
S	72	G72G	ggG	ggT	10	14	AY.5	0.000206
S	72	G72G	ggG	ggA	4	14	AY.5	0.000083
S	72	G72E	gGg	gAg	14	14	AY.9.2	0.000514
S	72	G72E	gGg	gAg	14	14	B.1.177	0.000184
S	72	G72V	gGg	gTg	13	13	AY.102	0.000345
S	72	G72V	gGg	gTg	13	13	AY.117	0.001099
S	72	G72G	ggG	ggA	8	13	AY.25	0.000048
S	72	G72G	ggG	ggT	5	13	AY.25	0.00003
S	72	G72E	gGg	gAg	13	13	AY.39	0.000321
S	72	G72V	gGg	gTg	13	13	AY.46.2	0.008259
S	72	G72E	gGg	gAg	12	12	AY.43	0.000053
S	72	G72W	Ggg	Tgg	12	12	AY.60	0.011257
S	72	G72G	ggG	ggA	12	12	B.1.1.519	0.000477
S	72	G72E	gGg	gAg	12	12	B.1.258	0.000799
S	72	G72G	ggG	ggA	12	12	B.1.610	0.042553
S	72	G72R	Ggg	Agg	11	11	AY.117	0.00093
S	72	G72V	gGg	gTg	11	11	AY.29	0.000174
S	72	G72E	gGg	gAg	11	11	AY.34.1	0.005609
S	72	G72del	GGG	---	11	11	AY.34.1	0.005609
S	72	G72G	ggG	ggA	11	11	B.1.1.214	0.00061
S	72	G72R	Ggg	Agg	11	11	B.1.139	0.008065
S	72	G72G	ggG	ggA	11	11	B.1.258.14	0.010784
S	72	G72del1	Ggg	-gg	6	10	All	0.000001
S	72	G72del1	GGG	-NN	3	10	All	0.000001
S	72	G72del1	ggG	gg-	1	10	All	0
S	72	G72V	gGg	gTg	10	10	AY.103	0.000062
S	72	G72G	ggG	ggT	6	10	AY.103	0.000037
S	72	G72G	ggG	ggA	3	10	AY.103	0.000019
S	72	G72G	ggG	ggC	1	10	AY.103	0.000006
S	72	G72del	GGG	---	10	10	AY.26	0.000283
S	72	G72R	Ggg	Agg	10	10	AY.3	0.000099
S	72	G72E	gGg	gAg	10	10	AY.3	0.000099
S	72	G72W	Ggg	Tgg	10	10	AY.4.2	0.000217
S	72	G72G	ggG	ggA	6	10	AY.44	0.000037
S	72	G72G	ggG	ggT	4	10	AY.44	0.000024
S	72	G72del	GGG	---	10	10	AY.5	0.000206
S	72	G72E	gGg	gAg	10	10	B.1.1.284	0.001074
S	72	G72W	Ggg	Tgg	9	9	AY.25	0.000054
S	72	G72E	gGg	gAg	9	9	AY.25	0.000054
S	72	G72V	gGg	gTg	9	9	AY.4.2	0.000195
S	72	G72G	ggG	ggA	8	9	AY.46.6	0.000578
S	72	G72G	ggG	ggT	1	9	AY.46.6	0.000072
S	72	G72E	gGg	gAg	9	9	AY.84	0.003937
S	72	G72R	Ggg	Agg	9	9	B.1	0.000082
S	72	G72R	Ggg	Agg	9	9	B.1.1.519	0.000357
S	72	G72del	GGG	---	9	9	B.1.177	0.000119
S	72	G72G	ggG	ggA	9	9	B.1.177.53	0.021531
S	72	G72E	gGg	gAg	9	9	B.1.351	0.000268
S	72	G72D	gGG	gAT	6	8	All	0.000001
S	72	G72D	gGG	gAC	2	8	All	0
S	72	G72A	gGg	gCg	8	8	AY.121	0.001083
S	72	G72E	gGg	gAg	8	8	AY.26	0.000226
S	72	G72V	gGg	gTg	8	8	AY.33	0.000534
S	72	G72del	GGG	---	8	8	AY.4.5	0.00086
S	72	G72del	GGG	---	8	8	AY.47	0.000249
S	72	G72E	gGg	gAg	8	8	AY.92	0.002298
S	72	G72del	GGG	---	8	8	B.1.177.86	0.001468
S	72	G72V	gGg	gTg	8	8	B.1.2	0.00007
S	72	G72E	gGg	gAg	8	8	B.1.427	0.000404
S	72	G72E	gGg	gAg	8	8	B.1.438.1	0.000858
S	72	G72del	GGG	---	7	7	AY.101	0.003433
S	72	G72E	gGg	gAg	7	7	AY.105	0.004502
S	72	G72del	GGG	---	7	7	AY.121	0.000947
S	72	G72V	gGg	gTg	7	7	AY.3	0.00007
S	72	G72V	gGg	gTg	7	7	AY.46.6	0.000505
S	72	G72R	Ggg	Agg	7	7	AY.6	0.000288
S	72	G72E	gGg	gAg	7	7	B.1.1	0.000127
S	72	G72R	Ggg	Agg	7	7	B.1.177.57	0.001967
S	72	G72E	gGg	gAg	7	7	B.1.280	0.05
S	72	G72del	GGG	---	7	7	B.1.429	0.000165
S	72	G72G	ggG	ggA	7	7	C.37	0.000812
S	72	G72E	gGg	gAg	7	7	C.37.1	0.018325
S	72	G72K	GGg	AAg	5	6	All	0.000001
S	72	G72K	GGG	AAA	1	6	All	0
S	72	G72R	Ggg	Agg	6	6	AY.102	0.000159
S	72	G72A	gGg	gCg	6	6	AY.102	0.000159
S	72	G72G	ggG	ggA	6	6	AY.119	0.000212
S	72	G72del	GGG	---	6	6	AY.33	0.000401
S	72	G72E	gGg	gAg	6	6	AY.34	0.000582
