CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 719

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S719T719InonsynaCtaTt1196911969123717-23719
S719T719AnonsynActGct138138123717-23719
S719T719TsynacTacC1121080.96428623717-23719
S719T719TsynacTacA11230.026785723717-23719
S719T719TsynacTacG11210.0089285723717-23719
S719T719SnonsynaCtaGt97800.82474223717-23719
S719T719SnonsynActTct97170.17525823717-23719
S719T719NnonsynaCtaAt4444123717-23719
S719T719deldelACT---3939123717-23719
S719T719VnonsynACtGTt33123717-23719
S719T719LnonsynACtCTt22123717-23719
S719T719PnonsynActCct22123717-23719
S719T719del1delacTac-210.523717-23719
S719T719del1delACt-Tt210.523717-23719
S719T719del2delACTG--11123717-23719
S719T719YnonsynACTTAC11123717-23719
S719T719FnonsynACtTTt11123717-23719

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S719T719IaCtaTt1196911969All0.002289
S719T719IaCtaTt1027210272AY.420.413244
S719T719IaCtaTt463463B.1.1.70.000414
S719T719IaCtaTt197197B.1.4480.51706
S719T719IaCtaTt150150AY.1030.000931
S719T719AActGct138138All0.000026
S719T719TacTacC108112All0.000021
S719T719TacTacA3112All0.000001
S719T719TacTacG1112All0
S719T719AActGct104104AY.120.03287
S719T719SaCtaGt8097All0.000015
S719T719SActTct1797All0.000003
S719T719IaCtaTt8787AY.40.000135
S719T719IaCtaTt6767B.1.617.20.000252
S719T719IaCtaTt5151B.1.10.000925
S719T719IaCtaTt4949B.1.1770.000645
S719T719IaCtaTt4747AY.430.000208
S719T719IaCtaTt4646B.1.20.000405
S719T719NaCtaAt4444All0.000008
S719T719IaCtaTt4343AY.440.000262
S719T719TacTacC4243B.1.1.70.000038
S719T719TacTacA143B.1.1.70.000001
S719T719delACT---3939All0.000007
S719T719IaCtaTt2727B.1.3510.000803
S719T719IaCtaTt2626AY.250.000156
S719T719IaCtaTt2525B.10.000229
S719T719IaCtaTt2222AY.260.000623
S719T719IaCtaTt2222AY.290.000347
S719T719SaCtaGt2222AY.440.000134
S719T719IaCtaTt1717AY.98.10.000823
S719T719TacTacC1616AY.440.000097
S719T719IaCtaTt1515AY.1000.00069
S719T719IaCtaTt1515AY.30.000149
S719T719IaCtaTt1414AY.1020.000371
S719T719NaCtaAt1313B.1.617.20.000049
S719T719IaCtaTt1111AY.410.003233
S719T719AActGct1111AY.430.000049
S719T719TacTacC1111B.1.617.20.000041
S719T719SaCtaGt911B.1.617.20.000034
S719T719SActTct211B.1.617.20.000008
S719T719IaCtaTt1010AY.390.000247
S719T719IaCtaTt1010B.1.2430.000696
S719T719IaCtaTt1010B.1.5960.000871
S719T719IaCtaTt1010P.20.001866
S719T719IaCtaTt77AY.1100.000789
S719T719IaCtaTt77AY.200.000272
S719T719IaCtaTt77B.1.4220.005686
S719T719IaCtaTt77D.20.000525
S719T719IaCtaTt77P.10.00011
S719T719IaCtaTt66AY.9.10.000502
S719T719IaCtaTt66B.1.2400.001293
S719T719SaCtaGt45AY.250.000024
S719T719SActTct15AY.250.000006
S719T719NaCtaAt55AY.30.00005
S719T719IaCtaTt55AY.340.000485
S719T719TacTacC45AY.40.000006
