CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 694 | A694A | syn | gcC | gcT | 2382 | 2244 | 0.942065 | 23642-23644 | |
S | 694 | A694A | syn | gcC | gcA | 2382 | 136 | 0.0570949 | 23642-23644 | |
S | 694 | A694A | syn | gcC | gcG | 2382 | 2 | 0.000839631 | 23642-23644 | |
S | 694 | A694V | nonsyn | gCc | gTc | 1804 | 1802 | 0.998891 | 23642-23644 | |
S | 694 | A694V | nonsyn | gCC | gTA | 1804 | 2 | 0.00110865 | 23642-23644 | |
S | 694 | A694S | nonsyn | Gcc | Tcc | 184 | 181 | 0.983696 | 23642-23644 | |
S | 694 | A694S | nonsyn | GCc | AGc | 184 | 2 | 0.0108696 | 23642-23644 | |
S | 694 | A694S | nonsyn | GcC | TcT | 184 | 1 | 0.00543478 | 23642-23644 | |
S | 694 | A694T | nonsyn | Gcc | Acc | 73 | 72 | 0.986301 | 23642-23644 | |
S | 694 | A694T | nonsyn | GcC | AcT | 73 | 1 | 0.0136986 | 23642-23644 | |
S | 694 | A694del | del | GCC | --- | 39 | 39 | 1 | 23642-23644 | |
S | 694 | A694G | nonsyn | gCc | gGc | 18 | 18 | 1 | 23642-23644 | |
S | 694 | A694F | nonsyn | GCc | TTc | 12 | 12 | 1 | 23642-23644 | |
S | 694 | A694P | nonsyn | Gcc | Ccc | 10 | 9 | 0.9 | 23642-23644 | |
S | 694 | A694P | nonsyn | GcC | CcT | 10 | 1 | 0.1 | 23642-23644 | |
S | 694 | A694D | nonsyn | gCc | gAc | 7 | 7 | 1 | 23642-23644 | |
S | 694 | A694E | nonsyn | gCC | gAA | 3 | 3 | 1 | 23642-23644 | |
S | 694 | A694L | nonsyn | GCc | CTc | 2 | 2 | 1 | 23642-23644 | |
S | 694 | A694del2 | del | gCC | g-- | 1 | 1 | 1 | 23642-23644 | |
S | 694 | A694C | nonsyn | GCc | TGc | 1 | 1 | 1 | 23642-23644 | |
S | 694 | A694N | nonsyn | GCc | AAc | 1 | 1 | 1 | 23642-23644 | |
S | 694 | A694I | nonsyn | GCc | ATc | 1 | 1 | 1 | 23642-23644 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 694 | A694A | gcC | gcT | 2244 | 2382 | All | 0.000429 |
S | 694 | A694A | gcC | gcA | 136 | 2382 | All | 0.000026 |
S | 694 | A694A | gcC | gcG | 2 | 2382 | All | 0 |
S | 694 | A694V | gCc | gTc | 1802 | 1804 | All | 0.000345 |
S | 694 | A694V | gCC | gTA | 2 | 1804 | All | 0 |
S | 694 | A694A | gcC | gcT | 1649 | 1649 | B.1.177.54 | 1 |
S | 694 | A694V | gCc | gTc | 437 | 437 | AY.81 | 0.870518 |
S | 694 | A694V | gCc | gTc | 303 | 303 | B.1.1.7 | 0.000271 |
S | 694 | A694S | Gcc | Tcc | 181 | 184 | All | 0.000035 |
S | 694 | A694S | GCc | AGc | 2 | 184 | All | 0 |
S | 694 | A694S | GcC | TcT | 1 | 184 | All | 0 |
S | 694 | A694V | gCc | gTc | 171 | 171 | B.1.617.2 | 0.000644 |
S | 694 | A694A | gcC | gcT | 150 | 150 | B.1.177.4 | 0.031659 |
S | 694 | A694V | gCc | gTc | 131 | 131 | AY.25 | 0.000788 |
S | 694 | A694V | gCc | gTc | 128 | 129 | AY.3 | 0.001273 |
S | 694 | A694V | gCC | gTA | 1 | 129 | AY.3 | 0.00001 |
S | 694 | A694S | Gcc | Tcc | 95 | 95 | B.1.1.7 | 0.000085 |
S | 694 | A694A | gcC | gcT | 69 | 91 | B.1.1.7 | 0.000062 |
S | 694 | A694A | gcC | gcA | 22 | 91 | B.1.1.7 | 0.00002 |
S | 694 | A694V | gCc | gTc | 85 | 86 | AY.43 | 0.000377 |
S | 694 | A694V | gCC | gTA | 1 | 86 | AY.43 | 0.000004 |
S | 694 | A694V | gCc | gTc | 86 | 86 | AY.44 | 0.000523 |
S | 694 | A694T | Gcc | Acc | 72 | 73 | All | 0.000014 |
S | 694 | A694T | GcC | AcT | 1 | 73 | All | 0 |
S | 694 | A694V | gCc | gTc | 73 | 73 | P.1.1 | 0.023189 |
S | 694 | A694A | gcC | gcT | 54 | 55 | AY.75 | 0.003025 |
S | 694 | A694A | gcC | gcA | 1 | 55 | AY.75 | 0.000056 |
