CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 691

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	691	S691S		syn	tcC	tcT	9843	9476	0.962715	23633-23635
S	691	S691S		syn	tcC	tcG	9843	292	0.0296658	23633-23635
S	691	S691S		syn	tcC	tcA	9843	73	0.00741644	23633-23635
S	691	S691S		syn	TCC	AGT	9843	1	0.000101595	23633-23635
S	691	S691S		syn	TCc	AGc	9843	1	0.000101595	23633-23635
S	691	S691F		nonsyn	tCc	tTc	1436	1436	1	23633-23635
S	691	S691P		nonsyn	Tcc	Ccc	376	376	1	23633-23635
S	691	S691A		nonsyn	Tcc	Gcc	263	262	0.996198	23633-23635
S	691	S691A		nonsyn	TcC	GcA	263	1	0.00380228	23633-23635
S	691	S691Y		nonsyn	tCc	tAc	57	56	0.982456	23633-23635
S	691	S691Y		nonsyn	tCC	tAT	57	1	0.0175439	23633-23635
S	691	S691del		del	TCC	---	47	47	1	23633-23635
S	691	S691T		nonsyn	Tcc	Acc	18	18	1	23633-23635
S	691	S691C		nonsyn	tCc	tGc	7	7	1	23633-23635
S	691	S691del1		del	Tcc	-cc	6	2	0.333333	23633-23635
S	691	S691del1		del	tcC	tc-	6	2	0.333333	23633-23635
S	691	S691del1		del	tCc	t-c	6	1	0.166667	23633-23635
S	691	S691del1		del	TCC	-NN	6	1	0.166667	23633-23635
S	691	S691H		nonsyn	TCc	CAc	2	2	1	23633-23635
S	691	S691G		nonsyn	TCC	GGA	2	1	0.5	23633-23635
S	691	S691L		nonsyn	TCC	CTT	2	1	0.5	23633-23635
S	691	S691L		nonsyn	TCc	CTc	2	1	0.5	23633-23635
S	691	S691G		nonsyn	TCc	GGc	2	1	0.5	23633-23635
S	691	S691W		nonsyn	tCC	tGG	1	1	1	23633-23635
S	691	S691del2		del	tCC	t--	1	1	1	23633-23635
S	691	S691X		nonsyn	tCC	tGA	1	1	1	23633-23635

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	691	S691S	tcC	tcT	9476	9843	All	0.001812
S	691	S691S	tcC	tcG	292	9843	All	0.000056
S	691	S691S	tcC	tcA	73	9843	All	0.000014
S	691	S691S	TCc	AGc	1	9843	All	0
S	691	S691S	TCC	AGT	1	9843	All	0
S	691	S691S	tcC	tcT	2366	2616	B.1.1.7	0.002118
S	691	S691S	tcC	tcG	244	2616	B.1.1.7	0.000218
S	691	S691S	tcC	tcA	6	2616	B.1.1.7	0.000005
S	691	S691F	tCc	tTc	1436	1436	All	0.000275
S	691	S691S	tcC	tcT	1071	1074	AY.44	0.006519
S	691	S691S	tcC	tcG	2	1074	AY.44	0.000012
S	691	S691S	tcC	tcA	1	1074	AY.44	0.000006
S	691	S691S	tcC	tcT	734	742	AY.4	0.001142
S	691	S691S	tcC	tcA	4	742	AY.4	0.000006
S	691	S691S	tcC	tcG	4	742	AY.4	0.000006
S	691	S691S	tcC	tcT	534	535	AY.25	0.003212
S	691	S691S	tcC	tcA	1	535	AY.25	0.000006
S	691	S691S	tcC	tcT	376	386	B.1.617.2	0.001416
S	691	S691S	tcC	tcG	6	386	B.1.617.2	0.000023
S	691	S691S	tcC	tcA	4	386	B.1.617.2	0.000015
S	691	S691P	Tcc	Ccc	376	376	All	0.000072
S	691	S691S	tcC	tcT	329	330	B.1.1.519	0.013065
