CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 706

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S706A706VnonsyngCtgTt278927840.99820723678-23680
S706A706VnonsyngCTgTG278930.0010756523678-23680
S706A706VnonsyngCTgTC278910.00035855123678-23680
S706A706VnonsyngCTgTA278910.00035855123678-23680
S706A706AsyngcTgcC6074680.77100523678-23680
S706A706AsyngcTgcG6071180.19439923678-23680
S706A706AsyngcTgcA607210.034596423678-23680
S706A706SnonsynGctTct5675630.99294523678-23680
S706A706SnonsynGcTTcG56720.0035273423678-23680
S706A706SnonsynGcTTcC56720.0035273423678-23680
S706A706PnonsynGctCct179179123678-23680
S706A706deldelGCT---3737123678-23680
S706A706GnonsyngCtgGt24220.91666723678-23680
S706A706GnonsyngCTgGA2410.041666723678-23680
S706A706GnonsyngCTgGG2410.041666723678-23680
S706A706TnonsynGctAct13100.76923123678-23680
S706A706TnonsynGcTAcG1320.15384623678-23680
S706A706TnonsynGcTAcC1310.076923123678-23680
S706A706DnonsyngCtgAt44123678-23680
S706A706FnonsynGCtTTt430.7523678-23680
S706A706FnonsynGCTTTC410.2523678-23680
S706A706del2delGCT--N310.33333323678-23680
S706A706del2delGCT--G310.33333323678-23680
S706A706del2delgCTg--310.33333323678-23680
S706A706LnonsynGCTTTG11123678-23680
S706A706del1delgCtg-t11123678-23680
S706A706MnonsynGCTATG11123678-23680

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S706A706VgCtgTt27842789All0.000532
S706A706VgCTgTG32789All0.000001
S706A706VgCTgTC12789All0
S706A706VgCTgTA12789All0
S706A706VgCtgTt18281828B.1.1.70.001636
S706A706AgcTgcC468607All0.00009
S706A706AgcTgcG118607All0.000023
S706A706AgcTgcA21607All0.000004
S706A706SGctTct563567All0.000108
S706A706SGcTTcG2567All0
S706A706SGcTTcC2567All0
S706A706AgcTgcC268338AY.40.000417
S706A706AgcTgcG68338AY.40.000106
S706A706AgcTgcA2338AY.40.000003
S706A706PGctCct179179All0.000034
S706A706VgCtgTt113113AY.440.000688
S706A706VgCtgTt103103AY.40.00016
S706A706SGctTct102102AY.40.000159
S706A706SGctTct9191B.1.1.70.000081
S706A706VgCtgTt9090AY.430.000399
S706A706VgCtgTt8181AY.290.001278
S706A706PGctCct7373AY.1030.000453
S706A706AgcTgcC6767R.10.006031
S706A706VgCtgTt4848B.1.20.000423
S706A706PGctCct4747AY.99.20.004331
S706A706SGctTct4444AY.440.000268
S706A706SGctTct4242B.1.617.20.000158
S706A706SGctTct4040AY.1030.000248
S706A706AgcTgcG3439B.1.1770.000448
S706A706AgcTgcC539B.1.1770.000066
S706A706VgCtgTt3838B.1.617.20.000143
S706A706delGCT---3737All0.000007
S706A706VgCtgTt3636AY.1030.000224
S706A706VgCtgTt2828B.10.000256
S706A706AgcTgcA1828B.1.1.70.000016
S706A706AgcTgcC1028B.1.1.70.000009
S706A706AgcTgcC2626B.1.617.20.000098
S706A706SGctTct2525B.1.1150.543478
S706A706GgCtgGt2224All0.000004
S706A706GgCTgGA124All0
S706A706GgCTgGG124All0
S706A706VgCtgTt2020B.1.3510.000595
S706A706SGctTct1919AY.1020.000504
S706A706VgCtgTt1919AY.330.001269
S706A706VgCtgTt1417B.1.10.000254
S706A706VgCTgTG217B.1.10.000036
