CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 701 | A701V | nonsyn | gCa | gTa | 76450 | 76446 | 0.999948 | 23663-23665 | |
S | 701 | A701V | nonsyn | gCA | gTG | 76450 | 3 | 0.0000392413 | 23663-23665 | |
S | 701 | A701V | nonsyn | gCA | gTT | 76450 | 1 | 0.0000130804 | 23663-23665 | |
S | 701 | A701S | nonsyn | Gca | Tca | 1795 | 1794 | 0.999443 | 23663-23665 | |
S | 701 | A701S | nonsyn | GcA | TcC | 1795 | 1 | 0.000557103 | 23663-23665 | |
S | 701 | A701A | syn | gcA | gcT | 285 | 160 | 0.561404 | 23663-23665 | |
S | 701 | A701A | syn | gcA | gcG | 285 | 107 | 0.375439 | 23663-23665 | |
S | 701 | A701A | syn | gcA | gcC | 285 | 18 | 0.0631579 | 23663-23665 | |
S | 701 | A701T | nonsyn | Gca | Aca | 211 | 210 | 0.995261 | 23663-23665 | |
S | 701 | A701T | nonsyn | GcA | AcG | 211 | 1 | 0.00473934 | 23663-23665 | |
S | 701 | A701P | nonsyn | Gca | Cca | 60 | 57 | 0.95 | 23663-23665 | |
S | 701 | A701P | nonsyn | GcA | CcG | 60 | 2 | 0.0333333 | 23663-23665 | |
S | 701 | A701P | nonsyn | GcA | CcC | 60 | 1 | 0.0166667 | 23663-23665 | |
S | 701 | A701del | del | GCA | --- | 44 | 44 | 1 | 23663-23665 | |
S | 701 | A701G | nonsyn | gCa | gGa | 38 | 34 | 0.894737 | 23663-23665 | |
S | 701 | A701G | nonsyn | gCA | gGC | 38 | 2 | 0.0526316 | 23663-23665 | |
S | 701 | A701G | nonsyn | gCA | gGG | 38 | 1 | 0.0263158 | 23663-23665 | |
S | 701 | A701G | nonsyn | gCA | gGT | 38 | 1 | 0.0263158 | 23663-23665 | |
S | 701 | A701E | nonsyn | gCa | gAa | 26 | 24 | 0.923077 | 23663-23665 | |
S | 701 | A701E | nonsyn | gCA | gAG | 26 | 2 | 0.0769231 | 23663-23665 | |
S | 701 | A701del1 | del | gcA | gc- | 10 | 5 | 0.5 | 23663-23665 | |
S | 701 | A701del1 | del | gCA | gT- | 10 | 2 | 0.2 | 23663-23665 | |
S | 701 | A701del1 | del | gCa | g-a | 10 | 1 | 0.1 | 23663-23665 | |
S | 701 | A701del1 | del | Gca | -ca | 10 | 1 | 0.1 | 23663-23665 | |
S | 701 | A701del1 | del | GcA | Ac- | 10 | 1 | 0.1 | 23663-23665 | |
S | 701 | A701I | nonsyn | GCa | ATa | 8 | 7 | 0.875 | 23663-23665 | |
S | 701 | A701I | nonsyn | GCA | ATT | 8 | 1 | 0.125 | 23663-23665 | |
S | 701 | A701L | nonsyn | GCa | TTa | 7 | 5 | 0.714286 | 23663-23665 | |
S | 701 | A701L | nonsyn | GCA | CTG | 7 | 1 | 0.142857 | 23663-23665 | |
S | 701 | A701L | nonsyn | GCA | CTC | 7 | 1 | 0.142857 | 23663-23665 | |
S | 701 | A701K | nonsyn | GCa | AAa | 4 | 3 | 0.75 | 23663-23665 | |
S | 701 | A701K | nonsyn | GCA | AAG | 4 | 1 | 0.25 | 23663-23665 | |
S | 701 | A701Q | nonsyn | GCA | CAG | 2 | 1 | 0.5 | 23663-23665 | |
S | 701 | A701Q | nonsyn | GCa | CAa | 2 | 1 | 0.5 | 23663-23665 | |
S | 701 | A701X | nonsyn | GCa | TGa | 1 | 1 | 1 | 23663-23665 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 701 | A701V | gCa | gTa | 76446 | 76450 | All | 0.014621 |
S | 701 | A701V | gCA | gTG | 3 | 76450 | All | 0.000001 |
S | 701 | A701V | gCA | gTT | 1 | 76450 | All | 0 |
S | 701 | A701V | gCa | gTa | 32766 | 32768 | B.1.351 | 0.974019 |
S | 701 | A701V | gCA | gTG | 2 | 32768 | B.1.351 | 0.000059 |
S | 701 | A701V | gCa | gTa | 27673 | 27674 | B.1.526 | 0.650441 |
S | 701 | A701V | gCA | gTG | 1 | 27674 | B.1.526 | 0.000024 |
S | 701 | A701V | gCa | gTa | 5220 | 5220 | B.1.1.7 | 0.004673 |
S | 701 | A701V | gCa | gTa | 3295 | 3295 | B.1.351.2 | 0.996974 |
S | 701 | A701S | Gca | Tca | 1794 | 1795 | All | 0.000343 |
S | 701 | A701S | GcA | TcC | 1 | 1795 | All | 0 |
S | 701 | A701V | gCa | gTa | 1652 | 1652 | B.1.351.5 | 0.990408 |
S | 701 | A701V | gCa | gTa | 1129 | 1129 | B.1.351.3 | 0.989483 |
S | 701 | A701V | gCa | gTa | 710 | 710 | B.1.524 | 0.998594 |
S | 701 | A701S | Gca | Tca | 663 | 663 | B.1.1.7 | 0.000594 |
S | 701 | A701V | gCa | gTa | 565 | 565 | B.1 | 0.005175 |
S | 701 | A701V | gCa | gTa | 564 | 564 | AY.4 | 0.000878 |
S | 701 | A701S | Gca | Tca | 465 | 465 | AY.28 | 0.879017 |
S | 701 | A701V | gCa | gTa | 371 | 371 | AY.44 | 0.002258 |
S | 701 | A701V | gCa | gTa | 351 | 351 | AY.3.1 | 0.029926 |
S | 701 | A701A | gcA | gcT | 160 | 285 | All | 0.000031 |
S | 701 | A701A | gcA | gcG | 107 | 285 | All | 0.00002 |
S | 701 | A701A | gcA | gcC | 18 | 285 | All | 0.000003 |
S | 701 | A701T | Gca | Aca | 210 | 211 | All | 0.00004 |
S | 701 | A701T | GcA | AcG | 1 | 211 | All | 0 |
S | 701 | A701V | gCa | gTa | 180 | 181 | B.1.1 | 0.003265 |
S | 701 | A701V | gCA | gTT | 1 | 181 | B.1.1 | 0.000018 |
S | 701 | A701V | gCa | gTa | 171 | 171 | B.1.2 | 0.001506 |
S | 701 | A701V | gCa | gTa | 166 | 166 | AY.43 | 0.000735 |
S | 701 | A701S | Gca | Tca | 125 | 125 | B.1.617.2 | 0.000471 |
S | 701 | A701V | gCa | gTa | 98 | 98 | B.1.617.2 | 0.000369 |
S | 701 | A701V | gCa | gTa | 94 | 94 | B.1.400 | 0.040326 |
S | 701 | A701T | Gca | Aca | 78 | 78 | B.1.1.7 | 0.00007 |