S719T719TacTacA15AY.40.000002
S719T719delACT---55AY.430.000022
S719T719IaCtaTt55AY.450.000608
S719T719IaCtaTt55AY.90.000338
S719T719SaCtaGt55B.1.1.2220.00102
S719T719IaCtaTt55B.1.2580.000333
S719T719TacTacC55B.1.360.00073
S719T719NaCtaAt44AY.200.000155
S719T719IaCtaTt44AY.4.20.000087
S719T719SaCtaGt44AY.4.50.00043
S719T719TacTacC44AY.430.000018
S719T719SaCtaGt44AY.450.000487
S719T719IaCtaTt44AY.46.40.000658
S719T719IaCtaTt44AY.5.30.00135
S719T719IaCtaTt44AY.540.000381
S719T719delACT---44B.10.000037
S719T719IaCtaTt44B.1.1.5190.000159
S719T719SaCtaGt44B.1.1.70.000004
S719T719IaCtaTt44B.1.3690.001141
S719T719IaCtaTt44B.1.4290.000094
S719T719IaCtaTt44C.230.023256
S719T719IaCtaTt44C.370.000464
S719T719delACT---44P.10.000063
S719T719IaCtaTt44P.1.140.000191
S719T719NaCtaAt33A.190.028302
S719T719VACtGTt33All0.000001
S719T719IaCtaTt33AY.1190.000106
S719T719IaCtaTt33AY.470.000093
S719T719IaCtaTt33AY.50.000062
S719T719IaCtaTt33AY.610.000314
S719T719IaCtaTt33AY.980.000237
S719T719SActTct23B.1.10.000036
S719T719SaCtaGt13B.1.10.000018
S719T719SaCtaGt33B.1.1.3060.001315
S719T719SActTct33B.1.1.3980.009677
S719T719NaCtaAt33B.1.1.70.000003
S719T719TacTacC33B.1.1600.000094
S719T719IaCtaTt33B.1.1600.000094
S719T719IaCtaTt33B.1.177.100.002634
S719T719IaCtaTt33B.1.360.000438
S719T719IaCtaTt33B.1.3750.002459
S719T719IaCtaTt33B.1.5260.000071
S719T719IaCtaTt33B.1.5770.002062
S719T719delACT---33B.1.617.20.000011
S719T719IaCtaTt33B.1.6370.000219
S719T719IaCtaTt33Q.10.000379
S719T719SaCtaGt220.111111
S719T719LACtCTt220.111111
S719T719IaCtaTt22A.2.50.000998
S719T719PActCct22All0
S719T719LACtCTt22All0
S719T719del1acTac-12All0
S719T719del1ACt-Tt12All0
S719T719AActGct22AY.1000.000092
S719T719TacTacC22AY.1030.000012
S719T719IaCtaTt22AY.1160.000574
S719T719IaCtaTt22AY.1210.000271
S719T719IaCtaTt22AY.230.000139
S719T719delACT---22AY.250.000012
S719T719VACtGTt22AY.260.000057
S719T719TacTacC22AY.260.000057
S719T719IaCtaTt22AY.3.10.000171
S719T719IaCtaTt22AY.330.000134
S719T719IaCtaTt22AY.39.10.000079
S719T719SaCtaGt22AY.40.000003
S719T719NaCtaAt22AY.40.000003
S719T719AActGct22AY.40.000003
S719T719IaCtaTt22AY.4.2.10.000298
S719T719SaCtaGt22AY.410.000588
S719T719IaCtaTt22AY.730.001331
S719T719IaCtaTt22AY.740.000231
S719T719IaCtaTt22AY.750.000112
S719T719IaCtaTt22AY.910.001461
S719T719TacTacC22AY.930.000546
S719T719AActGct22AY.98.10.000097
S719T719SActTct22AY.99.20.000184
S719T719IaCtaTt22AY.99.20.000184
S719T719SaCtaGt22B0.000256
S719T719IaCtaTt22B0.000256
S719T719TacTacA12B.10.000009
S719T719TacTacC12B.10.000009
S719T719NaCtaAt22B.1.10.000036
S719T719IaCtaTt22B.1.1.4090.005666
S719T719AActGct22B.1.1600.000062
S719T719TacTacC22B.1.177.120.000303
S719T719IaCtaTt22B.1.177.240.002591
