CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 701

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S701A701VnonsyngCagTa76450764460.99994823663-23665
S701A701VnonsyngCAgTG7645030.000039241323663-23665
S701A701VnonsyngCAgTT7645010.000013080423663-23665
S701A701SnonsynGcaTca179517940.99944323663-23665
S701A701SnonsynGcATcC179510.00055710323663-23665
S701A701AsyngcAgcT2851600.56140423663-23665
S701A701AsyngcAgcG2851070.37543923663-23665
S701A701AsyngcAgcC285180.063157923663-23665
S701A701TnonsynGcaAca2112100.99526123663-23665
S701A701TnonsynGcAAcG21110.0047393423663-23665
S701A701PnonsynGcaCca60570.9523663-23665
S701A701PnonsynGcACcG6020.033333323663-23665
S701A701PnonsynGcACcC6010.016666723663-23665
S701A701deldelGCA---4444123663-23665
S701A701GnonsyngCagGa38340.89473723663-23665
S701A701GnonsyngCAgGC3820.052631623663-23665
S701A701GnonsyngCAgGG3810.026315823663-23665
S701A701GnonsyngCAgGT3810.026315823663-23665
S701A701EnonsyngCagAa26240.92307723663-23665
S701A701EnonsyngCAgAG2620.076923123663-23665
S701A701del1delgcAgc-1050.523663-23665
S701A701del1delgCAgT-1020.223663-23665
S701A701del1delgCag-a1010.123663-23665
S701A701del1delGca-ca1010.123663-23665
S701A701del1delGcAAc-1010.123663-23665
S701A701InonsynGCaATa870.87523663-23665
S701A701InonsynGCAATT810.12523663-23665
S701A701LnonsynGCaTTa750.71428623663-23665
S701A701LnonsynGCACTG710.14285723663-23665
S701A701LnonsynGCACTC710.14285723663-23665
S701A701KnonsynGCaAAa430.7523663-23665
S701A701KnonsynGCAAAG410.2523663-23665
S701A701QnonsynGCACAG210.523663-23665
S701A701QnonsynGCaCAa210.523663-23665
S701A701XnonsynGCaTGa11123663-23665

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S701A701VgCagTa7644676450All0.014621
S701A701VgCAgTG376450All0.000001
S701A701VgCAgTT176450All0
S701A701VgCagTa3276632768B.1.3510.974019
S701A701VgCAgTG232768B.1.3510.000059
S701A701VgCagTa2767327674B.1.5260.650441
S701A701VgCAgTG127674B.1.5260.000024
S701A701VgCagTa52205220B.1.1.70.004673
S701A701VgCagTa32953295B.1.351.20.996974
S701A701SGcaTca17941795All0.000343
S701A701SGcATcC11795All0
S701A701VgCagTa16521652B.1.351.50.990408
S701A701VgCagTa11291129B.1.351.30.989483
S701A701VgCagTa710710B.1.5240.998594
S701A701SGcaTca663663B.1.1.70.000594
S701A701VgCagTa565565B.10.005175
S701A701VgCagTa564564AY.40.000878
S701A701SGcaTca465465AY.280.879017
S701A701VgCagTa371371AY.440.002258
S701A701VgCagTa351351AY.3.10.029926
S701A701AgcAgcT160285All0.000031
S701A701AgcAgcG107285All0.00002
S701A701AgcAgcC18285All0.000003
S701A701TGcaAca210211All0.00004
S701A701TGcAAcG1211All0
