CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 695

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S695Y695YsyntaCtaT10021002123645-23647
S695Y695deldelTAC---3636123645-23647
S695Y695HnonsynTacCac1111123645-23647
S695Y695CnonsyntActGc1090.923645-23647
S695Y695CnonsyntACtGT1010.123645-23647
S695Y695XnonsyntaCtaA970.77777823645-23647
S695Y695XnonsyntaCtaG920.22222223645-23647
S695Y695SnonsyntActCc740.57142923645-23647
S695Y695SnonsynTAcAGc720.28571423645-23647
S695Y695SnonsyntACtCA710.14285723645-23647
S695Y695FnonsyntActTc66123645-23647
S695Y695LnonsynTAcCTc620.33333323645-23647
S695Y695LnonsyntACtTG620.33333323645-23647
S695Y695LnonsyntACtTA610.16666723645-23647
S695Y695LnonsynTACCTA610.16666723645-23647
S695Y695del1deltaCta-33123645-23647
S695Y695NnonsynTacAac22123645-23647
S695Y695DnonsynTacGac22123645-23647
S695Y695QnonsynTaCCaA22123645-23647
S695Y695KnonsynTaCAaG210.523645-23647
S695Y695PnonsynTAcCCc210.523645-23647
S695Y695PnonsynTACCCA210.523645-23647
S695Y695TnonsynTAcACc210.523645-23647
S695Y695TnonsynTACACA210.523645-23647
S695Y695KnonsynTaCAaA210.523645-23647
S695Y695del2delTAc--c11123645-23647
S695Y695RnonsynTACCGT11123645-23647

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S695Y695YtaCtaT10021002All0.000192
S695Y695YtaCtaT421421B.1.1600.01313
S695Y695YtaCtaT143143AY.30.001422
S695Y695YtaCtaT134134B.1.160.180.978102
S695Y695YtaCtaT5757AY.1030.000354
S695Y695YtaCtaT4747B.1.1.70.000042
S695Y695delTAC---3636All0.000007
S695Y695YtaCtaT3434AY.290.000536
S695Y695YtaCtaT3030B.1.617.20.000113
S695Y695YtaCtaT1717AY.430.000075
S695Y695YtaCtaT1414AY.440.000085
S695Y695HTacCac1111All0.000002
S695Y695CtActGc910All0.000002
S695Y695CtACtGT110All0
S695Y695XtaCtaA79All0.000001
S695Y695XtaCtaG29All0
S695Y695YtaCtaT99AY.420.000362
S695Y695YtaCtaT88B.10.000073
S695Y695StActCc47All0.000001
S695Y695STAcAGc27All0
S695Y695StACtCA17All0
S695Y695YtaCtaT77B.1.20.000062
S695Y695YtaCtaT77B.1.2210.000497
S695Y695FtActTc66All0.000001
S695Y695LtACtTG26All0
S695Y695LTAcCTc26All0
S695Y695LTACCTA16All0
S695Y695LtACtTA16All0
S695Y695YtaCtaT66AY.40.000009
S695Y695delTAC---66B.10.000055
S695Y695XtaCtaA350.166667
S695Y695STAcAGc250.111111
S695Y695LtACtTG250.111111
S695Y695XtaCtaG250.111111
S695Y695StActCc250.111111
S695Y695LTACCTA150.055556
S695Y695LTAcCTc150.055556
S695Y695StACtCA150.055556
S695Y695LtACtTA150.055556
S695Y695YtaCtaT55AY.1020.000133
S695Y695YtaCtaT55B.1.1.2160.004452
S695Y695YtaCtaT55B.1.160.320.021459
S695Y695CtActGc34AY.430.000013
S695Y695CtACtGT14AY.430.000004
S695Y695FtActTc330.166667
S695Y695del1taCta-33All0.000001
S695Y695delTAC---33AY.250.000018
S695Y695YtaCtaT33B.1.10.000054
S695Y695YtaCtaT33B.1.1.390.001529
S695Y695YtaCtaT33B.1.1770.00004
S695Y695delTAC---33P.10.000047
S695Y695delTAC---33P.1.150.000697
S695Y695HTacCac220.111111
S695Y695QTaCCaA220.111111
S695Y695PTACCCA120.055556
S695Y695PTAcCCc120.055556
S695Y695TTACACA120.055556
S695Y695TTAcACc120.055556
S695Y695NTacAac22All0
S695Y695QTaCCaA22All0
S695Y695DTacGac22All0
S695Y695TTACACA12All0
S695Y695KTaCAaG12All0
