CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 716 | T716I | nonsyn | aCa | aTa | 1147183 | 1147179 | 0.999997 | 23708-23710 | |
S | 716 | T716I | nonsyn | aCA | aTT | 1147183 | 4 | 0.0000034868 | 23708-23710 | |
S | 716 | T716V | nonsyn | ACa | GTa | 375 | 372 | 0.992 | 23708-23710 | |
S | 716 | T716V | nonsyn | ACA | GTT | 375 | 3 | 0.008 | 23708-23710 | |
S | 716 | T716T | syn | acA | acG | 113 | 60 | 0.530973 | 23708-23710 | |
S | 716 | T716T | syn | acA | acT | 113 | 32 | 0.283186 | 23708-23710 | |
S | 716 | T716T | syn | acA | acC | 113 | 21 | 0.185841 | 23708-23710 | |
S | 716 | T716del | del | ACA | --- | 38 | 38 | 1 | 23708-23710 | |
S | 716 | T716A | nonsyn | Aca | Gca | 29 | 27 | 0.931035 | 23708-23710 | |
S | 716 | T716A | nonsyn | AcA | GcT | 29 | 2 | 0.0689655 | 23708-23710 | |
S | 716 | T716K | nonsyn | aCa | aAa | 22 | 21 | 0.954545 | 23708-23710 | |
S | 716 | T716K | nonsyn | aCA | aAG | 22 | 1 | 0.0454545 | 23708-23710 | |
S | 716 | T716S | nonsyn | Aca | Tca | 19 | 19 | 1 | 23708-23710 | |
S | 716 | T716L | nonsyn | ACa | TTa | 13 | 12 | 0.923077 | 23708-23710 | |
S | 716 | T716L | nonsyn | ACa | CTa | 13 | 1 | 0.0769231 | 23708-23710 | |
S | 716 | T716M | nonsyn | aCA | aTG | 9 | 9 | 1 | 23708-23710 | |
S | 716 | T716del1 | del | Aca | -ca | 9 | 4 | 0.444444 | 23708-23710 | |
S | 716 | T716del1 | del | aCa | a-a | 9 | 3 | 0.333333 | 23708-23710 | |
S | 716 | T716del1 | del | ACa | -Ta | 9 | 1 | 0.111111 | 23708-23710 | |
S | 716 | T716del1 | del | acA | ac- | 9 | 1 | 0.111111 | 23708-23710 | |
S | 716 | T716R | nonsyn | aCa | aGa | 6 | 6 | 1 | 23708-23710 | |
S | 716 | T716P | nonsyn | Aca | Cca | 3 | 3 | 1 | 23708-23710 | |
S | 716 | T716Q | nonsyn | ACa | CAa | 3 | 2 | 0.666667 | 23708-23710 | |
S | 716 | T716Q | nonsyn | ACA | CAG | 3 | 1 | 0.333333 | 23708-23710 | |
S | 716 | T716X | nonsyn | ACa | TAa | 1 | 1 | 1 | 23708-23710 | |
S | 716 | T716N | nonsyn | aCA | aAT | 1 | 1 | 1 | 23708-23710 | |
S | 716 | T716D | nonsyn | ACA | GAT | 1 | 1 | 1 | 23708-23710 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 716 | T716I | aCa | aTa | 1147179 | 1147183 | All | 0.219412 |
S | 716 | T716I | aCA | aTT | 4 | 1147183 | All | 0.000001 |
S | 716 | T716I | aCa | aTa | 1112509 | 1112511 | B.1.1.7 | 0.995944 |
S | 716 | T716I | aCA | aTT | 2 | 1112511 | B.1.1.7 | 0.000002 |
S | 716 | T716I | aCa | aTa | 7844 | 7844 | Q.1 | 0.990904 |
S | 716 | T716I | aCa | aTa | 6854 | 6854 | Q.3 | 0.994054 |
S | 716 | T716I | aCa | aTa | 3135 | 3135 | B.1.575 | 0.951153 |
S | 716 | T716I | aCa | aTa | 2235 | 2235 | B.1.1 | 0.040545 |
S | 716 | T716I | aCa | aTa | 2175 | 2175 | Q.4 | 0.989086 |
S | 716 | T716I | aCa | aTa | 1863 | 1863 | B.1 | 0.017064 |
S | 716 | T716I | aCa | aTa | 1642 | 1642 | B.1.214.2 | 0.984412 |
S | 716 | T716I | aCa | aTa | 1623 | 1623 | Q.2 | 0.995706 |
S | 716 | T716I | aCa | aTa | 896 | 896 | Q.7 | 0.995556 |
S | 716 | T716I | aCa | aTa | 657 | 657 | AY.25 | 0.003952 |
S | 716 | T716I | aCa | aTa | 568 | 568 | AY.4 | 0.000884 |
S | 716 | T716I | aCa | aTa | 396 | 396 | B.1.575.1 | 0.965854 |
S | 716 | T716V | ACa | GTa | 372 | 375 | All | 0.000071 |
S | 716 | T716V | ACA | GTT | 3 | 375 | All | 0.000001 |
S | 716 | T716V | ACa | GTa | 366 | 366 | B.1.1.7 | 0.000328 |
S | 716 | T716I | aCa | aTa | 323 | 323 | Q.8 | 0.053265 |
S | 716 | T716I | aCa | aTa | 231 | 231 | C.1.2 | 0.982979 |
S | 716 | T716I | aCa | aTa | 208 | 208 | B.1.575.2 | 1 |
S | 716 | T716I | aCa | aTa | 196 | 196 | B.1.375 | 0.160656 |
S | 716 | T716I | aCa | aTa | 195 | 195 | B.1.177.73 | 0.110419 |
S | 716 | T716I | aCa | aTa | 161 | 161 | B.1.576 | 0.145966 |
S | 716 | T716I | aCa | aTa | 151 | 151 | Q.6 | 1 |
S | 716 | T716I | aCa | aTa | 146 | 146 | B.1.2 | 0.001286 |
S | 716 | T716I | aCa | aTa | 136 | 136 | B.1.214.3 | 0.971429 |
S | 716 | T716I | aCa | aTa | 135 | 135 | B.1.177 | 0.001778 |
S | 716 | T716I | aCa | aTa | 126 | 126 | B.1.617.2 | 0.000474 |
S | 716 | T716I | aCa | aTa | 122 | 122 | AY.5 | 0.002519 |
S | 716 | T716T | acA | acG | 60 | 113 | All | 0.000011 |
S | 716 | T716T | acA | acT | 32 | 113 | All | 0.000006 |