S | 701 | A701A | gcA | gcT | 65 | 77 | AY.4 | 0.000101 |
S | 701 | A701A | gcA | gcG | 11 | 77 | AY.4 | 0.000017 |
S | 701 | A701A | gcA | gcC | 1 | 77 | AY.4 | 0.000002 |
S | 701 | A701V | gCa | gTa | 73 | 73 | AY.25 | 0.000439 |
S | 701 | A701P | Gca | Cca | 57 | 60 | All | 0.000011 |
S | 701 | A701P | GcA | CcG | 2 | 60 | All | 0 |
S | 701 | A701P | GcA | CcC | 1 | 60 | All | 0 |
S | 701 | A701V | gCa | gTa | 53 | 53 | AY.3 | 0.000527 |
S | 701 | A701P | Gca | Cca | 49 | 49 | AY.4 | 0.000076 |
S | 701 | A701V | gCa | gTa | 49 | 49 | B.1.177 | 0.000645 |
S | 701 | A701S | Gca | Tca | 45 | 45 | AY.43 | 0.000199 |
S | 701 | A701del | GCA | --- | 44 | 44 | All | 0.000008 |
S | 701 | A701V | gCa | gTa | 43 | 43 | B.1.170 | 0.185345 |
S | 701 | A701V | gCa | gTa | 42 | 42 | B.1.487 | 0.823529 |
S | 701 | A701S | Gca | Tca | 42 | 42 | D.2 | 0.003152 |
S | 701 | A701A | gcA | gcT | 23 | 40 | B.1.1.7 | 0.000021 |
S | 701 | A701A | gcA | gcG | 17 | 40 | B.1.1.7 | 0.000015 |
S | 701 | A701V | gCa | gTa | 40 | 40 | B.1.558 | 0.182648 |
S | 701 | A701V | gCa | gTa | 39 | 39 | B.1.160 | 0.001216 |
S | 701 | A701V | gCa | gTa | 39 | 39 | B.1.429 | 0.000918 |
S | 701 | A701G | gCa | gGa | 34 | 38 | All | 0.000007 |
S | 701 | A701G | gCA | gGC | 2 | 38 | All | 0 |
S | 701 | A701G | gCA | gGT | 1 | 38 | All | 0 |
S | 701 | A701G | gCA | gGG | 1 | 38 | All | 0 |
S | 701 | A701V | gCa | gTa | 38 | 38 | AY.4.2 | 0.000824 |
S | 701 | A701A | gcA | gcG | 24 | 37 | B.1.617.2 | 0.00009 |
S | 701 | A701A | gcA | gcT | 10 | 37 | B.1.617.2 | 0.000038 |
S | 701 | A701A | gcA | gcC | 3 | 37 | B.1.617.2 | 0.000011 |
S | 701 | A701V | gCa | gTa | 33 | 33 | P.1 | 0.00052 |
S | 701 | A701V | gCa | gTa | 30 | 30 | B.6 | 0.027298 |
S | 701 | A701V | gCa | gTa | 29 | 29 | B.1.1.280 | 0.089506 |
S | 701 | A701V | gCa | gTa | 29 | 29 | B.1.1.519 | 0.001152 |
S | 701 | A701S | Gca | Tca | 28 | 28 | AY.4 | 0.000044 |
S | 701 | A701V | gCa | gTa | 28 | 28 | B.1.356 | 0.048359 |
S | 701 | A701E | gCa | gAa | 24 | 26 | All | 0.000005 |
S | 701 | A701E | gCA | gAG | 2 | 26 | All | 0 |
S | 701 | A701S | Gca | Tca | 26 | 26 | AY.9.1 | 0.002177 |
S | 701 | A701V | gCa | gTa | 26 | 26 | B.1.351.1 | 1 |
S | 701 | A701V | gCa | gTa | 24 | 24 | B.1.623 | 0.012876 |
S | 701 | A701S | Gca | Tca | 23 | 23 | AY.50 | 0.018385 |
S | 701 | A701T | Gca | Aca | 22 | 22 | B.1.596 | 0.001917 |
S | 701 | A701V | gCa | gTa | 21 | 21 | AY.20 | 0.000816 |
S | 701 | A701V | gCa | gTa | 21 | 21 | B.1.1.25 | 0.011939 |
S | 701 | A701G | gCa | gGa | 20 | 20 | B.1.1.7 | 0.000018 |
S | 701 | A701V | gCa | gTa | 20 | 20 | B.1.258 | 0.001331 |
S | 701 | A701S | Gca | Tca | 20 | 20 | B.1.429 | 0.000471 |
S | 701 | A701V | gCa | gTa | 19 | 19 | B.1.206 | 0.015498 |
S | 701 | A701S | Gca | Tca | 18 | 18 | AY.80 | 0.020316 |
S | 701 | A701V | gCa | gTa | 16 | 16 | AY.39 | 0.000395 |
S | 701 | A701S | Gca | Tca | 16 | 16 | AY.44 | 0.000097 |
S | 701 | A701A | gcA | gcT | 10 | 16 | AY.44 | 0.000061 |
S | 701 | A701A | gcA | gcG | 6 | 16 | AY.44 | 0.000037 |
S | 701 | A701V | gCa | gTa | 16 | 16 | B.1.177.58 | 0.021305 |
S | 701 | A701V | gCa | gTa | 16 | 16 | B.1.237 | 0.079602 |
S | 701 | A701V | gCa | gTa | 16 | 16 | B.1.470 | 0.022472 |
S | 701 | A701S | Gca | Tca | 15 | 15 | AY.46.5 | 0.002976 |
S | 701 | A701S | Gca | Tca | 15 | 15 | AY.46.6 | 0.001083 |
S | 701 | A701V | gCa | gTa | 15 | 15 | B.1.1.432 | 0.018987 |
S | 701 | A701V | gCa | gTa | 15 | 15 | B.1.621 | 0.001328 |
S | 701 | A701S | Gca | Tca | 14 | 14 | AY.25 | 0.000084 |
S | 701 | A701V | gCa | gTa | 14 | 14 | B.1.600 | 0.081871 |
S | 701 | A701V | gCa | gTa | 14 | 14 | B.6.6 | 0.012444 |
S | 701 | A701V | gCa | gTa | 14 | 14 | C.37 | 0.001625 |
S | 701 | A701S | Gca | Tca | 14 | 14 | P.1 | 0.000221 |
S | 701 | A701S | Gca | Tca | 13 | 13 | AY.102 | 0.000345 |
S | 701 | A701V | gCa | gTa | 13 | 13 | AY.103 | 0.000081 |
S | 701 | A701S | Gca | Tca | 13 | 13 | AY.98 | 0.001027 |
S | 701 | A701S | Gca | Tca | 13 | 13 | B.1.1 | 0.000236 |
S | 701 | A701V | gCa | gTa | 13 | 13 | B.1.1.306 | 0.005699 |
S | 701 | A701V | gCa | gTa | 13 | 13 | B.1.177.73 | 0.007361 |
S | 701 | A701V | gCa | gTa | 13 | 13 | P.1.7 | 0.004151 |
S | 701 | A701T | Gca | Aca | 11 | 11 | AY.4 | 0.000017 |
S | 701 | A701V | gCa | gTa | 11 | 11 | B.1.1.507 | 0.095652 |
S | 701 | A701del1 | gcA | gc- | 5 | 10 | All | 0.000001 |
S | 701 | A701del1 | gCA | gT- | 2 | 10 | All | 0 |
S | 701 | A701del1 | GcA | Ac- | 1 | 10 | All | 0 |
S | 701 | A701del1 | Gca | -ca | 1 | 10 | All | 0 |
S | 701 | A701del1 | gCa | g-a | 1 | 10 | All | 0 |
S | 701 | A701S | Gca | Tca | 10 | 10 | AY.103 | 0.000062 |
S | 701 | A701V | gCa | gTa | 10 | 10 | B.1.221 | 0.00071 |
S | 701 | A701V | gCa | gTa | 10 | 10 | B.1.554 | 0.044053 |
