CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 715

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S715P715PsynccCccT493747790.96799723705-23707
S715P715PsynccCccA49371300.026331823705-23707
S715P715PsynccCccG4937280.0056714623705-23707
S715P715SnonsynCccTcc1041020.98076923705-23707
S715P715SnonsynCcCTcT10420.019230823705-23707
S715P715deldelCCC---3636123705-23707
S715P715LnonsyncCccTc19180.94736823705-23707
S715P715LnonsyncCCcTA1910.052631623705-23707
S715P715TnonsynCccAcc1090.923705-23707
S715P715TnonsynCcCAcT1010.123705-23707
S715P715HnonsyncCccAc640.66666723705-23707
S715P715del1delccCcc-630.523705-23707
S715P715del1delCcc-cc630.523705-23707
S715P715HnonsyncCCcAT620.33333323705-23707
S715P715InonsynCCcATc420.523705-23707
S715P715InonsynCCCATT410.2523705-23707
S715P715InonsynCCCATA410.2523705-23707
S715P715NnonsynCCcAAc22123705-23707
S715P715AnonsynCcCGcT22123705-23707
S715P715XnonsynCCCTAA11123705-23707
S715P715QnonsyncCCcAA11123705-23707
S715P715GnonsynCCCGGT11123705-23707
S715P715FnonsynCCCTTT11123705-23707
S715P715YnonsynCCcTAc11123705-23707
S715P715KnonsynCCCAAA11123705-23707

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S715P715PccCccT47794937All0.000914
S715P715PccCccA1304937All0.000025
S715P715PccCccG284937All0.000005
S715P715PccCccT645645B.1.1.4640.949926
S715P715PccCccT576641B.1.1.70.000516
S715P715PccCccA55641B.1.1.70.000049
S715P715PccCccG10641B.1.1.70.000009
S715P715PccCccT500507AY.40.000778
S715P715PccCccA7507AY.40.000011
S715P715PccCccT327327AW.10.996951
S715P715PccCccT293293AY.1010.143698
S715P715PccCccT283283D.20.021237
S715P715PccCccT279279B.290.978947
S715P715PccCccT175183B.1.617.20.000659
S715P715PccCccG4183B.1.617.20.000015
S715P715PccCccA4183B.1.617.20.000015
S715P715PccCccT167168AY.250.001004
S715P715PccCccA1168AY.250.000006
S715P715PccCccT130141AY.30.001293
S715P715PccCccG7141AY.30.00007
S715P715PccCccA4141AY.30.00004
S715P715PccCccT122128B.10.001117
S715P715PccCccA5128B.10.000046
S715P715PccCccG1128B.10.000009
S715P715SCccTcc102104All0.00002
S715P715SCcCTcT2104All0
S715P715PccCccT6269AY.440.000377
S715P715PccCccA769AY.440.000043
S715P715PccCccT6868AY.1030.000422
S715P715PccCccT6464B.1.1.700.021828
S715P715PccCccT6262AY.430.000275
S715P715PccCccT6262B.1.20.000546
S715P715PccCccT6161B.1.10.001107
S715P715PccCccT5661B.1.1770.000737
S715P715PccCccA461B.1.1770.000053
S715P715PccCccG161B.1.1770.000013
S715P715PccCccT5961B.1.4290.001388
S715P715PccCccG161B.1.4290.000024
S715P715PccCccA161B.1.4290.000024
S715P715PccCccT4951B.1.1600.001528
S715P715PccCccA251B.1.1600.000062
S715P715delCCC---3636All0.000007
S715P715PccCccT3636B.1.5260.000846
S715P715PccCccT3436P.10.000536
S715P715PccCccA236P.10.000032
S715P715PccCccT3232AY.1060.010717
S715P715PccCccT2929AY.200.001127
S715P715PccCccT2626AY.1020.000689
S715P715PccCccT2424Q.30.003481
S715P715PccCccT2222AY.4.20.000477
S715P715LcCccTc1819All0.000003
S715P715LcCCcTA119All0
S715P715PccCccT1919AY.1000.000874
S715P715PccCccT1818AY.9.10.001507
S715P715PccCccT1617B.1.3510.000476
S715P715PccCccA117B.1.3510.00003
S715P715PccCccT1616AY.3.10.001364
S715P715PccCccT1616C.180.041451
S715P715PccCccT1515B.1.4360.015432
S715P715PccCccT1314AY.9.20.000477
