CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 692 | I692I | syn | atC | atT | 14249 | 14159 | 0.993684 | 23636-23638 | |
S | 692 | I692I | syn | atC | atA | 14249 | 90 | 0.00631623 | 23636-23638 | |
S | 692 | I692N | nonsyn | aTc | aAc | 216 | 214 | 0.990741 | 23636-23638 | |
S | 692 | I692N | nonsyn | aTC | aAT | 216 | 2 | 0.00925926 | 23636-23638 | |
S | 692 | I692del1 | del | Atc | -tc | 82 | 80 | 0.97561 | 23636-23638 | |
S | 692 | I692del1 | del | atC | at- | 82 | 2 | 0.0243902 | 23636-23638 | |
S | 692 | I692F | nonsyn | Atc | Ttc | 75 | 75 | 1 | 23636-23638 | |
S | 692 | I692M | nonsyn | atC | atG | 51 | 51 | 1 | 23636-23638 | |
S | 692 | I692del | del | ATC | --- | 47 | 47 | 1 | 23636-23638 | |
S | 692 | I692V | nonsyn | Atc | Gtc | 43 | 43 | 1 | 23636-23638 | |
S | 692 | I692L | nonsyn | Atc | Ctc | 21 | 17 | 0.809524 | 23636-23638 | |
S | 692 | I692L | nonsyn | AtC | CtT | 21 | 2 | 0.0952381 | 23636-23638 | |
S | 692 | I692L | nonsyn | AtC | CtG | 21 | 1 | 0.047619 | 23636-23638 | |
S | 692 | I692L | nonsyn | AtC | TtG | 21 | 1 | 0.047619 | 23636-23638 | |
S | 692 | I692T | nonsyn | aTc | aCc | 14 | 13 | 0.928571 | 23636-23638 | |
S | 692 | I692T | nonsyn | aTC | aCA | 14 | 1 | 0.0714286 | 23636-23638 | |
S | 692 | I692H | nonsyn | ATC | CAT | 4 | 2 | 0.5 | 23636-23638 | |
S | 692 | I692H | nonsyn | ATc | CAc | 4 | 2 | 0.5 | 23636-23638 | |
S | 692 | I692S | nonsyn | aTc | aGc | 3 | 3 | 1 | 23636-23638 | |
S | 692 | I692del2 | del | ATc | --c | 2 | 2 | 1 | 23636-23638 | |
S | 692 | I692Y | nonsyn | ATc | TAc | 2 | 2 | 1 | 23636-23638 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 692 | I692I | atC | atT | 14159 | 14249 | All | 0.002708 |
S | 692 | I692I | atC | atA | 90 | 14249 | All | 0.000017 |
S | 692 | I692I | atC | atT | 4832 | 4837 | B.1.1.7 | 0.004326 |
S | 692 | I692I | atC | atA | 5 | 4837 | B.1.1.7 | 0.000004 |
S | 692 | I692I | atC | atT | 2648 | 2653 | AY.4 | 0.004121 |
S | 692 | I692I | atC | atA | 5 | 2653 | AY.4 | 0.000008 |
S | 692 | I692I | atC | atT | 1276 | 1276 | B.1.628 | 0.449612 |
S | 692 | I692I | atC | atT | 534 | 535 | B.1.617.2 | 0.002011 |
S | 692 | I692I | atC | atA | 1 | 535 | B.1.617.2 | 0.000004 |
S | 692 | I692I | atC | atT | 291 | 291 | B.1.1.214 | 0.016138 |
S | 692 | I692I | atC | atT | 244 | 246 | AY.43 | 0.001081 |
S | 692 | I692I | atC | atA | 2 | 246 | AY.43 | 0.000009 |
S | 692 | I692I | atC | atT | 211 | 224 | AY.44 | 0.001284 |
S | 692 | I692I | atC | atA | 13 | 224 | AY.44 | 0.000079 |
S | 692 | I692I | atC | atT | 219 | 220 | B.1 | 0.002006 |
S | 692 | I692I | atC | atA | 1 | 220 | B.1 | 0.000009 |
S | 692 | I692N | aTc | aAc | 214 | 216 | All | 0.000041 |
S | 692 | I692N | aTC | aAT | 2 | 216 | All | 0 |
S | 692 | I692I | atC | atT | 155 | 171 | B.1.2 | 0.001365 |
S | 692 | I692I | atC | atA | 16 | 171 | B.1.2 | 0.000141 |
S | 692 | I692I | atC | atT | 164 | 164 | A.2.5 | 0.081836 |
S | 692 | I692I | atC | atT | 146 | 146 | AY.105 | 0.093891 |
S | 692 | I692N | aTc | aAc | 145 | 145 | AY.4 | 0.000226 |
S | 692 | I692I | atC | atT | 142 | 142 | B.1.160.29 | 0.599156 |
S | 692 | I692I | atC | atT | 132 | 132 | AY.3 | 0.001313 |
S | 692 | I692I | atC | atT | 128 | 128 | AY.25 | 0.00077 |
S | 692 | I692I | atC | atT | 126 | 126 | B.1.177.5 | 0.156522 |
S | 692 | I692I | atC | atT | 107 | 107 | P.1 | 0.001686 |
S | 692 | I692I | atC | atT | 100 | 100 | B.1.177.86 | 0.018345 |
S | 692 | I692I | atC | atT | 98 | 98 | B.1.438.1 | 0.010512 |
S | 692 | I692I | atC | atT | 97 | 97 | AY.103 | 0.000602 |
S | 692 | I692del1 | Atc | -tc | 80 | 82 | All | 0.000015 |
S | 692 | I692del1 | atC | at- | 2 | 82 | All | 0 |
S | 692 | I692I | atC | atT | 79 | 79 | B.1.1.519 | 0.003137 |
S | 692 | I692F | Atc | Ttc | 75 | 75 | All | 0.000014 |
S | 692 | I692I | atC | atT | 75 | 75 | B.1.177 | 0.000988 |
S | 692 | I692I | atC | atT | 50 | 75 | B.1.526 | 0.001175 |
S | 692 | I692I | atC | atA | 25 | 75 | B.1.526 | 0.000588 |
S | 692 | I692I | atC | atT | 73 | 73 | B.1.351.2 | 0.022088 |
S | 692 | I692I | atC | atT | 73 | 73 | Q.1 | 0.009222 |
S | 692 | I692I | atC | atT | 71 | 71 | B.1.258.17 | 0.007382 |