S | 701 | A701V | gCa | gTa | 10 | 10 | P.1.14 | 0.000478 |
S | 701 | A701V | gCa | gTa | 9 | 9 | AY.100 | 0.000414 |
S | 701 | A701V | gCa | gTa | 9 | 9 | AY.102 | 0.000239 |
S | 701 | A701V | gCa | gTa | 9 | 9 | AY.113 | 0.001282 |
S | 701 | A701V | gCa | gTa | 9 | 9 | AY.121 | 0.001218 |
S | 701 | A701V | gCa | gTa | 9 | 9 | AY.29 | 0.000142 |
S | 701 | A701S | Gca | Tca | 9 | 9 | AY.29 | 0.000142 |
S | 701 | A701S | Gca | Tca | 9 | 9 | AY.75.1 | 0.001623 |
S | 701 | A701V | gCa | gTa | 9 | 9 | B | 0.00115 |
S | 701 | A701V | gCa | gTa | 9 | 9 | B.1.36 | 0.001313 |
S | 701 | A701T | Gca | Aca | 9 | 9 | B.1.36.8 | 0.009 |
S | 701 | A701V | gCa | gTa | 9 | 9 | B.1.439 | 0.053254 |
S | 701 | A701V | gCa | gTa | 9 | 9 | B.1.561 | 0.003573 |
S | 701 | A701I | GCa | ATa | 7 | 8 | All | 0.000001 |
S | 701 | A701I | GCA | ATT | 1 | 8 | All | 0 |
S | 701 | A701A | gcA | gcG | 8 | 8 | AY.100 | 0.000368 |
S | 701 | A701A | gcA | gcG | 8 | 8 | AY.25 | 0.000048 |
S | 701 | A701S | Gca | Tca | 8 | 8 | AY.39 | 0.000198 |
S | 701 | A701T | Gca | Aca | 8 | 8 | AY.43 | 0.000035 |
S | 701 | A701S | Gca | Tca | 8 | 8 | B.1.177.7 | 0.001319 |
S | 701 | A701V | gCa | gTa | 8 | 8 | B.1.243 | 0.000557 |
S | 701 | A701V | gCa | gTa | 8 | 8 | B.1.381 | 0.0625 |
S | 701 | A701V | gCa | gTa | 8 | 8 | B.1.596 | 0.000697 |
S | 701 | A701L | GCa | TTa | 5 | 7 | All | 0.000001 |
S | 701 | A701L | GCA | CTG | 1 | 7 | All | 0 |
S | 701 | A701L | GCA | CTC | 1 | 7 | All | 0 |
S | 701 | A701S | Gca | Tca | 7 | 7 | AY.100 | 0.000322 |
S | 701 | A701A | gcA | gcT | 7 | 7 | AY.117 | 0.000592 |
S | 701 | A701del | GCA | --- | 7 | 7 | AY.25 | 0.000042 |
S | 701 | A701S | Gca | Tca | 7 | 7 | AY.3 | 0.00007 |
S | 701 | A701G | gCa | gGa | 7 | 7 | AY.44 | 0.000043 |
S | 701 | A701V | gCa | gTa | 7 | 7 | AY.5 | 0.000145 |
S | 701 | A701S | Gca | Tca | 7 | 7 | AY.5.4 | 0.001937 |
S | 701 | A701V | gCa | gTa | 7 | 7 | B.1.1.189 | 0.01059 |
S | 701 | A701T | Gca | Aca | 7 | 7 | B.1.177 | 0.000092 |
S | 701 | A701A | gcA | gcT | 7 | 7 | B.1.214.2 | 0.004197 |
S | 701 | A701S | Gca | Tca | 7 | 7 | B.1.367 | 0.005547 |
S | 701 | A701V | gCa | gTa | 7 | 7 | B.1.620 | 0.006623 |
S | 701 | A701V | gCa | gTa | 6 | 6 | AY.26 | 0.00017 |
S | 701 | A701T | Gca | Aca | 6 | 6 | AY.33 | 0.000401 |
S | 701 | A701E | gCa | gAa | 6 | 6 | AY.43 | 0.000027 |
S | 701 | A701S | Gca | Tca | 6 | 6 | B.1 | 0.000055 |
S | 701 | A701del | GCA | --- | 6 | 6 | B.1 | 0.000055 |
S | 701 | A701V | gCa | gTa | 6 | 6 | B.1.1.170 | 0.007481 |
S | 701 | A701T | Gca | Aca | 6 | 6 | B.1.184 | 0.352941 |
S | 701 | A701V | gCa | gTa | 6 | 6 | B.1.270 | 0.033708 |
S | 701 | A701V | gCa | gTa | 6 | 6 | B.1.595 | 0.001566 |
S | 701 | A701V | gCa | gTa | 6 | 6 | Q.1 | 0.000758 |
S | 701 | A701V | gCa | gTa | 6 | 6 | Q.3 | 0.00087 |
S | 701 | A701A | gcA | gcT | 3 | 5 | AY.103 | 0.000019 |
S | 701 | A701A | gcA | gcG | 1 | 5 | AY.103 | 0.000006 |
S | 701 | A701A | gcA | gcC | 1 | 5 | AY.103 | 0.000006 |
S | 701 | A701V | gCa | gTa | 5 | 5 | AY.116 | 0.001434 |
S | 701 | A701S | Gca | Tca | 5 | 5 | AY.119 | 0.000177 |
S | 701 | A701S | Gca | Tca | 5 | 5 | AY.33 | 0.000334 |
S | 701 | A701V | gCa | gTa | 5 | 5 | AY.34 | 0.000485 |
S | 701 | A701S | Gca | Tca | 5 | 5 | AY.4.5 | 0.000537 |
S | 701 | A701V | gCa | gTa | 5 | 5 | AY.42 | 0.000201 |
S | 701 | A701A | gcA | gcG | 3 | 5 | AY.43 | 0.000013 |
S | 701 | A701A | gcA | gcT | 2 | 5 | AY.43 | 0.000009 |
S | 701 | A701S | Gca | Tca | 5 | 5 | AY.71 | 0.002375 |
S | 701 | A701V | gCa | gTa | 5 | 5 | AY.84 | 0.002187 |
S | 701 | A701V | gCa | gTa | 5 | 5 | AY.99.2 | 0.000461 |
S | 701 | A701V | gCa | gTa | 5 | 5 | B.1.1.214 | 0.000277 |
S | 701 | A701V | gCa | gTa | 5 | 5 | B.1.1.409 | 0.014164 |
S | 701 | A701S | Gca | Tca | 5 | 5 | B.1.177 | 0.000066 |
S | 701 | A701V | gCa | gTa | 5 | 5 | B.1.177.10 | 0.00439 |
S | 701 | A701S | Gca | Tca | 5 | 5 | B.1.2 | 0.000044 |
S | 701 | A701I | GCa | ATa | 5 | 5 | B.1.351 | 0.000149 |
S | 701 | A701L | GCa | TTa | 5 | 5 | B.1.351 | 0.000149 |
S | 701 | A701V | gCa | gTa | 5 | 5 | B.1.423 | 0.05102 |
S | 701 | A701V | gCa | gTa | 5 | 5 | B.1.525 | 0.000566 |
S | 701 | A701A | gcA | gcC | 2 | 5 | D.2 | 0.00015 |
S | 701 | A701A | gcA | gcT | 2 | 5 | D.2 | 0.00015 |
S | 701 | A701A | gcA | gcG | 1 | 5 | D.2 | 0.000075 |
S | 701 | A701V | gCa | gTa | 5 | 5 | N.5 | 0.008834 |
S | 701 | A701S | Gca | Tca | 5 | 5 | P.1.1 | 0.001588 |
S | 701 | A701A | gcA | gcC | 3 | 4 | 0.166667 | |
S | 701 | A701G | gCA | gGC | 2 | 4 | 0.111111 | |
S | 701 | A701G | gCa | gGa | 2 | 4 | 0.111111 | |
S | 701 | A701A | gcA | gcG | 1 | 4 | 0.055556 | |
S | 701 | A701K | GCa | AAa | 3 | 4 | All | 0.000001 |
S | 701 | A701K | GCA | AAG | 1 | 4 | All | 0 |