S	72	G72del	GGG	---	6	6	AY.42	0.000241
S	72	G72W	Ggg	Tgg	6	6	AY.42	0.000241
S	72	G72del	GGG	---	6	6	AY.45	0.00073
S	72	G72del	GGG	---	6	6	AY.98	0.000474
S	72	G72W	Ggg	Tgg	6	6	B.1.177	0.000079
S	72	G72V	gGg	gTg	6	6	B.1.177	0.000079
S	72	G72E	gGg	gAg	6	6	B.1.243	0.000418
S	72	G72G	ggG	ggT	4	6	B.1.427	0.000202
S	72	G72G	ggG	ggA	2	6	B.1.427	0.000101
S	72	G72G	ggG	ggT	5	6	B.1.466.2	0.001956
S	72	G72G	ggG	ggA	1	6	B.1.466.2	0.000391
S	72	G72del	GGG	---	6	6	P.1	0.000095
S	72	G72E	gGg	gAg	6	6	P.2	0.00112
S	72	G72N	GGG	AAT	5	5	All	0.000001
S	72	G72S	GgG	AgT	5	5	All	0.000001
S	72	G72W	Ggg	Tgg	5	5	AY.121	0.000677
S	72	G72E	gGg	gAg	5	5	AY.20	0.000194
S	72	G72G	ggG	ggA	4	5	AY.3	0.00004
S	72	G72G	ggG	ggT	1	5	AY.3	0.00001
S	72	G72W	Ggg	Tgg	5	5	AY.36	0.000741
S	72	G72del	GGG	---	5	5	AY.39	0.000124
S	72	G72R	Ggg	Agg	3	5	AY.44	0.000018
S	72	G72R	Ggg	Cgg	2	5	AY.44	0.000012
S	72	G72del	GGG	---	5	5	AY.46	0.00052
S	72	G72V	gGg	gTg	5	5	AY.6	0.000206
S	72	G72del	GGG	---	5	5	B	0.000639
S	72	G72V	gGg	gTg	5	5	B.1	0.000046
S	72	G72E	gGg	gAg	5	5	B.1.1.222	0.00102
S	72	G72E	gGg	gAg	5	5	B.1.1.519	0.000199
S	72	G72R	Ggg	Agg	5	5	B.1.160	0.000156
S	72	G72E	gGg	gAg	5	5	B.1.221	0.000355
S	72	G72G	ggG	ggA	5	5	B.1.239	0.006105
S	72	G72V	gGg	gTg	5	5	B.1.258	0.000333
S	72	G72R	Ggg	Agg	5	5	B.1.503	0.012438
S	72	G72A	gGg	gCg	5	5	B.1.617.2	0.000019
S	72	G72R	Ggg	Agg	5	5	P.1.14	0.000239
S	72	G72R	Ggg	Cgg	4	4	A.27	0.006623
S	72	G72del	GGG	---	4	4	AY.100	0.000184
S	72	G72E	gGg	gAg	4	4	AY.117	0.000338
S	72	G72del	GGG	---	4	4	AY.119	0.000141
S	72	G72V	gGg	gTg	4	4	AY.121	0.000541
S	72	G72V	gGg	gTg	4	4	AY.20	0.000155
S	72	G72R	Ggg	Agg	3	4	AY.26	0.000085
S	72	G72R	Ggg	Cgg	1	4	AY.26	0.000028
S	72	G72G	ggG	ggA	4	4	AY.39.1	0.000158
S	72	G72E	gGg	gAg	4	4	AY.4.2.1	0.000596
S	72	G72V	gGg	gTg	4	4	AY.41	0.001176
S	72	G72R	Ggg	Agg	4	4	AY.42	0.000161
S	72	G72R	Ggg	Agg	4	4	AY.46.6	0.000289
S	72	G72R	Ggg	Agg	2	4	AY.5	0.000041
S	72	G72R	Ggg	Cgg	2	4	AY.5	0.000041
S	72	G72V	gGg	gTg	4	4	AY.9.1	0.000335
S	72	G72del	GGG	---	4	4	AY.9.2	0.000147
S	72	G72del	GGG	---	4	4	AY.99.2	0.000369
S	72	G72G	ggG	ggA	4	4	B	0.000511
S	72	G72R	Ggg	Agg	4	4	B.1.1	0.000073
S	72	G72E	gGg	gAg	4	4	B.1.1.306	0.001754
S	72	G72N	GGG	AAT	4	4	B.1.1.7	0.000004
S	72	G72S	GgG	AgT	4	4	B.1.1.7	0.000004
S	72	G72D	gGG	gAT	4	4	B.1.1.7	0.000004
S	72	G72K	GGg	AAg	4	4	B.1.1.7	0.000004
S	72	G72V	gGg	gTg	4	4	B.1.1.70	0.001364
S	72	G72del	GGG	---	4	4	B.1.108	0.023256
S	72	G72del	GGG	---	4	4	B.1.221	0.000284
S	72	G72G	ggG	ggA	3	4	B.1.221	0.000213
S	72	G72G	ggG	ggT	1	4	B.1.221	0.000071
S	72	G72E	gGg	gAg	4	4	B.1.336	0.009756
S	72	G72R	Ggg	Agg	4	4	B.1.525	0.000453
S	72	G72E	gGg	gAg	4	4	B.1.526	0.000094
S	72	G72W	Ggg	Tgg	4	4	P.1.14	0.000191
S	72	G72E	gGg	gAg	3	3	AY.100	0.000138
S	72	G72G	ggG	ggT	2	3	AY.100	0.000092
S	72	G72G	ggG	ggA	1	3	AY.100	0.000046
S	72	G72G	ggG	ggA	2	3	AY.102	0.000053
S	72	G72G	ggG	ggT	1	3	AY.102	0.000027
S	72	G72V	gGg	gTg	3	3	AY.111	0.000549
S	72	G72del	GGG	---	3	3	AY.113	0.000427
S	72	G72del	GGG	---	3	3	AY.118	0.000188
S	72	G72del	GGG	---	3	3	AY.12	0.000948
S	72	G72del	GGG	---	3	3	AY.20	0.000117
