CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 706 | A706V | nonsyn | gCt | gTt | 2789 | 2784 | 0.998207 | 23678-23680 | |
S | 706 | A706V | nonsyn | gCT | gTG | 2789 | 3 | 0.00107565 | 23678-23680 | |
S | 706 | A706V | nonsyn | gCT | gTC | 2789 | 1 | 0.000358551 | 23678-23680 | |
S | 706 | A706V | nonsyn | gCT | gTA | 2789 | 1 | 0.000358551 | 23678-23680 | |
S | 706 | A706A | syn | gcT | gcC | 607 | 468 | 0.771005 | 23678-23680 | |
S | 706 | A706A | syn | gcT | gcG | 607 | 118 | 0.194399 | 23678-23680 | |
S | 706 | A706A | syn | gcT | gcA | 607 | 21 | 0.0345964 | 23678-23680 | |
S | 706 | A706S | nonsyn | Gct | Tct | 567 | 563 | 0.992945 | 23678-23680 | |
S | 706 | A706S | nonsyn | GcT | TcG | 567 | 2 | 0.00352734 | 23678-23680 | |
S | 706 | A706S | nonsyn | GcT | TcC | 567 | 2 | 0.00352734 | 23678-23680 | |
S | 706 | A706P | nonsyn | Gct | Cct | 179 | 179 | 1 | 23678-23680 | |
S | 706 | A706del | del | GCT | --- | 37 | 37 | 1 | 23678-23680 | |
S | 706 | A706G | nonsyn | gCt | gGt | 24 | 22 | 0.916667 | 23678-23680 | |
S | 706 | A706G | nonsyn | gCT | gGA | 24 | 1 | 0.0416667 | 23678-23680 | |
S | 706 | A706G | nonsyn | gCT | gGG | 24 | 1 | 0.0416667 | 23678-23680 | |
S | 706 | A706T | nonsyn | Gct | Act | 13 | 10 | 0.769231 | 23678-23680 | |
S | 706 | A706T | nonsyn | GcT | AcG | 13 | 2 | 0.153846 | 23678-23680 | |
S | 706 | A706T | nonsyn | GcT | AcC | 13 | 1 | 0.0769231 | 23678-23680 | |
S | 706 | A706D | nonsyn | gCt | gAt | 4 | 4 | 1 | 23678-23680 | |
S | 706 | A706F | nonsyn | GCt | TTt | 4 | 3 | 0.75 | 23678-23680 | |
S | 706 | A706F | nonsyn | GCT | TTC | 4 | 1 | 0.25 | 23678-23680 | |
S | 706 | A706del2 | del | GCT | --N | 3 | 1 | 0.333333 | 23678-23680 | |
S | 706 | A706del2 | del | GCT | --G | 3 | 1 | 0.333333 | 23678-23680 | |
S | 706 | A706del2 | del | gCT | g-- | 3 | 1 | 0.333333 | 23678-23680 | |
S | 706 | A706L | nonsyn | GCT | TTG | 1 | 1 | 1 | 23678-23680 | |
S | 706 | A706del1 | del | gCt | g-t | 1 | 1 | 1 | 23678-23680 | |
S | 706 | A706M | nonsyn | GCT | ATG | 1 | 1 | 1 | 23678-23680 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 706 | A706V | gCt | gTt | 2784 | 2789 | All | 0.000532 |
S | 706 | A706V | gCT | gTG | 3 | 2789 | All | 0.000001 |
S | 706 | A706V | gCT | gTC | 1 | 2789 | All | 0 |
S | 706 | A706V | gCT | gTA | 1 | 2789 | All | 0 |
S | 706 | A706V | gCt | gTt | 1828 | 1828 | B.1.1.7 | 0.001636 |
S | 706 | A706A | gcT | gcC | 468 | 607 | All | 0.00009 |
S | 706 | A706A | gcT | gcG | 118 | 607 | All | 0.000023 |
S | 706 | A706A | gcT | gcA | 21 | 607 | All | 0.000004 |
S | 706 | A706S | Gct | Tct | 563 | 567 | All | 0.000108 |
S | 706 | A706S | GcT | TcG | 2 | 567 | All | 0 |
S | 706 | A706S | GcT | TcC | 2 | 567 | All | 0 |
S | 706 | A706A | gcT | gcC | 268 | 338 | AY.4 | 0.000417 |
S | 706 | A706A | gcT | gcG | 68 | 338 | AY.4 | 0.000106 |
S | 706 | A706A | gcT | gcA | 2 | 338 | AY.4 | 0.000003 |
S | 706 | A706P | Gct | Cct | 179 | 179 | All | 0.000034 |
S | 706 | A706V | gCt | gTt | 113 | 113 | AY.44 | 0.000688 |
S | 706 | A706V | gCt | gTt | 103 | 103 | AY.4 | 0.00016 |
S | 706 | A706S | Gct | Tct | 102 | 102 | AY.4 | 0.000159 |
S | 706 | A706S | Gct | Tct | 91 | 91 | B.1.1.7 | 0.000081 |
S | 706 | A706V | gCt | gTt | 90 | 90 | AY.43 | 0.000399 |
S | 706 | A706V | gCt | gTt | 81 | 81 | AY.29 | 0.001278 |
S | 706 | A706P | Gct | Cct | 73 | 73 | AY.103 | 0.000453 |
S | 706 | A706A | gcT | gcC | 67 | 67 | R.1 | 0.006031 |
S | 706 | A706V | gCt | gTt | 48 | 48 | B.1.2 | 0.000423 |