S | 716 | T716T | acA | acC | 21 | 113 | All | 0.000004 |
S | 716 | T716I | aCa | aTa | 109 | 109 | B.1.214.4 | 0.990909 |
S | 716 | T716I | aCa | aTa | 100 | 100 | AY.43 | 0.000443 |
S | 716 | T716I | aCa | aTa | 95 | 95 | B.1.596 | 0.008278 |
S | 716 | T716I | aCa | aTa | 93 | 93 | B.1.1.377 | 0.128453 |
S | 716 | T716I | aCa | aTa | 83 | 83 | AY.39 | 0.002051 |
S | 716 | T716I | aCa | aTa | 82 | 82 | B.1.526 | 0.001927 |
S | 716 | T716I | aCa | aTa | 79 | 79 | P.1 | 0.001245 |
S | 716 | T716I | aCa | aTa | 77 | 77 | B.1.351 | 0.002289 |
S | 716 | T716I | aCa | aTa | 71 | 71 | B.1.221 | 0.005043 |
S | 716 | T716I | aCa | aTa | 67 | 67 | B.1.1.205 | 0.249071 |
S | 716 | T716I | aCa | aTa | 58 | 58 | Q.5 | 0.983051 |
S | 716 | T716I | aCa | aTa | 57 | 57 | AY.44 | 0.000347 |
S | 716 | T716I | aCa | aTa | 53 | 53 | B.1.177.7 | 0.008737 |
S | 716 | T716I | aCa | aTa | 52 | 52 | B | 0.006646 |
S | 716 | T716I | aCa | aTa | 45 | 45 | XA | 1 |
S | 716 | T716I | aCa | aTa | 41 | 41 | AY.81 | 0.081673 |
S | 716 | T716I | aCa | aTa | 40 | 40 | AY.103 | 0.000248 |
S | 716 | T716del | ACA | --- | 38 | 38 | All | 0.000007 |
S | 716 | T716I | aCa | aTa | 37 | 37 | B.1.1.409 | 0.104816 |
S | 716 | T716I | aCa | aTa | 37 | 37 | B.1.429 | 0.000871 |
S | 716 | T716I | aCa | aTa | 34 | 34 | C.36.3.1 | 0.092391 |
S | 716 | T716I | aCa | aTa | 33 | 33 | B.1.609 | 0.01582 |
S | 716 | T716I | aCa | aTa | 31 | 31 | B.1.1.519 | 0.001231 |
S | 716 | T716I | aCa | aTa | 31 | 31 | P.1.1 | 0.009848 |
S | 716 | T716A | Aca | Gca | 27 | 29 | All | 0.000005 |
S | 716 | T716A | AcA | GcT | 2 | 29 | All | 0 |
S | 716 | T716I | aCa | aTa | 29 | 29 | AY.119 | 0.001024 |
S | 716 | T716I | aCa | aTa | 29 | 29 | AY.6 | 0.001193 |
S | 716 | T716I | aCa | aTa | 29 | 29 | B.1.427 | 0.001464 |
S | 716 | T716I | aCa | aTa | 28 | 28 | B.1.595 | 0.007307 |
S | 716 | T716I | aCa | aTa | 26 | 26 | AY.26 | 0.000736 |
S | 716 | T716I | aCa | aTa | 25 | 25 | B.1.160 | 0.00078 |
S | 716 | T716I | aCa | aTa | 25 | 25 | B.1.438.1 | 0.002682 |
S | 716 | T716K | aCa | aAa | 21 | 22 | All | 0.000004 |
S | 716 | T716K | aCA | aAG | 1 | 22 | All | 0 |
S | 716 | T716I | aCa | aTa | 22 | 22 | B.1.8 | 0.043393 |
S | 716 | T716I | aCa | aTa | 21 | 21 | AY.47 | 0.000653 |
S | 716 | T716I | aCa | aTa | 21 | 21 | B.1.623 | 0.011266 |
S | 716 | T716I | aCa | aTa | 20 | 20 | B.1.258.17 | 0.002079 |
S | 716 | T716S | Aca | Tca | 19 | 19 | All | 0.000004 |
S | 716 | T716I | aCa | aTa | 17 | 17 | B.1.258 | 0.001131 |
S | 716 | T716I | aCa | aTa | 17 | 17 | B.1.620 | 0.016083 |
S | 716 | T716A | Aca | Gca | 16 | 16 | AY.4 | 0.000025 |
S | 716 | T716I | aCa | aTa | 16 | 16 | B.1.1.161 | 0.056537 |
S | 716 | T716I | aCa | aTa | 16 | 16 | B.1.1.39 | 0.008155 |
S | 716 | T716I | aCa | aTa | 16 | 16 | B.1.497 | 0.005036 |
S | 716 | T716T | acA | acG | 15 | 15 | AY.44 | 0.000091 |
S | 716 | T716I | aCa | aTa | 15 | 15 | B.1.1.279 | 0.016816 |
S | 716 | T716I | aCa | aTa | 15 | 15 | B.1.214 | 0.054945 |
S | 716 | T716I | aCa | aTa | 14 | 14 | AY.45 | 0.001704 |
S | 716 | T716I | aCa | aTa | 14 | 14 | B.1.210 | 0.029851 |
S | 716 | T716L | ACa | TTa | 12 | 13 | All | 0.000002 |
S | 716 | T716L | ACa | CTa | 1 | 13 | All | 0 |
S | 716 | T716I | aCa | aTa | 13 | 13 | AY.4.2 | 0.000282 |
S | 716 | T716I | aCa | aTa | 13 | 13 | B.1.1.317 | 0.005352 |
S | 716 | T716I | aCa | aTa | 12 | 12 | AY.102 | 0.000318 |
S | 716 | T716I | aCa | aTa | 12 | 12 | AY.3 | 0.000119 |
S | 716 | T716L | ACa | TTa | 11 | 12 | B.1.1.7 | 0.00001 |
S | 716 | T716L | ACa | CTa | 1 | 12 | B.1.1.7 | 0.000001 |
S | 716 | T716I | aCa | aTa | 12 | 12 | B.1.243 | 0.000835 |
S | 716 | T716I | aCa | aTa | 12 | 12 | P.1.16 | 0.004489 |
S | 716 | T716I | aCa | aTa | 9 | 11 | 0.5 | |
S | 716 | T716I | aCA | aTT | 2 | 11 | 0.111111 | |
S | 716 | T716T | acA | acG | 8 | 11 | AY.4 | 0.000012 |
S | 716 | T716T | acA | acT | 3 | 11 | AY.4 | 0.000005 |
S | 716 | T716I | aCa | aTa | 11 | 11 | B.1.240 | 0.002371 |
S | 716 | T716I | aCa | aTa | 11 | 11 | C.36.3 | 0.006239 |
S | 716 | T716I | aCa | aTa | 11 | 11 | P.1.17 | 0.001779 |
S | 716 | T716I | aCa | aTa | 10 | 10 | AY.29 | 0.000158 |