S719T719IaCtaTt22B.1.177.430.002954
S719T719IaCtaTt22B.1.2210.000142
S719T719NaCtaAt22B.1.2430.000139
S719T719IaCtaTt22B.1.36.190.018519
S719T719IaCtaTt22B.1.36.80.002
S719T719IaCtaTt22B.1.4270.000101
S719T719TacTacC22B.1.4560.006536
S719T719IaCtaTt22B.1.5250.000226
S719T719AActGct22B.1.617.20.000008
S719T719IaCtaTt22B.1.6180.008065
S719T719delACT---22B.1.6210.000177
S719T719IaCtaTt22C.360.001821
S719T719SaCtaGt22C.370.000232
S719T719SaCtaGt22P.10.000032
S719T719IaCtaTt22P.1.120.000968
S719T719delACT---22P.1.150.000465
S719T719IaCtaTt22R.10.00018
S719T719NaCtaAt110.055556
S719T719IaCtaTt11AE.50.018519
S719T719YACTTAC11All0
S719T719del2ACTG--11All0
S719T719FACtTTt11All0
S719T719TacTacC11AY.1000.000046
S719T719delACT---11AY.1000.000046
S719T719SaCtaGt11AY.1020.000027
S719T719NaCtaAt11AY.1020.000027
S719T719delACT---11AY.1030.000006
S719T719SActTct11AY.1030.000006
S719T719NaCtaAt11AY.1030.000006
S719T719AActGct11AY.1030.000006
S719T719IaCtaTt11AY.1060.000335
S719T719IaCtaTt11AY.1130.000142
S719T719IaCtaTt11AY.1180.000063
S719T719IaCtaTt11AY.120.20.001285
S719T719AActGct11AY.1210.000135
S719T719SaCtaGt11AY.1210.000135
S719T719IaCtaTt11AY.160.00038
S719T719IaCtaTt11AY.23.10.000417
S719T719del1acTac-11AY.250.000006
S719T719TacTacC11AY.250.000006
S719T719AActGct11AY.250.000006
S719T719delACT---11AY.30.00001
S719T719AActGct11AY.30.00001
S719T719AActGct11AY.320.000532
S719T719IaCtaTt11AY.320.000532
S719T719IaCtaTt11AY.34.10.00051
S719T719AActGct11AY.34.10.00051
S719T719IaCtaTt11AY.350.000233
S719T719IaCtaTt11AY.370.000316
S719T719AActGct11AY.390.000025
S719T719AActGct11AY.4.20.000022
S719T719IaCtaTt11AY.400.000964
S719T719SaCtaGt11AY.400.000964
S719T719VACtGTt11AY.420.00004
S719T719NaCtaAt11AY.430.000004
S719T719SActTct11AY.430.000004
S719T719delACT---11AY.440.000006
S719T719AActGct11AY.440.000006
S719T719NaCtaAt11AY.440.000006
S719T719IaCtaTt11AY.460.000104
S719T719TacTacC11AY.460.000104
S719T719IaCtaTt11AY.46.60.000072
S719T719TacTacC11AY.470.000031
S719T719IaCtaTt11AY.510.000909
S719T719IaCtaTt11AY.530.000288
S719T719IaCtaTt11AY.590.00053
S719T719IaCtaTt11AY.60.000041
S719T719SaCtaGt11AY.610.000105
S719T719delACT---11AY.670.000464
S719T719IaCtaTt11AY.7.20.000559
S719T719SaCtaGt11AY.740.000116
S719T719IaCtaTt11AY.75.10.00018
S719T719IaCtaTt11AY.790.001211
S719T719delACT---11AY.840.000437
S719T719delACT---11AY.9.20.000037
S719T719NaCtaAt11AY.9.20.000037
S719T719IaCtaTt11AY.9.20.000037
S719T719delACT---11AY.950.000761
S719T719SActTct11AY.98.10.000048
S719T719IaCtaTt11AY.990.001049
S719T719SaCtaGt11AY.990.001049
S719T719del2ACTG--11B.10.000009
S719T719NaCtaAt11B.10.000009
S719T719PActCct11B.10.000009
S719T719TacTacC11B.1.10.000018