S701A701VgCagTa180181B.1.10.003265
S701A701VgCAgTT1181B.1.10.000018
S701A701VgCagTa171171B.1.20.001506
S701A701VgCagTa166166AY.430.000735
S701A701SGcaTca125125B.1.617.20.000471
S701A701VgCagTa9898B.1.617.20.000369
S701A701VgCagTa9494B.1.4000.040326
S701A701TGcaAca7878B.1.1.70.00007
S701A701AgcAgcT6577AY.40.000101
S701A701AgcAgcG1177AY.40.000017
S701A701AgcAgcC177AY.40.000002
S701A701VgCagTa7373AY.250.000439
S701A701PGcaCca5760All0.000011
S701A701PGcACcG260All0
S701A701PGcACcC160All0
S701A701VgCagTa5353AY.30.000527
S701A701PGcaCca4949AY.40.000076
S701A701VgCagTa4949B.1.1770.000645
S701A701SGcaTca4545AY.430.000199
S701A701delGCA---4444All0.000008
S701A701VgCagTa4343B.1.1700.185345
S701A701VgCagTa4242B.1.4870.823529
S701A701SGcaTca4242D.20.003152
S701A701AgcAgcT2340B.1.1.70.000021
S701A701AgcAgcG1740B.1.1.70.000015
S701A701VgCagTa4040B.1.5580.182648
S701A701VgCagTa3939B.1.1600.001216
S701A701VgCagTa3939B.1.4290.000918
S701A701GgCagGa3438All0.000007
S701A701GgCAgGC238All0
S701A701GgCAgGT138All0
S701A701GgCAgGG138All0
S701A701VgCagTa3838AY.4.20.000824
S701A701AgcAgcG2437B.1.617.20.00009
S701A701AgcAgcT1037B.1.617.20.000038
S701A701AgcAgcC337B.1.617.20.000011
S701A701VgCagTa3333P.10.00052
S701A701VgCagTa3030B.60.027298
S701A701VgCagTa2929B.1.1.2800.089506
S701A701VgCagTa2929B.1.1.5190.001152
S701A701SGcaTca2828AY.40.000044
S701A701VgCagTa2828B.1.3560.048359
S701A701EgCagAa2426All0.000005
S701A701EgCAgAG226All0
S701A701SGcaTca2626AY.9.10.002177
S701A701VgCagTa2626B.1.351.11
S701A701VgCagTa2424B.1.6230.012876
S701A701SGcaTca2323AY.500.018385
S701A701TGcaAca2222B.1.5960.001917
S701A701VgCagTa2121AY.200.000816
S701A701VgCagTa2121B.1.1.250.011939
S701A701GgCagGa2020B.1.1.70.000018
S701A701VgCagTa2020B.1.2580.001331
S701A701SGcaTca2020B.1.4290.000471
S701A701VgCagTa1919B.1.2060.015498
S701A701SGcaTca1818AY.800.020316
S701A701VgCagTa1616AY.390.000395
S701A701SGcaTca1616AY.440.000097
S701A701AgcAgcT1016AY.440.000061
S701A701AgcAgcG616AY.440.000037
S701A701VgCagTa1616B.1.177.580.021305
S701A701VgCagTa1616B.1.2370.079602
S701A701VgCagTa1616B.1.4700.022472
S701A701SGcaTca1515AY.46.50.002976
S701A701SGcaTca1515AY.46.60.001083
S701A701VgCagTa1515B.1.1.4320.018987
S701A701VgCagTa1515B.1.6210.001328
S701A701SGcaTca1414AY.250.000084
S701A701VgCagTa1414B.1.6000.081871
S701A701VgCagTa1414B.6.60.012444
S701A701VgCagTa1414C.370.001625
S701A701SGcaTca1414P.10.000221
S701A701SGcaTca1313AY.1020.000345
S701A701VgCagTa1313AY.1030.000081
S701A701SGcaTca1313AY.980.001027
S701A701SGcaTca1313B.1.10.000236
S701A701VgCagTa1313B.1.1.3060.005699