S | 716 | T716I | aCa | aTa | 10 | 10 | B.1.36.36 | 0.00602 |
S | 716 | T716I | aCa | aTa | 10 | 10 | B.1.411 | 0.037037 |
S | 716 | T716I | aCa | aTa | 10 | 10 | P.1.15 | 0.002323 |
S | 716 | T716M | aCA | aTG | 9 | 9 | All | 0.000002 |
S | 716 | T716del1 | Aca | -ca | 4 | 9 | All | 0.000001 |
S | 716 | T716del1 | aCa | a-a | 3 | 9 | All | 0.000001 |
S | 716 | T716del1 | acA | ac- | 1 | 9 | All | 0 |
S | 716 | T716del1 | ACa | -Ta | 1 | 9 | All | 0 |
S | 716 | T716I | aCa | aTa | 9 | 9 | AY.117 | 0.000761 |
S | 716 | T716I | aCa | aTa | 9 | 9 | AY.118 | 0.000564 |
S | 716 | T716I | aCa | aTa | 9 | 9 | AY.14 | 0.000792 |
S | 716 | T716I | aCa | aTa | 9 | 9 | B.1.1.220 | 0.016729 |
S | 716 | T716I | aCa | aTa | 9 | 9 | B.1.1.28 | 0.002801 |
S | 716 | T716I | aCa | aTa | 9 | 9 | B.1.1.89 | 0.054545 |
S | 716 | T716I | aCa | aTa | 9 | 9 | B.1.214.1 | 0.18 |
S | 716 | T716I | aCa | aTa | 8 | 8 | AY.72 | 0.010884 |
S | 716 | T716I | aCa | aTa | 8 | 8 | B.1.1.291 | 0.005939 |
S | 716 | T716I | aCa | aTa | 8 | 8 | B.1.177.21 | 0.000612 |
S | 716 | T716T | acA | acG | 5 | 8 | B.1.617.2 | 0.000019 |
S | 716 | T716T | acA | acT | 2 | 8 | B.1.617.2 | 0.000008 |
S | 716 | T716T | acA | acC | 1 | 8 | B.1.617.2 | 0.000004 |
S | 716 | T716I | aCa | aTa | 8 | 8 | P.1.12 | 0.003872 |
S | 716 | T716I | aCa | aTa | 7 | 7 | AY.100 | 0.000322 |
S | 716 | T716I | aCa | aTa | 7 | 7 | AY.20 | 0.000272 |
S | 716 | T716S | Aca | Tca | 7 | 7 | AY.25 | 0.000042 |
S | 716 | T716T | acA | acC | 3 | 7 | AY.43 | 0.000013 |
S | 716 | T716T | acA | acT | 2 | 7 | AY.43 | 0.000009 |
S | 716 | T716T | acA | acG | 2 | 7 | AY.43 | 0.000009 |
S | 716 | T716I | aCa | aTa | 7 | 7 | AY.54 | 0.000667 |
S | 716 | T716I | aCa | aTa | 7 | 7 | AY.68 | 0.001916 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.1.214 | 0.000388 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.1.285 | 0.045752 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.1.434 | 0.00244 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.1.50 | 0.004752 |
S | 716 | T716M | aCA | aTG | 7 | 7 | B.1.1.7 | 0.000006 |
S | 716 | T716T | acA | acC | 7 | 7 | B.1.177.86 | 0.001284 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.3 | 0.018325 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.351.5 | 0.004197 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.367 | 0.005547 |
S | 716 | T716I | aCa | aTa | 7 | 7 | B.1.637 | 0.000512 |
S | 716 | T716V | ACa | GTa | 4 | 6 | 0.222222 | |
S | 716 | T716V | ACA | GTT | 2 | 6 | 0.111111 | |
S | 716 | T716R | aCa | aGa | 6 | 6 | All | 0.000001 |
S | 716 | T716I | aCa | aTa | 6 | 6 | AY.3.1 | 0.000512 |
S | 716 | T716I | aCa | aTa | 6 | 6 | AY.75 | 0.000336 |
S | 716 | T716I | aCa | aTa | 6 | 6 | AY.9 | 0.000406 |
S | 716 | T716I | aCa | aTa | 6 | 6 | B.1.1.528 | 0.028846 |
S | 716 | T716I | aCa | aTa | 6 | 6 | B.1.139 | 0.004399 |
S | 716 | T716I | aCa | aTa | 6 | 6 | B.1.222 | 0.010152 |
S | 716 | T716I | aCa | aTa | 5 | 5 | AY.120 | 0.000186 |
S | 716 | T716del | ACA | --- | 5 | 5 | AY.43 | 0.000022 |
S | 716 | T716I | aCa | aTa | 5 | 5 | AY.46 | 0.00052 |
S | 716 | T716T | acA | acC | 5 | 5 | AY.6 | 0.000206 |
S | 716 | T716I | aCa | aTa | 5 | 5 | AY.69 | 0.000933 |
S | 716 | T716I | aCa | aTa | 5 | 5 | AY.7.1 | 0.000564 |
S | 716 | T716T | acA | acT | 5 | 5 | B.1.1.222 | 0.00102 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.1.294 | 0.006329 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.1.306 | 0.002192 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.1.507 | 0.043478 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.177.31 | 0.057471 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.177.77 | 0.003631 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.234 | 0.00066 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.369 | 0.001426 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.459 | 0.020408 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.462 | 0.036232 |
S | 716 | T716I | aCa | aTa | 5 | 5 | B.1.580 | 0.020325 |
S | 716 | T716I | aCa | aTa | 5 | 5 | C.37 | 0.00058 |