S | 706 | A706P | Gct | Cct | 47 | 47 | AY.99.2 | 0.004331 |
S | 706 | A706S | Gct | Tct | 44 | 44 | AY.44 | 0.000268 |
S | 706 | A706S | Gct | Tct | 42 | 42 | B.1.617.2 | 0.000158 |
S | 706 | A706S | Gct | Tct | 40 | 40 | AY.103 | 0.000248 |
S | 706 | A706A | gcT | gcG | 34 | 39 | B.1.177 | 0.000448 |
S | 706 | A706A | gcT | gcC | 5 | 39 | B.1.177 | 0.000066 |
S | 706 | A706V | gCt | gTt | 38 | 38 | B.1.617.2 | 0.000143 |
S | 706 | A706del | GCT | --- | 37 | 37 | All | 0.000007 |
S | 706 | A706V | gCt | gTt | 36 | 36 | AY.103 | 0.000224 |
S | 706 | A706V | gCt | gTt | 28 | 28 | B.1 | 0.000256 |
S | 706 | A706A | gcT | gcA | 18 | 28 | B.1.1.7 | 0.000016 |
S | 706 | A706A | gcT | gcC | 10 | 28 | B.1.1.7 | 0.000009 |
S | 706 | A706A | gcT | gcC | 26 | 26 | B.1.617.2 | 0.000098 |
S | 706 | A706S | Gct | Tct | 25 | 25 | B.1.115 | 0.543478 |
S | 706 | A706G | gCt | gGt | 22 | 24 | All | 0.000004 |
S | 706 | A706G | gCT | gGA | 1 | 24 | All | 0 |
S | 706 | A706G | gCT | gGG | 1 | 24 | All | 0 |
S | 706 | A706V | gCt | gTt | 20 | 20 | B.1.351 | 0.000595 |
S | 706 | A706S | Gct | Tct | 19 | 19 | AY.102 | 0.000504 |
S | 706 | A706V | gCt | gTt | 19 | 19 | AY.33 | 0.001269 |
S | 706 | A706V | gCt | gTt | 14 | 17 | B.1.1 | 0.000254 |
S | 706 | A706V | gCT | gTG | 2 | 17 | B.1.1 | 0.000036 |
S | 706 | A706V | gCT | gTC | 1 | 17 | B.1.1 | 0.000018 |
S | 706 | A706V | gCt | gTt | 17 | 17 | B.1.1.519 | 0.000675 |
S | 706 | A706S | Gct | Tct | 16 | 16 | AY.25 | 0.000096 |
S | 706 | A706S | Gct | Tct | 16 | 16 | AY.43 | 0.000071 |
S | 706 | A706V | gCt | gTt | 15 | 15 | B.1.177 | 0.000198 |
S | 706 | A706V | gCt | gTt | 14 | 14 | AY.25 | 0.000084 |
S | 706 | A706S | Gct | Tct | 12 | 14 | B.1.1 | 0.000218 |
S | 706 | A706S | GcT | TcC | 1 | 14 | B.1.1 | 0.000018 |
S | 706 | A706S | GcT | TcG | 1 | 14 | B.1.1 | 0.000018 |
S | 706 | A706P | Gct | Cct | 14 | 14 | B.1.1.7 | 0.000013 |
S | 706 | A706A | gcT | gcC | 14 | 14 | B.1.243 | 0.000974 |
S | 706 | A706T | Gct | Act | 10 | 13 | All | 0.000002 |
S | 706 | A706T | GcT | AcG | 2 | 13 | All | 0 |
S | 706 | A706T | GcT | AcC | 1 | 13 | All | 0 |
S | 706 | A706V | gCt | gTt | 13 | 13 | B.1.526 | 0.000306 |
S | 706 | A706S | Gct | Tct | 12 | 12 | AY.29 | 0.000189 |
S | 706 | A706V | gCt | gTt | 12 | 12 | AY.4.2 | 0.00026 |
S | 706 | A706G | gCt | gGt | 12 | 12 | AY.44 | 0.000073 |
S | 706 | A706V | gCt | gTt | 11 | 11 | AY.5 | 0.000227 |
S | 706 | A706V | gCt | gTt | 11 | 11 | B.1.621 | 0.000974 |
S | 706 | A706V | gCt | gTt | 10 | 10 | AY.3 | 0.000099 |
S | 706 | A706S | Gct | Tct | 10 | 10 | AY.98.1 | 0.000484 |
S | 706 | A706A | gcT | gcC | 9 | 9 | AY.103 | 0.000056 |
S | 706 | A706V | gCt | gTt | 9 | 9 | AY.120 | 0.000335 |
S | 706 | A706V | gCt | gTt | 9 | 9 | AY.14 | 0.000792 |
S | 706 | A706S | Gct | Tct | 9 | 9 | AY.39 | 0.000222 |
S | 706 | A706S | Gct | Tct | 9 | 9 | B.1 | 0.000082 |
S | 706 | A706A | gcT | gcG | 4 | 9 | B.1.1 | 0.000073 |
S | 706 | A706A | gcT | gcC | 4 | 9 | B.1.1 | 0.000073 |
S | 706 | A706A | gcT | gcA | 1 | 9 | B.1.1 | 0.000018 |
S | 706 | A706V | gCt | gTt | 9 | 9 | B.1.243 | 0.000626 |
S | 706 | A706A | gcT | gcC | 9 | 9 | B.1.526 | 0.000212 |
S | 706 | A706V | gCt | gTt | 9 | 9 | P.1 | 0.000142 |
S | 706 | A706V | gCt | gTt | 8 | 8 | B.1.160 | 0.00025 |
S | 706 | A706V | gCt | gTt | 7 | 7 | AY.119 | 0.000247 |
S | 706 | A706V | gCt | gTt | 7 | 7 | AY.3.1 | 0.000597 |
S | 706 | A706V | gCt | gTt | 7 | 7 | B.1.1.37 | 0.00135 |