S | 692 | I692del1 | Atc | -tc | 66 | 66 | B.1.1.7 | 0.000059 |
S | 692 | I692I | atC | atT | 64 | 64 | B.1.177.57 | 0.017983 |
S | 692 | I692I | atC | atT | 64 | 64 | B.1.36 | 0.009338 |
S | 692 | I692I | atC | atT | 61 | 61 | AY.39 | 0.001507 |
S | 692 | I692I | atC | atT | 54 | 54 | AY.29 | 0.000852 |
S | 692 | I692M | atC | atG | 51 | 51 | All | 0.00001 |
S | 692 | I692del | ATC | --- | 47 | 47 | All | 0.000009 |
S | 692 | I692I | atC | atT | 47 | 47 | B.1.429 | 0.001106 |
S | 692 | I692I | atC | atT | 46 | 46 | B.1.221 | 0.003268 |
S | 692 | I692V | Atc | Gtc | 43 | 43 | All | 0.000008 |
S | 692 | I692I | atC | atT | 42 | 42 | AY.5 | 0.000867 |
S | 692 | I692I | atC | atT | 41 | 41 | B.1.1 | 0.000744 |
S | 692 | I692I | atC | atT | 39 | 40 | AY.102 | 0.001034 |
S | 692 | I692I | atC | atA | 1 | 40 | AY.102 | 0.000027 |
S | 692 | I692I | atC | atT | 36 | 40 | B.1.1.28 | 0.011204 |
S | 692 | I692I | atC | atA | 4 | 40 | B.1.1.28 | 0.001245 |
S | 692 | I692I | atC | atT | 36 | 36 | B.1.1.408 | 1 |
S | 692 | I692I | atC | atT | 35 | 35 | B.1.160 | 0.001092 |
S | 692 | I692I | atC | atT | 35 | 35 | B.1.36.29 | 0.018107 |
S | 692 | I692I | atC | atT | 32 | 32 | AY.33 | 0.002137 |
S | 692 | I692I | atC | atT | 31 | 31 | AY.4.2 | 0.000672 |
S | 692 | I692I | atC | atT | 31 | 31 | B.1.516 | 0.060665 |
S | 692 | I692F | Atc | Ttc | 31 | 31 | P.1 | 0.000488 |
S | 692 | I692I | atC | atT | 30 | 30 | AY.6 | 0.001234 |
S | 692 | I692I | atC | atT | 30 | 30 | C.37 | 0.003482 |
S | 692 | I692I | atC | atT | 26 | 29 | AY.26 | 0.000736 |
S | 692 | I692I | atC | atA | 3 | 29 | AY.26 | 0.000085 |
S | 692 | I692I | atC | atT | 28 | 29 | B.1.351 | 0.000832 |
S | 692 | I692I | atC | atA | 1 | 29 | B.1.351 | 0.00003 |
S | 692 | I692I | atC | atT | 27 | 27 | AY.119 | 0.000953 |
S | 692 | I692I | atC | atT | 26 | 26 | AY.13 | 0.004185 |
S | 692 | I692I | atC | atT | 26 | 26 | B.1.427 | 0.001313 |
S | 692 | I692I | atC | atT | 25 | 25 | B.1.240 | 0.005389 |
S | 692 | I692M | atC | atG | 24 | 24 | AY.39.1 | 0.000951 |
S | 692 | I692I | atC | atT | 24 | 24 | AY.98.1 | 0.001162 |
S | 692 | I692I | atC | atT | 24 | 24 | B.1.621 | 0.002124 |
S | 692 | I692I | atC | atT | 23 | 23 | AY.117 | 0.001944 |
S | 692 | I692L | Atc | Ctc | 17 | 21 | All | 0.000003 |
S | 692 | I692L | AtC | CtT | 2 | 21 | All | 0 |
S | 692 | I692L | AtC | CtG | 1 | 21 | All | 0 |
S | 692 | I692L | AtC | TtG | 1 | 21 | All | 0 |
S | 692 | I692I | atC | atT | 21 | 21 | AY.5.3 | 0.007085 |
S | 692 | I692I | atC | atT | 21 | 21 | B.1.177.60 | 0.004587 |
S | 692 | I692I | atC | atT | 21 | 21 | B.1.243 | 0.001461 |
S | 692 | I692I | atC | atT | 20 | 20 | AY.120 | 0.000744 |
S | 692 | I692I | atC | atT | 20 | 20 | AY.61 | 0.002096 |
S | 692 | I692I | atC | atT | 20 | 20 | B.1.177.33 | 0.032895 |
S | 692 | I692I | atC | atT | 20 | 20 | P.1.14 | 0.000956 |
S | 692 | I692I | atC | atT | 19 | 19 | AY.100 | 0.000874 |
S | 692 | I692I | atC | atT | 19 | 19 | AY.85 | 0.008116 |
S | 692 | I692I | atC | atT | 19 | 19 | B.1.177.82 | 0.009069 |
S | 692 | I692I | atC | atT | 18 | 18 | B.1.596 | 0.001568 |
S | 692 | I692I | atC | atT | 17 | 17 | B.1.177.32 | 0.022942 |
S | 692 | I692I | atC | atT | 17 | 17 | B.1.637 | 0.001242 |
S | 692 | I692I | atC | atT | 16 | 16 | AY.47 | 0.000498 |
S | 692 | I692I | atC | atT | 12 | 15 | AY.20 | 0.000466 |
S | 692 | I692I | atC | atA | 3 | 15 | AY.20 | 0.000117 |
S | 692 | I692I | atC | atT | 15 | 15 | AY.73 | 0.00998 |
S | 692 | I692I | atC | atT | 15 | 15 | B.1.36.1 | 0.017104 |
S | 692 | I692T | aTc | aCc | 13 | 14 | All | 0.000002 |
S | 692 | I692T | aTC | aCA | 1 | 14 | All | 0 |
S | 692 | I692I | atC | atT | 14 | 14 | AY.14 | 0.001232 |
S | 692 | I692N | aTc | aAc | 13 | 13 | AY.4.5 | 0.001397 |
S | 692 | I692I | atC | atT | 13 | 13 | B.1.258 | 0.000865 |
S | 692 | I692V | Atc | Gtc | 12 | 12 | B.1.1.298 | 0.010345 |
S | 692 | I692I | atC | atT | 11 | 11 | AY.23 | 0.000767 |
S | 692 | I692I | atC | atT | 11 | 11 | B.1.588 | 0.010009 |
S | 692 | I692V | Atc | Gtc | 11 | 11 | P.1.15 | 0.002556 |
S | 692 | I692M | atC | atG | 10 | 10 | B.1.1.7 | 0.000009 |
