CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 694

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S694A694AsyngcCgcT238222440.94206523642-23644
S694A694AsyngcCgcA23821360.057094923642-23644
S694A694AsyngcCgcG238220.00083963123642-23644
S694A694VnonsyngCcgTc180418020.99889123642-23644
S694A694VnonsyngCCgTA180420.0011086523642-23644
S694A694SnonsynGccTcc1841810.98369623642-23644
S694A694SnonsynGCcAGc18420.010869623642-23644
S694A694SnonsynGcCTcT18410.0054347823642-23644
S694A694TnonsynGccAcc73720.98630123642-23644
S694A694TnonsynGcCAcT7310.013698623642-23644
S694A694deldelGCC---3939123642-23644
S694A694GnonsyngCcgGc1818123642-23644
S694A694FnonsynGCcTTc1212123642-23644
S694A694PnonsynGccCcc1090.923642-23644
S694A694PnonsynGcCCcT1010.123642-23644
S694A694DnonsyngCcgAc77123642-23644
S694A694EnonsyngCCgAA33123642-23644
S694A694LnonsynGCcCTc22123642-23644
S694A694del2delgCCg--11123642-23644
S694A694CnonsynGCcTGc11123642-23644
S694A694NnonsynGCcAAc11123642-23644
S694A694InonsynGCcATc11123642-23644

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S694A694AgcCgcT22442382All0.000429
S694A694AgcCgcA1362382All0.000026
S694A694AgcCgcG22382All0
S694A694VgCcgTc18021804All0.000345
S694A694VgCCgTA21804All0
S694A694AgcCgcT16491649B.1.177.541
S694A694VgCcgTc437437AY.810.870518
S694A694VgCcgTc303303B.1.1.70.000271
S694A694SGccTcc181184All0.000035
S694A694SGCcAGc2184All0
S694A694SGcCTcT1184All0
S694A694VgCcgTc171171B.1.617.20.000644
S694A694AgcCgcT150150B.1.177.40.031659
S694A694VgCcgTc131131AY.250.000788
S694A694VgCcgTc128129AY.30.001273
S694A694VgCCgTA1129AY.30.00001
S694A694SGccTcc9595B.1.1.70.000085
S694A694AgcCgcT6991B.1.1.70.000062
S694A694AgcCgcA2291B.1.1.70.00002
S694A694VgCcgTc8586AY.430.000377
S694A694VgCCgTA186AY.430.000004
S694A694VgCcgTc8686AY.440.000523
S694A694TGccAcc7273All0.000014
S694A694TGcCAcT173All0
S694A694VgCcgTc7373P.1.10.023189
S694A694AgcCgcT5455AY.750.003025
S694A694AgcCgcA155AY.750.000056
S694A694AgcCgcT4444V.11
S694A694AgcCgcT4143AY.250.000247
S694A694AgcCgcA243AY.250.000012
S694A694VgCcgTc4343B.1.20.000379
S694A694delGCC---3939All0.000007
S694A694VgCcgTc3838AY.40.000059
S694A694AgcCgcT3335AY.40.000051
S694A694AgcCgcA235AY.40.000003
S694A694VgCcgTc3434AY.1030.000211
S694A694AgcCgcT2032B.1.617.20.000075
S694A694AgcCgcA1232B.1.617.20.000045
S694A694AgcCgcT3131V.21
S694A694AgcCgcA1620AY.460.001665
S694A694AgcCgcT420AY.460.000416
S694A694GgCcgGc1818All0.000003
S694A694VgCcgTc1717B.1.10.000308