S | 701 | A701T | Gca | Aca | 4 | 4 | AY.103 | 0.000025 |
S | 701 | A701V | gCa | gTa | 4 | 4 | AY.120 | 0.000149 |
S | 701 | A701S | Gca | Tca | 4 | 4 | AY.121 | 0.000541 |
S | 701 | A701A | gcA | gcG | 4 | 4 | AY.20 | 0.000155 |
S | 701 | A701V | gCa | gTa | 4 | 4 | AY.35 | 0.000932 |
S | 701 | A701V | gCa | gTa | 4 | 4 | AY.46 | 0.000416 |
S | 701 | A701V | gCa | gTa | 4 | 4 | AY.46.4 | 0.000658 |
S | 701 | A701S | Gca | Tca | 4 | 4 | AY.69 | 0.000747 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.1.139 | 0.090909 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.1.159 | 0.018692 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.1.220 | 0.007435 |
S | 701 | A701S | Gca | Tca | 4 | 4 | B.1.1.311 | 0.001433 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.1.434 | 0.001394 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.1.44 | 0.009639 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.1.50 | 0.002716 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.36.29 | 0.002069 |
S | 701 | A701S | Gca | Tca | 4 | 4 | B.1.406 | 0.024242 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.427 | 0.000202 |
S | 701 | A701E | gCa | gAa | 4 | 4 | B.1.526 | 0.000094 |
S | 701 | A701T | Gca | Aca | 4 | 4 | B.1.617.2 | 0.000015 |
S | 701 | A701V | gCa | gTa | 4 | 4 | B.1.628 | 0.001409 |
S | 701 | A701T | Gca | Aca | 4 | 4 | C.36.3 | 0.002269 |
S | 701 | A701A | gcA | gcT | 4 | 4 | P.1.15 | 0.000929 |
S | 701 | A701V | gCa | gTa | 4 | 4 | P.1.16 | 0.001496 |
S | 701 | A701S | Gca | Tca | 2 | 3 | 0.111111 | |
S | 701 | A701S | GcA | TcC | 1 | 3 | 0.055556 | |
S | 701 | A701V | gCa | gTa | 3 | 3 | A | 0.001161 |
S | 701 | A701V | gCa | gTa | 3 | 3 | A.2 | 0.001985 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.106 | 0.001005 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.11 | 0.004016 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.119 | 0.000106 |
S | 701 | A701A | gcA | gcG | 3 | 3 | AY.26 | 0.000085 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.27 | 0.000194 |
S | 701 | A701E | gCa | gAa | 3 | 3 | AY.3 | 0.00003 |
S | 701 | A701T | Gca | Aca | 3 | 3 | AY.42 | 0.000121 |
S | 701 | A701A | gcA | gcG | 2 | 3 | AY.42 | 0.00008 |
S | 701 | A701A | gcA | gcT | 1 | 3 | AY.42 | 0.00004 |
S | 701 | A701del | GCA | --- | 3 | 3 | AY.43 | 0.000013 |
S | 701 | A701T | Gca | Aca | 3 | 3 | AY.45 | 0.000365 |
S | 701 | A701A | gcA | gcT | 3 | 3 | AY.47 | 0.000093 |
S | 701 | A701S | Gca | Tca | 3 | 3 | AY.47 | 0.000093 |
S | 701 | A701S | Gca | Tca | 3 | 3 | AY.61 | 0.000314 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.74 | 0.000347 |
S | 701 | A701S | Gca | Tca | 3 | 3 | AY.9 | 0.000203 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.9.2 | 0.00011 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.90 | 0.002053 |
S | 701 | A701V | gCa | gTa | 3 | 3 | AY.98 | 0.000237 |
S | 701 | A701T | Gca | Aca | 3 | 3 | B.1 | 0.000027 |
S | 701 | A701A | gcA | gcC | 2 | 3 | B.1 | 0.000018 |
S | 701 | A701A | gcA | gcT | 1 | 3 | B.1 | 0.000009 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.1.345 | 0.130435 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.1.389 | 0.018182 |
S | 701 | A701del | GCA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
S | 701 | A701P | Gca | Cca | 3 | 3 | B.1.1.7 | 0.000003 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.157 | 0.008955 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.177.4 | 0.000633 |
S | 701 | A701T | Gca | Aca | 3 | 3 | B.1.2 | 0.000026 |
S | 701 | A701A | gcA | gcC | 2 | 3 | B.1.2 | 0.000018 |
S | 701 | A701A | gcA | gcG | 1 | 3 | B.1.2 | 0.000009 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.234 | 0.000396 |
S | 701 | A701S | Gca | Tca | 3 | 3 | B.1.234 | 0.000396 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.260 | 0.010033 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.36.18 | 0.001261 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.367 | 0.002377 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.409 | 0.002344 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.530 | 0.021429 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.567 | 0.01 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.609 | 0.001438 |
S | 701 | A701P | Gca | Cca | 2 | 3 | B.1.617.2 | 0.000008 |
S | 701 | A701P | GcA | CcG | 1 | 3 | B.1.617.2 | 0.000004 |
S | 701 | A701V | gCa | gTa | 3 | 3 | B.1.637 | 0.000219 |
S | 701 | A701S | Gca | Tca | 3 | 3 | B.1.9.5 | 0.017045 |
S | 701 | A701S | Gca | Tca | 3 | 3 | C.37 | 0.000348 |
S | 701 | A701A | gcA | gcT | 2 | 3 | C.37 | 0.000232 |
S | 701 | A701A | gcA | gcG | 1 | 3 | C.37 | 0.000116 |
S | 701 | A701del | GCA | --- | 3 | 3 | P.1 | 0.000047 |
S | 701 | A701T | Gca | Aca | 3 | 3 | P.1 | 0.000047 |