S	72	G72W	Ggg	Tgg	3	3	AY.20	0.000117
S	72	G72R	Ggg	Agg	3	3	AY.20	0.000117
S	72	G72V	gGg	gTg	3	3	AY.26	0.000085
S	72	G72R	Ggg	Agg	3	3	AY.29	0.000047
S	72	G72G	ggG	ggA	3	3	AY.3.1	0.000256
S	72	G72del	GGG	---	3	3	AY.3.1	0.000256
S	72	G72E	gGg	gAg	3	3	AY.32	0.001597
S	72	G72del	GGG	---	3	3	AY.38	0.001498
S	72	G72R	Ggg	Agg	2	3	AY.39	0.000049
S	72	G72R	Ggg	Cgg	1	3	AY.39	0.000025
S	72	G72del	GGG	---	3	3	AY.39.1	0.000119
S	72	G72E	gGg	gAg	3	3	AY.39.1	0.000119
S	72	G72G	ggG	ggA	3	3	AY.42	0.000121
S	72	G72E	gGg	gAg	3	3	AY.54	0.000286
S	72	G72del	GGG	---	3	3	AY.54	0.000286
S	72	G72R	Ggg	Agg	3	3	AY.59	0.001589
S	72	G72del	GGG	---	3	3	AY.61	0.000314
S	72	G72del	GGG	---	3	3	AY.75	0.000168
S	72	G72V	gGg	gTg	3	3	AY.75.1	0.000541
S	72	G72E	gGg	gAg	3	3	AY.85	0.001282
S	72	G72del	GGG	---	3	3	AY.85	0.001282
S	72	G72E	gGg	gAg	3	3	AY.98	0.000237
S	72	G72G	ggG	ggA	3	3	AY.98	0.000237
S	72	G72del	GGG	---	3	3	AY.98.1	0.000145
S	72	G72W	Ggg	Tgg	3	3	B.1.1	0.000054
S	72	G72E	gGg	gAg	3	3	B.1.1.297	0.006711
S	72	G72G	ggG	ggT	2	3	B.1.1.416	0.00181
S	72	G72G	ggG	ggA	1	3	B.1.1.416	0.000905
S	72	G72V	gGg	gTg	3	3	B.1.1.519	0.000119
S	72	G72G	ggG	ggA	3	3	B.1.143	0.06383
S	72	G72E	gGg	gAg	3	3	B.1.160	0.000094
S	72	G72del	GGG	---	3	3	B.1.160	0.000094
S	72	G72V	gGg	gTg	3	3	B.1.177.57	0.000843
S	72	G72V	gGg	gTg	3	3	B.1.243	0.000209
S	72	G72del	GGG	---	3	3	B.1.258	0.0002
S	72	G72R	Ggg	Agg	3	3	B.1.351	0.000089
S	72	G72V	gGg	gTg	3	3	B.1.351	0.000089
S	72	G72V	gGg	gTg	3	3	B.1.351.3	0.002629
S	72	G72E	gGg	gAg	3	3	B.1.36	0.000438
S	72	G72E	gGg	gAg	3	3	B.1.380	0.019868
S	72	G72G	ggG	ggT	3	3	B.1.425	0.008982
S	72	G72E	gGg	gAg	3	3	B.1.429	0.000071
S	72	G72R	Ggg	Agg	3	3	B.1.429	0.000071
S	72	G72G	ggG	ggA	3	3	B.1.429	0.000071
S	72	G72W	Ggg	Tgg	3	3	B.1.525	0.000339
S	72	G72del	GGG	---	3	3	B.1.525	0.000339
S	72	G72G	ggG	ggA	2	3	B.1.526	0.000047
S	72	G72G	ggG	ggT	1	3	B.1.526	0.000024
S	72	G72G	ggG	ggA	2	3	B.1.596	0.000174
S	72	G72G	ggG	ggT	1	3	B.1.596	0.000087
S	72	G72R	Ggg	Agg	3	3	B.1.637	0.000219
S	72	G72E	gGg	gAg	3	3	B.3	0.002492
S	72	G72R	Ggg	Agg	3	3	C.37	0.000348
S	72	G72del	GGG	---	3	3	P.1.12	0.001452
S	72	G72E	gGg	gAg	3	3	R.1	0.00027
S	72	G72del	GGG	---	2	2		0.111111
S	72	G72del	GGG	---	2	2	A	0.000774
S	72	G72L	GGg	CTg	2	2	All	0
S	72	G72P	GGg	CCg	2	2	All	0
S	72	G72Q	GGg	CAg	2	2	All	0
S	72	G72W	Ggg	Tgg	2	2	AY.100	0.000092
S	72	G72W	Ggg	Tgg	2	2	AY.102	0.000053
S	72	G72del	GGG	---	2	2	AY.108	0.002205
S	72	G72del	GGG	---	2	2	AY.111	0.000366
S	72	G72del	GGG	---	2	2	AY.117	0.000169
S	72	G72G	ggG	ggA	2	2	AY.14	0.000176
S	72	G72V	gGg	gTg	2	2	AY.23	0.000139
S	72	G72E	gGg	gAg	2	2	AY.29	0.000032
S	72	G72W	Ggg	Tgg	2	2	AY.3	0.00002
S	72	G72D	gGG	gAC	1	2	AY.3	0.00001
S	72	G72D	gGG	gAT	1	2	AY.3	0.00001
S	72	G72del	GGG	---	2	2	AY.30	0.000791
S	72	G72V	gGg	gTg	2	2	AY.34	0.000194
S	72	G72G	ggG	ggA	2	2	AY.4.2	0.000043
S	72	G72E	gGg	gAg	2	2	AY.42	0.00008
S	72	G72del1	ggG	gg-	1	2	AY.43	0.000004
S	72	G72del1	GGG	-NN	1	2	AY.43	0.000004
S	72	G72W	Ggg	Tgg	2	2	AY.44	0.000012
S	72	G72E	gGg	gAg	2	2	AY.46	0.000208
S	72	G72G	ggG	ggA	2	2	AY.46.2	0.001271