S719T719IaCtaTt11B.1.1.1530.001095
S719T719AActGct11B.1.1.1740.003378
S719T719IaCtaTt11B.1.1.1760.000439
S719T719TacTacC11B.1.1.2170.003636
S719T719SaCtaGt11B.1.1.2310.003096
S719T719IaCtaTt11B.1.1.2410.00207
S719T719IaCtaTt11B.1.1.2650.003155
S719T719IaCtaTt11B.1.1.2690.001353
S719T719IaCtaTt11B.1.1.3060.000438
S719T719SActTct11B.1.1.3110.000358
S719T719IaCtaTt11B.1.1.330.000421
S719T719IaCtaTt11B.1.1.3480.000796
S719T719IaCtaTt11B.1.1.3550.015385
S719T719delACT---11B.1.1.3720.000689
S719T719IaCtaTt11B.1.1.390.00051
S719T719delACT---11B.1.1.4090.002833
S719T719SaCtaGt11B.1.1.410.006329
S719T719IaCtaTt11B.1.1.4640.001473
S719T719TacTacC11B.1.1.5190.00004
S719T719IaCtaTt11B.1.1.630.000386
S719T719delACT---11B.1.1.70.000001
S719T719FACtTTt11B.1.1.70.000001
S719T719PActCct11B.1.1.70.000001
S719T719IaCtaTt11B.1.1.700.000341
S719T719IaCtaTt11B.1.1100.004525
S719T719TacTacC11B.1.110.30.000718
S719T719TacTacG11B.1.1390.000733
S719T719IaCtaTt11B.1.1470.000756
S719T719IaCtaTt11B.1.1510.011111
S719T719SaCtaGt11B.1.160.280.002924
S719T719IaCtaTt11B.1.1670.007812
S719T719SActTct11B.1.1770.000013
S719T719TacTacC11B.1.1770.000013
S719T719IaCtaTt11B.1.177.210.000076
S719T719IaCtaTt11B.1.177.40.000211
S719T719IaCtaTt11B.1.177.410.0025
S719T719IaCtaTt11B.1.177.70.000165
S719T719IaCtaTt11B.1.177.750.001041
S719T719IaCtaTt11B.1.177.810.000189
S719T719del1ACt-Tt11B.1.20.000009
S719T719delACT---11B.1.20.000009
S719T719NaCtaAt11B.1.20.000009
S719T719IaCtaTt11B.1.2060.000816
S719T719TacTacC11B.1.2580.000067
S719T719SaCtaGt11B.1.264.10.047619
S719T719IaCtaTt11B.1.2790.000514
S719T719SActTct11B.1.3510.00003
S719T719IaCtaTt11B.1.36.290.000517
S719T719IaCtaTt11B.1.36.380.001642
S719T719AActGct11B.1.3670.000792
S719T719TacTacC11B.1.3670.000792
S719T719IaCtaTt11B.1.4000.000429
S719T719IaCtaTt11B.1.416.10.001563
S719T719IaCtaTt11B.1.4260.001009
S719T719IaCtaTt11B.1.4700.001404
S719T719IaCtaTt11B.1.5090.000866
S719T719SaCtaGt11B.1.5580.004566
S719T719IaCtaTt11B.1.5610.000397
S719T719SaCtaGt11B.1.5960.000087
S719T719NaCtaAt11B.1.5960.000087
S719T719IaCtaTt11B.1.6090.000479
S719T719YACTTAC11B.1.617.20.000004
S719T719delACT---11B.1.6200.000946
S719T719TacTacC11B.1.6210.000089
S719T719IaCtaTt11B.1.6210.000089
S719T719IaCtaTt11B.1.6270.00202
S719T719delACT---11B.1.6270.00202
S719T719IaCtaTt11B.1.6280.000352
S719T719IaCtaTt11B.1.6300.005236
S719T719delACT---11B.1.6380.052632
S719T719IaCtaTt11B.1.930.000934
S719T719AActGct11B.420.033333
S719T719IaCtaTt11B.610.005747
S719T719IaCtaTt11C.350.000774
S719T719delACT---11C.370.000116
S719T719SActTct11D.20.000075
S719T719NaCtaAt11P.10.000016
S719T719delACT---11P.1.130.000898
S719T719AActGct11P.1.160.000374
S719T719IaCtaTt11P.1.170.000162