S | 706 | A706V | gCt | gTt | 6 | 6 | AY.100 | 0.000276 |
S | 706 | A706P | Gct | Cct | 6 | 6 | AY.4 | 0.000009 |
S | 706 | A706S | Gct | Tct | 6 | 6 | AY.4.2 | 0.00013 |
S | 706 | A706V | gCt | gTt | 6 | 6 | AY.42 | 0.000241 |
S | 706 | A706A | gcT | gcC | 6 | 6 | AY.43 | 0.000027 |
S | 706 | A706S | Gct | Tct | 6 | 6 | B.1.526 | 0.000141 |
S | 706 | A706S | Gct | Tct | 5 | 5 | AE.8 | 0.002445 |
S | 706 | A706S | Gct | Tct | 5 | 5 | AY.119 | 0.000177 |
S | 706 | A706S | Gct | Tct | 5 | 5 | AY.27 | 0.000324 |
S | 706 | A706A | gcT | gcC | 4 | 5 | AY.44 | 0.000024 |
S | 706 | A706A | gcT | gcG | 1 | 5 | AY.44 | 0.000006 |
S | 706 | A706V | gCt | gTt | 5 | 5 | AY.46.3 | 0.004669 |
S | 706 | A706V | gCt | gTt | 5 | 5 | AY.47 | 0.000156 |
S | 706 | A706V | gCt | gTt | 3 | 5 | AY.9.2 | 0.00011 |
S | 706 | A706V | gCT | gTG | 1 | 5 | AY.9.2 | 0.000037 |
S | 706 | A706V | gCT | gTA | 1 | 5 | AY.9.2 | 0.000037 |
S | 706 | A706S | Gct | Tct | 3 | 5 | B.1.596 | 0.000261 |
S | 706 | A706S | GcT | TcG | 1 | 5 | B.1.596 | 0.000087 |
S | 706 | A706S | GcT | TcC | 1 | 5 | B.1.596 | 0.000087 |
S | 706 | A706V | gCt | gTt | 5 | 5 | Q.1 | 0.000632 |
S | 706 | A706D | gCt | gAt | 4 | 4 | All | 0.000001 |
S | 706 | A706F | GCt | TTt | 3 | 4 | All | 0.000001 |
S | 706 | A706F | GCT | TTC | 1 | 4 | All | 0 |
S | 706 | A706S | Gct | Tct | 4 | 4 | AY.120 | 0.000149 |
S | 706 | A706V | gCt | gTt | 4 | 4 | AY.39 | 0.000099 |
S | 706 | A706del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
S | 706 | A706V | gCt | gTt | 4 | 4 | AY.6 | 0.000165 |
S | 706 | A706del | GCT | --- | 4 | 4 | B.1 | 0.000037 |
S | 706 | A706A | gcT | gcC | 3 | 4 | B.1 | 0.000027 |
S | 706 | A706A | gcT | gcG | 1 | 4 | B.1 | 0.000009 |
S | 706 | A706S | Gct | Tct | 4 | 4 | B.1.177 | 0.000053 |
S | 706 | A706P | Gct | Cct | 4 | 4 | B.1.177.52 | 0.00703 |
S | 706 | A706S | Gct | Tct | 4 | 4 | B.1.2 | 0.000035 |
S | 706 | A706A | gcT | gcG | 4 | 4 | B.1.36.1 | 0.004561 |
S | 706 | A706V | gCt | gTt | 4 | 4 | B.1.595 | 0.001044 |
S | 706 | A706V | gCt | gTt | 4 | 4 | D.2 | 0.0003 |
S | 706 | A706del2 | GCT | --N | 1 | 3 | All | 0 |
S | 706 | A706del2 | GCT | --G | 1 | 3 | All | 0 |
S | 706 | A706del2 | gCT | g-- | 1 | 3 | All | 0 |
S | 706 | A706V | gCt | gTt | 3 | 3 | AY.102 | 0.00008 |
S | 706 | A706A | gcT | gcC | 3 | 3 | AY.109 | 0.002219 |
S | 706 | A706del | GCT | --- | 3 | 3 | AY.25 | 0.000018 |
S | 706 | A706A | gcT | gcC | 3 | 3 | AY.25 | 0.000018 |
S | 706 | A706P | Gct | Cct | 3 | 3 | AY.30 | 0.001187 |
S | 706 | A706A | gcT | gcC | 3 | 3 | AY.39 | 0.000074 |
S | 706 | A706A | gcT | gcC | 3 | 3 | AY.39.2 | 0.004622 |
S | 706 | A706V | gCt | gTt | 3 | 3 | AY.45 | 0.000365 |
S | 706 | A706V | gCt | gTt | 3 | 3 | AY.46 | 0.000312 |
S | 706 | A706V | gCt | gTt | 3 | 3 | AY.54 | 0.000286 |
S | 706 | A706V | gCt | gTt | 3 | 3 | AY.75 | 0.000168 |
S | 706 | A706P | Gct | Cct | 3 | 3 | B.1.177 | 0.00004 |
S | 706 | A706V | gCt | gTt | 3 | 3 | B.1.177.16 | 0.001993 |
S | 706 | A706V | gCt | gTt | 3 | 3 | B.1.177.37 | 0.081081 |
S | 706 | A706S | Gct | Tct | 3 | 3 | B.1.177.5 | 0.003727 |
S | 706 | A706S | Gct | Tct | 3 | 3 | B.1.177.6 | 0.00293 |
S | 706 | A706V | gCt | gTt | 3 | 3 | B.1.177.60 | 0.000655 |
S | 706 | A706S | Gct | Tct | 3 | 3 | B.1.362 | 0.004622 |
S | 706 | A706V | gCt | gTt | 3 | 3 | B.1.550 | 0.041096 |
S | 706 | A706V | gCt | gTt | 3 | 3 | B.1.575 | 0.00091 |
S | 706 | A706T | GcT | AcC | 1 | 3 | B.1.596 | 0.000087 |