S | 694 | A694A | gcC | gcT | 44 | 44 | V.1 | 1 |
S | 694 | A694A | gcC | gcT | 41 | 43 | AY.25 | 0.000247 |
S | 694 | A694A | gcC | gcA | 2 | 43 | AY.25 | 0.000012 |
S | 694 | A694V | gCc | gTc | 43 | 43 | B.1.2 | 0.000379 |
S | 694 | A694del | GCC | --- | 39 | 39 | All | 0.000007 |
S | 694 | A694V | gCc | gTc | 38 | 38 | AY.4 | 0.000059 |
S | 694 | A694A | gcC | gcT | 33 | 35 | AY.4 | 0.000051 |
S | 694 | A694A | gcC | gcA | 2 | 35 | AY.4 | 0.000003 |
S | 694 | A694V | gCc | gTc | 34 | 34 | AY.103 | 0.000211 |
S | 694 | A694A | gcC | gcT | 20 | 32 | B.1.617.2 | 0.000075 |
S | 694 | A694A | gcC | gcA | 12 | 32 | B.1.617.2 | 0.000045 |
S | 694 | A694A | gcC | gcT | 31 | 31 | V.2 | 1 |
S | 694 | A694A | gcC | gcA | 16 | 20 | AY.46 | 0.001665 |
S | 694 | A694A | gcC | gcT | 4 | 20 | AY.46 | 0.000416 |
S | 694 | A694G | gCc | gGc | 18 | 18 | All | 0.000003 |
S | 694 | A694V | gCc | gTc | 17 | 17 | B.1.1 | 0.000308 |
S | 694 | A694A | gcC | gcT | 17 | 17 | B.1.1.311 | 0.006089 |
S | 694 | A694A | gcC | gcA | 8 | 15 | AY.44 | 0.000049 |
S | 694 | A694A | gcC | gcT | 7 | 15 | AY.44 | 0.000043 |
S | 694 | A694V | gCc | gTc | 14 | 14 | AY.100 | 0.000644 |
S | 694 | A694A | gcC | gcA | 13 | 14 | AY.3 | 0.000129 |
S | 694 | A694A | gcC | gcT | 1 | 14 | AY.3 | 0.00001 |
S | 694 | A694T | Gcc | Acc | 14 | 14 | B.1.617.2 | 0.000053 |
S | 694 | A694S | Gcc | Tcc | 13 | 13 | AY.4 | 0.00002 |
S | 694 | A694A | gcC | gcT | 7 | 13 | AY.43 | 0.000031 |
S | 694 | A694A | gcC | gcA | 6 | 13 | AY.43 | 0.000027 |
S | 694 | A694V | gCc | gTc | 13 | 13 | B.1.160 | 0.000405 |
S | 694 | A694S | Gcc | Tcc | 13 | 13 | P.1 | 0.000205 |
S | 694 | A694F | GCc | TTc | 12 | 12 | All | 0.000002 |
S | 694 | A694V | gCc | gTc | 12 | 12 | AY.39 | 0.000297 |
S | 694 | A694T | Gcc | Acc | 11 | 11 | B.1.1.7 | 0.00001 |
S | 694 | A694P | Gcc | Ccc | 9 | 10 | All | 0.000002 |
S | 694 | A694P | GcC | CcT | 1 | 10 | All | 0 |
S | 694 | A694A | gcC | gcT | 9 | 10 | B.1 | 0.000082 |
S | 694 | A694A | gcC | gcA | 1 | 10 | B.1 | 0.000009 |
S | 694 | A694A | gcC | gcT | 9 | 10 | B.1.1 | 0.000163 |
S | 694 | A694A | gcC | gcA | 1 | 10 | B.1.1 | 0.000018 |
S | 694 | A694A | gcC | gcT | 8 | 10 | B.1.177 | 0.000105 |
S | 694 | A694A | gcC | gcA | 2 | 10 | B.1.177 | 0.000026 |
S | 694 | A694V | gCc | gTc | 10 | 10 | B.1.177.21 | 0.000765 |
S | 694 | A694V | gCc | gTc | 10 | 10 | B.1.351 | 0.000297 |
S | 694 | A694S | Gcc | Tcc | 10 | 10 | B.1.617.2 | 0.000038 |
S | 694 | A694G | gCc | gGc | 9 | 9 | AY.43 | 0.00004 |
S | 694 | A694A | gcC | gcA | 9 | 9 | AY.46.1 | 0.00924 |
S | 694 | A694V | gCc | gTc | 9 | 9 | B.1 | 0.000082 |
S | 694 | A694F | GCc | TTc | 9 | 9 | B.1.177 | 0.000119 |
S | 694 | A694V | gCc | gTc | 9 | 9 | B.1.427 | 0.000454 |
S | 694 | A694V | gCc | gTc | 9 | 9 | B.1.526 | 0.000212 |
S | 694 | A694V | gCc | gTc | 8 | 8 | B.1.1.519 | 0.000318 |
S | 694 | A694D | gCc | gAc | 7 | 7 | All | 0.000001 |
S | 694 | A694T | Gcc | Acc | 7 | 7 | AY.100 | 0.000322 |
S | 694 | A694S | Gcc | Tcc | 6 | 7 | AY.43 | 0.000027 |
S | 694 | A694S | GcC | TcT | 1 | 7 | AY.43 | 0.000004 |
S | 694 | A694V | gCc | gTc | 7 | 7 | B.1.177.33 | 0.011513 |
S | 694 | A694V | gCc | gTc | 6 | 6 | AY.102 | 0.000159 |
S | 694 | A694A | gcC | gcT | 6 | 6 | AY.102 | 0.000159 |