S706A706VgCTgTC117B.1.10.000018
S706A706VgCtgTt1717B.1.1.5190.000675
S706A706SGctTct1616AY.250.000096
S706A706SGctTct1616AY.430.000071
S706A706VgCtgTt1515B.1.1770.000198
S706A706VgCtgTt1414AY.250.000084
S706A706SGctTct1214B.1.10.000218
S706A706SGcTTcC114B.1.10.000018
S706A706SGcTTcG114B.1.10.000018
S706A706PGctCct1414B.1.1.70.000013
S706A706AgcTgcC1414B.1.2430.000974
S706A706TGctAct1013All0.000002
S706A706TGcTAcG213All0
S706A706TGcTAcC113All0
S706A706VgCtgTt1313B.1.5260.000306
S706A706SGctTct1212AY.290.000189
S706A706VgCtgTt1212AY.4.20.00026
S706A706GgCtgGt1212AY.440.000073
S706A706VgCtgTt1111AY.50.000227
S706A706VgCtgTt1111B.1.6210.000974
S706A706VgCtgTt1010AY.30.000099
S706A706SGctTct1010AY.98.10.000484
S706A706AgcTgcC99AY.1030.000056
S706A706VgCtgTt99AY.1200.000335
S706A706VgCtgTt99AY.140.000792
S706A706SGctTct99AY.390.000222
S706A706SGctTct99B.10.000082
S706A706AgcTgcG49B.1.10.000073
S706A706AgcTgcC49B.1.10.000073
S706A706AgcTgcA19B.1.10.000018
S706A706VgCtgTt99B.1.2430.000626
S706A706AgcTgcC99B.1.5260.000212
S706A706VgCtgTt99P.10.000142
S706A706VgCtgTt88B.1.1600.00025
S706A706VgCtgTt77AY.1190.000247
S706A706VgCtgTt77AY.3.10.000597
S706A706VgCtgTt77B.1.1.370.00135
S706A706VgCtgTt66AY.1000.000276
S706A706PGctCct66AY.40.000009
S706A706SGctTct66AY.4.20.00013
S706A706VgCtgTt66AY.420.000241
S706A706AgcTgcC66AY.430.000027
S706A706SGctTct66B.1.5260.000141
S706A706SGctTct55AE.80.002445
S706A706SGctTct55AY.1190.000177
S706A706SGctTct55AY.270.000324
S706A706AgcTgcC45AY.440.000024
S706A706AgcTgcG15AY.440.000006
S706A706VgCtgTt55AY.46.30.004669
S706A706VgCtgTt55AY.470.000156
S706A706VgCtgTt35AY.9.20.00011
S706A706VgCTgTG15AY.9.20.000037
S706A706VgCTgTA15AY.9.20.000037
S706A706SGctTct35B.1.5960.000261
S706A706SGcTTcG15B.1.5960.000087
S706A706SGcTTcC15B.1.5960.000087
S706A706VgCtgTt55Q.10.000632
S706A706DgCtgAt44All0.000001
S706A706FGCtTTt34All0.000001
S706A706FGCTTTC14All0
S706A706SGctTct44AY.1200.000149
S706A706VgCtgTt44AY.390.000099
S706A706delGCT---44AY.430.000018
S706A706VgCtgTt44AY.60.000165
S706A706delGCT---44B.10.000037
S706A706AgcTgcC34B.10.000027
S706A706AgcTgcG14B.10.000009
S706A706SGctTct44B.1.1770.000053
S706A706PGctCct44B.1.177.520.00703
S706A706SGctTct44B.1.20.000035
S706A706AgcTgcG44B.1.36.10.004561
S706A706VgCtgTt44B.1.5950.001044
S706A706VgCtgTt44D.20.0003
S706A706del2GCT--N13All0
S706A706del2GCT--G13All0
S706A706del2gCTg--13All0
S706A706VgCtgTt33AY.1020.00008
S706A706AgcTgcC33AY.1090.002219
S706A706delGCT---33AY.250.000018
S706A706AgcTgcC33AY.250.000018
S706A706PGctCct33AY.300.001187
S706A706AgcTgcC33AY.390.000074
S706A706AgcTgcC33AY.39.20.004622
S706A706VgCtgTt33AY.450.000365
S706A706VgCtgTt33AY.460.000312
S706A706VgCtgTt33AY.540.000286
S706A706VgCtgTt33AY.750.000168
S706A706PGctCct33B.1.1770.00004
S706A706VgCtgTt33B.1.177.160.001993
S706A706VgCtgTt33B.1.177.370.081081