S | 701 | A701V | gCa | gTa | 3 | 3 | P.1.15 | 0.000697 |
S | 701 | A701T | Gca | Aca | 3 | 3 | P.1.15 | 0.000697 |
S | 701 | A701A | gcA | gcT | 3 | 3 | P.1.7 | 0.000958 |
S | 701 | A701V | gCa | gTa | 3 | 3 | P.2 | 0.00056 |
S | 701 | A701V | gCa | gTa | 3 | 3 | P.3 | 0.004785 |
S | 701 | A701del | GCA | --- | 2 | 2 | 0.111111 | |
S | 701 | A701E | gCA | gAG | 1 | 2 | 0.055556 | |
S | 701 | A701T | Gca | Aca | 1 | 2 | 0.055556 | |
S | 701 | A701E | gCa | gAa | 1 | 2 | 0.055556 | |
S | 701 | A701K | GCa | AAa | 1 | 2 | 0.055556 | |
S | 701 | A701T | GcA | AcG | 1 | 2 | 0.055556 | |
S | 701 | A701K | GCA | AAG | 1 | 2 | 0.055556 | |
S | 701 | A701V | gCa | gTa | 2 | 2 | A.2.5 | 0.000998 |
S | 701 | A701V | gCa | gTa | 2 | 2 | A.23.1 | 0.001408 |
S | 701 | A701Q | GCA | CAG | 1 | 2 | All | 0 |
S | 701 | A701Q | GCa | CAa | 1 | 2 | All | 0 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.1 | 0.000791 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.107 | 0.000932 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.108 | 0.002205 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.113 | 0.000285 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.114 | 0.000462 |
S | 701 | A701A | gcA | gcT | 2 | 2 | AY.116 | 0.000574 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.117 | 0.000169 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.118 | 0.000125 |
S | 701 | A701A | gcA | gcT | 2 | 2 | AY.120 | 0.000074 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.20 | 0.000078 |
S | 701 | A701T | Gca | Aca | 2 | 2 | AY.25 | 0.000012 |
S | 701 | A701T | Gca | Aca | 2 | 2 | AY.29 | 0.000032 |
S | 701 | A701T | Gca | Aca | 2 | 2 | AY.3 | 0.00002 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.36 | 0.000296 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.38 | 0.000999 |
S | 701 | A701L | GCA | CTG | 1 | 2 | AY.43 | 0.000004 |
S | 701 | A701P | GcA | CcG | 1 | 2 | AY.43 | 0.000004 |
S | 701 | A701L | GCA | CTC | 1 | 2 | AY.43 | 0.000004 |
S | 701 | A701P | GcA | CcC | 1 | 2 | AY.43 | 0.000004 |
S | 701 | A701T | Gca | Aca | 2 | 2 | AY.44 | 0.000012 |
S | 701 | A701del | GCA | --- | 2 | 2 | AY.44 | 0.000012 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.45 | 0.000243 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.47 | 0.000062 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.6 | 0.000082 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.6 | 0.000082 |
S | 701 | A701A | gcA | gcG | 2 | 2 | AY.6 | 0.000082 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.65 | 0.001066 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.68 | 0.000547 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.70 | 0.000417 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.75 | 0.000112 |
S | 701 | A701V | gCa | gTa | 2 | 2 | AY.75.1 | 0.000361 |
S | 701 | A701S | Gca | Tca | 2 | 2 | AY.85 | 0.000854 |
S | 701 | A701G | gCA | gGG | 1 | 2 | AY.9.2 | 0.000037 |
S | 701 | A701G | gCA | gGT | 1 | 2 | AY.9.2 | 0.000037 |
S | 701 | A701del1 | gcA | gc- | 2 | 2 | B.1 | 0.000018 |
S | 701 | A701I | GCA | ATT | 1 | 2 | B.1.1 | 0.000018 |
S | 701 | A701I | GCa | ATa | 1 | 2 | B.1.1 | 0.000018 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.1 | 0.000653 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.161 | 0.007067 |
S | 701 | A701S | Gca | Tca | 2 | 2 | B.1.1.169 | 0.036364 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.277 | 0.001517 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.28 | 0.000622 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.284 | 0.000215 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.317 | 0.000823 |
S | 701 | A701A | gcA | gcT | 1 | 2 | B.1.1.317 | 0.000412 |
S | 701 | A701A | gcA | gcG | 1 | 2 | B.1.1.317 | 0.000412 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.318 | 0.000604 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.1.33 | 0.000842 |
S | 701 | A701S | Gca | Tca | 2 | 2 | B.1.1.50 | 0.001358 |
S | 701 | A701E | gCa | gAa | 2 | 2 | B.1.1.7 | 0.000002 |
S | 701 | A701G | gCa | gGa | 2 | 2 | B.1.177 | 0.000026 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.177.15 | 0.001262 |
S | 701 | A701S | Gca | Tca | 2 | 2 | B.1.177.40 | 0.010309 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.177.7 | 0.00033 |
S | 701 | A701A | gcA | gcG | 2 | 2 | B.1.177.86 | 0.000367 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.177.86 | 0.000367 |
S | 701 | A701E | gCa | gAa | 2 | 2 | B.1.2 | 0.000018 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.219 | 0.018868 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.240 | 0.000431 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.265 | 0.002541 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.36.16 | 0.002849 |
