CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 701 & Codon = gTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S701A701VnonsyngCagTa76450764460.99994823663-23665

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S701A701VgCagTa7644676450All0.014621
S701A701VgCagTa3276632768B.1.3510.974019
S701A701VgCagTa2767327674B.1.5260.650441
S701A701VgCagTa52205220B.1.1.70.004673
S701A701VgCagTa32953295B.1.351.20.996974
S701A701VgCagTa16521652B.1.351.50.990408
S701A701VgCagTa11291129B.1.351.30.989483
S701A701VgCagTa710710B.1.5240.998594
S701A701VgCagTa565565B.10.005175
S701A701VgCagTa564564AY.40.000878
S701A701VgCagTa371371AY.440.002258
S701A701VgCagTa351351AY.3.10.029926
S701A701VgCagTa180181B.1.10.003265
S701A701VgCagTa171171B.1.20.001506
S701A701VgCagTa166166AY.430.000735
S701A701VgCagTa9898B.1.617.20.000369
S701A701VgCagTa9494B.1.4000.040326
S701A701VgCagTa7373AY.250.000439
S701A701VgCagTa5353AY.30.000527
S701A701VgCagTa4949B.1.1770.000645
S701A701VgCagTa4343B.1.1700.185345
S701A701VgCagTa4242B.1.4870.823529
S701A701VgCagTa4040B.1.5580.182648
S701A701VgCagTa3939B.1.1600.001216
S701A701VgCagTa3939B.1.4290.000918
S701A701VgCagTa3838AY.4.20.000824
S701A701VgCagTa3333P.10.00052
S701A701VgCagTa3030B.60.027298
S701A701VgCagTa2929B.1.1.2800.089506
S701A701VgCagTa2929B.1.1.5190.001152
S701A701VgCagTa2828B.1.3560.048359
S701A701VgCagTa2626B.1.351.11
S701A701VgCagTa2424B.1.6230.012876
S701A701VgCagTa2121AY.200.000816
S701A701VgCagTa2121B.1.1.250.011939
S701A701VgCagTa2020B.1.2580.001331
S701A701VgCagTa1919B.1.2060.015498
S701A701VgCagTa1616AY.390.000395
S701A701VgCagTa1616B.1.177.580.021305
S701A701VgCagTa1616B.1.2370.079602
S701A701VgCagTa1616B.1.4700.022472
S701A701VgCagTa1515B.1.1.4320.018987
S701A701VgCagTa1515B.1.6210.001328
S701A701VgCagTa1414B.1.6000.081871
S701A701VgCagTa1414B.6.60.012444
S701A701VgCagTa1414C.370.001625
S701A701VgCagTa1313AY.1030.000081
S701A701VgCagTa1313B.1.1.3060.005699
S701A701VgCagTa1313B.1.177.730.007361
S701A701VgCagTa1313P.1.70.004151
S701A701VgCagTa1111B.1.1.5070.095652
S701A701VgCagTa1010B.1.2210.00071
S701A701VgCagTa1010B.1.5540.044053
S701A701VgCagTa1010P.1.140.000478
S701A701VgCagTa99AY.1000.000414
S701A701VgCagTa99AY.1020.000239
S701A701VgCagTa99AY.1130.001282
S701A701VgCagTa99AY.1210.001218
S701A701VgCagTa99AY.290.000142
S701A701VgCagTa99B0.00115
S701A701VgCagTa99B.1.360.001313
S701A701VgCagTa99B.1.4390.053254
S701A701VgCagTa99B.1.5610.003573
S701A701VgCagTa88B.1.2430.000557
S701A701VgCagTa88B.1.3810.0625
S701A701VgCagTa88B.1.5960.000697
S701A701VgCagTa77AY.50.000145
S701A701VgCagTa77B.1.1.1890.01059
S701A701VgCagTa77B.1.6200.006623
S701A701VgCagTa66AY.260.00017
S701A701VgCagTa66B.1.1.1700.007481
S701A701VgCagTa66B.1.2700.033708
S701A701VgCagTa66B.1.5950.001566
S701A701VgCagTa66Q.10.000758
S701A701VgCagTa66Q.30.00087
S701A701VgCagTa55AY.1160.001434