S701A701VgCagTa1313B.1.177.730.007361
S701A701VgCagTa1313P.1.70.004151
S701A701TGcaAca1111AY.40.000017
S701A701VgCagTa1111B.1.1.5070.095652
S701A701del1gcAgc-510All0.000001
S701A701del1gCAgT-210All0
S701A701del1GcAAc-110All0
S701A701del1Gca-ca110All0
S701A701del1gCag-a110All0
S701A701SGcaTca1010AY.1030.000062
S701A701VgCagTa1010B.1.2210.00071
S701A701VgCagTa1010B.1.5540.044053
S701A701VgCagTa1010P.1.140.000478
S701A701VgCagTa99AY.1000.000414
S701A701VgCagTa99AY.1020.000239
S701A701VgCagTa99AY.1130.001282
S701A701VgCagTa99AY.1210.001218
S701A701VgCagTa99AY.290.000142
S701A701SGcaTca99AY.290.000142
S701A701SGcaTca99AY.75.10.001623
S701A701VgCagTa99B0.00115
S701A701VgCagTa99B.1.360.001313
S701A701TGcaAca99B.1.36.80.009
S701A701VgCagTa99B.1.4390.053254
S701A701VgCagTa99B.1.5610.003573
S701A701IGCaATa78All0.000001
S701A701IGCAATT18All0
S701A701AgcAgcG88AY.1000.000368
S701A701AgcAgcG88AY.250.000048
S701A701SGcaTca88AY.390.000198
S701A701TGcaAca88AY.430.000035
S701A701SGcaTca88B.1.177.70.001319
S701A701VgCagTa88B.1.2430.000557
S701A701VgCagTa88B.1.3810.0625
S701A701VgCagTa88B.1.5960.000697
S701A701LGCaTTa57All0.000001
S701A701LGCACTG17All0
S701A701LGCACTC17All0
S701A701SGcaTca77AY.1000.000322
S701A701AgcAgcT77AY.1170.000592
S701A701delGCA---77AY.250.000042
S701A701SGcaTca77AY.30.00007
S701A701GgCagGa77AY.440.000043
S701A701VgCagTa77AY.50.000145
S701A701SGcaTca77AY.5.40.001937
S701A701VgCagTa77B.1.1.1890.01059
S701A701TGcaAca77B.1.1770.000092
S701A701AgcAgcT77B.1.214.20.004197
S701A701SGcaTca77B.1.3670.005547
S701A701VgCagTa77B.1.6200.006623
S701A701VgCagTa66AY.260.00017
S701A701TGcaAca66AY.330.000401
S701A701EgCagAa66AY.430.000027
S701A701SGcaTca66B.10.000055
S701A701delGCA---66B.10.000055
S701A701VgCagTa66B.1.1.1700.007481
S701A701TGcaAca66B.1.1840.352941
S701A701VgCagTa66B.1.2700.033708
S701A701VgCagTa66B.1.5950.001566
S701A701VgCagTa66Q.10.000758
S701A701VgCagTa66Q.30.00087
S701A701AgcAgcT35AY.1030.000019
S701A701AgcAgcG15AY.1030.000006
S701A701AgcAgcC15AY.1030.000006
S701A701VgCagTa55AY.1160.001434
S701A701SGcaTca55AY.1190.000177
S701A701SGcaTca55AY.330.000334
S701A701VgCagTa55AY.340.000485
S701A701SGcaTca55AY.4.50.000537
S701A701VgCagTa55AY.420.000201
S701A701AgcAgcG35AY.430.000013
S701A701AgcAgcT25AY.430.000009
S701A701SGcaTca55AY.710.002375
S701A701VgCagTa55AY.840.002187
S701A701VgCagTa55AY.99.20.000461
S701A701VgCagTa55B.1.1.2140.000277
S701A701VgCagTa55B.1.1.4090.014164
S701A701SGcaTca55B.1.1770.000066
S701A701VgCagTa55B.1.177.100.00439
S701A701SGcaTca55B.1.20.000044
S701A701IGCaATa55B.1.3510.000149
S701A701LGCaTTa55B.1.3510.000149
