CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 709

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S709N709NsynaaTaaC978978123687-23689
S709N709SnonsynaAtaGt1161080.93103523687-23689
S709N709SnonsynAAtTCt11630.025862123687-23689
S709N709SnonsynaATaGC11630.025862123687-23689
S709N709SnonsynAATTCA11620.017241423687-23689
S709N709KnonsynaaTaaG59550.93220323687-23689
S709N709KnonsynaaTaaA5940.067796623687-23689
S709N709TnonsynaAtaCt41380.92682923687-23689
S709N709TnonsynaATaCA4120.048780523687-23689
S709N709TnonsynaATaCC4110.024390223687-23689
S709N709deldelAAT---3434123687-23689
S709N709InonsynaAtaTt32310.9687523687-23689
S709N709InonsynaATaTA3210.0312523687-23689
S709N709YnonsynAatTat2222123687-23689
S709N709DnonsynAatGat1212123687-23689
S709N709HnonsynAatCat44123687-23689
S709N709del1delAat-at22123687-23689
S709N709LnonsynAAtCTt210.523687-23689
S709N709LnonsynAATCTA210.523687-23689
S709N709EnonsynAaTGaA11123687-23689
S709N709FnonsynAAtTTt11123687-23689
S709N709VnonsynAATGTA11123687-23689

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S709N709NaaTaaC978978All0.000187
S709N709NaaTaaC225225B.1.1.2220.0459
S709N709NaaTaaC131131AY.40.000204
S709N709SaAtaGt108116All0.000021
S709N709SAAtTCt3116All0.000001
S709N709SaATaGC3116All0.000001
S709N709SAATTCA2116All0
S709N709NaaTaaC6363AY.46.40.010364
S709N709KaaTaaG5559All0.000011
S709N709KaaTaaA459All0.000001
S709N709NaaTaaC5555AY.430.000244
S709N709NaaTaaC5050B.1.1.5001
S709N709TaAtaCt3841All0.000007
S709N709TaATaCA241All0
S709N709TaATaCC141All0
S709N709NaaTaaC3838AY.1030.000236
S709N709SaAtaGt3636AY.1030.000224
S709N709NaaTaaC3535B.1.20.000308
S709N709delAAT---3434All0.000007
S709N709NaaTaaC3333B.1.1.70.00003
S709N709NaaTaaC3333B.1.4270.001666
S709N709IaAtaTt3132All0.000006
S709N709IaATaTA132All0
S709N709NaaTaaC3232AY.470.000995
S709N709NaaTaaC3131B.1.617.20.000117
S709N709NaaTaaC2424AU.30.050633
S709N709YAatTat2222All0.000004
S709N709NaaTaaC2121AY.250.000126
S709N709NaaTaaC1818AY.440.00011
S709N709NaaTaaC1414B.10.000128
S709N709TaAtaCt1313B.1.20.000114
S709N709DAatGat1212All0.000002
S709N709IaAtaTt1212AY.50.000248
S709N709KaaTaaG1212B.1.1.70.000011
S709N709NaaTaaC1111AY.30.000109
S709N709NaaTaaC1111AY.610.001153
S709N709SaAtaGt1010B.1.617.20.000038
S709N709SaAtaGt88AY.250.000048
S709N709TaAtaCt88AY.30.00008
S709N709NaaTaaC77AA.10.050725
S709N709NaaTaaC77AY.9.10.000586
S709N709NaaTaaC77B.1.1.3050.027027
S709N709SaAtaGt57B.1.1.70.000004
S709N709SAAtTCt27B.1.1.70.000002
S709N709NaaTaaC77Q.10.000884
S709N709NaaTaaC66AY.330.000401
S709N709SaAtaGt66AY.40.000009
S709N709SaAtaGt56AY.430.000022
S709N709SaATaGC16AY.430.000004
S709N709YAatTat66B.1.20.000053
S709N709NaaTaaC66B.1.258.170.000624
S709N709NaaTaaC55AY.1100.000563
S709N709KaaTaaG55AY.40.000008
S709N709delAAT---55AY.430.000022
S709N709IaAtaTt55AY.430.000022
S709N709DAatGat55B.1.1.70.000004
S709N709KaaTaaG55B.1.20.000044
S709N709KaaTaaG55B.1.617.20.000019
S709N709SAATTCA240.111111