S | 694 | A694A | gcC | gcT | 6 | 6 | AY.61 | 0.000629 |
S | 694 | A694del | GCC | --- | 6 | 6 | B.1 | 0.000055 |
S | 694 | A694A | gcC | gcT | 5 | 6 | B.1.2 | 0.000044 |
S | 694 | A694A | gcC | gcA | 1 | 6 | B.1.2 | 0.000009 |
S | 694 | A694V | gCc | gTc | 5 | 5 | AY.13 | 0.000805 |
S | 694 | A694A | gcC | gcT | 5 | 5 | AY.26 | 0.000142 |
S | 694 | A694A | gcC | gcT | 3 | 5 | AY.39 | 0.000074 |
S | 694 | A694A | gcC | gcA | 2 | 5 | AY.39 | 0.000049 |
S | 694 | A694A | gcC | gcT | 4 | 5 | B.1.1.519 | 0.000159 |
S | 694 | A694A | gcC | gcA | 1 | 5 | B.1.1.519 | 0.00004 |
S | 694 | A694V | gCc | gTc | 5 | 5 | B.1.147 | 0.003779 |
S | 694 | A694V | gCc | gTc | 5 | 5 | B.1.177 | 0.000066 |
S | 694 | A694V | gCc | gTc | 4 | 4 | AY.117 | 0.000338 |
S | 694 | A694V | gCc | gTc | 4 | 4 | AY.20 | 0.000155 |
S | 694 | A694A | gcC | gcA | 3 | 4 | AY.20 | 0.000117 |
S | 694 | A694A | gcC | gcT | 1 | 4 | AY.20 | 0.000039 |
S | 694 | A694V | gCc | gTc | 4 | 4 | AY.23 | 0.000279 |
S | 694 | A694V | gCc | gTc | 4 | 4 | AY.26 | 0.000113 |
S | 694 | A694T | Gcc | Acc | 4 | 4 | AY.4 | 0.000006 |
S | 694 | A694V | gCc | gTc | 4 | 4 | AY.4.2 | 0.000087 |
S | 694 | A694T | Gcc | Acc | 4 | 4 | AY.43 | 0.000018 |
S | 694 | A694A | gcC | gcT | 4 | 4 | AY.47 | 0.000124 |
S | 694 | A694A | gcC | gcT | 4 | 4 | B.1.1.239 | 0.129032 |
S | 694 | A694V | gCc | gTc | 4 | 4 | B.1.1.306 | 0.001754 |
S | 694 | A694P | Gcc | Ccc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 694 | A694V | gCc | gTc | 4 | 4 | B.1.429 | 0.000094 |
S | 694 | A694A | gcC | gcT | 3 | 4 | B.1.429 | 0.000071 |
S | 694 | A694A | gcC | gcA | 1 | 4 | B.1.429 | 0.000024 |
S | 694 | A694V | gCc | gTc | 4 | 4 | B.1.617.1 | 0.000516 |
S | 694 | A694V | gCc | gTc | 4 | 4 | B.1.621 | 0.000354 |
S | 694 | A694V | gCc | gTc | 4 | 4 | P.1 | 0.000063 |
S | 694 | A694V | gCc | gTc | 4 | 4 | Q.1 | 0.000505 |
S | 694 | A694E | gCC | gAA | 3 | 3 | All | 0.000001 |
S | 694 | A694S | Gcc | Tcc | 3 | 3 | AY.100 | 0.000138 |
S | 694 | A694A | gcC | gcT | 2 | 3 | AY.103 | 0.000012 |
S | 694 | A694A | gcC | gcA | 1 | 3 | AY.103 | 0.000006 |
S | 694 | A694V | gCc | gTc | 3 | 3 | AY.119 | 0.000106 |
S | 694 | A694T | Gcc | Acc | 3 | 3 | AY.119 | 0.000106 |
S | 694 | A694A | gcC | gcT | 3 | 3 | AY.120 | 0.000112 |
S | 694 | A694A | gcC | gcT | 3 | 3 | AY.13 | 0.000483 |
S | 694 | A694V | gCc | gTc | 3 | 3 | AY.22 | 0.006276 |
S | 694 | A694del | GCC | --- | 3 | 3 | AY.25 | 0.000018 |
S | 694 | A694V | gCc | gTc | 3 | 3 | AY.34 | 0.000291 |
S | 694 | A694S | Gcc | Tcc | 3 | 3 | AY.4.5 | 0.000322 |
S | 694 | A694A | gcC | gcA | 2 | 3 | AY.42 | 0.00008 |
S | 694 | A694A | gcC | gcT | 1 | 3 | AY.42 | 0.00004 |
S | 694 | A694A | gcC | gcA | 3 | 3 | AY.46.2 | 0.001906 |
S | 694 | A694A | gcC | gcA | 2 | 3 | AY.6 | 0.000082 |
S | 694 | A694A | gcC | gcG | 1 | 3 | AY.6 | 0.000041 |
S | 694 | A694A | gcC | gcA | 3 | 3 | AY.62 | 0.001307 |
S | 694 | A694D | gCc | gAc | 3 | 3 | B.1 | 0.000027 |
S | 694 | A694S | Gcc | Tcc | 3 | 3 | B.1 | 0.000027 |
S | 694 | A694V | gCc | gTc | 3 | 3 | B.1.1.1 | 0.00098 |
S | 694 | A694A | gcC | gcA | 2 | 3 | B.1.160 | 0.000062 |
S | 694 | A694A | gcC | gcT | 1 | 3 | B.1.160 | 0.000031 |
S | 694 | A694S | Gcc | Tcc | 3 | 3 | B.1.2 | 0.000026 |
S | 694 | A694T | Gcc | Acc | 3 | 3 | B.1.2 | 0.000026 |