S706A706SGctTct33B.1.177.50.003727
S706A706SGctTct33B.1.177.60.00293
S706A706VgCtgTt33B.1.177.600.000655
S706A706SGctTct33B.1.3620.004622
S706A706VgCtgTt33B.1.5500.041096
S706A706VgCtgTt33B.1.5750.00091
S706A706TGcTAcC13B.1.5960.000087
S706A706TGcTAcG13B.1.5960.000087
S706A706TGctAct13B.1.5960.000087
S706A706delGCT---33B.1.617.20.000011
S706A706delGCT---33P.10.000047
S706A706AgcTgcC33P.10.000047
S706A706AgcTgcC33P.1.140.000143
S706A706delGCT---220.111111
S706A706PGctCct22AY.1100.000225
S706A706VgCtgTt22AY.1130.000285
S706A706SGctTct22AY.1160.000574
S706A706VgCtgTt22AY.1180.000125
S706A706SGctTct22AY.1210.000271
S706A706VgCtgTt22AY.160.000759
S706A706VgCtgTt22AY.230.000139
S706A706VgCtgTt22AY.360.000296
S706A706SGctTct22AY.39.10.000079
S706A706GgCtgGt22AY.4.50.000215
S706A706PGctCct22AY.430.000009
S706A706TGctAct22AY.440.000012
S706A706VgCtgTt22AY.46.60.000144
S706A706SGctTct22AY.470.000062
S706A706SGctTct22AY.50.000041
S706A706VgCtgTt22AY.610.00021
S706A706PGctCct22AY.620.000871
S706A706VgCtgTt22AY.730.001331
S706A706AgcTgcC22AY.90.000135
S706A706GgCTgGG12AY.9.20.000037
S706A706GgCTgGA12AY.9.20.000037
S706A706VgCtgTt22B0.000256
S706A706del2GCT--G12B.10.000009
S706A706del2GCT--N12B.10.000009
S706A706FGCtTTt12B.1.10.000018
S706A706FGCTTTC12B.1.10.000018
S706A706VgCtgTt22B.1.1.1380.012121
S706A706VgCtgTt22B.1.1.1980.002937
S706A706VgCtgTt22B.1.1.2190.01
S706A706VgCtgTt22B.1.1.2220.000408
S706A706SGctTct22B.1.1.40.005952
S706A706SGctTct22B.1.1.5190.000079
S706A706delGCT---22B.1.1.70.000002
S706A706GgCtgGt22B.1.1.70.000002
S706A706VgCtgTt22B.1.177.120.000303
S706A706VgCtgTt22B.1.177.150.001262
S706A706VgCtgTt22B.1.177.810.000379
S706A706VgCtgTt22B.1.2400.000431
S706A706SGctTct22B.1.2400.000431
S706A706VgCtgTt22B.1.360.000292
S706A706VgCtgTt22B.1.36.380.003284
S706A706SGctTct22B.1.36.80.002
S706A706AgcTgcG22B.1.4010.016393
S706A706VgCtgTt22B.1.4270.000101
S706A706VgCtgTt22B.1.5170.000854
S706A706PGctCct22B.1.5250.000226
S706A706VgCtgTt22B.1.6090.000959
S706A706VgCtgTt22B.1.617.10.000258
S706A706PGctCct22B.1.617.20.000008
S706A706GgCtgGt22B.1.617.20.000008
S706A706AgcTgcC22B.1.6180.008065
S706A706delGCT---22B.1.6210.000177
S706A706VgCtgTt22B.1.6370.000146
S706A706VgCtgTt22C.370.000232
S706A706AgcTgcG22C.370.000232
S706A706SGctTct22P.1.140.000096
S706A706VgCtgTt22P.1.150.000465
S706A706delGCT---22P.1.150.000465
S706A706PGctCct22P.30.00319
S706A706VgCtgTt22W.40.002703
S706A706TGctAct110.055556
S706A706DgCtgAt110.055556
S706A706VgCtgTt11AD.20.000219
S706A706SGctTct11AD.20.000219
S706A706VgCtgTt11AH.20.012048
S706A706del1gCtg-t11All0
S706A706MGCTATG11All0
S706A706LGCTTTG11All0
S706A706AgcTgcC11AM.40.003571
S706A706VgCtgTt11AY.10.000396
S706A706SGctTct11AY.1000.000046
S706A706delGCT---11AY.1000.000046
S706A706TGctAct11AY.1030.000006
S706A706delGCT---11AY.1030.000006
S706A706GgCtgGt11AY.1030.000006