S | 692 | I692I | atC | atT | 10 | 10 | B.1.568 | 0.011111 |
S | 692 | I692I | atC | atT | 9 | 9 | AV.1 | 0.045455 |
S | 692 | I692I | atC | atT | 9 | 9 | AY.118 | 0.000564 |
S | 692 | I692I | atC | atT | 9 | 9 | AY.42 | 0.000362 |
S | 692 | I692I | atC | atT | 9 | 9 | B.1.126 | 0.01148 |
S | 692 | I692I | atC | atT | 9 | 9 | B.1.325 | 0.062069 |
S | 692 | I692I | atC | atT | 9 | 9 | B.1.524 | 0.012658 |
S | 692 | I692I | atC | atT | 8 | 8 | AY.3.1 | 0.000682 |
S | 692 | I692N | aTc | aAc | 8 | 8 | AY.4.2 | 0.000174 |
S | 692 | I692I | atC | atT | 8 | 8 | AY.7.1 | 0.000902 |
S | 692 | I692F | Atc | Ttc | 8 | 8 | B.1.1.7 | 0.000007 |
S | 692 | I692I | atC | atT | 8 | 8 | B.1.177.21 | 0.000612 |
S | 692 | I692I | atC | atT | 8 | 8 | B.1.239 | 0.009768 |
S | 692 | I692I | atC | atT | 8 | 8 | B.1.575 | 0.002427 |
S | 692 | I692I | atC | atT | 8 | 8 | C.36 | 0.007286 |
S | 692 | I692I | atC | atT | 8 | 8 | P.1.13 | 0.007188 |
S | 692 | I692N | aTc | aAc | 5 | 7 | 0.277778 | |
S | 692 | I692N | aTC | aAT | 2 | 7 | 0.111111 | |
S | 692 | I692I | atC | atT | 7 | 7 | AY.110 | 0.000789 |
S | 692 | I692I | atC | atT | 7 | 7 | AY.27 | 0.000453 |
S | 692 | I692I | atC | atT | 7 | 7 | AY.46.4 | 0.001152 |
S | 692 | I692I | atC | atT | 7 | 7 | AY.75 | 0.000392 |
S | 692 | I692I | atC | atT | 7 | 7 | AY.98 | 0.000553 |
S | 692 | I692I | atC | atT | 7 | 7 | AY.99.2 | 0.000645 |
S | 692 | I692I | atC | atT | 7 | 7 | B.1.1.222 | 0.001428 |
S | 692 | I692I | atC | atT | 7 | 7 | B.1.1.318 | 0.002112 |
S | 692 | I692I | atC | atT | 7 | 7 | B.1.131 | 0.061404 |
S | 692 | I692I | atC | atT | 7 | 7 | B.1.234 | 0.000924 |
S | 692 | I692I | atC | atT | 7 | 7 | B.1.311 | 0.001922 |
S | 692 | I692I | atC | atT | 7 | 7 | B.1.396 | 0.00494 |
S | 692 | I692I | atC | atT | 7 | 7 | D.2 | 0.000525 |
S | 692 | I692I | atC | atT | 7 | 7 | P.1.15 | 0.001626 |
S | 692 | I692I | atC | atT | 7 | 7 | P.2 | 0.001306 |
S | 692 | I692I | atC | atT | 5 | 6 | AY.109 | 0.003698 |
S | 692 | I692I | atC | atA | 1 | 6 | AY.109 | 0.00074 |
S | 692 | I692I | atC | atT | 6 | 6 | AY.30 | 0.002374 |
S | 692 | I692F | Atc | Ttc | 6 | 6 | AY.39.1.1 | 0.004348 |
S | 692 | I692del | ATC | --- | 6 | 6 | AY.43 | 0.000027 |
S | 692 | I692I | atC | atT | 6 | 6 | AY.45 | 0.00073 |
S | 692 | I692del | ATC | --- | 6 | 6 | B.1 | 0.000055 |
S | 692 | I692I | atC | atT | 6 | 6 | B.1.1.25 | 0.003411 |
S | 692 | I692I | atC | atT | 6 | 6 | B.1.1.37 | 0.001157 |
S | 692 | I692I | atC | atT | 6 | 6 | B.1.177.4 | 0.001266 |
S | 692 | I692I | atC | atT | 6 | 6 | B.1.177.81 | 0.001136 |
S | 692 | I692I | atC | atT | 6 | 6 | B.1.36.27 | 0.00458 |
S | 692 | I692I | atC | atT | 6 | 6 | B.1.36.8 | 0.006 |
S | 692 | I692I | atC | atT | 6 | 6 | B.1.369 | 0.001711 |
S | 692 | I692N | aTc | aAc | 6 | 6 | B.1.617.2 | 0.000023 |
S | 692 | I692I | atC | atT | 5 | 5 | AY.12 | 0.00158 |
S | 692 | I692N | aTc | aAc | 5 | 5 | AY.120 | 0.000186 |
S | 692 | I692I | atC | atT | 5 | 5 | AY.34 | 0.000485 |
S | 692 | I692I | atC | atT | 5 | 5 | AY.37 | 0.00158 |
S | 692 | I692I | atC | atT | 5 | 5 | AY.39.1 | 0.000198 |
S | 692 | I692F | Atc | Ttc | 5 | 5 | AY.4 | 0.000008 |
S | 692 | I692L | Atc | Ctc | 5 | 5 | AY.4 | 0.000008 |
S | 692 | I692N | aTc | aAc | 5 | 5 | AY.5 | 0.000103 |
S | 692 | I692I | atC | atT | 5 | 5 | AY.84 | 0.002187 |
S | 692 | I692N | aTc | aAc | 5 | 5 | AY.9 | 0.000338 |
S | 692 | I692I | atC | atT | 5 | 5 | AY.9.2 | 0.000184 |
S | 692 | I692I | atC | atT | 5 | 5 | AZ.3 | 0.007599 |
S | 692 | I692F | Atc | Ttc | 5 | 5 | B.1 | 0.000046 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.1.170 | 0.006234 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.1.189 | 0.007564 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.160.12 | 0.032051 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.177.12 | 0.000758 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.177.7 | 0.000824 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.177.83 | 0.007407 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.214.2 | 0.002998 |
S | 692 | I692I | atC | atT | 5 | 5 | B.1.564.1 | 0.007886 |
S | 692 | I692I | atC | atT | 5 | 5 | P.1.12 | 0.00242 |