S701A701VgCagTa55B.1.4230.05102
S701A701VgCagTa55B.1.5250.000566
S701A701AgcAgcC25D.20.00015
S701A701AgcAgcT25D.20.00015
S701A701AgcAgcG15D.20.000075
S701A701VgCagTa55N.50.008834
S701A701SGcaTca55P.1.10.001588
S701A701AgcAgcC340.166667
S701A701GgCAgGC240.111111
S701A701GgCagGa240.111111
S701A701AgcAgcG140.055556
S701A701KGCaAAa34All0.000001
S701A701KGCAAAG14All0
S701A701TGcaAca44AY.1030.000025
S701A701VgCagTa44AY.1200.000149
S701A701SGcaTca44AY.1210.000541
S701A701AgcAgcG44AY.200.000155
S701A701VgCagTa44AY.350.000932
S701A701VgCagTa44AY.460.000416
S701A701VgCagTa44AY.46.40.000658
S701A701SGcaTca44AY.690.000747
S701A701VgCagTa44B.1.1.1390.090909
S701A701VgCagTa44B.1.1.1590.018692
S701A701VgCagTa44B.1.1.2200.007435
S701A701SGcaTca44B.1.1.3110.001433
S701A701VgCagTa44B.1.1.4340.001394
S701A701VgCagTa44B.1.1.440.009639
S701A701VgCagTa44B.1.1.500.002716
S701A701VgCagTa44B.1.36.290.002069
S701A701SGcaTca44B.1.4060.024242
S701A701VgCagTa44B.1.4270.000202
S701A701EgCagAa44B.1.5260.000094
S701A701TGcaAca44B.1.617.20.000015
S701A701VgCagTa44B.1.6280.001409
S701A701TGcaAca44C.36.30.002269
S701A701AgcAgcT44P.1.150.000929
S701A701VgCagTa44P.1.160.001496
S701A701SGcaTca230.111111
S701A701SGcATcC130.055556
S701A701VgCagTa33A0.001161
S701A701VgCagTa33A.20.001985
S701A701VgCagTa33AY.1060.001005
S701A701VgCagTa33AY.110.004016
S701A701VgCagTa33AY.1190.000106
S701A701AgcAgcG33AY.260.000085
S701A701VgCagTa33AY.270.000194
S701A701EgCagAa33AY.30.00003
S701A701TGcaAca33AY.420.000121
S701A701AgcAgcG23AY.420.00008
S701A701AgcAgcT13AY.420.00004
S701A701delGCA---33AY.430.000013
S701A701TGcaAca33AY.450.000365
S701A701AgcAgcT33AY.470.000093
S701A701SGcaTca33AY.470.000093
S701A701SGcaTca33AY.610.000314
S701A701VgCagTa33AY.740.000347
S701A701SGcaTca33AY.90.000203
S701A701VgCagTa33AY.9.20.00011
S701A701VgCagTa33AY.900.002053
S701A701VgCagTa33AY.980.000237
S701A701TGcaAca33B.10.000027
S701A701AgcAgcC23B.10.000018
S701A701AgcAgcT13B.10.000009
S701A701VgCagTa33B.1.1.3450.130435
S701A701VgCagTa33B.1.1.3890.018182
S701A701delGCA---33B.1.1.70.000003
S701A701PGcaCca33B.1.1.70.000003
S701A701VgCagTa33B.1.1570.008955
S701A701VgCagTa33B.1.177.40.000633
S701A701TGcaAca33B.1.20.000026
S701A701AgcAgcC23B.1.20.000018
S701A701AgcAgcG13B.1.20.000009
S701A701VgCagTa33B.1.2340.000396
S701A701SGcaTca33B.1.2340.000396
S701A701VgCagTa33B.1.2600.010033
S701A701VgCagTa33B.1.36.180.001261
S701A701VgCagTa33B.1.3670.002377
S701A701VgCagTa33B.1.4090.002344
S701A701VgCagTa33B.1.5300.021429
S701A701VgCagTa33B.1.5670.01
S701A701VgCagTa33B.1.6090.001438
S701A701PGcaCca23B.1.617.20.000008