S	72	G72E	gGg	gAg	2	2	AY.47	0.000062
S	72	G72V	gGg	gTg	2	2	AY.5	0.000041
S	72	G72del	GGG	---	2	2	AY.52	0.001629
S	72	G72W	Ggg	Tgg	2	2	AY.6	0.000082
S	72	G72del	GGG	---	2	2	AY.6	0.000082
S	72	G72E	gGg	gAg	2	2	AY.6	0.000082
S	72	G72E	gGg	gAg	2	2	AY.61	0.00021
S	72	G72V	gGg	gTg	2	2	AY.61	0.00021
S	72	G72G	ggG	ggT	2	2	AY.61	0.00021
S	72	G72V	gGg	gTg	2	2	AY.64	0.00119
S	72	G72A	gGg	gCg	2	2	AY.67	0.000929
S	72	G72E	gGg	gAg	2	2	AY.69	0.000373
S	72	G72V	gGg	gTg	2	2	AY.7	0.000392
S	72	G72G	ggG	ggA	1	2	AY.7	0.000196
S	72	G72G	ggG	ggT	1	2	AY.7	0.000196
S	72	G72del	GGG	---	2	2	AY.7.2	0.001119
S	72	G72V	gGg	gTg	2	2	AY.70	0.000417
S	72	G72del	GGG	---	2	2	AY.71	0.00095
S	72	G72del	GGG	---	2	2	AY.75.1	0.000361
S	72	G72V	gGg	gTg	2	2	AY.86	0.00166
S	72	G72V	gGg	gTg	2	2	AY.9	0.000135
S	72	G72G	ggG	ggT	2	2	AY.9	0.000135
S	72	G72del	GGG	---	2	2	AY.9.1	0.000167
S	72	G72G	ggG	ggT	1	2	AY.9.2	0.000037
S	72	G72G	ggG	ggA	1	2	AY.9.2	0.000037
S	72	G72del	GGG	---	2	2	AY.94	0.000885
S	72	G72V	gGg	gTg	2	2	AY.98	0.000158
S	72	G72W	Ggg	Tgg	2	2	AY.99.2	0.000184
S	72	G72R	Ggg	Cgg	2	2	B.1.1.101	0.02
S	72	G72V	gGg	gTg	2	2	B.1.1.263	0.003115
S	72	G72G	ggG	ggT	1	2	B.1.1.311	0.000358
S	72	G72G	ggG	ggA	1	2	B.1.1.311	0.000358
S	72	G72V	gGg	gTg	2	2	B.1.1.318	0.000604
S	72	G72R	Ggg	Agg	2	2	B.1.1.526	0.007092
S	72	G72G	ggG	ggA	1	2	B.1.160	0.000031
S	72	G72G	ggG	ggT	1	2	B.1.160	0.000031
S	72	G72E	gGg	gAg	2	2	B.1.177.42	0.001789
S	72	G72R	Ggg	Agg	2	2	B.1.177.50	0.00939
S	72	G72del	GGG	---	2	2	B.1.177.56	0.001335
S	72	G72G	ggG	ggA	2	2	B.1.177.7	0.00033
S	72	G72E	gGg	gAg	2	2	B.1.177.7	0.00033
S	72	G72R	Ggg	Agg	2	2	B.1.177.77	0.001452
S	72	G72del	GGG	---	2	2	B.1.177.81	0.000379
S	72	G72E	gGg	gAg	2	2	B.1.177.86	0.000367
S	72	G72E	gGg	gAg	2	2	B.1.177.87	0.001456
S	72	G72del	GGG	---	2	2	B.1.179	0.007519
S	72	G72del	GGG	---	2	2	B.1.2	0.000018
S	72	G72G	ggG	ggA	2	2	B.1.210	0.004264
S	72	G72R	Ggg	Agg	2	2	B.1.221	0.000142
S	72	G72E	gGg	gAg	2	2	B.1.232	0.001075
S	72	G72G	ggG	ggA	2	2	B.1.240	0.000431
S	72	G72R	Ggg	Agg	2	2	B.1.279	0.001027
S	72	G72E	gGg	gAg	2	2	B.1.279	0.001027
S	72	G72del	GGG	---	2	2	B.1.351	0.000059
S	72	G72R	Ggg	Agg	2	2	B.1.356	0.003454
S	72	G72E	gGg	gAg	2	2	B.1.36.22	0.002415
S	72	G72E	gGg	gAg	2	2	B.1.397	0.009709
S	72	G72G	ggG	ggT	2	2	B.1.523	0.004902
S	72	G72E	gGg	gAg	2	2	B.1.525	0.000226
S	72	G72W	Ggg	Tgg	2	2	B.1.526	0.000047
S	72	G72R	Ggg	Cgg	2	2	B.1.541	0.00885
S	72	G72V	gGg	gTg	2	2	B.1.556	0.015038
S	72	G72R	Ggg	Agg	2	2	B.1.561	0.000794
S	72	G72E	gGg	gAg	2	2	B.1.576	0.001813
S	72	G72G	ggG	ggT	1	2	B.1.617.1	0.000129
S	72	G72G	ggG	ggA	1	2	B.1.617.1	0.000129
S	72	G72G	ggG	ggA	2	2	B.1.621	0.000177
S	72	G72V	gGg	gTg	2	2	B.1.621	0.000177
S	72	G72E	gGg	gAg	2	2	B.1.637	0.000146
S	72	G72E	gGg	gAg	2	2	B.40	0.000729
S	72	G72W	Ggg	Tgg	2	2	B.55	0.0059
S	72	G72R	Ggg	Agg	2	2	C.16	0.002121
S	72	G72G	ggG	ggT	2	2	D.2	0.00015
S	72	G72V	gGg	gTg	2	2	P.1	0.000032
S	72	G72W	Ggg	Tgg	2	2	P.1	0.000032
S	72	G72R	Ggg	Agg	1	2	P.1.15	0.000232
S	72	G72R	GgG	AgA	1	2	P.1.15	0.000232
S	72	G72E	gGg	gAg	2	2	Q.8	0.00033
S	72	G72del	GGG	---	2	2	R.1	0.00018