S701A701VgCagTa55AY.340.000485
S701A701VgCagTa55AY.420.000201
S701A701VgCagTa55AY.840.002187
S701A701VgCagTa55AY.99.20.000461
S701A701VgCagTa55B.1.1.2140.000277
S701A701VgCagTa55B.1.1.4090.014164
S701A701VgCagTa55B.1.177.100.00439
S701A701VgCagTa55B.1.4230.05102
S701A701VgCagTa55B.1.5250.000566
S701A701VgCagTa55N.50.008834
S701A701VgCagTa44AY.1200.000149
S701A701VgCagTa44AY.350.000932
S701A701VgCagTa44AY.460.000416
S701A701VgCagTa44AY.46.40.000658
S701A701VgCagTa44B.1.1.1390.090909
S701A701VgCagTa44B.1.1.1590.018692
S701A701VgCagTa44B.1.1.2200.007435
S701A701VgCagTa44B.1.1.4340.001394
S701A701VgCagTa44B.1.1.440.009639
S701A701VgCagTa44B.1.1.500.002716
S701A701VgCagTa44B.1.36.290.002069
S701A701VgCagTa44B.1.4270.000202
S701A701VgCagTa44B.1.6280.001409
S701A701VgCagTa44P.1.160.001496
S701A701VgCagTa33A0.001161
S701A701VgCagTa33A.20.001985
S701A701VgCagTa33AY.1060.001005
S701A701VgCagTa33AY.110.004016
S701A701VgCagTa33AY.1190.000106
S701A701VgCagTa33AY.270.000194
S701A701VgCagTa33AY.740.000347
S701A701VgCagTa33AY.9.20.00011
S701A701VgCagTa33AY.900.002053
S701A701VgCagTa33AY.980.000237
S701A701VgCagTa33B.1.1.3450.130435
S701A701VgCagTa33B.1.1.3890.018182
S701A701VgCagTa33B.1.1570.008955
S701A701VgCagTa33B.1.177.40.000633
S701A701VgCagTa33B.1.2340.000396
S701A701VgCagTa33B.1.2600.010033
S701A701VgCagTa33B.1.36.180.001261
S701A701VgCagTa33B.1.3670.002377
S701A701VgCagTa33B.1.4090.002344
S701A701VgCagTa33B.1.5300.021429
S701A701VgCagTa33B.1.5670.01
S701A701VgCagTa33B.1.6090.001438
S701A701VgCagTa33B.1.6370.000219
S701A701VgCagTa33P.1.150.000697
S701A701VgCagTa33P.20.00056
S701A701VgCagTa33P.30.004785
S701A701VgCagTa22A.2.50.000998
S701A701VgCagTa22A.23.10.001408
S701A701VgCagTa22AY.10.000791
S701A701VgCagTa22AY.1070.000932
S701A701VgCagTa22AY.1080.002205
S701A701VgCagTa22AY.1140.000462
S701A701VgCagTa22AY.1170.000169
S701A701VgCagTa22AY.1180.000125
S701A701VgCagTa22AY.360.000296
S701A701VgCagTa22AY.450.000243
S701A701VgCagTa22AY.470.000062
S701A701VgCagTa22AY.60.000082
S701A701VgCagTa22AY.75.10.000361
S701A701VgCagTa22B.1.1.10.000653
S701A701VgCagTa22B.1.1.1610.007067
S701A701VgCagTa22B.1.1.2770.001517
S701A701VgCagTa22B.1.1.280.000622
S701A701VgCagTa22B.1.1.2840.000215
S701A701VgCagTa22B.1.1.3170.000823
S701A701VgCagTa22B.1.1.3180.000604
S701A701VgCagTa22B.1.1.330.000842
S701A701VgCagTa22B.1.177.150.001262
S701A701VgCagTa22B.1.177.70.00033
S701A701VgCagTa22B.1.177.860.000367
S701A701VgCagTa22B.1.2190.018868
S701A701VgCagTa22B.1.2400.000431
S701A701VgCagTa22B.1.2650.002541
S701A701VgCagTa22B.1.36.160.002849
S701A701VgCagTa22B.1.3750.001639
S701A701VgCagTa22B.1.5270.007407
S701A701VgCagTa22B.1.5750.000607
S701A701VgCagTa22B.1.6020.013072
S701A701VgCagTa22B.1.6250.004706
S701A701VgCagTa22B.1.6270.00404
S701A701VgCagTa22B.1.6340.006849
S701A701VgCagTa22B.550.0059