S701A701PGcACcG13B.1.617.20.000004
S701A701VgCagTa33B.1.6370.000219
S701A701SGcaTca33B.1.9.50.017045
S701A701SGcaTca33C.370.000348
S701A701AgcAgcT23C.370.000232
S701A701AgcAgcG13C.370.000116
S701A701delGCA---33P.10.000047
S701A701TGcaAca33P.10.000047
S701A701VgCagTa33P.1.150.000697
S701A701TGcaAca33P.1.150.000697
S701A701AgcAgcT33P.1.70.000958
S701A701VgCagTa33P.20.00056
S701A701VgCagTa33P.30.004785
S701A701delGCA---220.111111
S701A701EgCAgAG120.055556
S701A701TGcaAca120.055556
S701A701EgCagAa120.055556
S701A701KGCaAAa120.055556
S701A701TGcAAcG120.055556
S701A701KGCAAAG120.055556
S701A701VgCagTa22A.2.50.000998
S701A701VgCagTa22A.23.10.001408
S701A701QGCACAG12All0
S701A701QGCaCAa12All0
S701A701VgCagTa22AY.10.000791
S701A701VgCagTa22AY.1070.000932
S701A701VgCagTa22AY.1080.002205
S701A701SGcaTca22AY.1130.000285
S701A701VgCagTa22AY.1140.000462
S701A701AgcAgcT22AY.1160.000574
S701A701VgCagTa22AY.1170.000169
S701A701VgCagTa22AY.1180.000125
S701A701AgcAgcT22AY.1200.000074
S701A701SGcaTca22AY.200.000078
S701A701TGcaAca22AY.250.000012
S701A701TGcaAca22AY.290.000032
S701A701TGcaAca22AY.30.00002
S701A701VgCagTa22AY.360.000296
S701A701SGcaTca22AY.380.000999
S701A701LGCACTG12AY.430.000004
S701A701PGcACcG12AY.430.000004
S701A701LGCACTC12AY.430.000004
S701A701PGcACcC12AY.430.000004
S701A701TGcaAca22AY.440.000012
S701A701delGCA---22AY.440.000012
S701A701VgCagTa22AY.450.000243
S701A701VgCagTa22AY.470.000062
S701A701VgCagTa22AY.60.000082
S701A701SGcaTca22AY.60.000082
S701A701AgcAgcG22AY.60.000082
S701A701SGcaTca22AY.650.001066
S701A701SGcaTca22AY.680.000547
S701A701SGcaTca22AY.700.000417
S701A701SGcaTca22AY.750.000112
S701A701VgCagTa22AY.75.10.000361
S701A701SGcaTca22AY.850.000854
S701A701GgCAgGG12AY.9.20.000037
S701A701GgCAgGT12AY.9.20.000037
S701A701del1gcAgc-22B.10.000018
S701A701IGCAATT12B.1.10.000018
S701A701IGCaATa12B.1.10.000018
S701A701VgCagTa22B.1.1.10.000653
S701A701VgCagTa22B.1.1.1610.007067
S701A701SGcaTca22B.1.1.1690.036364
S701A701VgCagTa22B.1.1.2770.001517
S701A701VgCagTa22B.1.1.280.000622
S701A701VgCagTa22B.1.1.2840.000215
S701A701VgCagTa22B.1.1.3170.000823
S701A701AgcAgcT12B.1.1.3170.000412
S701A701AgcAgcG12B.1.1.3170.000412
S701A701VgCagTa22B.1.1.3180.000604
S701A701VgCagTa22B.1.1.330.000842
S701A701SGcaTca22B.1.1.500.001358
S701A701EgCagAa22B.1.1.70.000002
S701A701GgCagGa22B.1.1770.000026
S701A701VgCagTa22B.1.177.150.001262
S701A701SGcaTca22B.1.177.400.010309
S701A701VgCagTa22B.1.177.70.00033
S701A701AgcAgcG22B.1.177.860.000367
S701A701VgCagTa22B.1.177.860.000367
S701A701EgCagAa22B.1.20.000018