S	72	G72W	Ggg	Tgg	1	1		0.055556
S	72	G72R	Ggg	Agg	1	1	A	0.000387
S	72	G72E	gGg	gAg	1	1	A	0.000387
S	72	G72E	gGg	gAg	1	1	A.1	0.000282
S	72	G72H	GGG	CAC	1	1	All	0
S	72	G72X	GGG	TAA	1	1	All	0
S	72	G72del2	GGg	--g	1	1	All	0
S	72	G72T	GGG	ACT	1	1	All	0
S	72	G72F	GGG	TTT	1	1	All	0
S	72	G72C	GgG	TgT	1	1	All	0
S	72	G72V	gGg	gTg	1	1	AU.3	0.00211
S	72	G72R	Ggg	Agg	1	1	AY.1	0.000396
S	72	G72A	gGG	gCT	1	1	AY.100	0.000046
S	72	G72V	gGg	gTg	1	1	AY.100	0.000046
S	72	G72del1	GGG	-NN	1	1	AY.100	0.000046
S	72	G72Q	GGg	CAg	1	1	AY.103	0.000006
S	72	G72H	GGG	CAC	1	1	AY.103	0.000006
S	72	G72D	gGG	gAC	1	1	AY.103	0.000006
S	72	G72del	GGG	---	1	1	AY.105	0.000643
S	72	G72A	gGg	gCg	1	1	AY.106	0.000335
S	72	G72V	gGG	gTT	1	1	AY.109	0.00074
S	72	G72V	gGg	gTg	1	1	AY.11	0.001339
S	72	G72W	Ggg	Tgg	1	1	AY.110	0.000113
S	72	G72V	gGg	gTg	1	1	AY.110	0.000113
S	72	G72R	Ggg	Agg	1	1	AY.113	0.000142
S	72	G72V	gGg	gTg	1	1	AY.116	0.000287
S	72	G72V	gGg	gTg	1	1	AY.116.1	0.000311
S	72	G72R	Ggg	Agg	1	1	AY.116.1	0.000311
S	72	G72E	gGg	gAg	1	1	AY.116.1	0.000311
S	72	G72V	gGg	gTg	1	1	AY.118	0.000063
S	72	G72V	gGg	gTg	1	1	AY.119	0.000035
S	72	G72V	gGg	gTg	1	1	AY.12	0.000316
S	72	G72V	gGg	gTg	1	1	AY.120	0.000037
S	72	G72A	gGg	gCg	1	1	AY.120	0.000037
S	72	G72G	ggG	ggT	1	1	AY.120	0.000037
S	72	G72del	GGG	---	1	1	AY.120	0.000037
S	72	G72E	gGg	gAg	1	1	AY.120	0.000037
S	72	G72V	gGg	gTg	1	1	AY.120.1	0.000321
S	72	G72W	Ggg	Tgg	1	1	AY.13	0.000161
S	72	G72R	Ggg	Agg	1	1	AY.13	0.000161
S	72	G72V	gGg	gTg	1	1	AY.14	0.000088
S	72	G72R	Ggg	Cgg	1	1	AY.14	0.000088
S	72	G72G	ggG	ggA	1	1	AY.19	0.00114
S	72	G72E	gGg	gAg	1	1	AY.2	0.000356
S	72	G72V	gGg	gTg	1	1	AY.2	0.000356
S	72	G72G	ggG	ggT	1	1	AY.20	0.000039
S	72	G72R	Ggg	Agg	1	1	AY.23	0.00007
S	72	G72E	gGg	gAg	1	1	AY.23.1	0.000417
S	72	G72del	GGG	---	1	1	AY.24	0.000431
S	72	G72G	ggG	ggA	1	1	AY.24	0.000431
S	72	G72W	Ggg	Tgg	1	1	AY.26	0.000028
S	72	G72E	gGg	gAg	1	1	AY.27	0.000065
S	72	G72W	Ggg	Tgg	1	1	AY.29	0.000016
S	72	G72del	GGG	---	1	1	AY.29	0.000016
S	72	G72V	gGg	gTg	1	1	AY.29.1	0.000221
S	72	G72A	gGg	gCg	1	1	AY.3.1	0.000085
S	72	G72V	gGg	gTg	1	1	AY.3.1	0.000085
S	72	G72R	Ggg	Agg	1	1	AY.33	0.000067
S	72	G72G	ggG	ggT	1	1	AY.34	0.000097
S	72	G72del	GGG	---	1	1	AY.34	0.000097
S	72	G72V	gGg	gTg	1	1	AY.37	0.000316
S	72	G72W	Ggg	Tgg	1	1	AY.39	0.000025
S	72	G72G	ggG	ggT	1	1	AY.39	0.000025
S	72	G72V	gGg	gTg	1	1	AY.39	0.000025
S	72	G72W	Ggg	Tgg	1	1	AY.39.1	0.00004
S	72	G72R	Ggg	Agg	1	1	AY.39.2	0.001541
S	72	G72del	GGG	---	1	1	AY.39.2	0.001541
S	72	G72del2	GGg	--g	1	1	AY.4	0.000002
S	72	G72L	GGg	CTg	1	1	AY.4	0.000002
S	72	G72del	GGG	---	1	1	AY.4.2	0.000022
S	72	G72R	Ggg	Agg	1	1	AY.4.2	0.000022
S	72	G72del	GGG	---	1	1	AY.4.2.1	0.000149
S	72	G72del	GGG	---	1	1	AY.4.4	0.000409
S	72	G72E	gGg	gAg	1	1	AY.4.5	0.000107
S	72	G72W	Ggg	Tgg	1	1	AY.41	0.000294
S	72	G72V	gGg	gTg	1	1	AY.42	0.00004
S	72	G72R	Ggg	Agg	1	1	AY.45	0.000122
S	72	G72G	ggG	ggT	1	1	AY.46	0.000104
S	72	G72E	gGg	gAg	1	1	AY.46.2	0.000635
S	72	G72del	GGG	---	1	1	AY.46.5	0.000198
S	72	G72del	GGG	---	1	1	AY.46.6	0.000072
S	72	G72E	gGg	gAg	1	1	AY.46.6	0.000072