S | 692 | I692I | atC | atT | 5 | 5 | P.1.7 | 0.001596 |
S | 692 | I692I | atC | atT | 5 | 5 | Q.3 | 0.000725 |
S | 692 | I692I | atC | atT | 3 | 5 | R.1 | 0.00027 |
S | 692 | I692I | atC | atA | 2 | 5 | R.1 | 0.00018 |
S | 692 | I692H | ATC | CAT | 2 | 4 | 0.111111 | |
S | 692 | I692L | Atc | Ctc | 2 | 4 | 0.111111 | |
S | 692 | I692H | ATc | CAc | 2 | 4 | 0.111111 | |
S | 692 | I692L | AtC | CtT | 2 | 4 | 0.111111 | |
S | 692 | I692H | ATC | CAT | 2 | 4 | All | 0 |
S | 692 | I692H | ATc | CAc | 2 | 4 | All | 0 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.2 | 0.001425 |
S | 692 | I692M | atC | atG | 4 | 4 | AY.3 | 0.00004 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.36 | 0.000593 |
S | 692 | I692V | Atc | Gtc | 4 | 4 | AY.4 | 0.000006 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.4.2.1 | 0.000596 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.4.4 | 0.001637 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.46 | 0.000416 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.46.6 | 0.000289 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.48 | 0.00186 |
S | 692 | I692I | atC | atT | 4 | 4 | AY.69 | 0.000747 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.1.33 | 0.001684 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.1.348 | 0.003185 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.1.448 | 0.00813 |
S | 692 | I692del | ATC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.177.16 | 0.002658 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.236 | 0.008214 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.404 | 0.005208 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.466.2 | 0.001565 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.582 | 0.001963 |
S | 692 | I692I | atC | atT | 4 | 4 | B.1.621.1 | 0.002023 |
S | 692 | I692V | Atc | Gtc | 4 | 4 | P.1 | 0.000063 |
S | 692 | I692I | atC | atT | 4 | 4 | P.1.1 | 0.001271 |
S | 692 | I692I | atC | atT | 4 | 4 | P.1.2 | 0.004624 |
S | 692 | I692S | aTc | aGc | 3 | 3 | All | 0.000001 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.101 | 0.001471 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.113 | 0.000427 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.116 | 0.00086 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.16.1 | 0.00141 |
S | 692 | I692del | ATC | --- | 3 | 3 | AY.25 | 0.000018 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.34.1 | 0.00153 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.40 | 0.002893 |
S | 692 | I692N | aTc | aAc | 3 | 3 | AY.43 | 0.000013 |
S | 692 | I692L | Atc | Ctc | 3 | 3 | AY.6 | 0.000123 |
S | 692 | I692N | aTc | aAc | 3 | 3 | AY.6 | 0.000123 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.72 | 0.004082 |
S | 692 | I692N | aTc | aAc | 3 | 3 | AY.8 | 0.001818 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.89 | 0.014706 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.9 | 0.000203 |
S | 692 | I692I | atC | atT | 3 | 3 | AY.9.1 | 0.000251 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.1.153 | 0.003286 |
S | 692 | I692F | Atc | Ttc | 3 | 3 | B.1.1.170 | 0.003741 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.1.192 | 0.006928 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.1.311 | 0.001074 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.1.370 | 0.037975 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.1.39 | 0.001529 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.1.70 | 0.001023 |
S | 692 | I692V | Atc | Gtc | 3 | 3 | B.1.177 | 0.00004 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.177.19 | 0.004292 |
S | 692 | I692del1 | Atc | -tc | 3 | 3 | B.1.177.82 | 0.001432 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.201 | 0.017045 |
S | 692 | I692del1 | Atc | -tc | 3 | 3 | B.1.351 | 0.000089 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.361 | 0.003866 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.468 | 0.017143 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.540 | 0.029126 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.561 | 0.001191 |