S701A701VgCagTa22C.10.004785
S701A701VgCagTa22C.160.002121
S701A701VgCagTa22D.20.00015
S701A701VgCagTa22P.1.10.000635
S701A701VgCagTa22P.1.170.000324
S701A701VgCagTa22P.1.20.002312
S701A701VgCagTa22Q.80.00033
S701A701VgCagTa22R.10.00018
S701A701VgCagTa11A.2.5.20.001572
S701A701VgCagTa11A.30.002096
S701A701VgCagTa11AY.100.00053
S701A701VgCagTa11AY.120.20.001285
S701A701VgCagTa11AY.130.000161
S701A701VgCagTa11AY.140.000088
S701A701VgCagTa11AY.16.10.00047
S701A701VgCagTa11AY.220.002092
S701A701VgCagTa11AY.300.000396
S701A701VgCagTa11AY.320.000532
S701A701VgCagTa11AY.330.000067
S701A701VgCagTa11AY.380.000499
S701A701VgCagTa11AY.4.30.000842
S701A701VgCagTa11AY.46.60.000072
S701A701VgCagTa11AY.5.30.000337
S701A701VgCagTa11AY.530.000288
S701A701VgCagTa11AY.610.000105
S701A701VgCagTa11AY.620.000436
S701A701VgCagTa11AY.750.000056
S701A701VgCagTa11AY.90.000068
S701A701VgCagTa11AY.9.10.000084
S701A701VgCagTa11AY.91.10.004065
S701A701VgCagTa11AY.920.000287
S701A701VgCagTa11AY.98.10.000048
S701A701VgCagTa11AZ.10.000867
S701A701VgCagTa11B.1.1.1370.0125
S701A701VgCagTa11B.1.1.1410.002012
S701A701VgCagTa11B.1.1.2220.000204
S701A701VgCagTa11B.1.1.2430.004082
S701A701VgCagTa11B.1.1.2690.001353
S701A701VgCagTa11B.1.1.2790.001121
S701A701VgCagTa11B.1.1.340.013158
S701A701VgCagTa11B.1.1.3490.010309
S701A701VgCagTa11B.1.1.3720.000689
S701A701VgCagTa11B.1.1.3740.002375
S701A701VgCagTa11B.1.1.3750.011905
S701A701VgCagTa11B.1.1.4160.000905
S701A701VgCagTa11B.1.1.4290.004608
S701A701VgCagTa11B.1.1.480.002874
S701A701VgCagTa11B.1.1.4860.001577
S701A701VgCagTa11B.1.1.5280.004808
S701A701VgCagTa11B.1.110.30.000718
S701A701VgCagTa11B.1.1260.001276
S701A701VgCagTa11B.1.1390.000733
S701A701VgCagTa11B.1.160.320.004292
S701A701VgCagTa11B.1.160.80.001289
S701A701VgCagTa11B.1.177.210.000076
S701A701VgCagTa11B.1.177.420.000894
S701A701VgCagTa11B.1.177.810.000189
S701A701VgCagTa11B.1.2180.005155
S701A701VgCagTa11B.1.221.30.000833
S701A701VgCagTa11B.1.2410.000812
S701A701VgCagTa11B.1.2420.018868
S701A701VgCagTa11B.1.258.170.000104
S701A701VgCagTa11B.1.2760.016949
S701A701VgCagTa11B.1.2790.000514
S701A701VgCagTa11B.1.2840.013158
S701A701VgCagTa11B.1.3110.000275
S701A701VgCagTa11B.1.36.100.004785
S701A701VgCagTa11B.1.36.170.000494
S701A701VgCagTa11B.1.36.350.002604
S701A701VgCagTa11B.1.36.80.001
S701A701VgCagTa11B.1.3620.001541
S701A701VgCagTa11B.1.3690.000285
S701A701VgCagTa11B.1.3960.000706
S701A701VgCagTa11B.1.3970.004854
S701A701VgCagTa11B.1.3990.001934
S701A701VgCagTa11B.1.438.10.000107
S701A701VgCagTa11B.1.4970.000315
S701A701VgCagTa11B.1.5330.009615
S701A701VgCagTa11B.1.5640.000426
S701A701VgCagTa11B.1.5800.004065
S701A701VgCagTa11B.1.6010.030303
S701A701VgCagTa11B.1.6180.004032
S701A701VgCagTa11B.1.6360.006711
S701A701VgCagTa11P.1.130.000898
S701A701VgCagTa11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.