S	72	G72G	ggG	ggT	1	1	AY.47	0.000031
S	72	G72R	Ggg	Agg	1	1	AY.47	0.000031
S	72	G72X	GGG	TAA	1	1	AY.48	0.000465
S	72	G72E	gGg	gAg	1	1	AY.5	0.000021
S	72	G72V	gGg	gTg	1	1	AY.5.3	0.000337
S	72	G72K	GGG	AAA	1	1	AY.5.3	0.000337
S	72	G72del	GGG	---	1	1	AY.5.3	0.000337
S	72	G72del	GGG	---	1	1	AY.5.4	0.000277
S	72	G72V	gGg	gTg	1	1	AY.51	0.000909
S	72	G72W	Ggg	Tgg	1	1	AY.53	0.000288
S	72	G72G	ggG	ggA	1	1	AY.55	0.000917
S	72	G72E	gGg	gAg	1	1	AY.59	0.00053
S	72	G72G	ggG	ggA	1	1	AY.59	0.00053
S	72	G72G	ggG	ggA	1	1	AY.6	0.000041
S	72	G72del	GGG	---	1	1	AY.60	0.000938
S	72	G72V	gGg	gTg	1	1	AY.60	0.000938
S	72	G72W	Ggg	Tgg	1	1	AY.61	0.000105
S	72	G72del	GGG	---	1	1	AY.64	0.000595
S	72	G72G	ggG	ggA	1	1	AY.67	0.000464
S	72	G72del	GGG	---	1	1	AY.67	0.000464
S	72	G72W	Ggg	Tgg	1	1	AY.67	0.000464
S	72	G72del1	Ggg	-gg	1	1	AY.68	0.000274
S	72	G72del	GGG	---	1	1	AY.68	0.000274
S	72	G72G	ggG	ggA	1	1	AY.69	0.000187
S	72	G72del	GGG	---	1	1	AY.70	0.000209
S	72	G72E	gGg	gAg	1	1	AY.71	0.000475
S	72	G72del	GGG	---	1	1	AY.72	0.001361
S	72	G72del	GGG	---	1	1	AY.73	0.000665
S	72	G72G	ggG	ggA	1	1	AY.73	0.000665
S	72	G72del	GGG	---	1	1	AY.74	0.000116
S	72	G72V	gGg	gTg	1	1	AY.75	0.000056
S	72	G72R	Ggg	Agg	1	1	AY.76	0.004831
S	72	G72R	Ggg	Agg	1	1	AY.77	0.001127
S	72	G72del1	Ggg	-gg	1	1	AY.79	0.001211
S	72	G72del	GGG	---	1	1	AY.84	0.000437
S	72	G72G	ggG	ggA	1	1	AY.84	0.000437
S	72	G72R	Ggg	Agg	1	1	AY.84	0.000437
S	72	G72V	gGg	gTg	1	1	AY.85	0.000427
S	72	G72A	gGG	gCT	1	1	AY.85	0.000427
S	72	G72Q	GGg	CAg	1	1	AY.85	0.000427
S	72	G72E	gGg	gAg	1	1	AY.89	0.004902
S	72	G72E	gGg	gAg	1	1	AY.9	0.000068
S	72	G72V	gGg	gTg	1	1	AY.9.2	0.000037
S	72	G72V	gGg	gTg	1	1	AY.91	0.00073
S	72	G72V	gGg	gTg	1	1	AY.92	0.000287
S	72	G72G	ggG	ggA	1	1	AY.93	0.000273
S	72	G72W	Ggg	Tgg	1	1	AY.93	0.000273
S	72	G72R	Ggg	Agg	1	1	AY.98.1	0.000048
S	72	G72W	Ggg	Tgg	1	1	AY.98.1	0.000048
S	72	G72del	GGG	---	1	1	AY.99	0.001049
S	72	G72E	gGg	gAg	1	1	AY.99.2	0.000092
S	72	G72V	gGg	gTg	1	1	AY.99.2	0.000092
S	72	G72V	gGg	gTg	1	1	AZ.2	0.000821
S	72	G72del	GGG	---	1	1	AZ.2	0.000821
S	72	G72R	Ggg	Agg	1	1	B	0.000128
S	72	G72E	gGg	gAg	1	1	B	0.000128
S	72	G72del1	Ggg	-gg	1	1	B.1	0.000009
S	72	G72W	Ggg	Tgg	1	1	B.1	0.000009
S	72	G72V	gGg	gTg	1	1	B.1.1	0.000018
S	72	G72del	GGG	---	1	1	B.1.1.118	0.010204
S	72	G72G	ggG	ggA	1	1	B.1.1.128	0.007092
S	72	G72G	ggG	ggA	1	1	B.1.1.141	0.002012
S	72	G72V	gGg	gTg	1	1	B.1.1.148	0.008772
S	72	G72del	GGG	---	1	1	B.1.1.148	0.008772
S	72	G72E	gGg	gAg	1	1	B.1.1.172	0.018182
S	72	G72G	ggG	ggA	1	1	B.1.1.216	0.00089
S	72	G72del	GGG	---	1	1	B.1.1.216	0.00089
S	72	G72R	Ggg	Agg	1	1	B.1.1.222	0.000204
S	72	G72V	gGg	gTg	1	1	B.1.1.269	0.001353
S	72	G72G	ggG	ggT	1	1	B.1.1.277	0.000759
S	72	G72P	GGg	CCg	1	1	B.1.1.28	0.000311
S	72	G72A	gGg	gCg	1	1	B.1.1.28	0.000311
S	72	G72R	Ggg	Cgg	1	1	B.1.1.28	0.000311
S	72	G72R	Ggg	Agg	1	1	B.1.1.301	0.001179
S	72	G72E	gGg	gAg	1	1	B.1.1.301	0.001179
S	72	G72R	Ggg	Agg	1	1	B.1.1.306	0.000438
S	72	G72del	GGG	---	1	1	B.1.1.306	0.000438
S	72	G72G	ggG	ggA	1	1	B.1.1.309	0.005848
S	72	G72E	gGg	gAg	1	1	B.1.1.311	0.000358
S	72	G72del	GGG	---	1	1	B.1.1.311	0.000358