S | 716 | T716A | AcA | GcT | 2 | 4 | 0.111111 | |
S | 716 | T716A | Aca | Gca | 2 | 4 | 0.111111 | |
S | 716 | T716I | aCa | aTa | 4 | 4 | AA.7 | 0.036697 |
S | 716 | T716I | aCa | aTa | 4 | 4 | AY.23 | 0.000279 |
S | 716 | T716I | aCa | aTa | 4 | 4 | AY.30 | 0.001583 |
S | 716 | T716T | acA | acG | 4 | 4 | AY.39.1 | 0.000158 |
S | 716 | T716I | aCa | aTa | 4 | 4 | AY.75.1 | 0.000721 |
S | 716 | T716I | aCa | aTa | 4 | 4 | AY.95 | 0.003044 |
S | 716 | T716del | ACA | --- | 4 | 4 | B.1 | 0.000037 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.1.1 | 0.001307 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.1.10 | 0.004459 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.1.301 | 0.004717 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.1.312 | 0.007648 |
S | 716 | T716T | acA | acG | 4 | 4 | B.1.177 | 0.000053 |
S | 716 | T716T | acA | acG | 4 | 4 | B.1.2 | 0.000035 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.237 | 0.0199 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.330 | 0.114286 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.351.2 | 0.00121 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.599 | 0.014599 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.617.1 | 0.000516 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.619 | 0.003484 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.621 | 0.000354 |
S | 716 | T716I | aCa | aTa | 4 | 4 | B.1.67 | 0.173913 |
S | 716 | T716del | ACA | --- | 4 | 4 | P.1 | 0.000063 |
S | 716 | T716I | aCa | aTa | 4 | 4 | P.1.10.1 | 0.03252 |
S | 716 | T716I | aCa | aTa | 4 | 4 | P.1.7 | 0.001277 |
S | 716 | T716I | aCa | aTa | 4 | 4 | R.1 | 0.00036 |
S | 716 | T716I | aCa | aTa | 3 | 3 | A | 0.001161 |
S | 716 | T716P | Aca | Cca | 3 | 3 | All | 0.000001 |
S | 716 | T716Q | ACa | CAa | 2 | 3 | All | 0 |
S | 716 | T716Q | ACA | CAG | 1 | 3 | All | 0 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.19 | 0.003421 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.34 | 0.000291 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.36 | 0.000445 |
S | 716 | T716R | aCa | aGa | 3 | 3 | AY.4 | 0.000005 |
S | 716 | T716S | Aca | Tca | 3 | 3 | AY.44 | 0.000018 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.46.4 | 0.000494 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.46.5 | 0.000595 |
S | 716 | T716T | acA | acT | 3 | 3 | AY.5 | 0.000062 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.53 | 0.000863 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.61 | 0.000314 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.73 | 0.001996 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.85 | 0.001282 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.9.2 | 0.00011 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.98 | 0.000237 |
S | 716 | T716I | aCa | aTa | 3 | 3 | AY.98.1 | 0.000145 |
S | 716 | T716V | ACa | GTa | 2 | 3 | B.1.1 | 0.000036 |
S | 716 | T716V | ACA | GTT | 1 | 3 | B.1.1 | 0.000018 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.1.141 | 0.006036 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.1.284 | 0.000322 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.1.318 | 0.000905 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.1.370 | 0.037975 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.1.4 | 0.008929 |
S | 716 | T716T | acA | acG | 2 | 3 | B.1.1.519 | 0.000079 |
S | 716 | T716T | acA | acT | 1 | 3 | B.1.1.519 | 0.00004 |
S | 716 | T716K | aCa | aAa | 3 | 3 | B.1.1.7 | 0.000003 |
S | 716 | T716del | ACA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
S | 716 | T716del1 | aCa | a-a | 2 | 3 | B.1.1.7 | 0.000002 |
S | 716 | T716del1 | Aca | -ca | 1 | 3 | B.1.1.7 | 0.000001 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.157 | 0.008955 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.177.4 | 0.000633 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.177.46 | 0.002755 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.177.82 | 0.001432 |
S | 716 | T716del1 | Aca | -ca | 2 | 3 | B.1.2 | 0.000018 |