S694A694AgcCgcT1717B.1.1.3110.006089
S694A694AgcCgcA815AY.440.000049
S694A694AgcCgcT715AY.440.000043
S694A694VgCcgTc1414AY.1000.000644
S694A694AgcCgcA1314AY.30.000129
S694A694AgcCgcT114AY.30.00001
S694A694TGccAcc1414B.1.617.20.000053
S694A694SGccTcc1313AY.40.00002
S694A694AgcCgcT713AY.430.000031
S694A694AgcCgcA613AY.430.000027
S694A694VgCcgTc1313B.1.1600.000405
S694A694SGccTcc1313P.10.000205
S694A694FGCcTTc1212All0.000002
S694A694VgCcgTc1212AY.390.000297
S694A694TGccAcc1111B.1.1.70.00001
S694A694PGccCcc910All0.000002
S694A694PGcCCcT110All0
S694A694AgcCgcT910B.10.000082
S694A694AgcCgcA110B.10.000009
S694A694AgcCgcT910B.1.10.000163
S694A694AgcCgcA110B.1.10.000018
S694A694AgcCgcT810B.1.1770.000105
S694A694AgcCgcA210B.1.1770.000026
S694A694VgCcgTc1010B.1.177.210.000765
S694A694VgCcgTc1010B.1.3510.000297
S694A694SGccTcc1010B.1.617.20.000038
S694A694GgCcgGc99AY.430.00004
S694A694AgcCgcA99AY.46.10.00924
S694A694VgCcgTc99B.10.000082
S694A694FGCcTTc99B.1.1770.000119
S694A694VgCcgTc99B.1.4270.000454
S694A694VgCcgTc99B.1.5260.000212
S694A694VgCcgTc88B.1.1.5190.000318
S694A694DgCcgAc77All0.000001
S694A694TGccAcc77AY.1000.000322
S694A694SGccTcc67AY.430.000027
S694A694SGcCTcT17AY.430.000004
S694A694VgCcgTc77B.1.177.330.011513
S694A694VgCcgTc66AY.1020.000159
S694A694AgcCgcT66AY.1020.000159
S694A694AgcCgcT66AY.610.000629
S694A694delGCC---66B.10.000055
S694A694AgcCgcT56B.1.20.000044
S694A694AgcCgcA16B.1.20.000009
S694A694VgCcgTc55AY.130.000805
S694A694AgcCgcT55AY.260.000142
S694A694AgcCgcT35AY.390.000074
S694A694AgcCgcA25AY.390.000049
S694A694AgcCgcT45B.1.1.5190.000159
S694A694AgcCgcA15B.1.1.5190.00004
S694A694VgCcgTc55B.1.1470.003779
S694A694VgCcgTc55B.1.1770.000066
S694A694VgCcgTc44AY.1170.000338
S694A694VgCcgTc44AY.200.000155
S694A694AgcCgcA34AY.200.000117
S694A694AgcCgcT14AY.200.000039
S694A694VgCcgTc44AY.230.000279
S694A694VgCcgTc44AY.260.000113
S694A694TGccAcc44AY.40.000006
S694A694VgCcgTc44AY.4.20.000087
S694A694TGccAcc44AY.430.000018
S694A694AgcCgcT44AY.470.000124
S694A694AgcCgcT44B.1.1.2390.129032
S694A694VgCcgTc44B.1.1.3060.001754
S694A694PGccCcc44B.1.1.70.000004
S694A694VgCcgTc44B.1.4290.000094
S694A694AgcCgcT34B.1.4290.000071
S694A694AgcCgcA14B.1.4290.000024
S694A694VgCcgTc44B.1.617.10.000516
S694A694VgCcgTc44B.1.6210.000354
S694A694VgCcgTc44P.10.000063
S694A694VgCcgTc44Q.10.000505
S694A694EgCCgAA33All0.000001
S694A694SGccTcc33AY.1000.000138
S694A694AgcCgcT23AY.1030.000012
S694A694AgcCgcA13AY.1030.000006