S	72	G72R	Ggg	Agg	1	1	B.1.1.311	0.000358
S	72	G72del	GGG	---	1	1	B.1.1.315	0.008475
S	72	G72del	GGG	---	1	1	B.1.1.318	0.000302
S	72	G72A	gGg	gCg	1	1	B.1.1.326	0.001761
S	72	G72R	Ggg	Agg	1	1	B.1.1.329	0.003846
S	72	G72G	ggG	ggA	1	1	B.1.1.333	0.001076
S	72	G72G	ggG	ggC	1	1	B.1.1.348	0.000796
S	72	G72R	Ggg	Agg	1	1	B.1.1.369	0.000446
S	72	G72E	gGg	gAg	1	1	B.1.1.37	0.000193
S	72	G72E	gGg	gAg	1	1	B.1.1.374	0.002375
S	72	G72V	gGg	gTg	1	1	B.1.1.389	0.006061
S	72	G72E	gGg	gAg	1	1	B.1.1.39	0.00051
S	72	G72R	Ggg	Agg	1	1	B.1.1.405	0.083333
S	72	G72del	GGG	---	1	1	B.1.1.434	0.000349
S	72	G72del	GGG	---	1	1	B.1.1.523	0.001563
S	72	G72del1	Ggg	-gg	1	1	B.1.1.7	0.000001
S	72	G72F	GGG	TTT	1	1	B.1.1.7	0.000001
S	72	G72C	GgG	TgT	1	1	B.1.1.7	0.000001
S	72	G72del	GGG	---	1	1	B.1.1.70	0.000341
S	72	G72G	ggG	ggT	1	1	B.1.1.8	0.003584
S	72	G72W	Ggg	Tgg	1	1	B.1.160	0.000031
S	72	G72E	gGg	gAg	1	1	B.1.160.17	0.001701
S	72	G72del	GGG	---	1	1	B.1.160.32	0.004292
S	72	G72A	gGg	gCg	1	1	B.1.177	0.000013
S	72	G72E	gGg	gAg	1	1	B.1.177.12	0.000152
S	72	G72G	ggG	ggA	1	1	B.1.177.12	0.000152
S	72	G72del	GGG	---	1	1	B.1.177.16	0.000664
S	72	G72E	gGg	gAg	1	1	B.1.177.17	0.000821
S	72	G72V	gGg	gTg	1	1	B.1.177.17	0.000821
S	72	G72del	GGG	---	1	1	B.1.177.17	0.000821
S	72	G72del	GGG	---	1	1	B.1.177.18	0.00116
S	72	G72R	Ggg	Agg	1	1	B.1.177.21	0.000076
S	72	G72del	GGG	---	1	1	B.1.177.21	0.000076
S	72	G72V	gGg	gTg	1	1	B.1.177.35	0.000691
S	72	G72G	ggG	ggA	1	1	B.1.177.35	0.000691
S	72	G72E	gGg	gAg	1	1	B.1.177.35	0.000691
S	72	G72R	Ggg	Agg	1	1	B.1.177.4	0.000211
S	72	G72del	GGG	---	1	1	B.1.177.4	0.000211
S	72	G72V	gGg	gTg	1	1	B.1.177.42	0.000894
S	72	G72R	Ggg	Agg	1	1	B.1.177.43	0.001477
S	72	G72E	gGg	gAg	1	1	B.1.177.44	0.000519
S	72	G72E	gGg	gAg	1	1	B.1.177.5	0.001242
S	72	G72del	GGG	---	1	1	B.1.177.51	0.004566
S	72	G72E	gGg	gAg	1	1	B.1.177.60	0.000218
S	72	G72V	gGg	gTg	1	1	B.1.177.73	0.000566
S	72	G72G	ggG	ggA	1	1	B.1.177.75	0.001041
S	72	G72del	GGG	---	1	1	B.1.177.77	0.000726
S	72	G72V	gGg	gTg	1	1	B.1.177.8	0.000752
S	72	G72V	gGg	gTg	1	1	B.1.177.81	0.000189
S	72	G72del	GGG	---	1	1	B.1.177.83	0.001481
S	72	G72R	Ggg	Agg	1	1	B.1.177.85	0.005435
S	72	G72L	GGg	CTg	1	1	B.1.2	0.000009
S	72	G72del1	Ggg	-gg	1	1	B.1.2	0.000009
S	72	G72del	GGG	---	1	1	B.1.214	0.003663
S	72	G72G	ggG	ggA	1	1	B.1.232	0.000537
S	72	G72W	Ggg	Tgg	1	1	B.1.234	0.000132
S	72	G72del	GGG	---	1	1	B.1.239	0.001221
S	72	G72E	gGg	gAg	1	1	B.1.241	0.000812
S	72	G72A	gGg	gCg	1	1	B.1.243	0.00007
S	72	G72W	Ggg	Tgg	1	1	B.1.258	0.000067
S	72	G72R	Ggg	Agg	1	1	B.1.258	0.000067
S	72	G72G	ggG	ggA	1	1	B.1.258	0.000067
S	72	G72R	Ggg	Agg	1	1	B.1.258.17	0.000104
S	72	G72A	gGg	gCg	1	1	B.1.260	0.003344
S	72	G72W	Ggg	Tgg	1	1	B.1.311	0.000275
S	72	G72V	gGg	gTg	1	1	B.1.311	0.000275
S	72	G72R	Ggg	Agg	1	1	B.1.324	0.001605
S	72	G72E	gGg	gAg	1	1	B.1.351.5	0.0006
S	72	G72G	ggG	ggA	1	1	B.1.36	0.000146
S	72	G72V	gGg	gTg	1	1	B.1.36.16	0.001425
S	72	G72V	gGg	gTg	1	1	B.1.36.17	0.000494
S	72	G72R	Ggg	Agg	1	1	B.1.36.18	0.00042
S	72	G72G	ggG	ggC	1	1	B.1.36.27	0.000763
S	72	G72V	gGg	gTg	1	1	B.1.367	0.000792