S | 692 | I692M | atC | atG | 3 | 3 | B.1.617.2 | 0.000011 |
S | 692 | I692del | ATC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 692 | I692I | atC | atT | 3 | 3 | B.1.627 | 0.006061 |
S | 692 | I692I | atC | atT | 3 | 3 | B.40 | 0.001093 |
S | 692 | I692I | atC | atT | 3 | 3 | C.36.3 | 0.001702 |
S | 692 | I692del | ATC | --- | 3 | 3 | P.1 | 0.000047 |
S | 692 | I692del | ATC | --- | 3 | 3 | P.1.15 | 0.000697 |
S | 692 | I692I | atC | atT | 3 | 3 | Q.4 | 0.001364 |
S | 692 | I692I | atC | atT | 2 | 2 | 0.111111 | |
S | 692 | I692F | Atc | Ttc | 2 | 2 | 0.111111 | |
S | 692 | I692M | atC | atG | 2 | 2 | 0.111111 | |
S | 692 | I692Y | ATc | TAc | 2 | 2 | 0.111111 | |
S | 692 | I692I | atC | atT | 2 | 2 | A | 0.000774 |
S | 692 | I692del2 | ATc | --c | 2 | 2 | All | 0 |
S | 692 | I692Y | ATc | TAc | 2 | 2 | All | 0 |
S | 692 | I692I | atC | atT | 2 | 2 | AU.1 | 0.002532 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.1 | 0.000791 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.111 | 0.000366 |
S | 692 | I692T | aTc | aCc | 2 | 2 | AY.119 | 0.000071 |
S | 692 | I692T | aTc | aCc | 2 | 2 | AY.25 | 0.000012 |
S | 692 | I692M | atC | atG | 2 | 2 | AY.4.2 | 0.000043 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.4.5 | 0.000215 |
S | 692 | I692del2 | ATc | --c | 2 | 2 | AY.43 | 0.000009 |
S | 692 | I692T | aTc | aCc | 2 | 2 | AY.43 | 0.000009 |
S | 692 | I692M | atC | atG | 2 | 2 | AY.44 | 0.000012 |
S | 692 | I692F | Atc | Ttc | 2 | 2 | AY.44 | 0.000012 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.5.4 | 0.000553 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.52 | 0.001629 |
S | 692 | I692del1 | Atc | -tc | 2 | 2 | AY.52 | 0.001629 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.56 | 0.00321 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.57 | 0.001312 |
S | 692 | I692N | aTc | aAc | 2 | 2 | AY.58 | 0.001815 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.62 | 0.000871 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.7 | 0.000392 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.7.2 | 0.001119 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.74 | 0.000231 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.75.1 | 0.000361 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.82 | 0.002714 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.88 | 0.001768 |
S | 692 | I692del | ATC | --- | 2 | 2 | AY.9.2 | 0.000073 |
S | 692 | I692I | atC | atT | 2 | 2 | AY.94 | 0.000885 |
S | 692 | I692N | aTc | aAc | 2 | 2 | AY.98 | 0.000158 |
S | 692 | I692I | atC | atT | 2 | 2 | AZ.2 | 0.001642 |
S | 692 | I692T | aTc | aCc | 2 | 2 | B.1 | 0.000018 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.1 | 0.000653 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.129 | 0.018349 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.284 | 0.000215 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.306 | 0.000877 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.317 | 0.000823 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.320 | 0.036364 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.354 | 0.008772 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.368 | 0.006173 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.372 | 0.001377 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.437 | 0.020833 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.464 | 0.002946 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.526 | 0.007092 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.1.67 | 0.009132 |
S | 692 | I692T | aTc | aCc | 2 | 2 | B.1.1.7 | 0.000002 |
S | 692 | I692V | Atc | Gtc | 2 | 2 | B.1.1.7 | 0.000002 |
S | 692 | I692del1 | Atc | -tc | 2 | 2 | B.1.160 | 0.000062 |
S | 692 | I692F | Atc | Ttc | 2 | 2 | B.1.177 | 0.000026 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.177.23 | 0.006472 |
S | 692 | I692I | atC | atA | 2 | 2 | B.1.177.74 | 0.030303 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.177.75 | 0.002081 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.177.87 | 0.001456 |
S | 692 | I692del | ATC | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 692 | I692I | atC | atA | 1 | 2 | B.1.232 | 0.000537 |