S694A694VgCcgTc33AY.1190.000106
S694A694TGccAcc33AY.1190.000106
S694A694AgcCgcT33AY.1200.000112
S694A694AgcCgcT33AY.130.000483
S694A694VgCcgTc33AY.220.006276
S694A694delGCC---33AY.250.000018
S694A694VgCcgTc33AY.340.000291
S694A694SGccTcc33AY.4.50.000322
S694A694AgcCgcA23AY.420.00008
S694A694AgcCgcT13AY.420.00004
S694A694AgcCgcA33AY.46.20.001906
S694A694AgcCgcA23AY.60.000082
S694A694AgcCgcG13AY.60.000041
S694A694AgcCgcA33AY.620.001307
S694A694DgCcgAc33B.10.000027
S694A694SGccTcc33B.10.000027
S694A694VgCcgTc33B.1.1.10.00098
S694A694AgcCgcA23B.1.1600.000062
S694A694AgcCgcT13B.1.1600.000031
S694A694SGccTcc33B.1.20.000026
S694A694TGccAcc33B.1.20.000026
S694A694TGccAcc33B.1.258.170.000312
S694A694VgCcgTc33B.1.5480.107143
S694A694SGccTcc33B.1.80.005917
S694A694AgcCgcA33B.1.90.018519
S694A694delGCC---33P.10.000047
S694A694delGCC---33P.1.150.000697
S694A694LGCcCTc220.111111
S694A694SGccTcc220.111111
S694A694PGccCcc220.111111
S694A694LGCcCTc22All0
S694A694SGccTcc22AY.250.000012
S694A694AgcCgcT22AY.290.000032
S694A694VgCcgTc22AY.3.10.000171
S694A694AgcCgcA22AY.340.000194
S694A694VgCcgTc22AY.360.000296
S694A694VgCcgTc22AY.4.2.10.000298
S694A694VgCcgTc22AY.420.00008
S694A694delGCC---22AY.430.000009
S694A694delGCC---22AY.440.000012
S694A694AgcCgcT22AY.46.40.000329
S694A694VgCcgTc22AY.50.000041
S694A694VgCcgTc22AY.540.000191
S694A694VgCcgTc22AY.550.001835
S694A694VgCcgTc22AY.590.001059
S694A694VgCcgTc22AY.750.000112
S694A694AgcCgcT12AY.9.10.000084
S694A694AgcCgcA12AY.9.10.000084
S694A694AgcCgcT22AY.980.000158
S694A694VgCcgTc22AY.98.10.000097
S694A694TGccAcc22AZ.20.001642
S694A694AgcCgcA22B0.000256
S694A694GgCcgGc22B.10.000018
S694A694TGccAcc22B.1.10.000036
S694A694GgCcgGc22B.1.10.000036
S694A694SGCcAGc12B.1.10.000018
S694A694SGccTcc12B.1.10.000018
S694A694AgcCgcA12B.1.1.2160.00089
S694A694AgcCgcT12B.1.1.2160.00089
S694A694AgcCgcA22B.1.1.280.000622
S694A694VgCcgTc22B.1.1.3620.011236
S694A694delGCC---22B.1.1.70.000002
S694A694VgCcgTc22B.1.177.20.009091
S694A694SGccTcc22B.1.177.660.083333
S694A694delGCC---22B.1.20.000018
S694A694VgCcgTc22B.1.2210.000142
S694A694VgCcgTc22B.1.2340.000264
S694A694AgcCgcT22B.1.4260.002018
S694A694PGccCcc22B.1.5250.000226
S694A694delGCC---22B.1.5960.000174
S694A694delGCC---22B.1.617.20.000008
S694A694GgCcgGc22B.1.617.20.000008
S694A694delGCC---22B.1.6210.000177
S694A694VgCcgTc22D.20.00015
S694A694TGccAcc22P.10.000032
S694A694AgcCgcT12P.10.000016
S694A694AgcCgcA12P.10.000016
S694A694SGccTcc22P.1.140.000096