S | 716 | T716del1 | ACa | -Ta | 1 | 3 | B.1.2 | 0.000009 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.36 | 0.000438 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.361 | 0.003866 |
S | 716 | T716T | acA | acG | 2 | 3 | B.1.427 | 0.000101 |
S | 716 | T716T | acA | acT | 1 | 3 | B.1.427 | 0.00005 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.577 | 0.002062 |
S | 716 | T716del | ACA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.621.1 | 0.001517 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.628 | 0.001057 |
S | 716 | T716I | aCa | aTa | 3 | 3 | B.1.634 | 0.010274 |
S | 716 | T716I | aCa | aTa | 3 | 3 | D.2 | 0.000225 |
S | 716 | T716I | aCa | aTa | 3 | 3 | P.1.6 | 0.005837 |
S | 716 | T716T | acA | acT | 2 | 2 | 0.111111 | |
S | 716 | T716T | acA | acC | 1 | 2 | AY.100 | 0.000046 |
S | 716 | T716T | acA | acG | 1 | 2 | AY.100 | 0.000046 |
S | 716 | T716T | acA | acG | 2 | 2 | AY.102 | 0.000053 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.110 | 0.000225 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.111 | 0.000366 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.12 | 0.000632 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.120.1 | 0.000642 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.121 | 0.000271 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.13 | 0.000322 |
S | 716 | T716del | ACA | --- | 2 | 2 | AY.25 | 0.000012 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.29.1 | 0.000441 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.39.1 | 0.000079 |
S | 716 | T716S | Aca | Tca | 2 | 2 | AY.4 | 0.000003 |
S | 716 | T716K | aCa | aAa | 2 | 2 | AY.4 | 0.000003 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.41 | 0.000588 |
S | 716 | T716S | Aca | Tca | 2 | 2 | AY.47 | 0.000062 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.62 | 0.000871 |
S | 716 | T716I | aCa | aTa | 2 | 2 | AY.92 | 0.000575 |
S | 716 | T716T | acA | acG | 2 | 2 | B.1.1 | 0.000036 |
S | 716 | T716K | aCa | aAa | 2 | 2 | B.1.1 | 0.000036 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.207 | 0.002364 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.232 | 0.00363 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.299 | 0.02439 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.389 | 0.012121 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.398 | 0.006452 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.419 | 0.014815 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.420 | 0.002012 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.464 | 0.002946 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.526 | 0.007092 |
S | 716 | T716T | acA | acT | 2 | 2 | B.1.1.54 | 0.006042 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.56 | 0.035714 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.1.63 | 0.000772 |
S | 716 | T716K | aCa | aAa | 1 | 2 | B.1.146 | 0.004237 |
S | 716 | T716K | aCA | aAG | 1 | 2 | B.1.146 | 0.004237 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.160.16 | 0.001859 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.170 | 0.008621 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.177.12 | 0.000303 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.177.42 | 0.001789 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.177.44 | 0.001038 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.177.60 | 0.000437 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.177.81 | 0.000379 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.265 | 0.002541 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.311 | 0.000549 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.36.29 | 0.001035 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.380 | 0.013245 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.396 | 0.001411 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.399 | 0.003868 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.466.2 | 0.000782 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.517 | 0.000854 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.564 | 0.000852 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.589 | 0.015152 |