S715P715PccCccG114AY.9.20.000037
S715P715PccCccT1414B.1.2210.000994
S715P715PccCccT1414B.1.3690.003993
S715P715PccCccT1313AY.1180.000814
S715P715PccCccT1012AY.390.000247
S715P715PccCccA212AY.390.000049
S715P715PccCccT1212B.1.5750.003641
S715P715PccCccT1111B.1.2580.000732
S715P715TCccAcc910All0.000002
S715P715TCcCAcT110All0
S715P715SCccTcc1010AY.440.000061
S715P715PccCccT1010AY.930.002731
S715P715PccCccT99AY.1210.001218
S715P715PccCccT99B0.00115
S715P715SCccTcc99B.1.20.000079
S715P715PccCccT88AY.1170.000676
S715P715PccCccT88AY.330.000534
S715P715SCccTcc88AY.390.000198
S715P715PccCccT88AY.470.000249
S715P715PccCccT77AY.1130.000997
S715P715PccCccT77AY.75.10.001262
S715P715PccCccT77AY.98.10.000339
S715P715PccCccT77B.1.1.3110.002507
S715P715PccCccT77B.1.214.20.004197
S715P715PccCccT77C.370.000812
S715P715PccCccT77P.1.60.013619
S715P715HcCccAc46All0.000001
S715P715del1ccCcc-36All0.000001
S715P715del1Ccc-cc36All0.000001
S715P715HcCCcAT26All0
S715P715PccCccT66AY.1190.000212
S715P715SCccTcc66AY.40.000009
S715P715PccCccT66AY.90.000406
S715P715PccCccT66B.1.1.2220.001224
S715P715PccCccT66B.1.3490.004289
S715P715PccCccA66B.1.4000.002574
S715P715PccCccT66B.1.5960.000523
S715P715PccCccT66B.1.6280.002114
S715P715PccCccT66C.300.010363
S715P715PccCccT55AY.120.00158
S715P715PccCccT35AY.1200.000112
S715P715PccCccA25AY.1200.000074
S715P715PccCccT55AY.290.000079
S715P715PccCccT55AY.39.10.000198
S715P715delCCC---55AY.430.000022
S715P715PccCccT35AY.450.000365
S715P715PccCccA25AY.450.000243
S715P715SCccTcc55B.1.10.000091
S715P715PccCccT35B.1.1.280.000934
S715P715PccCccG15B.1.1.280.000311
S715P715PccCccA15B.1.1.280.000311
S715P715PccCccT55B.1.1.5230.007812
S715P715PccCccT55B.1.177.860.000917
S715P715PccCccT55B.1.5390.087719
S715P715SCccTcc55B.1.617.20.000019
S715P715PccCccT44A.270.006623
S715P715ICCcATc24All0
S715P715ICCCATT14All0
S715P715ICCCATA14All0
S715P715PccCccA24AY.1110.000366
S715P715PccCccT24AY.1110.000366
S715P715PccCccT34AY.260.000085
S715P715PccCccA14AY.260.000028
S715P715PccCccT44AY.420.000161
S715P715SCccTcc44AY.430.000018
S715P715PccCccT24AY.590.001059
S715P715PccCccA24AY.590.001059
S715P715SCccTcc44AY.650.002132
S715P715delCCC---44B.10.000037
S715P715PccCccT44B.1.4270.000202
S715P715SCccTcc44B.1.619.10.002566
S715P715PccCccT34B.1.6210.000266
S715P715PccCccA14B.1.6210.000089
S715P715delCCC---44P.10.000063
S715P715SCccTcc33AY.1030.000019
S715P715PccCccT33AY.280.005671
S715P715SCccTcc33AY.30.00003
S715P715PccCccT33AY.460.000312
S715P715PccCccT33AY.46.60.000217
S715P715SCccTcc33AY.9.10.000251
S715P715PccCccT33AY.99.20.000276
S715P715TCccAcc33B.10.000027
S715P715SCccTcc33B.10.000027
S715P715PccCccT33B.1.1.1170.029126
S715P715PccCccT33B.1.1.4340.001046
S715P715SCccTcc33B.1.1.70.000003
S715P715PccCccT33B.1.2340.000396
S715P715PccCccT33B.1.2430.000209
S715P715PccCccT33B.1.351.20.000908
S715P715PccCccT23B.1.360.000292
S715P715PccCccA13B.1.360.000146
S715P715PccCccT23B.1.466.20.000782
S715P715PccCccA13B.1.466.20.000391
S715P715delCCC---33B.1.617.20.000011
S715P715PccCccA33P.1.140.000143
S715P715ACcCGcT220.111111
S715P715HcCCcAT220.111111
S715P715SCcCTcT220.111111
S715P715NCCcAAc22All0
S715P715ACcCGcT22All0