S701A701VgCagTa22B.1.2190.018868
S701A701VgCagTa22B.1.2400.000431
S701A701VgCagTa22B.1.2650.002541
S701A701VgCagTa22B.1.36.160.002849
S701A701TGcaAca22B.1.36.290.001035
S701A701VgCagTa22B.1.3750.001639
S701A701SGcaTca22B.1.3890.002004
S701A701EgCagAa22B.1.4290.000047
S701A701AgcAgcG22B.1.438.10.000215
S701A701AgcAgcG12B.1.4990.00105
S701A701AgcAgcT12B.1.4990.00105
S701A701VgCagTa22B.1.5270.007407
S701A701VgCagTa22B.1.5750.000607
S701A701del1GcAAc-12B.1.5960.000087
S701A701del1gcAgc-12B.1.5960.000087
S701A701VgCagTa22B.1.6020.013072
S701A701delGCA---22B.1.617.20.000008
S701A701EgCagAa12B.1.617.20.000004
S701A701QGCACAG12B.1.617.20.000004
S701A701QGCaCAa12B.1.617.20.000004
S701A701EgCAgAG12B.1.617.20.000004
S701A701TGcaAca22B.1.6210.000177
S701A701SGcaTca22B.1.6210.000177
S701A701delGCA---22B.1.6210.000177
S701A701VgCagTa22B.1.6250.004706
S701A701VgCagTa22B.1.6270.00404
S701A701VgCagTa22B.1.6340.006849
S701A701VgCagTa22B.550.0059
S701A701VgCagTa22C.10.004785
S701A701VgCagTa22C.160.002121
S701A701VgCagTa22D.20.00015
S701A701VgCagTa22P.1.10.000635
S701A701SGcaTca22P.1.140.000096
S701A701TGcaAca22P.1.140.000096
S701A701AgcAgcC22P.1.140.000096
S701A701delGCA---22P.1.150.000465
S701A701VgCagTa22P.1.170.000324
S701A701VgCagTa22P.1.20.002312
S701A701SGcaTca22P.20.000373
S701A701VgCagTa22Q.80.00033
S701A701VgCagTa22R.10.00018
S701A701SGcaTca11A.20.000662
S701A701VgCagTa11A.2.5.20.001572
S701A701VgCagTa11A.30.002096
S701A701XGCaTGa11All0
S701A701VgCagTa11AY.100.00053
S701A701delGCA---11AY.1030.000006
S701A701del1Gca-ca11AY.1030.000006
S701A701SGcaTca11AY.1040.001984
S701A701AgcAgcT11AY.1060.000335
S701A701AgcAgcT11AY.1130.000142
S701A701SGcaTca11AY.1140.000231
S701A701TGcaAca11AY.1140.000231
S701A701SGcaTca11AY.1170.000085
S701A701SGcaTca11AY.1200.000037
S701A701VgCagTa11AY.120.20.001285
S701A701AgcAgcT11AY.1210.000135
S701A701VgCagTa11AY.130.000161
S701A701SGcaTca11AY.130.000161
S701A701VgCagTa11AY.140.000088
S701A701AgcAgcG11AY.140.000088
S701A701SGcaTca11AY.160.00038
S701A701SGcaTca11AY.16.10.00047
S701A701VgCagTa11AY.16.10.00047
S701A701PGcaCca11AY.200.000039
S701A701VgCagTa11AY.220.002092
S701A701delGCA---11AY.260.000028
S701A701KGCaAAa11AY.30.00001
S701A701AgcAgcT11AY.30.00001
S701A701AgcAgcT11AY.3.10.000085
S701A701VgCagTa11AY.300.000396
S701A701VgCagTa11AY.320.000532
S701A701VgCagTa11AY.330.000067
S701A701PGcaCca11AY.330.000067
S701A701VgCagTa11AY.380.000499
S701A701del1gcAgc-11AY.380.000499
S701A701SGcaTca11AY.4.20.000022
S701A701VgCagTa11AY.4.30.000842
S701A701AgcAgcG11AY.4.50.000107
S701A701EgCagAa11AY.4.50.000107