S | 692 | I692I | atC | atT | 1 | 2 | B.1.232 | 0.000537 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.279 | 0.001027 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.305 | 0.004301 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.329 | 0.001215 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.349 | 0.00143 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.367 | 0.001585 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.400 | 0.000858 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.499 | 0.002101 |
S | 692 | I692I | atC | atT | 1 | 2 | B.1.525 | 0.000113 |
S | 692 | I692I | atC | atA | 1 | 2 | B.1.525 | 0.000113 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.527 | 0.007407 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.533 | 0.019231 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.590 | 0.009091 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.591 | 0.021277 |
S | 692 | I692del | ATC | --- | 2 | 2 | B.1.596 | 0.000174 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.609 | 0.000959 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.619.1 | 0.001283 |
S | 692 | I692del | ATC | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.623 | 0.001073 |
S | 692 | I692I | atC | atT | 2 | 2 | B.1.93 | 0.001867 |
S | 692 | I692I | atC | atT | 2 | 2 | N.5 | 0.003534 |
S | 692 | I692I | atC | atT | 2 | 2 | P.1.10 | 0.000539 |
S | 692 | I692I | atC | atT | 2 | 2 | Q.8 | 0.00033 |
S | 692 | I692I | atC | atT | 1 | 1 | A.17 | 0.090909 |
S | 692 | I692I | atC | atT | 1 | 1 | A.2.4 | 0.003367 |
S | 692 | I692I | atC | atT | 1 | 1 | A.23.1 | 0.000704 |
S | 692 | I692I | atC | atT | 1 | 1 | A.5 | 0.001923 |
S | 692 | I692I | atC | atT | 1 | 1 | AD.2 | 0.000219 |
S | 692 | I692I | atC | atT | 1 | 1 | AE.8 | 0.000489 |
S | 692 | I692L | Atc | Ctc | 1 | 1 | AY.102 | 0.000027 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.103 | 0.000006 |
S | 692 | I692V | Atc | Gtc | 1 | 1 | AY.103 | 0.000006 |
S | 692 | I692del | ATC | --- | 1 | 1 | AY.103 | 0.000006 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.106 | 0.000335 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.111 | 0.000183 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.115 | 0.005208 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.116.1 | 0.000311 |
S | 692 | I692M | atC | atG | 1 | 1 | AY.117 | 0.000085 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | AY.120 | 0.000037 |
S | 692 | I692L | Atc | Ctc | 1 | 1 | AY.120.1 | 0.000321 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.121 | 0.000135 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.16 | 0.00038 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.17 | 0.008197 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.23.1 | 0.000417 |
S | 692 | I692V | Atc | Gtc | 1 | 1 | AY.25 | 0.000006 |
S | 692 | I692L | Atc | Ctc | 1 | 1 | AY.25 | 0.000006 |
S | 692 | I692V | Atc | Gtc | 1 | 1 | AY.27 | 0.000065 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.29.1 | 0.000221 |
S | 692 | I692del | ATC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | AY.3 | 0.00001 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.3 | 0.00001 |
S | 692 | I692del1 | Atc | -tc | 1 | 1 | AY.43 | 0.000004 |
S | 692 | I692L | AtC | CtG | 1 | 1 | AY.43 | 0.000004 |
S | 692 | I692S | aTc | aGc | 1 | 1 | AY.43 | 0.000004 |
S | 692 | I692V | Atc | Gtc | 1 | 1 | AY.43 | 0.000004 |
S | 692 | I692del | ATC | --- | 1 | 1 | AY.44 | 0.000006 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.46.2 | 0.000635 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.46.5 | 0.000198 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.5.1 | 0.003759 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.5.2 | 0.002463 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.54 | 0.000095 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.55 | 0.000917 |
S | 692 | I692L | Atc | Ctc | 1 | 1 | AY.55 | 0.000917 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.59 | 0.00053 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.67 | 0.000464 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.7 | 0.000196 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.70 | 0.000209 |