S715P715PccCccT22AY.130.000322
S715P715PccCccT22AY.230.000139
S715P715delCCC---22AY.250.000012
S715P715SCccTcc22AY.250.000012
S715P715LcCccTc12AY.30.00001
S715P715ICCcATc12AY.30.00001
S715P715LcCCcTA12AY.30.00001
S715P715ICCCATA12AY.30.00001
S715P715SCccTcc22AY.39.10.000079
S715P715SCccTcc22AY.4.20.000043
S715P715PccCccT22AY.46.40.000329
S715P715PccCccT22AY.46.50.000397
S715P715PccCccT22AY.50.000041
S715P715PccCccT22AY.5.30.000675
S715P715PccCccT12AY.550.000917
S715P715PccCccA12AY.550.000917
S715P715PccCccG12AY.60.000041
S715P715PccCccT12AY.60.000041
S715P715PccCccT22AY.70.000392
S715P715SCccTcc22AY.75.10.000361
S715P715PccCccA12AY.780.001541
S715P715PccCccT12AY.780.001541
S715P715PccCccT22AY.840.000875
S715P715TCcCAcT12AY.9.20.000037
S715P715ICCcATc12AY.9.20.000037
S715P715ICCCATT12AY.9.20.000037
S715P715TCccAcc12AY.9.20.000037
S715P715PccCccT22AY.980.000158
S715P715LcCccTc22B0.000256
S715P715LcCccTc22B.10.000018
S715P715TCccAcc22B.1.10.000036
S715P715PccCccT22B.1.1.3060.000877
S715P715SCccTcc22B.1.1.3770.002762
S715P715PccCccT22B.1.1.5190.000079
S715P715delCCC---22B.1.1.70.000002
S715P715PccCccT22B.1.177.210.000153
S715P715PccCccT22B.1.177.330.003289
S715P715PccCccT22B.1.177.60.001953
S715P715del1ccCcc-22B.1.20.000018
S715P715PccCccT22B.1.2100.004264
S715P715PccCccT22B.1.2400.000431
S715P715PccCccT22B.1.258.170.000208
S715P715PccCccT22B.1.3960.001411
S715P715PccCccT22B.1.438.10.000215
S715P715PccCccT22B.1.5270.007407
S715P715PccCccT22B.1.617.10.000258
S715P715PccCccT22B.1.6200.001892
S715P715delCCC---22B.1.6210.000177
S715P715LcCccTc22D.20.00015
S715P715SCccTcc22D.20.00015
S715P715PccCccT22N.40.008511
S715P715delCCC---22P.1.150.000465
S715P715PccCccT22P.30.00319
S715P715PccCccT11A.190.009434
S715P715PccCccT11A.20.000662
S715P715SCccTcc11A.50.001923
S715P715PccCccT11AL.10.012987
S715P715YCCcTAc11All0
S715P715KCCCAAA11All0
S715P715QcCCcAA11All0
S715P715FCCCTTT11All0
S715P715XCCCTAA11All0
S715P715GCCCGGT11All0
S715P715PccCccT11AT.10.005128
S715P715delCCC---11AY.1000.000046
S715P715LcCccTc11AY.1020.000027
S715P715LcCccTc11AY.1030.000006
S715P715delCCC---11AY.1030.000006
S715P715SCccTcc11AY.1130.000142
S715P715LcCccTc11AY.1140.000231
S715P715del1Ccc-cc11AY.1170.000085
S715P715SCccTcc11AY.1190.000035
S715P715SCccTcc11AY.1200.000037
S715P715SCccTcc11AY.120.10.000321
S715P715PccCccT11AY.120.10.000321
S715P715SCccTcc11AY.130.000161
S715P715PccCccA11AY.160.00038
S715P715SCccTcc11AY.200.000039
S715P715PccCccT11AY.23.10.000417
S715P715PccCccA11AY.240.000431
S715P715TCccAcc11AY.250.000006
S715P715PccCccT11AY.270.000065
S715P715HcCccAc11AY.30.00001
S715P715NCCcAAc11AY.30.00001
S715P715QcCCcAA11AY.30.00001
S715P715KCCCAAA11AY.30.00001
S715P715FCCCTTT11AY.30.00001
S715P715PccCccT11AY.320.000532
S715P715PccCccT11AY.340.000097
S715P715PccCccT11AY.34.10.00051
S715P715PccCccT11AY.380.000499
S715P715HcCccAc11AY.390.000025
S715P715PccCccT11AY.4.50.000107
S715P715LcCccTc11AY.430.000004
S715P715TCccAcc11AY.430.000004
S715P715LcCccTc11AY.440.000006
S715P715LcCccTc11AY.450.000122
S715P715SCccTcc11AY.50.000021
S715P715PccCccT11AY.5.40.000277
S715P715PccCccT11AY.530.000288
S715P715PccCccT11AY.580.000907
S715P715PccCccT11AY.610.000105