S | 716 | T716del | ACA | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.633 | 0.083333 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.1.636 | 0.013423 |
S | 716 | T716I | aCa | aTa | 2 | 2 | B.6 | 0.00182 |
S | 716 | T716I | aCa | aTa | 2 | 2 | C.1 | 0.004785 |
S | 716 | T716I | aCa | aTa | 2 | 2 | C.35 | 0.001548 |
S | 716 | T716I | aCa | aTa | 2 | 2 | C.36 | 0.001821 |
S | 716 | T716I | aCa | aTa | 2 | 2 | N.5 | 0.003534 |
S | 716 | T716T | acA | acC | 1 | 2 | P.1 | 0.000016 |
S | 716 | T716T | acA | acT | 1 | 2 | P.1 | 0.000016 |
S | 716 | T716I | aCa | aTa | 2 | 2 | P.1.13 | 0.001797 |
S | 716 | T716T | acA | acC | 2 | 2 | P.1.15 | 0.000465 |
S | 716 | T716del | ACA | --- | 2 | 2 | P.1.15 | 0.000465 |
S | 716 | T716P | Aca | Cca | 1 | 1 | 0.055556 | |
S | 716 | T716I | aCa | aTa | 1 | 1 | A.2.2 | 0.001689 |
S | 716 | T716I | aCa | aTa | 1 | 1 | A.2.5 | 0.000499 |
S | 716 | T716I | aCa | aTa | 1 | 1 | A.2.5.1 | 0.004808 |
S | 716 | T716I | aCa | aTa | 1 | 1 | A.2.5.2 | 0.001572 |
S | 716 | T716I | aCa | aTa | 1 | 1 | A.27 | 0.001656 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AA.1 | 0.007246 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
S | 716 | T716X | ACa | TAa | 1 | 1 | All | 0 |
S | 716 | T716D | ACA | GAT | 1 | 1 | All | 0 |
S | 716 | T716N | aCA | aAT | 1 | 1 | All | 0 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AT.1 | 0.005128 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AU.2 | 0.002421 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.1 | 0.000396 |
S | 716 | T716del | ACA | --- | 1 | 1 | AY.100 | 0.000046 |
S | 716 | T716del | ACA | --- | 1 | 1 | AY.103 | 0.000006 |
S | 716 | T716T | acA | acT | 1 | 1 | AY.113 | 0.000142 |
S | 716 | T716R | aCa | aGa | 1 | 1 | AY.117 | 0.000085 |
S | 716 | T716A | Aca | Gca | 1 | 1 | AY.119 | 0.000035 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
S | 716 | T716K | aCa | aAa | 1 | 1 | AY.20 | 0.000039 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.24 | 0.000431 |
S | 716 | T716T | acA | acT | 1 | 1 | AY.25 | 0.000006 |
S | 716 | T716K | aCa | aAa | 1 | 1 | AY.29 | 0.000016 |
S | 716 | T716del | ACA | --- | 1 | 1 | AY.3 | 0.00001 |
S | 716 | T716A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
S | 716 | T716R | aCa | aGa | 1 | 1 | AY.3 | 0.00001 |
S | 716 | T716T | acA | acG | 1 | 1 | AY.3 | 0.00001 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.33 | 0.000067 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
S | 716 | T716T | acA | acT | 1 | 1 | AY.37 | 0.000316 |
S | 716 | T716T | acA | acT | 1 | 1 | AY.39 | 0.000025 |
S | 716 | T716K | aCa | aAa | 1 | 1 | AY.4.2 | 0.000022 |
S | 716 | T716S | Aca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.4.3 | 0.000842 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
S | 716 | T716del1 | aCa | a-a | 1 | 1 | AY.43 | 0.000004 |
S | 716 | T716A | Aca | Gca | 1 | 1 | AY.43 | 0.000004 |
S | 716 | T716K | aCa | aAa | 1 | 1 | AY.44 | 0.000006 |
S | 716 | T716L | ACa | TTa | 1 | 1 | AY.44 | 0.000006 |
S | 716 | T716Q | ACA | CAG | 1 | 1 | AY.44 | 0.000006 |
S | 716 | T716K | aCa | aAa | 1 | 1 | AY.46 | 0.000104 |
S | 716 | T716T | acA | acT | 1 | 1 | AY.46.4 | 0.000165 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.46.6 | 0.000072 |
S | 716 | T716K | aCa | aAa | 1 | 1 | AY.5 | 0.000021 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.5.4 | 0.000277 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.55 | 0.000917 |
S | 716 | T716A | Aca | Gca | 1 | 1 | AY.62 | 0.000436 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
S | 716 | T716del | ACA | --- | 1 | 1 | AY.67 | 0.000464 |
S | 716 | T716S | Aca | Tca | 1 | 1 | AY.69 | 0.000187 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.79 | 0.001211 |
S | 716 | T716T | acA | acG | 1 | 1 | AY.84 | 0.000437 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
S | 716 | T716D | ACA | GAT | 1 | 1 | AY.9.2 | 0.000037 |
S | 716 | T716N | aCA | aAT | 1 | 1 | AY.9.2 | 0.000037 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.91 | 0.00073 |
S | 716 | T716del | ACA | --- | 1 | 1 | AY.95 | 0.000761 |
S | 716 | T716T | acA | acT | 1 | 1 | AY.98 | 0.000079 |