S | 694 | A694T | Gcc | Acc | 3 | 3 | B.1.258.17 | 0.000312 |
S | 694 | A694V | gCc | gTc | 3 | 3 | B.1.548 | 0.107143 |
S | 694 | A694S | Gcc | Tcc | 3 | 3 | B.1.8 | 0.005917 |
S | 694 | A694A | gcC | gcA | 3 | 3 | B.1.9 | 0.018519 |
S | 694 | A694del | GCC | --- | 3 | 3 | P.1 | 0.000047 |
S | 694 | A694del | GCC | --- | 3 | 3 | P.1.15 | 0.000697 |
S | 694 | A694L | GCc | CTc | 2 | 2 | 0.111111 | |
S | 694 | A694S | Gcc | Tcc | 2 | 2 | 0.111111 | |
S | 694 | A694P | Gcc | Ccc | 2 | 2 | 0.111111 | |
S | 694 | A694L | GCc | CTc | 2 | 2 | All | 0 |
S | 694 | A694S | Gcc | Tcc | 2 | 2 | AY.25 | 0.000012 |
S | 694 | A694A | gcC | gcT | 2 | 2 | AY.29 | 0.000032 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.3.1 | 0.000171 |
S | 694 | A694A | gcC | gcA | 2 | 2 | AY.34 | 0.000194 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.36 | 0.000296 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.4.2.1 | 0.000298 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.42 | 0.00008 |
S | 694 | A694del | GCC | --- | 2 | 2 | AY.43 | 0.000009 |
S | 694 | A694del | GCC | --- | 2 | 2 | AY.44 | 0.000012 |
S | 694 | A694A | gcC | gcT | 2 | 2 | AY.46.4 | 0.000329 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.5 | 0.000041 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.54 | 0.000191 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.55 | 0.001835 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.59 | 0.001059 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.75 | 0.000112 |
S | 694 | A694A | gcC | gcT | 1 | 2 | AY.9.1 | 0.000084 |
S | 694 | A694A | gcC | gcA | 1 | 2 | AY.9.1 | 0.000084 |
S | 694 | A694A | gcC | gcT | 2 | 2 | AY.98 | 0.000158 |
S | 694 | A694V | gCc | gTc | 2 | 2 | AY.98.1 | 0.000097 |
S | 694 | A694T | Gcc | Acc | 2 | 2 | AZ.2 | 0.001642 |
S | 694 | A694A | gcC | gcA | 2 | 2 | B | 0.000256 |
S | 694 | A694G | gCc | gGc | 2 | 2 | B.1 | 0.000018 |
S | 694 | A694T | Gcc | Acc | 2 | 2 | B.1.1 | 0.000036 |
S | 694 | A694G | gCc | gGc | 2 | 2 | B.1.1 | 0.000036 |
S | 694 | A694S | GCc | AGc | 1 | 2 | B.1.1 | 0.000018 |
S | 694 | A694S | Gcc | Tcc | 1 | 2 | B.1.1 | 0.000018 |
S | 694 | A694A | gcC | gcA | 1 | 2 | B.1.1.216 | 0.00089 |
S | 694 | A694A | gcC | gcT | 1 | 2 | B.1.1.216 | 0.00089 |
S | 694 | A694A | gcC | gcA | 2 | 2 | B.1.1.28 | 0.000622 |
S | 694 | A694V | gCc | gTc | 2 | 2 | B.1.1.362 | 0.011236 |
S | 694 | A694del | GCC | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 694 | A694V | gCc | gTc | 2 | 2 | B.1.177.2 | 0.009091 |
S | 694 | A694S | Gcc | Tcc | 2 | 2 | B.1.177.66 | 0.083333 |
S | 694 | A694del | GCC | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 694 | A694V | gCc | gTc | 2 | 2 | B.1.221 | 0.000142 |
S | 694 | A694V | gCc | gTc | 2 | 2 | B.1.234 | 0.000264 |
S | 694 | A694A | gcC | gcT | 2 | 2 | B.1.426 | 0.002018 |
S | 694 | A694P | Gcc | Ccc | 2 | 2 | B.1.525 | 0.000226 |
S | 694 | A694del | GCC | --- | 2 | 2 | B.1.596 | 0.000174 |
S | 694 | A694del | GCC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 694 | A694G | gCc | gGc | 2 | 2 | B.1.617.2 | 0.000008 |
S | 694 | A694del | GCC | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 694 | A694V | gCc | gTc | 2 | 2 | D.2 | 0.00015 |
S | 694 | A694T | Gcc | Acc | 2 | 2 | P.1 | 0.000032 |