S | 701 | A701T | Gca | Aca | 2 | 2 | B.1.36.29 | 0.001035 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.375 | 0.001639 |
S | 701 | A701S | Gca | Tca | 2 | 2 | B.1.389 | 0.002004 |
S | 701 | A701E | gCa | gAa | 2 | 2 | B.1.429 | 0.000047 |
S | 701 | A701A | gcA | gcG | 2 | 2 | B.1.438.1 | 0.000215 |
S | 701 | A701A | gcA | gcG | 1 | 2 | B.1.499 | 0.00105 |
S | 701 | A701A | gcA | gcT | 1 | 2 | B.1.499 | 0.00105 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.527 | 0.007407 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.575 | 0.000607 |
S | 701 | A701del1 | GcA | Ac- | 1 | 2 | B.1.596 | 0.000087 |
S | 701 | A701del1 | gcA | gc- | 1 | 2 | B.1.596 | 0.000087 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.602 | 0.013072 |
S | 701 | A701del | GCA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 701 | A701E | gCa | gAa | 1 | 2 | B.1.617.2 | 0.000004 |
S | 701 | A701Q | GCA | CAG | 1 | 2 | B.1.617.2 | 0.000004 |
S | 701 | A701Q | GCa | CAa | 1 | 2 | B.1.617.2 | 0.000004 |
S | 701 | A701E | gCA | gAG | 1 | 2 | B.1.617.2 | 0.000004 |
S | 701 | A701T | Gca | Aca | 2 | 2 | B.1.621 | 0.000177 |
S | 701 | A701S | Gca | Tca | 2 | 2 | B.1.621 | 0.000177 |
S | 701 | A701del | GCA | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.625 | 0.004706 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.627 | 0.00404 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.1.634 | 0.006849 |
S | 701 | A701V | gCa | gTa | 2 | 2 | B.55 | 0.0059 |
S | 701 | A701V | gCa | gTa | 2 | 2 | C.1 | 0.004785 |
S | 701 | A701V | gCa | gTa | 2 | 2 | C.16 | 0.002121 |
S | 701 | A701V | gCa | gTa | 2 | 2 | D.2 | 0.00015 |
S | 701 | A701V | gCa | gTa | 2 | 2 | P.1.1 | 0.000635 |
S | 701 | A701S | Gca | Tca | 2 | 2 | P.1.14 | 0.000096 |
S | 701 | A701T | Gca | Aca | 2 | 2 | P.1.14 | 0.000096 |
S | 701 | A701A | gcA | gcC | 2 | 2 | P.1.14 | 0.000096 |
S | 701 | A701del | GCA | --- | 2 | 2 | P.1.15 | 0.000465 |
S | 701 | A701V | gCa | gTa | 2 | 2 | P.1.17 | 0.000324 |
S | 701 | A701V | gCa | gTa | 2 | 2 | P.1.2 | 0.002312 |
S | 701 | A701S | Gca | Tca | 2 | 2 | P.2 | 0.000373 |
S | 701 | A701V | gCa | gTa | 2 | 2 | Q.8 | 0.00033 |
S | 701 | A701V | gCa | gTa | 2 | 2 | R.1 | 0.00018 |
S | 701 | A701S | Gca | Tca | 1 | 1 | A.2 | 0.000662 |
S | 701 | A701V | gCa | gTa | 1 | 1 | A.2.5.2 | 0.001572 |
S | 701 | A701V | gCa | gTa | 1 | 1 | A.3 | 0.002096 |
S | 701 | A701X | GCa | TGa | 1 | 1 | All | 0 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.10 | 0.00053 |
S | 701 | A701del | GCA | --- | 1 | 1 | AY.103 | 0.000006 |
S | 701 | A701del1 | Gca | -ca | 1 | 1 | AY.103 | 0.000006 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.104 | 0.001984 |
S | 701 | A701A | gcA | gcT | 1 | 1 | AY.106 | 0.000335 |
S | 701 | A701A | gcA | gcT | 1 | 1 | AY.113 | 0.000142 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.114 | 0.000231 |
S | 701 | A701T | Gca | Aca | 1 | 1 | AY.114 | 0.000231 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.117 | 0.000085 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.120 | 0.000037 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.120.2 | 0.001285 |
S | 701 | A701A | gcA | gcT | 1 | 1 | AY.121 | 0.000135 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.13 | 0.000161 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.13 | 0.000161 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.14 | 0.000088 |
S | 701 | A701A | gcA | gcG | 1 | 1 | AY.14 | 0.000088 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.16 | 0.00038 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.16.1 | 0.00047 |
S | 701 | A701P | Gca | Cca | 1 | 1 | AY.20 | 0.000039 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.22 | 0.002092 |
S | 701 | A701del | GCA | --- | 1 | 1 | AY.26 | 0.000028 |
S | 701 | A701K | GCa | AAa | 1 | 1 | AY.3 | 0.00001 |
S | 701 | A701A | gcA | gcT | 1 | 1 | AY.3 | 0.00001 |
S | 701 | A701A | gcA | gcT | 1 | 1 | AY.3.1 | 0.000085 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.30 | 0.000396 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.32 | 0.000532 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.33 | 0.000067 |
S | 701 | A701P | Gca | Cca | 1 | 1 | AY.33 | 0.000067 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.38 | 0.000499 |
S | 701 | A701del1 | gcA | gc- | 1 | 1 | AY.38 | 0.000499 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.4.3 | 0.000842 |
S | 701 | A701A | gcA | gcG | 1 | 1 | AY.4.5 | 0.000107 |
S | 701 | A701E | gCa | gAa | 1 | 1 | AY.4.5 | 0.000107 |
S | 701 | A701X | GCa | TGa | 1 | 1 | AY.43 | 0.000004 |
S | 701 | A701del1 | gCa | g-a | 1 | 1 | AY.43 | 0.000004 |
S | 701 | A701K | GCa | AAa | 1 | 1 | AY.43 | 0.000004 |