S | 706 | A706T | GcT | AcG | 1 | 3 | B.1.596 | 0.000087 |
S | 706 | A706T | Gct | Act | 1 | 3 | B.1.596 | 0.000087 |
S | 706 | A706del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 706 | A706del | GCT | --- | 3 | 3 | P.1 | 0.000047 |
S | 706 | A706A | gcT | gcC | 3 | 3 | P.1 | 0.000047 |
S | 706 | A706A | gcT | gcC | 3 | 3 | P.1.14 | 0.000143 |
S | 706 | A706del | GCT | --- | 2 | 2 | 0.111111 | |
S | 706 | A706P | Gct | Cct | 2 | 2 | AY.110 | 0.000225 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.113 | 0.000285 |
S | 706 | A706S | Gct | Tct | 2 | 2 | AY.116 | 0.000574 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.118 | 0.000125 |
S | 706 | A706S | Gct | Tct | 2 | 2 | AY.121 | 0.000271 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.16 | 0.000759 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.23 | 0.000139 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.36 | 0.000296 |
S | 706 | A706S | Gct | Tct | 2 | 2 | AY.39.1 | 0.000079 |
S | 706 | A706G | gCt | gGt | 2 | 2 | AY.4.5 | 0.000215 |
S | 706 | A706P | Gct | Cct | 2 | 2 | AY.43 | 0.000009 |
S | 706 | A706T | Gct | Act | 2 | 2 | AY.44 | 0.000012 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.46.6 | 0.000144 |
S | 706 | A706S | Gct | Tct | 2 | 2 | AY.47 | 0.000062 |
S | 706 | A706S | Gct | Tct | 2 | 2 | AY.5 | 0.000041 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
S | 706 | A706P | Gct | Cct | 2 | 2 | AY.62 | 0.000871 |
S | 706 | A706V | gCt | gTt | 2 | 2 | AY.73 | 0.001331 |
S | 706 | A706A | gcT | gcC | 2 | 2 | AY.9 | 0.000135 |
S | 706 | A706G | gCT | gGG | 1 | 2 | AY.9.2 | 0.000037 |
S | 706 | A706G | gCT | gGA | 1 | 2 | AY.9.2 | 0.000037 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B | 0.000256 |
S | 706 | A706del2 | GCT | --G | 1 | 2 | B.1 | 0.000009 |
S | 706 | A706del2 | GCT | --N | 1 | 2 | B.1 | 0.000009 |
S | 706 | A706F | GCt | TTt | 1 | 2 | B.1.1 | 0.000018 |
S | 706 | A706F | GCT | TTC | 1 | 2 | B.1.1 | 0.000018 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.1.138 | 0.012121 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.1.198 | 0.002937 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.1.219 | 0.01 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.1.222 | 0.000408 |
S | 706 | A706S | Gct | Tct | 2 | 2 | B.1.1.4 | 0.005952 |
S | 706 | A706S | Gct | Tct | 2 | 2 | B.1.1.519 | 0.000079 |
S | 706 | A706del | GCT | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 706 | A706G | gCt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.177.12 | 0.000303 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.177.15 | 0.001262 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.177.81 | 0.000379 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.240 | 0.000431 |
S | 706 | A706S | Gct | Tct | 2 | 2 | B.1.240 | 0.000431 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.36 | 0.000292 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.36.38 | 0.003284 |
S | 706 | A706S | Gct | Tct | 2 | 2 | B.1.36.8 | 0.002 |
S | 706 | A706A | gcT | gcG | 2 | 2 | B.1.401 | 0.016393 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.427 | 0.000101 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.517 | 0.000854 |
S | 706 | A706P | Gct | Cct | 2 | 2 | B.1.525 | 0.000226 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.609 | 0.000959 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.617.1 | 0.000258 |
S | 706 | A706P | Gct | Cct | 2 | 2 | B.1.617.2 | 0.000008 |