S | 692 | I692del | ATC | --- | 1 | 1 | AY.84 | 0.000437 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.87 | 0.000833 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.87 | 0.000833 |
S | 692 | I692N | aTc | aAc | 1 | 1 | AY.9.1 | 0.000084 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.91 | 0.00073 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.92 | 0.000287 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.99 | 0.001049 |
S | 692 | I692del | ATC | --- | 1 | 1 | AY.99 | 0.001049 |
S | 692 | I692I | atC | atT | 1 | 1 | AY.99.1 | 0.001553 |
S | 692 | I692I | atC | atT | 1 | 1 | B | 0.000128 |
S | 692 | I692del1 | atC | at- | 1 | 1 | B.1 | 0.000009 |
S | 692 | I692L | Atc | Ctc | 1 | 1 | B.1.1 | 0.000018 |
S | 692 | I692T | aTC | aCA | 1 | 1 | B.1.1 | 0.000018 |
S | 692 | I692S | aTc | aGc | 1 | 1 | B.1.1 | 0.000018 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.10 | 0.001115 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.117 | 0.009709 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.121 | 0.002427 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.163 | 0.007634 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.172 | 0.018182 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.174 | 0.003378 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.209 | 0.008929 |
S | 692 | I692I | atC | atA | 1 | 1 | B.1.1.220 | 0.001859 |
S | 692 | I692M | atC | atG | 1 | 1 | B.1.1.222 | 0.000204 |
S | 692 | I692T | aTc | aCc | 1 | 1 | B.1.1.225 | 0.007194 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.232 | 0.001815 |
S | 692 | I692T | aTc | aCc | 1 | 1 | B.1.1.277 | 0.000759 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.291 | 0.000742 |
S | 692 | I692del | ATC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.373 | 0.02381 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.385 | 0.004464 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.397 | 0.002252 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.4 | 0.002976 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.417 | 0.002703 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.43 | 0.014925 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.432 | 0.001266 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.433 | 0.001425 |
S | 692 | I692V | Atc | Gtc | 1 | 1 | B.1.1.433 | 0.001425 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.463 | 0.0625 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.47 | 0.005348 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.52 | 0.012195 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.61 | 0.008772 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.63 | 0.000386 |
S | 692 | I692N | aTc | aAc | 1 | 1 | B.1.1.7 | 0.000001 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.1.8 | 0.003584 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.117 | 0.0125 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.118 | 0.006711 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.134 | 0.005464 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.158 | 0.02381 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.160.28 | 0.002924 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.18 | 0.00116 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.43 | 0.001477 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.50 | 0.004695 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.55 | 0.002331 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.56 | 0.000668 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.58 | 0.001332 |
S | 692 | I692del1 | Atc | -tc | 1 | 1 | B.1.177.6 | 0.000977 |
S | 692 | I692V | Atc | Gtc | 1 | 1 | B.1.177.60 | 0.000218 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.65 | 0.000665 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.177.8 | 0.000752 |