S701A701XGCaTGa11AY.430.000004
S701A701del1gCag-a11AY.430.000004
S701A701KGCaAAa11AY.430.000004
S701A701del1gCAgT-11AY.440.000006
S701A701TGcaAca11AY.46.10.001027
S701A701VgCagTa11AY.46.60.000072
S701A701SGcaTca11AY.50.000021
S701A701AgcAgcT11AY.50.000021
S701A701VgCagTa11AY.5.30.000337
S701A701VgCagTa11AY.530.000288
S701A701AgcAgcG11AY.550.000917
S701A701SGcaTca11AY.550.000917
S701A701SGcaTca11AY.590.00053
S701A701VgCagTa11AY.610.000105
S701A701VgCagTa11AY.620.000436
S701A701AgcAgcC11AY.670.000464
S701A701SGcaTca11AY.670.000464
S701A701TGcaAca11AY.690.000187
S701A701AgcAgcG11AY.710.000475
S701A701SGcaTca11AY.740.000116
S701A701VgCagTa11AY.750.000056
S701A701EgCagAa11AY.750.000056
S701A701SGcaTca11AY.840.000437
S701A701delGCA---11AY.840.000437
S701A701AgcAgcT11AY.880.000884
S701A701VgCagTa11AY.90.000068
S701A701VgCagTa11AY.9.10.000084
S701A701SGcaTca11AY.9.2.10.001976
S701A701VgCagTa11AY.91.10.004065
S701A701TGcaAca11AY.920.000287
S701A701VgCagTa11AY.920.000287
S701A701TGcaAca11AY.980.000079
S701A701SGcaTca11AY.98.10.000048
S701A701VgCagTa11AY.98.10.000048
S701A701delGCA---11AY.990.001049
S701A701TGcaAca11AY.99.20.000092
S701A701VgCagTa11AZ.10.000867
S701A701GgCagGa11B0.000128
S701A701AgcAgcG11B.1.10.000018
S701A701SGcaTca11B.1.1.10.000327
S701A701SGcaTca11B.1.1.100.001115
S701A701VgCagTa11B.1.1.1370.0125
S701A701VgCagTa11B.1.1.1410.002012
S701A701AgcAgcT11B.1.1.1700.001247
S701A701SGcaTca11B.1.1.2040.00304
S701A701VgCagTa11B.1.1.2220.000204
S701A701SGcaTca11B.1.1.2260.005814
S701A701VgCagTa11B.1.1.2430.004082
S701A701VgCagTa11B.1.1.2690.001353
S701A701VgCagTa11B.1.1.2790.001121
S701A701AgcAgcC11B.1.1.280.000311
S701A701SGcaTca11B.1.1.280.000311
S701A701AgcAgcT11B.1.1.3060.000438
S701A701SGcaTca11B.1.1.3060.000438
S701A701VgCagTa11B.1.1.340.013158
S701A701VgCagTa11B.1.1.3490.010309
S701A701delGCA---11B.1.1.3720.000689
S701A701VgCagTa11B.1.1.3720.000689
S701A701VgCagTa11B.1.1.3740.002375
S701A701VgCagTa11B.1.1.3750.011905
S701A701VgCagTa11B.1.1.4160.000905
S701A701VgCagTa11B.1.1.4290.004608
S701A701VgCagTa11B.1.1.480.002874
S701A701VgCagTa11B.1.1.4860.001577
S701A701SGcaTca11B.1.1.5190.00004
S701A701SGcaTca11B.1.1.5210.005348
S701A701VgCagTa11B.1.1.5280.004808
S701A701TGcaAca11B.1.1.530.013699
S701A701TGcaAca11B.1.1.700.000341
S701A701SGcaTca11B.1.1.830.00271
S701A701SGcaTca11B.1.1.980.018519
S701A701VgCagTa11B.1.110.30.000718
S701A701VgCagTa11B.1.1260.001276
S701A701VgCagTa11B.1.1390.000733
S701A701TGcaAca11B.1.160.140.002119
S701A701VgCagTa11B.1.160.320.004292
S701A701VgCagTa11B.1.160.80.001289
S701A701AgcAgcG11B.1.1770.000013