S695Y695PTAcCCc12All0
S695Y695PTACCCA12All0
S695Y695TTAcACc12All0
S695Y695KTaCAaA12All0
S695Y695YtaCtaT22AY.1200.000074
S695Y695YtaCtaT22AY.230.000139
S695Y695HTacCac22AY.40.000003
S695Y695delTAC---22AY.430.000009
S695Y695delTAC---22AY.440.000012
S695Y695YtaCtaT22AY.470.000062
S695Y695XtaCtaA22B.10.000018
S695Y695delTAC---22B.1.1.70.000002
S695Y695YtaCtaT22B.1.4290.000047
S695Y695delTAC---22B.1.617.20.000008
S695Y695HTacCac22B.1.617.20.000008
S695Y695delTAC---22B.1.6210.000177
S695Y695KTaCAaA110.055556
S695Y695NTacAac110.055556
S695Y695del2TAc--c11All0
S695Y695RTACCGT11All0
S695Y695YtaCtaT11AY.1000.000046
S695Y695del1taCta-11AY.1020.000027
S695Y695delTAC---11AY.1030.000006
S695Y695YtaCtaT11AY.1080.001103
S695Y695YtaCtaT11AY.1160.000287
S695Y695YtaCtaT11AY.1170.000085
S695Y695DTacGac11AY.1170.000085
S695Y695YtaCtaT11AY.1190.000035
S695Y695YtaCtaT11AY.190.00114
S695Y695YtaCtaT11AY.200.000039
S695Y695YtaCtaT11AY.250.000006
S695Y695StActCc11AY.250.000006
S695Y695CtActGc11AY.30.00001
S695Y695YtaCtaT11AY.3.10.000085
S695Y695YtaCtaT11AY.300.000396
S695Y695YtaCtaT11AY.330.000067
S695Y695YtaCtaT11AY.390.000025
S695Y695YtaCtaT11AY.39.1.10.000725
S695Y695DTacGac11AY.40.000002
S695Y695NTacAac11AY.40.000002
S695Y695CtActGc11AY.4.20.000022
S695Y695RTACCGT11AY.430.000004
S695Y695HTacCac11AY.430.000004
S695Y695FtActTc11AY.430.000004
S695Y695CtActGc11AY.440.000006
S695Y695YtaCtaT11AY.450.000122
S695Y695YtaCtaT11AY.5.30.000337
S695Y695YtaCtaT11AY.5.40.000277
S695Y695YtaCtaT11AY.530.000288
S695Y695YtaCtaT11AY.550.000917
S695Y695YtaCtaT11AY.610.000105
S695Y695del1taCta-11AY.610.000105
S695Y695YtaCtaT11AY.740.000116
S695Y695delTAC---11AY.840.000437
S695Y695KTaCAaG11AY.9.20.000037
S695Y695delTAC---11AY.990.001049
S695Y695YtaCtaT11B0.000128
S695Y695HTacCac11B0.000128
S695Y695HTacCac11B.10.000009
S695Y695StActCc11B.1.10.000018
S695Y695CtActGc11B.1.10.000018
S695Y695YtaCtaT11B.1.1.3180.000302
S695Y695delTAC---11B.1.1.3720.000689
S695Y695FtActTc11B.1.1.410.006329
S695Y695YtaCtaT11B.1.1.4320.001266
S695Y695YtaCtaT11B.1.1.5230.001563
S695Y695CtActGc11B.1.1.70.000001
S695Y695XtaCtaA11B.1.1.70.000001
S695Y695HTacCac11B.1.1.70.000001
S695Y695YtaCtaT11B.1.177.230.003236
S695Y695YtaCtaT11B.1.177.40.000211
S695Y695YtaCtaT11B.1.177.600.000218
S695Y695del1taCta-11B.1.20.000009
S695Y695delTAC---11B.1.20.000009
S695Y695YtaCtaT11B.1.2060.000816
S695Y695YtaCtaT11B.1.221.30.000833
S695Y695YtaCtaT11B.1.2580.000067
S695Y695YtaCtaT11B.1.258.170.000104
S695Y695YtaCtaT11B.1.3110.000275
S695Y695YtaCtaT11B.1.3510.00003
S695Y695HTacCac11B.1.3510.00003
S695Y695YtaCtaT11B.1.360.000146
S695Y695YtaCtaT11B.1.4680.005714
S695Y695del2TAc--c11B.1.5960.000087
S695Y695delTAC---11B.1.5960.000087
S695Y695YtaCtaT11B.1.617.10.000129
S695Y695FtActTc11B.1.617.20.000004
S695Y695CtActGc11B.1.617.20.000004
S695Y695LTAcCTc11B.1.617.20.000004
S695Y695delTAC---11B.1.6200.000946
S695Y695delTAC---11B.1.6270.00202
S695Y695delTAC---11B.1.6380.052632
S695Y695XtaCtaA11B.60.00091
S695Y695delTAC---11C.370.000116
S695Y695delTAC---11P.1.130.000898