S | 706 | A706G | gCt | gGt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 706 | A706A | gcT | gcC | 2 | 2 | B.1.618 | 0.008065 |
S | 706 | A706del | GCT | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 706 | A706V | gCt | gTt | 2 | 2 | B.1.637 | 0.000146 |
S | 706 | A706V | gCt | gTt | 2 | 2 | C.37 | 0.000232 |
S | 706 | A706A | gcT | gcG | 2 | 2 | C.37 | 0.000232 |
S | 706 | A706S | Gct | Tct | 2 | 2 | P.1.14 | 0.000096 |
S | 706 | A706V | gCt | gTt | 2 | 2 | P.1.15 | 0.000465 |
S | 706 | A706del | GCT | --- | 2 | 2 | P.1.15 | 0.000465 |
S | 706 | A706P | Gct | Cct | 2 | 2 | P.3 | 0.00319 |
S | 706 | A706V | gCt | gTt | 2 | 2 | W.4 | 0.002703 |
S | 706 | A706T | Gct | Act | 1 | 1 | 0.055556 | |
S | 706 | A706D | gCt | gAt | 1 | 1 | 0.055556 | |
S | 706 | A706V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AD.2 | 0.000219 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AH.2 | 0.012048 |
S | 706 | A706del1 | gCt | g-t | 1 | 1 | All | 0 |
S | 706 | A706M | GCT | ATG | 1 | 1 | All | 0 |
S | 706 | A706L | GCT | TTG | 1 | 1 | All | 0 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AM.4 | 0.003571 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.100 | 0.000046 |
S | 706 | A706del | GCT | --- | 1 | 1 | AY.100 | 0.000046 |
S | 706 | A706T | Gct | Act | 1 | 1 | AY.103 | 0.000006 |
S | 706 | A706del | GCT | --- | 1 | 1 | AY.103 | 0.000006 |
S | 706 | A706G | gCt | gGt | 1 | 1 | AY.103 | 0.000006 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.111 | 0.000183 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.114 | 0.000231 |
S | 706 | A706D | gCt | gAt | 1 | 1 | AY.114 | 0.000231 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.116.1 | 0.000311 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.117 | 0.000085 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
S | 706 | A706F | GCt | TTt | 1 | 1 | AY.119 | 0.000035 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.12 | 0.000316 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.2 | 0.000356 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.23 | 0.00007 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.25 | 0.000006 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.26 | 0.000028 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.29 | 0.000016 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.3 | 0.00001 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.3 | 0.00001 |
S | 706 | A706del | GCT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.34 | 0.000097 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.39.1 | 0.00004 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
S | 706 | A706G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
S | 706 | A706F | GCt | TTt | 1 | 1 | AY.4 | 0.000002 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.41 | 0.000294 |
S | 706 | A706A | gcT | gcG | 1 | 1 | AY.42 | 0.00004 |
S | 706 | A706T | Gct | Act | 1 | 1 | AY.43 | 0.000004 |