S706A706SGctTct11AY.1110.000183
S706A706VgCtgTt11AY.1110.000183
S706A706SGctTct11AY.1140.000231
S706A706DgCtgAt11AY.1140.000231
S706A706AgcTgcC11AY.116.10.000311
S706A706VgCtgTt11AY.1170.000085
S706A706SGctTct11AY.1170.000085
S706A706AgcTgcC11AY.1190.000035
S706A706FGCtTTt11AY.1190.000035
S706A706VgCtgTt11AY.120.000316
S706A706VgCtgTt11AY.120.10.000321
S706A706SGctTct11AY.20.000356
S706A706SGctTct11AY.230.00007
S706A706PGctCct11AY.250.000006
S706A706VgCtgTt11AY.260.000028
S706A706AgcTgcC11AY.260.000028
S706A706AgcTgcC11AY.290.000016
S706A706PGctCct11AY.30.00001
S706A706SGctTct11AY.30.00001
S706A706delGCT---11AY.30.00001
S706A706VgCtgTt11AY.320.000532
S706A706SGctTct11AY.340.000097
S706A706VgCtgTt11AY.340.000097
S706A706VgCtgTt11AY.34.10.00051
S706A706VgCtgTt11AY.39.10.00004
S706A706AgcTgcC11AY.39.10.00004
S706A706GgCtgGt11AY.40.000002
S706A706FGCtTTt11AY.40.000002
S706A706VgCtgTt11AY.4.2.10.000149
S706A706VgCtgTt11AY.4.40.000409
S706A706AgcTgcC11AY.410.000294
S706A706AgcTgcG11AY.420.00004
S706A706TGctAct11AY.430.000004
S706A706delGCT---11AY.440.000006
S706A706SGctTct11AY.450.000122
S706A706PGctCct11AY.460.000104
S706A706AgcTgcC11AY.460.000104
S706A706VgCtgTt11AY.46.20.000635
S706A706VgCtgTt11AY.46.40.000165
S706A706SGctTct11AY.46.50.000198
S706A706PGctCct11AY.46.60.000072
S706A706AgcTgcC11AY.470.000031
S706A706SGctTct11AY.480.000465
S706A706PGctCct11AY.50.000021
S706A706AgcTgcC11AY.50.000021
S706A706SGctTct11AY.5.40.000277
S706A706VgCtgTt11AY.510.000909
S706A706PGctCct11AY.510.000909
S706A706SGctTct11AY.540.000095
S706A706VgCtgTt11AY.550.000917
S706A706AgcTgcC11AY.570.000656
S706A706AgcTgcC11AY.60.000041
S706A706SGctTct11AY.60.000041
S706A706VgCtgTt11AY.600.000938
S706A706AgcTgcC11AY.620.000436
S706A706VgCtgTt11AY.650.000533
S706A706del2gCTg--11AY.670.000464
S706A706PGctCct11AY.710.000475
S706A706SGctTct11AY.750.000056
S706A706PGctCct11AY.750.000056
S706A706VgCtgTt11AY.75.10.00018
S706A706SGctTct11AY.75.10.00018
S706A706PGctCct11AY.790.001211
S706A706VgCtgTt11AY.9.10.000084
S706A706SGctTct11AY.9.10.000084
S706A706SGctTct11AY.9.20.000037
S706A706DgCtgAt11AY.9.20.000037
S706A706VgCtgTt11AY.920.000287
S706A706VgCtgTt11AY.970.001701
S706A706VgCtgTt11AY.980.000079
S706A706SGctTct11AY.980.000079
S706A706VgCtgTt11AY.98.10.000048
S706A706VgCtgTt11AY.990.001049
S706A706VgCtgTt11AY.99.20.000092
S706A706SGctTct11AY.99.20.000092
S706A706AgcTgcC11AY.99.20.000092
S706A706VgCtgTt11AZ.20.000821
S706A706SGctTct11B0.000128
S706A706PGctCct11B.10.000009
S706A706GgCtgGt11B.10.000009
S706A706PGctCct11B.1.10.000018
S706A706TGcTAcG11B.1.10.000018
S706A706GgCtgGt11B.1.10.000018
S706A706LGCTTTG11B.1.10.000018
S706A706MGCTATG11B.1.10.000018
S706A706SGctTct11B.1.1.10.000327
S706A706VgCtgTt11B.1.1.1640.005155
S706A706VgCtgTt11B.1.1.2140.000055
S706A706VgCtgTt11B.1.1.2300.009174
S706A706VgCtgTt11B.1.1.2730.006757