S | 692 | I692L | Atc | Ctc | 1 | 1 | B.1.2 | 0.000009 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.2 | 0.000009 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.206 | 0.000816 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.23 | 0.006061 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.237 | 0.004975 |
S | 692 | I692M | atC | atG | 1 | 1 | B.1.241 | 0.000812 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.241 | 0.000812 |
S | 692 | I692L | AtC | TtG | 1 | 1 | B.1.241 | 0.000812 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.242 | 0.018868 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.258.5 | 0.008772 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.258.7 | 0.001912 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.279 | 0.000514 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.320 | 0.001245 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.324 | 0.001605 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.346 | 0.001311 |
S | 692 | I692L | Atc | Ctc | 1 | 1 | B.1.351 | 0.00003 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.351 | 0.00003 |
S | 692 | I692del1 | Atc | -tc | 1 | 1 | B.1.36.1 | 0.00114 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.36.22 | 0.001208 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.36.37 | 0.002778 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.360 | 0.012658 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.375 | 0.00082 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.381 | 0.007812 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.389 | 0.001002 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.399 | 0.001934 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.416 | 0.001269 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.429 | 0.000024 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.456 | 0.003268 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.462 | 0.007246 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.470 | 0.001404 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.509 | 0.000866 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.517 | 0.000427 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.551 | 0.00129 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.565 | 0.00081 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.587 | 0.001898 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.595 | 0.000261 |
S | 692 | I692T | aTc | aCc | 1 | 1 | B.1.596 | 0.000087 |
S | 692 | I692I | atC | atA | 1 | 1 | B.1.603 | 0.010638 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.612 | 0.002653 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 692 | I692S | aTc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 692 | I692V | Atc | Gtc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 692 | I692del | ATC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 692 | I692del | ATC | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | B.1.637 | 0.000073 |
S | 692 | I692del | ATC | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 692 | I692I | atC | atT | 1 | 1 | B.1.70 | 0.02439 |
S | 692 | I692I | atC | atT | 1 | 1 | B.28 | 0.003279 |
S | 692 | I692I | atC | atT | 1 | 1 | B.52 | 0.010101 |
S | 692 | I692I | atC | atT | 1 | 1 | B.6 | 0.00091 |
S | 692 | I692I | atC | atT | 1 | 1 | B.6.6 | 0.000889 |
S | 692 | I692I | atC | atT | 1 | 1 | C.1 | 0.002392 |
S | 692 | I692I | atC | atT | 1 | 1 | C.1.1 | 0.076923 |
S | 692 | I692I | atC | atT | 1 | 1 | C.14 | 0.004329 |
S | 692 | I692del1 | atC | at- | 1 | 1 | C.36 | 0.000911 |
S | 692 | I692I | atC | atT | 1 | 1 | C.36.3.1 | 0.002717 |
S | 692 | I692del | ATC | --- | 1 | 1 | C.37 | 0.000116 |
S | 692 | I692I | atC | atT | 1 | 1 | C.37.1 | 0.002618 |
S | 692 | I692M | atC | atG | 1 | 1 | D.2 | 0.000075 |
S | 692 | I692I | atC | atA | 1 | 1 | N.3 | 0.005814 |
S | 692 | I692del | ATC | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 692 | I692F | Atc | Ttc | 1 | 1 | P.1.15 | 0.000232 |
S | 692 | I692I | atC | atT | 1 | 1 | P.1.17 | 0.000162 |
S | 692 | I692I | atC | atT | 1 | 1 | P.1.9 | 0.004808 |
S | 692 | I692del1 | Atc | -tc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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