S | 706 | A706del | GCT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.46 | 0.000104 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.46.2 | 0.000635 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.46.6 | 0.000072 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.47 | 0.000031 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.48 | 0.000465 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.5 | 0.000021 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.51 | 0.000909 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.51 | 0.000909 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.54 | 0.000095 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.57 | 0.000656 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.6 | 0.000041 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.6 | 0.000041 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.60 | 0.000938 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.62 | 0.000436 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
S | 706 | A706del2 | gCT | g-- | 1 | 1 | AY.67 | 0.000464 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.71 | 0.000475 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.75 | 0.000056 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.75 | 0.000056 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
S | 706 | A706P | Gct | Cct | 1 | 1 | AY.79 | 0.001211 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.9.1 | 0.000084 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
S | 706 | A706D | gCt | gAt | 1 | 1 | AY.9.2 | 0.000037 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.97 | 0.001701 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.98 | 0.000079 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.98.1 | 0.000048 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
S | 706 | A706S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
S | 706 | A706A | gcT | gcC | 1 | 1 | AY.99.2 | 0.000092 |
S | 706 | A706V | gCt | gTt | 1 | 1 | AZ.2 | 0.000821 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B | 0.000128 |
S | 706 | A706P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
S | 706 | A706G | gCt | gGt | 1 | 1 | B.1 | 0.000009 |
S | 706 | A706P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
S | 706 | A706T | GcT | AcG | 1 | 1 | B.1.1 | 0.000018 |
S | 706 | A706G | gCt | gGt | 1 | 1 | B.1.1 | 0.000018 |
S | 706 | A706L | GCT | TTG | 1 | 1 | B.1.1 | 0.000018 |
S | 706 | A706M | GCT | ATG | 1 | 1 | B.1.1 | 0.000018 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.164 | 0.005155 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.230 | 0.009174 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.273 | 0.006757 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.1.344 | 0.010753 |
S | 706 | A706del | GCT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 706 | A706T | Gct | Act | 1 | 1 | B.1.1.409 | 0.002833 |
S | 706 | A706del | GCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.432 | 0.001266 |
S | 706 | A706A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 706 | A706A | gcT | gcC | 1 | 1 | B.1.1.523 | 0.001563 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.1.525 | 0.005464 |
S | 706 | A706T | Gct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.110.3 | 0.000718 |
S | 706 | A706P | Gct | Cct | 1 | 1 | B.1.110.3 | 0.000718 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.146 | 0.004237 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.160.7 | 0.002079 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.177.18 | 0.00116 |
S | 706 | A706A | gcT | gcC | 1 | 1 | B.1.177.21 | 0.000076 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.177.62 | 0.001192 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.177.83 | 0.001481 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.177.87 | 0.000728 |
S | 706 | A706del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 706 | A706D | gCt | gAt | 1 | 1 | B.1.2 | 0.000009 |