S | 694 | A694A | gcC | gcT | 1 | 2 | P.1 | 0.000016 |
S | 694 | A694A | gcC | gcA | 1 | 2 | P.1 | 0.000016 |
S | 694 | A694S | Gcc | Tcc | 2 | 2 | P.1.14 | 0.000096 |
S | 694 | A694T | Gcc | Acc | 2 | 2 | P.1.15 | 0.000465 |
S | 694 | A694G | gCc | gGc | 1 | 1 | 0.055556 | |
S | 694 | A694C | GCc | TGc | 1 | 1 | 0.055556 | |
S | 694 | A694V | gCc | gTc | 1 | 1 | A.3 | 0.002096 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AE.2 | 0.058824 |
S | 694 | A694I | GCc | ATc | 1 | 1 | All | 0 |
S | 694 | A694C | GCc | TGc | 1 | 1 | All | 0 |
S | 694 | A694del2 | gCC | g-- | 1 | 1 | All | 0 |
S | 694 | A694N | GCc | AAc | 1 | 1 | All | 0 |
S | 694 | A694del | GCC | --- | 1 | 1 | AY.103 | 0.000006 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.103 | 0.000006 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.107 | 0.000466 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.111 | 0.000183 |
S | 694 | A694A | gcC | gcA | 1 | 1 | AY.113 | 0.000142 |
S | 694 | A694A | gcC | gcT | 1 | 1 | AY.116 | 0.000287 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.117 | 0.000085 |
S | 694 | A694A | gcC | gcT | 1 | 1 | AY.118 | 0.000063 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.119 | 0.000035 |
S | 694 | A694A | gcC | gcT | 1 | 1 | AY.119 | 0.000035 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.12 | 0.000316 |
S | 694 | A694A | gcC | gcT | 1 | 1 | AY.121 | 0.000135 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.16.1 | 0.00047 |
S | 694 | A694P | Gcc | Ccc | 1 | 1 | AY.20 | 0.000039 |
S | 694 | A694A | gcC | gcT | 1 | 1 | AY.23 | 0.00007 |
S | 694 | A694D | gCc | gAc | 1 | 1 | AY.25 | 0.000006 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.27 | 0.000065 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.3 | 0.00001 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.32 | 0.000532 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.35 | 0.000233 |
S | 694 | A694A | gcC | gcT | 1 | 1 | AY.39.1 | 0.00004 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.39.1 | 0.00004 |
S | 694 | A694A | gcC | gcT | 1 | 1 | AY.4.2 | 0.000022 |
S | 694 | A694A | gcC | gcA | 1 | 1 | AY.4.4 | 0.000409 |
S | 694 | A694F | GCc | TTc | 1 | 1 | AY.4.5 | 0.000107 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.4.5 | 0.000107 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.42 | 0.00004 |
S | 694 | A694E | gCC | gAA | 1 | 1 | AY.43 | 0.000004 |
S | 694 | A694I | GCc | ATc | 1 | 1 | AY.43 | 0.000004 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.44 | 0.000006 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.44 | 0.000006 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.5 | 0.000021 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.5.4 | 0.000277 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.55 | 0.000917 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.6 | 0.000041 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.61 | 0.000105 |
S | 694 | A694A | gcC | gcA | 1 | 1 | AY.67 | 0.000464 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.71 | 0.000475 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.74 | 0.000116 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.75.1 | 0.00018 |
S | 694 | A694F | GCc | TTc | 1 | 1 | AY.81 | 0.001992 |