S715P715delCCC---11AY.670.000464
S715P715SCccTcc11AY.680.000274
S715P715PccCccT11AY.700.000209
S715P715PccCccT11AY.830.001724
S715P715PccCccA11AY.850.000427
S715P715PccCccG11AY.910.00073
S715P715SCccTcc11AY.930.000273
S715P715PccCccT11AY.940.000443
S715P715delCCC---11AY.950.000761
S715P715PccCccT11AZ.20.000821
S715P715HcCccAc11B0.000128
S715P715NCCcAAc11B.10.000009
S715P715LcCccTc11B.1.10.000018
S715P715GCCCGGT11B.1.10.000018
S715P715PccCccT11B.1.1.10.000327
S715P715SCccTcc11B.1.1.10.000327
S715P715PccCccT11B.1.1.1210.002427
S715P715PccCccT11B.1.1.250.000569
S715P715PccCccT11B.1.1.2530.002506
S715P715PccCccT11B.1.1.2790.001121
S715P715SCccTcc11B.1.1.2910.000742
S715P715PccCccT11B.1.1.2940.001266
S715P715PccCccT11B.1.1.3180.000302
S715P715PccCccA11B.1.1.3260.001761
S715P715PccCccT11B.1.1.3290.003846
S715P715PccCccT11B.1.1.330.000421
S715P715LcCccTc11B.1.1.3440.010753
S715P715PccCccT11B.1.1.370.000193
S715P715PccCccT11B.1.1.3720.000689
S715P715delCCC---11B.1.1.3720.000689
S715P715delCCC---11B.1.1.4090.002833
S715P715PccCccT11B.1.1.4480.002033
S715P715SCccTcc11B.1.1.580.005376
S715P715SCccTcc11B.1.1.610.008772
S715P715del1ccCcc-11B.1.1.70.000001
S715P715XCCCTAA11B.1.1.70.000001
S715P715TCccAcc11B.1.1180.006711
S715P715LcCccTc11B.1.1390.000733
S715P715PccCccT11B.1.1570.002985
S715P715PccCccA11B.1.160.100.008065
S715P715PccCccT11B.1.160.160.000929
S715P715SCccTcc11B.1.160.280.002924
S715P715PccCccA11B.1.160.300.002976
S715P715PccCccT11B.1.1660.008475
S715P715PccCccT11B.1.1670.007812
S715P715LcCccTc11B.1.1770.000013
S715P715PccCccT11B.1.177.110.001698
S715P715PccCccT11B.1.177.200.001517
S715P715PccCccT11B.1.177.440.000519
S715P715PccCccT11B.1.177.560.000668
S715P715PccCccT11B.1.177.600.000218
S715P715PccCccT11B.1.177.650.000665
S715P715SCccTcc11B.1.177.720.00339
S715P715SCccTcc11B.1.177.860.000183
S715P715LcCccTc11B.1.20.000009
S715P715delCCC---11B.1.20.000009
S715P715PccCccT11B.1.3240.001605
S715P715SCccTcc11B.1.3510.00003
S715P715PccCccT11B.1.36.290.000517
S715P715PccCccT11B.1.36.360.000602
S715P715PccCccT11B.1.36.80.001
S715P715PccCccT11B.1.3670.000792
S715P715SCccTcc11B.1.3670.000792
S715P715PccCccA11B.1.3990.001934
S715P715PccCccT11B.1.4040.001302
S715P715PccCccT11B.1.4160.001269
S715P715PccCccA11B.1.4560.003268
S715P715PccCccT11B.1.5240.001406
S715P715PccCccT11B.1.5250.000113
S715P715PccCccT11B.1.5410.004425
S715P715PccCccA11B.1.5460.003704
S715P715PccCccT11B.1.5510.00129
S715P715PccCccT11B.1.5640.000426
S715P715PccCccT11B.1.5650.00081
S715P715PccCccT11B.1.5810.009434
S715P715del1Ccc-cc11B.1.5950.000261
S715P715PccCccT11B.1.6000.005848
S715P715PccCccT11B.1.6090.000479
S715P715YCCcTAc11B.1.617.20.000004
S715P715del1Ccc-cc11B.1.617.20.000004
S715P715delCCC---11B.1.6200.000946
S715P715delCCC---11B.1.6270.00202
S715P715SCccTcc11B.1.6370.000073
S715P715delCCC---11B.1.6380.052632
S715P715PccCccT11B.400.000364
S715P715HcCccAc11B.420.033333
S715P715PccCccA11B.450.003831
S715P715PccCccT11C.230.005814
S715P715delCCC---11C.370.000116
S715P715PccCccT11N.50.001767
S715P715PccCccT11P.1.10.000318
S715P715PccCccT11P.1.120.000484
S715P715delCCC---11P.1.130.000898
S715P715PccCccA11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.