S	72	G72E	gGg	gAg	1	1	B.1.369	0.000285
S	72	G72del	GGG	---	1	1	B.1.391	0.001127
S	72	G72G	ggG	ggA	1	1	B.1.408	0.00369
S	72	G72V	gGg	gTg	1	1	B.1.426	0.001009
S	72	G72del	GGG	---	1	1	B.1.427	0.00005
S	72	G72V	gGg	gTg	1	1	B.1.427	0.00005
S	72	G72V	gGg	gTg	1	1	B.1.429	0.000024
S	72	G72W	Ggg	Tgg	1	1	B.1.429	0.000024
S	72	G72V	gGg	gTg	1	1	B.1.466.2	0.000391
S	72	G72G	ggG	ggA	1	1	B.1.497	0.000315
S	72	G72A	gGg	gCg	1	1	B.1.500	0.052632
S	72	G72W	Ggg	Tgg	1	1	B.1.509	0.000866
S	72	G72T	GGG	ACT	1	1	B.1.525	0.000113
S	72	G72E	gGg	gAg	1	1	B.1.527	0.003704
S	72	G72W	Ggg	Tgg	1	1	B.1.559	0.025
S	72	G72W	Ggg	Tgg	1	1	B.1.564	0.000426
S	72	G72E	gGg	gAg	1	1	B.1.565	0.00081
S	72	G72G	ggG	ggA	1	1	B.1.567	0.003333
S	72	G72A	gGg	gCg	1	1	B.1.580	0.004065
S	72	G72E	gGg	gAg	1	1	B.1.596	0.000087
S	72	G72del	GGG	---	1	1	B.1.596	0.000087
S	72	G72G	ggG	ggA	1	1	B.1.609	0.000479
S	72	G72E	gGg	gAg	1	1	B.1.612	0.002653
S	72	G72E	gGg	gAg	1	1	B.1.617.1	0.000129
S	72	G72del1	Ggg	-gg	1	1	B.1.617.2	0.000004
S	72	G72del	GGG	---	1	1	B.1.620	0.000946
S	72	G72G	ggG	ggA	1	1	B.1.620	0.000946
S	72	G72del	GGG	---	1	1	B.1.621	0.000089
S	72	G72R	Ggg	Agg	1	1	B.1.621	0.000089
S	72	G72E	gGg	gAg	1	1	B.1.621	0.000089
S	72	G72R	Ggg	Agg	1	1	B.1.623	0.000536
S	72	G72E	gGg	gAg	1	1	B.1.625	0.002353
S	72	G72D	gGG	gAT	1	1	B.1.625	0.002353
S	72	G72R	Ggg	Agg	1	1	B.1.625	0.002353
S	72	G72K	GGg	AAg	1	1	B.1.625	0.002353
S	72	G72G	ggG	ggT	1	1	B.1.625	0.002353
S	72	G72N	GGG	AAT	1	1	B.1.625	0.002353
S	72	G72S	GgG	AgT	1	1	B.1.625	0.002353
S	72	G72G	ggG	ggA	1	1	B.1.627	0.00202
S	72	G72del	GGG	---	1	1	B.1.637	0.000073
S	72	G72E	gGg	gAg	1	1	B.1.8	0.001972
S	72	G72R	Ggg	Cgg	1	1	B.11	0.005128
S	72	G72R	Ggg	Agg	1	1	B.39	0.002331
S	72	G72G	ggG	ggA	1	1	B.41	0.008
S	72	G72R	Ggg	Agg	1	1	B.6.6	0.000889
S	72	G72G	ggG	ggA	1	1	C.16	0.00106
S	72	G72del	GGG	---	1	1	C.35	0.000774
S	72	G72del	GGG	---	1	1	C.36.3	0.000567
S	72	G72V	gGg	gTg	1	1	C.36.3.1	0.002717
S	72	G72W	Ggg	Tgg	1	1	C.37	0.000116
S	72	G72del1	GGG	-NN	1	1	C.37	0.000116
S	72	G72E	gGg	gAg	1	1	D.2	0.000075
S	72	G72A	gGg	gCg	1	1	D.2	0.000075
S	72	G72R	Ggg	Cgg	1	1	D.2	0.000075
S	72	G72V	gGg	gTg	1	1	D.2	0.000075
S	72	G72A	gGg	gCg	1	1	P.1	0.000016
S	72	G72R	Ggg	Agg	1	1	P.1	0.000016
S	72	G72del	GGG	---	1	1	P.1.1	0.000318
S	72	G72V	gGg	gTg	1	1	P.1.10	0.000269
S	72	G72del	GGG	---	1	1	P.1.10.1	0.00813
S	72	G72G	ggG	ggA	1	1	P.1.12	0.000484
S	72	G72V	gGg	gTg	1	1	P.1.14	0.000048
S	72	G72del	GGG	---	1	1	P.1.15	0.000232
S	72	G72G	ggG	ggA	1	1	P.1.15	0.000232
S	72	G72W	Ggg	Tgg	1	1	P.1.15	0.000232
S	72	G72E	gGg	gAg	1	1	P.1.15	0.000232
S	72	G72G	ggG	ggA	1	1	P.1.7	0.000319
S	72	G72R	Ggg	Agg	1	1	P.1.8	0.004785
S	72	G72R	Ggg	Cgg	1	1	P.2	0.000187
S	72	G72V	gGg	gTg	1	1	P.2	0.000187
S	72	G72A	gGg	gCg	1	1	P.2	0.000187
S	72	G72G	ggG	ggA	1	1	P.2	0.000187
S	72	G72P	GGg	CCg	1	1	P.2	0.000187
S	72	G72R	Ggg	Agg	1	1	P.3	0.001595
S	72	G72R	Ggg	Agg	1	1	P.5	0.013699
S	72	G72G	ggG	ggA	1	1	Q.1	0.000126
S	72	G72del	GGG	---	1	1	Q.1	0.000126
S	72	G72W	Ggg	Tgg	1	1	Q.8	0.000165
S	72	G72V	gGg	gTg	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.