S709N709SaATaGC240.111111
S709N709HAatCat44All0.000001
S709N709NaaTaaC44AY.1020.000106
S709N709NaaTaaC44AY.290.000063
S709N709NaaTaaC44AY.390.000099
S709N709NaaTaaC44B.1.10.000073
S709N709KaaTaaG44B.1.1.5190.000159
S709N709TaAtaCt34B.1.1.70.000003
S709N709TaATaCA14B.1.1.70.000001
S709N709YAatTat44B.1.1770.000053
S709N709NaaTaaC44B.1.2430.000278
S709N709KaaTaaG44B.1.4290.000094
S709N709NaaTaaC44B.1.6210.000354
S709N709NaaTaaC44P.10.000063
S709N709delAAT---44P.10.000063
S709N709TaAtaCt330.166667
S709N709SaAtaGt33A.2.5.20.004717
S709N709TaAtaCt13AY.1030.000006
S709N709TaATaCA13AY.1030.000006
S709N709TaATaCC13AY.1030.000006
S709N709NaaTaaC33AY.1180.000188
S709N709NaaTaaC33AY.260.000085
S709N709SaAtaGt33AY.30.00003
S709N709SaAtaGt33AY.330.0002
S709N709delAAT---33B.10.000027
S709N709TaAtaCt33B.1.10.000054
S709N709NaaTaaC33B.1.1.10.00098
S709N709SaAtaGt33B.1.1.5190.000119
S709N709NaaTaaC33B.1.1600.000094
S709N709NaaTaaC33B.1.1770.00004
S709N709HAatCat33B.1.177.120.000455
S709N709NaaTaaC33B.1.221.30.0025
S709N709NaaTaaC33B.1.360.000438
S709N709KaaTaaG33B.1.36.310.005254
S709N709SaAtaGt33C.370.000348
S709N709NaaTaaC33N.50.0053
S709N709del1Aat-at22All0
S709N709LAAtCTt12All0
S709N709LAATCTA12All0
S709N709NaaTaaC22AY.1190.000071
S709N709YAatTat22AY.120.10.000642
S709N709KaaTaaG22AY.16.10.00094
S709N709SaAtaGt22AY.200.000078
S709N709NaaTaaC22AY.200.000078
S709N709delAAT---22AY.250.000012
S709N709NaaTaaC22AY.320.001065
S709N709NaaTaaC22AY.39.10.000079
S709N709NaaTaaC22AY.4.20.000043
S709N709NaaTaaC22AY.4.50.000215
S709N709TaAtaCt22AY.430.000009
S709N709KaaTaaG22AY.430.000009
S709N709NaaTaaC22AY.46.60.000144
S709N709NaaTaaC22AY.660.002139
S709N709TaAtaCt22AY.790.002421
S709N709SaAtaGt22AY.850.000854
S709N709NaaTaaC22AY.850.000854
S709N709NaaTaaC22AY.99.20.000184
S709N709delAAT---22B.1.1.70.000002
S709N709IaAtaTt22B.1.20.000018
S709N709SaAtaGt22B.1.20.000018
S709N709NaaTaaC22B.1.2210.000142
S709N709NaaTaaC22B.1.3690.00057
S709N709SaAtaGt22B.1.4290.000047
S709N709NaaTaaC22B.1.5250.000226
S709N709IaAtaTt22B.1.5960.000174
S709N709delAAT---22B.1.617.20.000008
S709N709delAAT---22B.1.6210.000177
S709N709IaAtaTt22B.1.6370.000146
S709N709delAAT---22P.1.150.000465
S709N709FAAtTTt11All0
S709N709EAaTGaA11All0
S709N709VAATGTA11All0
S709N709delAAT---11AY.1000.000046
S709N709SaAtaGt11AY.1020.000027
S709N709KaaTaaG11AY.1020.000027
S709N709KaaTaaA11AY.1030.000006
S709N709delAAT---11AY.1030.000006
S709N709YAatTat11AY.1050.000643
S709N709DAatGat11AY.1060.000335
S709N709NaaTaaC11AY.1170.000085
S709N709DAatGat11AY.1170.000085
S709N709DAatGat11AY.1190.000035
S709N709NaaTaaC11AY.1210.000135
S709N709SaAtaGt11AY.16.10.00047
S709N709DAatGat11AY.200.000039
S709N709NaaTaaC11AY.230.00007
S709N709SaAtaGt11AY.230.00007
S709N709NaaTaaC11AY.23.10.000417
S709N709KaaTaaA11AY.30.00001
S709N709NaaTaaC11AY.340.000097
S709N709NaaTaaC11AY.380.000499
S709N709SaAtaGt11AY.39.10.00004
S709N709IaAtaTt11AY.40.000002
S709N709YAatTat11AY.40.000002