S | 694 | A694del | GCC | --- | 1 | 1 | AY.84 | 0.000437 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.9 | 0.000068 |
S | 694 | A694N | GCc | AAc | 1 | 1 | AY.9.2 | 0.000037 |
S | 694 | A694G | gCc | gGc | 1 | 1 | AY.9.2 | 0.000037 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.9.2 | 0.000037 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.92 | 0.000287 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | AY.98 | 0.000079 |
S | 694 | A694A | gcC | gcA | 1 | 1 | AY.98.1 | 0.000048 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | AY.98.1 | 0.000048 |
S | 694 | A694del | GCC | --- | 1 | 1 | AY.99 | 0.001049 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AY.99.2 | 0.000092 |
S | 694 | A694V | gCc | gTc | 1 | 1 | AZ.2 | 0.000821 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B | 0.000128 |
S | 694 | A694del2 | gCC | g-- | 1 | 1 | B.1 | 0.000009 |
S | 694 | A694T | GcC | AcT | 1 | 1 | B.1 | 0.000009 |
S | 694 | A694E | gCC | gAA | 1 | 1 | B.1.1 | 0.000018 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.153 | 0.001095 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.164 | 0.005155 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.214 | 0.000055 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.222 | 0.000204 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.1.28 | 0.000311 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | B.1.1.306 | 0.000438 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.1.308 | 0.011765 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.1.317 | 0.000412 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.1.317 | 0.000412 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.1.318 | 0.000302 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 694 | A694A | gcC | gcA | 1 | 1 | B.1.1.369 | 0.000446 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.1.37 | 0.000193 |
S | 694 | A694del | GCC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 694 | A694D | gCc | gAc | 1 | 1 | B.1.1.39 | 0.00051 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.1.424 | 0.045455 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.1.434 | 0.000349 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.1.514 | 0.038462 |
S | 694 | A694D | gCc | gAc | 1 | 1 | B.1.1.7 | 0.000001 |
S | 694 | A694F | GCc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.112 | 0.005181 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.139 | 0.000733 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.160 | 0.000031 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | B.1.177 | 0.000013 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.177.56 | 0.000668 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.177.57 | 0.000281 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.177.60 | 0.000218 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.177.86 | 0.000183 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.219 | 0.009434 |
S | 694 | A694A | gcC | gcA | 1 | 1 | B.1.221 | 0.000071 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.240 | 0.000216 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | B.1.241 | 0.000812 |
S | 694 | A694S | GCc | AGc | 1 | 1 | B.1.241 | 0.000812 |