S694A694TGccAcc22P.1.150.000465
S694A694GgCcgGc110.055556
S694A694CGCcTGc110.055556
S694A694VgCcgTc11A.30.002096
S694A694VgCcgTc11AE.20.058824
S694A694IGCcATc11All0
S694A694CGCcTGc11All0
S694A694del2gCCg--11All0
S694A694NGCcAAc11All0
S694A694delGCC---11AY.1030.000006
S694A694TGccAcc11AY.1030.000006
S694A694VgCcgTc11AY.1070.000466
S694A694VgCcgTc11AY.1110.000183
S694A694AgcCgcA11AY.1130.000142
S694A694AgcCgcT11AY.1160.000287
S694A694TGccAcc11AY.1170.000085
S694A694AgcCgcT11AY.1180.000063
S694A694SGccTcc11AY.1190.000035
S694A694AgcCgcT11AY.1190.000035
S694A694VgCcgTc11AY.120.000316
S694A694AgcCgcT11AY.1210.000135
S694A694VgCcgTc11AY.16.10.00047
S694A694PGccCcc11AY.200.000039
S694A694AgcCgcT11AY.230.00007
S694A694DgCcgAc11AY.250.000006
S694A694SGccTcc11AY.270.000065
S694A694TGccAcc11AY.30.00001
S694A694VgCcgTc11AY.320.000532
S694A694TGccAcc11AY.350.000233
S694A694AgcCgcT11AY.39.10.00004
S694A694VgCcgTc11AY.39.10.00004
S694A694AgcCgcT11AY.4.20.000022
S694A694AgcCgcA11AY.4.40.000409
S694A694FGCcTTc11AY.4.50.000107
S694A694VgCcgTc11AY.4.50.000107
S694A694TGccAcc11AY.420.00004
S694A694EgCCgAA11AY.430.000004
S694A694IGCcATc11AY.430.000004
S694A694TGccAcc11AY.440.000006
S694A694SGccTcc11AY.440.000006
S694A694SGccTcc11AY.50.000021
S694A694VgCcgTc11AY.5.40.000277
S694A694TGccAcc11AY.550.000917
S694A694SGccTcc11AY.60.000041
S694A694VgCcgTc11AY.610.000105
S694A694AgcCgcA11AY.670.000464
S694A694VgCcgTc11AY.710.000475
S694A694VgCcgTc11AY.740.000116
S694A694VgCcgTc11AY.75.10.00018
S694A694FGCcTTc11AY.810.001992
S694A694delGCC---11AY.840.000437
S694A694SGccTcc11AY.90.000068
S694A694NGCcAAc11AY.9.20.000037
S694A694GgCcgGc11AY.9.20.000037
S694A694SGccTcc11AY.9.20.000037
S694A694VgCcgTc11AY.920.000287
S694A694TGccAcc11AY.980.000079
S694A694AgcCgcA11AY.98.10.000048
S694A694SGccTcc11AY.98.10.000048
S694A694delGCC---11AY.990.001049
S694A694VgCcgTc11AY.99.20.000092
S694A694VgCcgTc11AZ.20.000821
S694A694VgCcgTc11B0.000128
S694A694del2gCCg--11B.10.000009
S694A694TGcCAcT11B.10.000009
S694A694EgCCgAA11B.1.10.000018
S694A694AgcCgcT11B.1.1.1530.001095
S694A694AgcCgcT11B.1.1.1640.005155
S694A694AgcCgcT11B.1.1.2140.000055
S694A694AgcCgcT11B.1.1.2220.000204
S694A694SGccTcc11B.1.1.280.000311
S694A694AgcCgcT11B.1.1.3060.000438
S694A694TGccAcc11B.1.1.3060.000438
S694A694VgCcgTc11B.1.1.3080.011765
S694A694VgCcgTc11B.1.1.3170.000412
S694A694SGccTcc11B.1.1.3170.000412
S694A694VgCcgTc11B.1.1.3180.000302
S694A694AgcCgcT11B.1.1.3180.000302
S694A694AgcCgcA11B.1.1.3690.000446