S709N709TaAtaCt11AY.40.000002
S709N709KaaTaaG11AY.4.20.000022
S709N709DAatGat11AY.430.000004
S709N709IaAtaTt11AY.440.000006
S709N709KaaTaaG11AY.440.000006
S709N709delAAT---11AY.440.000006
S709N709SaAtaGt11AY.440.000006
S709N709IaAtaTt11AY.450.000122
S709N709SaAtaGt11AY.5.40.000277
S709N709NaaTaaC11AY.590.00053
S709N709del1Aat-at11AY.650.000533
S709N709delAAT---11AY.670.000464
S709N709NaaTaaC11AY.7.20.000559
S709N709YAatTat11AY.750.000056
S709N709SaAtaGt11AY.840.000437
S709N709YAatTat11AY.840.000437
S709N709KaaTaaA11AY.9.20.000037
S709N709SaAtaGt11AY.9.20.000037
S709N709VAATGTA11AY.9.20.000037
S709N709EAaTGaA11AY.9.20.000037
S709N709IaATaTA11AY.9.20.000037
S709N709NaaTaaC11AY.960.002075
S709N709SaAtaGt11AY.980.000079
S709N709KaaTaaG11AY.980.000079
S709N709YAatTat11AY.990.001049
S709N709KaaTaaG11B.10.000009
S709N709YAatTat11B.10.000009
S709N709TaAtaCt11B.10.000009
S709N709IaAtaTt11B.10.000009
S709N709YAatTat11B.1.10.000018
S709N709IaAtaTt11B.1.10.000018
S709N709SAAtTCt11B.1.10.000018
S709N709FAAtTTt11B.1.10.000018
S709N709DAatGat11B.1.10.000018
S709N709KaaTaaG11B.1.1.2140.000055
S709N709NaaTaaC11B.1.1.2200.001859
S709N709NaaTaaC11B.1.1.2970.002237
S709N709NaaTaaC11B.1.1.3220.008772
S709N709KaaTaaG11B.1.1.3260.001761
S709N709NaaTaaC11B.1.1.370.000193
S709N709delAAT---11B.1.1.3720.000689
S709N709delAAT---11B.1.1.4090.002833
S709N709NaaTaaC11B.1.1.5190.00004
S709N709NaaTaaC11B.1.1.5260.003546
S709N709IaAtaTt11B.1.1.70.000001
S709N709YAatTat11B.1.1.70.000001
S709N709del1Aat-at11B.1.1.70.000001
S709N709KaaTaaG11B.1.1600.000031
S709N709NaaTaaC11B.1.160.70.002079
S709N709SaAtaGt11B.1.1770.000013
S709N709NaaTaaC11B.1.177.40.000211
S709N709NaaTaaC11B.1.177.440.000519
S709N709delAAT---11B.1.20.000009
S709N709KaaTaaG11B.1.2430.00007
S709N709LAATCTA11B.1.243.20.014493
S709N709SaAtaGt11B.1.258.170.000104
S709N709KaaTaaA11B.1.3510.00003
S709N709NaaTaaC11B.1.3510.00003
S709N709YAatTat11B.1.3510.00003
S709N709IaAtaTt11B.1.3510.00003
S709N709NaaTaaC11B.1.3970.004854
S709N709NaaTaaC11B.1.3980.002976
S709N709NaaTaaC11B.1.4090.000781
S709N709KaaTaaG11B.1.4270.00005
S709N709NaaTaaC11B.1.4290.000024
S709N709KaaTaaG11B.1.4410.009615
S709N709NaaTaaC11B.1.466.20.000391
S709N709NaaTaaC11B.1.4680.005714
S709N709NaaTaaC11B.1.4740.001901
S709N709KaaTaaG11B.1.5260.000024
S709N709NaaTaaC11B.1.5640.000426
S709N709DAatGat11B.1.5860.010989
S709N709SaAtaGt11B.1.5960.000087
S709N709TaAtaCt11B.1.5960.000087
S709N709LAAtCTt11B.1.5960.000087
S709N709HAatCat11B.1.5960.000087
S709N709NaaTaaC11B.1.617.10.000129
S709N709delAAT---11B.1.6200.000946
S709N709delAAT---11B.1.6270.00202
S709N709delAAT---11B.1.6380.052632
S709N709KaaTaaG11B.4.80.071429
S709N709delAAT---11C.370.000116
S709N709SaAtaGt11D.20.000075
S709N709NaaTaaC11D.20.000075
S709N709IaAtaTt11D.20.000075
S709N709SaAtaGt11P.10.000016
S709N709delAAT---11P.1.130.000898
S709N709NaaTaaC11P.1.140.000048
S709N709YAatTat11P.1.150.000232
S709N709SaAtaGt11Q.40.000455