S | 694 | A694G | gCc | gGc | 1 | 1 | B.1.241 | 0.000812 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.243 | 0.00007 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.258 | 0.000067 |
S | 694 | A694A | gcC | gcA | 1 | 1 | B.1.258.16 | 0.001637 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.311 | 0.000275 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | B.1.311 | 0.000275 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.319 | 0.003049 |
S | 694 | A694P | GcC | CcT | 1 | 1 | B.1.351 | 0.00003 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.351 | 0.00003 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.36.8 | 0.001 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.361 | 0.001289 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.400 | 0.000429 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.438.1 | 0.000107 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.465 | 0.003802 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.509 | 0.000866 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.525 | 0.000113 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | B.1.526 | 0.000024 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.526 | 0.000024 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.575.1 | 0.002439 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.582 | 0.000491 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.1.590 | 0.004545 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.596 | 0.000087 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 694 | A694E | gCC | gAA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 694 | A694del | GCC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 694 | A694A | gcC | gcT | 1 | 1 | B.1.621 | 0.000089 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.1.623 | 0.000536 |
S | 694 | A694del | GCC | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 694 | A694del | GCC | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.3 | 0.000831 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | B.33 | 0.021277 |
S | 694 | A694V | gCc | gTc | 1 | 1 | B.58 | 0.010204 |
S | 694 | A694A | gcC | gcA | 1 | 1 | B.61 | 0.005747 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | C.16 | 0.00106 |
S | 694 | A694V | gCc | gTc | 1 | 1 | C.26 | 0.007353 |
S | 694 | A694T | Gcc | Acc | 1 | 1 | C.36 | 0.000911 |
S | 694 | A694del | GCC | --- | 1 | 1 | C.36 | 0.000911 |
S | 694 | A694del | GCC | --- | 1 | 1 | C.37 | 0.000116 |
S | 694 | A694D | gCc | gAc | 1 | 1 | D.2 | 0.000075 |
S | 694 | A694del | GCC | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 694 | A694A | gcC | gcT | 1 | 1 | P.1.14 | 0.000048 |
S | 694 | A694V | gCc | gTc | 1 | 1 | P.1.15 | 0.000232 |
S | 694 | A694A | gcC | gcT | 1 | 1 | P.1.17 | 0.000162 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | P.1.2 | 0.001156 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | P.1.7 | 0.000319 |
S | 694 | A694A | gcC | gcT | 1 | 1 | P.7 | 0.004367 |
S | 694 | A694A | gcC | gcG | 1 | 1 | Q.1 | 0.000126 |
S | 694 | A694S | Gcc | Tcc | 1 | 1 | Q.1 | 0.000126 |
S | 694 | A694A | gcC | gcT | 1 | 1 | Q.3 | 0.000145 |
S | 694 | A694V | gCc | gTc | 1 | 1 | R.1 | 0.00009 |
S | 694 | A694A | gcC | gcT | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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