S | 701 | A701del1 | gCA | gT- | 1 | 1 | AY.44 | 0.000006 |
S | 701 | A701T | Gca | Aca | 1 | 1 | AY.46.1 | 0.001027 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.46.6 | 0.000072 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.5 | 0.000021 |
S | 701 | A701A | gcA | gcT | 1 | 1 | AY.5 | 0.000021 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.5.3 | 0.000337 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
S | 701 | A701A | gcA | gcG | 1 | 1 | AY.55 | 0.000917 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.55 | 0.000917 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.59 | 0.00053 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.61 | 0.000105 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.62 | 0.000436 |
S | 701 | A701A | gcA | gcC | 1 | 1 | AY.67 | 0.000464 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.67 | 0.000464 |
S | 701 | A701T | Gca | Aca | 1 | 1 | AY.69 | 0.000187 |
S | 701 | A701A | gcA | gcG | 1 | 1 | AY.71 | 0.000475 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.74 | 0.000116 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.75 | 0.000056 |
S | 701 | A701E | gCa | gAa | 1 | 1 | AY.75 | 0.000056 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.84 | 0.000437 |
S | 701 | A701del | GCA | --- | 1 | 1 | AY.84 | 0.000437 |
S | 701 | A701A | gcA | gcT | 1 | 1 | AY.88 | 0.000884 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.9 | 0.000068 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.9.1 | 0.000084 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.9.2.1 | 0.001976 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.91.1 | 0.004065 |
S | 701 | A701T | Gca | Aca | 1 | 1 | AY.92 | 0.000287 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.92 | 0.000287 |
S | 701 | A701T | Gca | Aca | 1 | 1 | AY.98 | 0.000079 |
S | 701 | A701S | Gca | Tca | 1 | 1 | AY.98.1 | 0.000048 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
S | 701 | A701del | GCA | --- | 1 | 1 | AY.99 | 0.001049 |
S | 701 | A701T | Gca | Aca | 1 | 1 | AY.99.2 | 0.000092 |
S | 701 | A701V | gCa | gTa | 1 | 1 | AZ.1 | 0.000867 |
S | 701 | A701G | gCa | gGa | 1 | 1 | B | 0.000128 |
S | 701 | A701A | gcA | gcG | 1 | 1 | B.1.1 | 0.000018 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.1 | 0.000327 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.10 | 0.001115 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.137 | 0.0125 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.141 | 0.002012 |
S | 701 | A701A | gcA | gcT | 1 | 1 | B.1.1.170 | 0.001247 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.204 | 0.00304 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.222 | 0.000204 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.226 | 0.005814 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.243 | 0.004082 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.269 | 0.001353 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.279 | 0.001121 |
S | 701 | A701A | gcA | gcC | 1 | 1 | B.1.1.28 | 0.000311 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.28 | 0.000311 |
S | 701 | A701A | gcA | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.34 | 0.013158 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.349 | 0.010309 |
S | 701 | A701del | GCA | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.372 | 0.000689 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.374 | 0.002375 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.375 | 0.011905 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.416 | 0.000905 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.429 | 0.004608 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.48 | 0.002874 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.486 | 0.001577 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.519 | 0.00004 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.521 | 0.005348 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.1.528 | 0.004808 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.1.53 | 0.013699 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.1.70 | 0.000341 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.83 | 0.00271 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.1.98 | 0.018519 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.110.3 | 0.000718 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.126 | 0.001276 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.139 | 0.000733 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.160.14 | 0.002119 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.160.32 | 0.004292 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.160.8 | 0.001289 |