S706A706VgCtgTt11B.1.1.3060.000438
S706A706VgCtgTt11B.1.1.3180.000302
S706A706SGctTct11B.1.1.3440.010753
S706A706delGCT---11B.1.1.3720.000689
S706A706TGctAct11B.1.1.4090.002833
S706A706delGCT---11B.1.1.4090.002833
S706A706VgCtgTt11B.1.1.4320.001266
S706A706AgcTgcC11B.1.1.5190.00004
S706A706AgcTgcC11B.1.1.5230.001563
S706A706VgCtgTt11B.1.1.5250.005464
S706A706TGctAct11B.1.1.70.000001
S706A706VgCtgTt11B.1.110.30.000718
S706A706PGctCct11B.1.110.30.000718
S706A706VgCtgTt11B.1.1460.004237
S706A706SGctTct11B.1.1600.000031
S706A706VgCtgTt11B.1.160.70.002079
S706A706VgCtgTt11B.1.177.180.00116
S706A706AgcTgcC11B.1.177.210.000076
S706A706SGctTct11B.1.177.210.000076
S706A706VgCtgTt11B.1.177.40.000211
S706A706SGctTct11B.1.177.620.001192
S706A706VgCtgTt11B.1.177.70.000165
S706A706SGctTct11B.1.177.830.001481
S706A706SGctTct11B.1.177.870.000728
S706A706delGCT---11B.1.20.000009
S706A706DgCtgAt11B.1.20.000009
S706A706AgcTgcC11B.1.20.000009
S706A706SGctTct11B.1.2060.000816
S706A706VgCtgTt11B.1.214.20.0006
S706A706VgCtgTt11B.1.2210.000071
S706A706PGctCct11B.1.2290.009709
S706A706VgCtgTt11B.1.2320.000537
S706A706PGctCct11B.1.2340.000132
S706A706VgCtgTt11B.1.2340.000132
S706A706VgCtgTt11B.1.2580.000067
S706A706SGctTct11B.1.2580.000067
S706A706VgCtgTt11B.1.258.220.002667
S706A706VgCtgTt11B.1.2640.012346
S706A706VgCtgTt11B.1.2980.002114
S706A706SGctTct11B.1.360.000146
S706A706VgCtgTt11B.1.36.10.00114
S706A706VgCtgTt11B.1.36.180.00042
S706A706SGctTct11B.1.36.310.001751
S706A706VgCtgTt11B.1.36.360.000602
S706A706VgCtgTt11B.1.36.90.003215
S706A706SGctTct11B.1.3690.000285
S706A706TGctAct11B.1.3960.000706
S706A706AgcTgcG11B.1.4280.00102
S706A706AgcTgcC11B.1.4290.000024
S706A706SGctTct11B.1.4290.000024
S706A706VgCtgTt11B.1.4780.011765
S706A706VgCtgTt11B.1.4990.00105
S706A706SGctTct11B.1.5250.000113
S706A706VgCtgTt11B.1.5610.000397
S706A706TGctAct11B.1.5610.000397
S706A706VgCtgTt11B.1.5680.001111
S706A706VgCtgTt11B.1.5820.000491
S706A706VgCtgTt11B.1.595.30.026316
S706A706VgCtgTt11B.1.5960.000087
S706A706del1gCtg-t11B.1.617.10.000129
S706A706delGCT---11B.1.6200.000946
S706A706delGCT---11B.1.6270.00202
S706A706SGctTct11B.1.6300.005236
S706A706PGctCct11B.1.6370.000073
S706A706SGctTct11B.1.6370.000073
S706A706delGCT---11B.1.6380.052632
S706A706VgCtgTt11B.1.88.10.004808
S706A706SGctTct11B.390.002331
S706A706VgCtgTt11B.40.002208
S706A706AgcTgcC11B.400.000364
S706A706PGctCct11B.60.00091
S706A706VgCtgTt11B.6.60.000889
S706A706VgCtgTt11C.10.002392
S706A706SGctTct11C.370.000116
S706A706delGCT---11C.370.000116
S706A706PGctCct11C.370.000116
S706A706SGctTct11P.10.000016
S706A706SGctTct11P.1.120.000484
S706A706delGCT---11P.1.130.000898
S706A706VgCtgTt11P.1.140.000048
S706A706SGctTct11P.20.000187
S706A706VgCtgTt11P.20.000187
S706A706SGctTct11Q.10.000126
S706A706AgcTgcC11Q.30.000145
S706A706SGctTct11R.10.00009