S694A694SGccTcc11B.1.1.370.000193
S694A694delGCC---11B.1.1.3720.000689
S694A694DgCcgAc11B.1.1.390.00051
S694A694VgCcgTc11B.1.1.4090.002833
S694A694VgCcgTc11B.1.1.4240.045455
S694A694VgCcgTc11B.1.1.4340.000349
S694A694AgcCgcT11B.1.1.4340.000349
S694A694AgcCgcT11B.1.1.5140.038462
S694A694DgCcgAc11B.1.1.70.000001
S694A694FGCcTTc11B.1.1.70.000001
S694A694VgCcgTc11B.1.1120.005181
S694A694AgcCgcT11B.1.1390.000733
S694A694SGccTcc11B.1.1600.000031
S694A694TGccAcc11B.1.1770.000013
S694A694VgCcgTc11B.1.177.560.000668
S694A694VgCcgTc11B.1.177.570.000281
S694A694VgCcgTc11B.1.177.600.000218
S694A694SGccTcc11B.1.177.860.000183
S694A694AgcCgcT11B.1.2190.009434
S694A694AgcCgcA11B.1.2210.000071
S694A694VgCcgTc11B.1.2400.000216
S694A694TGccAcc11B.1.2410.000812
S694A694SGCcAGc11B.1.2410.000812
S694A694GgCcgGc11B.1.2410.000812
S694A694AgcCgcT11B.1.2430.00007
S694A694VgCcgTc11B.1.2580.000067
S694A694AgcCgcA11B.1.258.160.001637
S694A694VgCcgTc11B.1.3110.000275
S694A694TGccAcc11B.1.3110.000275
S694A694AgcCgcT11B.1.3190.003049
S694A694PGcCCcT11B.1.3510.00003
S694A694SGccTcc11B.1.3510.00003
S694A694AgcCgcT11B.1.36.360.000602
S694A694VgCcgTc11B.1.36.80.001
S694A694VgCcgTc11B.1.3610.001289
S694A694VgCcgTc11B.1.4000.000429
S694A694VgCcgTc11B.1.438.10.000107
S694A694VgCcgTc11B.1.4650.003802
S694A694AgcCgcT11B.1.5090.000866
S694A694AgcCgcT11B.1.5250.000113
S694A694TGccAcc11B.1.5260.000024
S694A694SGccTcc11B.1.5260.000024
S694A694VgCcgTc11B.1.575.10.002439
S694A694VgCcgTc11B.1.5820.000491
S694A694SGccTcc11B.1.5900.004545
S694A694VgCcgTc11B.1.5960.000087
S694A694AgcCgcT11B.1.617.10.000129
S694A694EgCCgAA11B.1.617.20.000004
S694A694delGCC---11B.1.6200.000946
S694A694AgcCgcT11B.1.6210.000089
S694A694VgCcgTc11B.1.6230.000536
S694A694delGCC---11B.1.6270.00202
S694A694delGCC---11B.1.6380.052632
S694A694VgCcgTc11B.30.000831
S694A694SGccTcc11B.330.021277
S694A694VgCcgTc11B.580.010204
S694A694AgcCgcA11B.610.005747
S694A694TGccAcc11C.160.00106
S694A694VgCcgTc11C.260.007353
S694A694TGccAcc11C.360.000911
S694A694delGCC---11C.360.000911
S694A694delGCC---11C.370.000116
S694A694DgCcgAc11D.20.000075
S694A694delGCC---11P.1.130.000898
S694A694AgcCgcT11P.1.140.000048
S694A694VgCcgTc11P.1.150.000232
S694A694AgcCgcT11P.1.170.000162
S694A694SGccTcc11P.1.20.001156
S694A694SGccTcc11P.1.70.000319
S694A694AgcCgcT11P.70.004367
S694A694AgcCgcG11Q.10.000126
S694A694SGccTcc11Q.10.000126
S694A694AgcCgcT11Q.30.000145
S694A694VgCcgTc11R.10.00009
S694A694AgcCgcT11U.30.003861