S | 706 | A706A | gcT | gcC | 1 | 1 | B.1.2 | 0.000009 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.206 | 0.000816 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.214.2 | 0.0006 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
S | 706 | A706P | Gct | Cct | 1 | 1 | B.1.229 | 0.009709 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.232 | 0.000537 |
S | 706 | A706P | Gct | Cct | 1 | 1 | B.1.234 | 0.000132 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.258 | 0.000067 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.258 | 0.000067 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.258.22 | 0.002667 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.264 | 0.012346 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.298 | 0.002114 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.36 | 0.000146 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.36.1 | 0.00114 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.36.31 | 0.001751 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.36.36 | 0.000602 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.36.9 | 0.003215 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.369 | 0.000285 |
S | 706 | A706T | Gct | Act | 1 | 1 | B.1.396 | 0.000706 |
S | 706 | A706A | gcT | gcG | 1 | 1 | B.1.428 | 0.00102 |
S | 706 | A706A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.478 | 0.011765 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.499 | 0.00105 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.525 | 0.000113 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
S | 706 | A706T | Gct | Act | 1 | 1 | B.1.561 | 0.000397 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.568 | 0.001111 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.595.3 | 0.026316 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
S | 706 | A706del1 | gCt | g-t | 1 | 1 | B.1.617.1 | 0.000129 |
S | 706 | A706del | GCT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 706 | A706del | GCT | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.630 | 0.005236 |
S | 706 | A706P | Gct | Cct | 1 | 1 | B.1.637 | 0.000073 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.1.637 | 0.000073 |
S | 706 | A706del | GCT | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.1.88.1 | 0.004808 |
S | 706 | A706S | Gct | Tct | 1 | 1 | B.39 | 0.002331 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.4 | 0.002208 |
S | 706 | A706A | gcT | gcC | 1 | 1 | B.40 | 0.000364 |
S | 706 | A706P | Gct | Cct | 1 | 1 | B.6 | 0.00091 |
S | 706 | A706V | gCt | gTt | 1 | 1 | B.6.6 | 0.000889 |
S | 706 | A706V | gCt | gTt | 1 | 1 | C.1 | 0.002392 |
S | 706 | A706S | Gct | Tct | 1 | 1 | C.37 | 0.000116 |
S | 706 | A706del | GCT | --- | 1 | 1 | C.37 | 0.000116 |
S | 706 | A706P | Gct | Cct | 1 | 1 | C.37 | 0.000116 |
S | 706 | A706S | Gct | Tct | 1 | 1 | P.1 | 0.000016 |
S | 706 | A706S | Gct | Tct | 1 | 1 | P.1.12 | 0.000484 |
S | 706 | A706del | GCT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 706 | A706V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
S | 706 | A706S | Gct | Tct | 1 | 1 | P.2 | 0.000187 |
S | 706 | A706V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
S | 706 | A706S | Gct | Tct | 1 | 1 | Q.1 | 0.000126 |
S | 706 | A706A | gcT | gcC | 1 | 1 | Q.3 | 0.000145 |
S | 706 | A706S | Gct | Tct | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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