S | 716 | T716T | acA | acG | 1 | 1 | AY.98.1 | 0.000048 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AY.99 | 0.001049 |
S | 716 | T716T | acA | acG | 1 | 1 | AY.99 | 0.001049 |
S | 716 | T716K | aCa | aAa | 1 | 1 | AY.99.2 | 0.000092 |
S | 716 | T716I | aCa | aTa | 1 | 1 | AZ.3 | 0.00152 |
S | 716 | T716K | aCa | aAa | 1 | 1 | B.1 | 0.000009 |
S | 716 | T716del1 | Aca | -ca | 1 | 1 | B.1 | 0.000009 |
S | 716 | T716T | acA | acG | 1 | 1 | B.1 | 0.000009 |
S | 716 | T716X | ACa | TAa | 1 | 1 | B.1.1 | 0.000018 |
S | 716 | T716M | aCA | aTG | 1 | 1 | B.1.1 | 0.000018 |
S | 716 | T716S | Aca | Tca | 1 | 1 | B.1.1 | 0.000018 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.135 | 0.004695 |
S | 716 | T716A | Aca | Gca | 1 | 1 | B.1.1.141 | 0.002012 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.160 | 0.02381 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.171 | 0.003676 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.187 | 0.00885 |
S | 716 | T716K | aCa | aAa | 1 | 1 | B.1.1.214 | 0.000055 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.221 | 0.010101 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.231 | 0.003096 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.236 | 0.006897 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.237 | 0.005405 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.241 | 0.00207 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.269 | 0.001353 |
S | 716 | T716R | aCa | aGa | 1 | 1 | B.1.1.277 | 0.000759 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.280 | 0.003086 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.307 | 0.002532 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
S | 716 | T716Q | ACa | CAa | 1 | 1 | B.1.1.312 | 0.001912 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.34 | 0.013158 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.368 | 0.003086 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
S | 716 | T716del | ACA | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.374 | 0.002375 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.375 | 0.011905 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.402 | 0.011111 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.404 | 0.015873 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.407 | 0.041667 |
S | 716 | T716del | ACA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.416 | 0.000905 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.432 | 0.001266 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.44 | 0.00241 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.448 | 0.002033 |
S | 716 | T716T | acA | acG | 1 | 1 | B.1.1.467 | 0.019231 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.515 | 0.02 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.524 | 0.020833 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.525 | 0.005464 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.55 | 0.012987 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.1.99 | 0.02381 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.111 | 0.001175 |
S | 716 | T716T | acA | acG | 1 | 1 | B.1.146 | 0.004237 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.160.14 | 0.002119 |
S | 716 | T716T | acA | acT | 1 | 1 | B.1.160.15 | 0.00495 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.160.29 | 0.004219 |
S | 716 | T716S | Aca | Tca | 1 | 1 | B.1.177 | 0.000013 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.15 | 0.000631 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.26 | 0.006993 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.41 | 0.0025 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.47 | 0.012987 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.52 | 0.001757 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.65 | 0.000665 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.76 | 0.002494 |
S | 716 | T716T | acA | acT | 1 | 1 | B.1.177.77 | 0.000726 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.8 | 0.000752 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.83 | 0.001481 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.177.86 | 0.000183 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.179 | 0.003759 |