S | 701 | A701A | gcA | gcG | 1 | 1 | B.1.177 | 0.000013 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.177.12 | 0.000152 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.177.21 | 0.000076 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.177.42 | 0.000894 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.177.69 | 0.001484 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.177.81 | 0.000189 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.177.87 | 0.000728 |
S | 701 | A701del1 | gCA | gT- | 1 | 1 | B.1.2 | 0.000009 |
S | 701 | A701del | GCA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.218 | 0.005155 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.221.3 | 0.000833 |
S | 701 | A701G | gCa | gGa | 1 | 1 | B.1.232 | 0.000537 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.241 | 0.000812 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.242 | 0.018868 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.243 | 0.00007 |
S | 701 | A701A | gcA | gcG | 1 | 1 | B.1.243 | 0.00007 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.258 | 0.000067 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.258.11 | 0.000396 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.258.17 | 0.000104 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.258.17 | 0.000104 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.260 | 0.003344 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.276 | 0.016949 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.279 | 0.000514 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.284 | 0.013158 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.311 | 0.000275 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.36.10 | 0.004785 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.36.10 | 0.004785 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
S | 701 | A701A | gcA | gcG | 1 | 1 | B.1.36.29 | 0.000517 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.36.35 | 0.002604 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.36.8 | 0.001 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.36.9 | 0.003215 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.362 | 0.001541 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.369 | 0.000285 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.396 | 0.000706 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.397 | 0.004854 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.399 | 0.001934 |
S | 701 | A701E | gCa | gAa | 1 | 1 | B.1.404 | 0.001302 |
S | 701 | A701A | gcA | gcT | 1 | 1 | B.1.409 | 0.000781 |
S | 701 | A701del1 | gcA | gc- | 1 | 1 | B.1.427 | 0.00005 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.469 | 0.00361 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.497 | 0.000315 |
S | 701 | A701I | GCa | ATa | 1 | 1 | B.1.526 | 0.000024 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.533 | 0.009615 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.533 | 0.009615 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.560 | 0.00463 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.564 | 0.000426 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.580 | 0.004065 |
S | 701 | A701T | Gca | Aca | 1 | 1 | B.1.582 | 0.000491 |
S | 701 | A701del | GCA | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.601 | 0.030303 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.618 | 0.004032 |
S | 701 | A701del | GCA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.1.621.1 | 0.000506 |
S | 701 | A701del | GCA | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 701 | A701V | gCa | gTa | 1 | 1 | B.1.636 | 0.006711 |
S | 701 | A701del | GCA | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 701 | A701S | Gca | Tca | 1 | 1 | B.6 | 0.00091 |
S | 701 | A701del | GCA | --- | 1 | 1 | C.37 | 0.000116 |
S | 701 | A701P | Gca | Cca | 1 | 1 | D.2 | 0.000075 |
S | 701 | A701S | Gca | Tca | 1 | 1 | D.3 | 0.005917 |
S | 701 | A701S | Gca | Tca | 1 | 1 | N.5 | 0.001767 |
S | 701 | A701G | gCa | gGa | 1 | 1 | P.1 | 0.000016 |
S | 701 | A701A | gcA | gcT | 1 | 1 | P.1 | 0.000016 |
S | 701 | A701S | Gca | Tca | 1 | 1 | P.1.10 | 0.000269 |
S | 701 | A701del | GCA | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 701 | A701V | gCa | gTa | 1 | 1 | P.1.13 | 0.000898 |
S | 701 | A701S | Gca | Tca | 1 | 1 | P.1.7 | 0.000319 |
S | 701 | A701T | Gca | Aca | 1 | 1 | P.2 | 0.000187 |
S | 701 | A701S | Gca | Tca | 1 | 1 | P.3 | 0.001595 |
S | 701 | A701T | Gca | Aca | 1 | 1 | Q.1 | 0.000126 |
S | 701 | A701S | Gca | Tca | 1 | 1 | Q.3 | 0.000145 |
S | 701 | A701V | gCa | gTa | 1 | 1 | Q.7 | 0.001111 |
S | 701 | A701S | Gca | Tca | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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