S701A701SGcaTca11B.1.177.120.000152
S701A701VgCagTa11B.1.177.210.000076
S701A701VgCagTa11B.1.177.420.000894
S701A701SGcaTca11B.1.177.440.000519
S701A701SGcaTca11B.1.177.690.001484
S701A701VgCagTa11B.1.177.810.000189
S701A701TGcaAca11B.1.177.870.000728
S701A701del1gCAgT-11B.1.20.000009
S701A701delGCA---11B.1.20.000009
S701A701VgCagTa11B.1.2180.005155
S701A701VgCagTa11B.1.221.30.000833
S701A701GgCagGa11B.1.2320.000537
S701A701VgCagTa11B.1.2410.000812
S701A701VgCagTa11B.1.2420.018868
S701A701SGcaTca11B.1.2430.00007
S701A701AgcAgcG11B.1.2430.00007
S701A701SGcaTca11B.1.2580.000067
S701A701SGcaTca11B.1.258.110.000396
S701A701TGcaAca11B.1.258.170.000104
S701A701SGcaTca11B.1.258.170.000104
S701A701VgCagTa11B.1.258.170.000104
S701A701TGcaAca11B.1.2600.003344
S701A701VgCagTa11B.1.2760.016949
S701A701VgCagTa11B.1.2790.000514
S701A701VgCagTa11B.1.2840.013158
S701A701VgCagTa11B.1.3110.000275
S701A701VgCagTa11B.1.36.100.004785
S701A701TGcaAca11B.1.36.100.004785
S701A701VgCagTa11B.1.36.170.000494
S701A701AgcAgcG11B.1.36.290.000517
S701A701VgCagTa11B.1.36.350.002604
S701A701VgCagTa11B.1.36.80.001
S701A701SGcaTca11B.1.36.90.003215
S701A701VgCagTa11B.1.3620.001541
S701A701VgCagTa11B.1.3690.000285
S701A701VgCagTa11B.1.3960.000706
S701A701VgCagTa11B.1.3970.004854
S701A701VgCagTa11B.1.3990.001934
S701A701EgCagAa11B.1.4040.001302
S701A701AgcAgcT11B.1.4090.000781
S701A701del1gcAgc-11B.1.4270.00005
S701A701VgCagTa11B.1.438.10.000107
S701A701SGcaTca11B.1.4690.00361
S701A701VgCagTa11B.1.4970.000315
S701A701IGCaATa11B.1.5260.000024
S701A701VgCagTa11B.1.5330.009615
S701A701TGcaAca11B.1.5330.009615
S701A701TGcaAca11B.1.5600.00463
S701A701VgCagTa11B.1.5640.000426
S701A701VgCagTa11B.1.5800.004065
S701A701TGcaAca11B.1.5820.000491
S701A701delGCA---11B.1.5960.000087
S701A701VgCagTa11B.1.6010.030303
S701A701VgCagTa11B.1.6180.004032
S701A701delGCA---11B.1.6200.000946
S701A701SGcaTca11B.1.621.10.000506
S701A701delGCA---11B.1.6270.00202
S701A701VgCagTa11B.1.6360.006711
S701A701delGCA---11B.1.6380.052632
S701A701SGcaTca11B.60.00091
S701A701delGCA---11C.370.000116
S701A701PGcaCca11D.20.000075
S701A701SGcaTca11D.30.005917
S701A701SGcaTca11N.50.001767
S701A701GgCagGa11P.10.000016
S701A701AgcAgcT11P.10.000016
S701A701SGcaTca11P.1.100.000269
S701A701delGCA---11P.1.130.000898
S701A701VgCagTa11P.1.130.000898
S701A701SGcaTca11P.1.70.000319
S701A701TGcaAca11P.20.000187
S701A701SGcaTca11P.30.001595
S701A701TGcaAca11Q.10.000126
S701A701SGcaTca11Q.30.000145
S701A701VgCagTa11Q.70.001111
S701A701SGcaTca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.