S | 716 | T716K | aCa | aAa | 1 | 1 | B.1.2 | 0.000009 |
S | 716 | T716del | ACA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.239 | 0.001221 |
S | 716 | T716A | Aca | Gca | 1 | 1 | B.1.243 | 0.00007 |
S | 716 | T716T | acA | acC | 1 | 1 | B.1.258 | 0.000067 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.313 | 0.006579 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.336 | 0.002439 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.349 | 0.000715 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.36.1 | 0.00114 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.36.10 | 0.004785 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.36.18 | 0.00042 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.36.26 | 0.002857 |
S | 716 | T716T | acA | acG | 1 | 1 | B.1.36.27 | 0.000763 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.363 | 0.012987 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.377 | 0.004566 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.382 | 0.008929 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.391 | 0.001127 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.393 | 0.028571 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.397 | 0.004854 |
S | 716 | T716del1 | acA | ac- | 1 | 1 | B.1.400 | 0.000429 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.404 | 0.001302 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.415.1 | 0.007576 |
S | 716 | T716P | Aca | Cca | 1 | 1 | B.1.416 | 0.001269 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.416.1 | 0.001563 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.422 | 0.000812 |
S | 716 | T716K | aCa | aAa | 1 | 1 | B.1.427 | 0.00005 |
S | 716 | T716P | Aca | Cca | 1 | 1 | B.1.427 | 0.00005 |
S | 716 | T716Q | ACa | CAa | 1 | 1 | B.1.427 | 0.00005 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.428 | 0.00102 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.433 | 0.003195 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.467 | 0.04 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.499 | 0.00105 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.503 | 0.002488 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.525 | 0.000113 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.530 | 0.007143 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.533 | 0.009615 |
S | 716 | T716S | Aca | Tca | 1 | 1 | B.1.564 | 0.000426 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.565 | 0.00081 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.568 | 0.001111 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.574 | 0.002151 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.581 | 0.009434 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.588 | 0.00091 |
S | 716 | T716T | acA | acT | 1 | 1 | B.1.596 | 0.000087 |
S | 716 | T716A | Aca | Gca | 1 | 1 | B.1.617.2 | 0.000004 |
S | 716 | T716del | ACA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.625 | 0.002353 |
S | 716 | T716del | ACA | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.627 | 0.00202 |
S | 716 | T716T | acA | acT | 1 | 1 | B.1.634 | 0.003425 |
S | 716 | T716del | ACA | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.78 | 0.008547 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.1.94 | 0.027027 |
S | 716 | T716I | aCa | aTa | 1 | 1 | B.35 | 0.007812 |
S | 716 | T716T | acA | acG | 1 | 1 | C.14 | 0.004329 |
S | 716 | T716del | ACA | --- | 1 | 1 | C.37 | 0.000116 |
S | 716 | T716A | Aca | Gca | 1 | 1 | C.37 | 0.000116 |
S | 716 | T716K | aCa | aAa | 1 | 1 | D.2 | 0.000075 |
S | 716 | T716A | Aca | Gca | 1 | 1 | D.2 | 0.000075 |
S | 716 | T716I | aCa | aTa | 1 | 1 | P.1.10 | 0.000269 |
S | 716 | T716del | ACA | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 716 | T716I | aCa | aTa | 1 | 1 | P.1.14 | 0.000048 |
S | 716 | T716K | aCa | aAa | 1 | 1 | P.1.14 | 0.000048 |
S | 716 | T716M | aCA | aTG | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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