S	691	S691S	tcC	tcG	1	330	B.1.1.519	0.00004
S	691	S691S	tcC	tcT	279	279	AM.4	0.996429
S	691	S691A	Tcc	Gcc	262	263	All	0.00005
S	691	S691A	TcC	GcA	1	263	All	0
S	691	S691F	tCc	tTc	251	251	AY.44	0.001528
S	691	S691S	tcC	tcT	210	213	B.1.2	0.001849
S	691	S691S	tcC	tcA	3	213	B.1.2	0.000026
S	691	S691F	tCc	tTc	200	200	B.1.1.7	0.000179
S	691	S691S	tcC	tcT	197	198	AY.47	0.006128
S	691	S691S	tcC	tcA	1	198	AY.47	0.000031
S	691	S691S	tcC	tcT	181	185	AY.43	0.000802
S	691	S691S	tcC	tcG	3	185	AY.43	0.000013
S	691	S691S	tcC	tcA	1	185	AY.43	0.000004
S	691	S691S	tcC	tcT	150	156	B.1	0.001374
S	691	S691S	tcC	tcA	4	156	B.1	0.000037
S	691	S691S	tcC	tcG	2	156	B.1	0.000018
S	691	S691S	tcC	tcT	139	151	B.1.351	0.004132
S	691	S691S	tcC	tcG	12	151	B.1.351	0.000357
S	691	S691A	Tcc	Gcc	142	142	AY.25	0.000854
S	691	S691S	tcC	tcT	136	136	B.1.564	0.057922
S	691	S691S	tcC	tcT	132	135	AY.103	0.00082
S	691	S691S	tcC	tcG	2	135	AY.103	0.000012
S	691	S691S	tcC	tcA	1	135	AY.103	0.000006
S	691	S691S	tcC	tcT	117	117	AY.98	0.009242
S	691	S691F	tCc	tTc	116	116	AY.4	0.000181
S	691	S691S	tcC	tcT	97	103	B.1.1	0.00176
S	691	S691S	tcC	tcA	4	103	B.1.1	0.000073
S	691	S691S	TCc	AGc	1	103	B.1.1	0.000018
S	691	S691S	TCC	AGT	1	103	B.1.1	0.000018
S	691	S691F	tCc	tTc	96	96	B.1.637	0.007015
S	691	S691P	Tcc	Ccc	95	95	B.1.1.7	0.000085
S	691	S691S	tcC	tcT	87	88	AY.102	0.002307
S	691	S691S	tcC	tcA	1	88	AY.102	0.000027
S	691	S691S	tcC	tcT	87	88	AY.3	0.000865
S	691	S691S	tcC	tcA	1	88	AY.3	0.00001
S	691	S691S	tcC	tcT	84	88	B.1.177.81	0.015903
S	691	S691S	tcC	tcA	4	88	B.1.177.81	0.000757
S	691	S691S	tcC	tcT	84	85	B.1.177	0.001106
S	691	S691S	tcC	tcA	1	85	B.1.177	0.000013
S	691	S691A	Tcc	Gcc	83	83	B.1.1.234	1
S	691	S691F	tCc	tTc	83	83	B.1.617.2	0.000313
S	691	S691S	tcC	tcT	82	82	B.1.159	1
S	691	S691S	tcC	tcT	79	79	P.1	0.001245
S	691	S691F	tCc	tTc	75	75	AY.5	0.001549
S	691	S691S	tcC	tcT	72	73	B.1.1.222	0.014688
S	691	S691S	tcC	tcG	1	73	B.1.1.222	0.000204
S	691	S691P	Tcc	Ccc	67	67	B.1.1.157	0.061187
S	691	S691S	tcC	tcT	61	62	D.2	0.004578
S	691	S691S	tcC	tcG	1	62	D.2	0.000075
S	691	S691F	tCc	tTc	59	59	AY.103	0.000366
S	691	S691Y	tCc	tAc	56	57	All	0.000011
S	691	S691Y	tCC	tAT	1	57	All	0
S	691	S691S	tcC	tcT	56	56	AY.23	0.003906
S	691	S691S	tcC	tcT	52	54	B.1.243	0.003618
S	691	S691S	tcC	tcA	2	54	B.1.243	0.000139
S	691	S691S	tcC	tcT	52	52	AY.46.4	0.008554
S	691	S691S	tcC	tcT	50	52	B.1.429	0.001176
S	691	S691S	tcC	tcG	2	52	B.1.429	0.000047
S	691	S691S	tcC	tcT	49	49	B.1.427	0.002474
S	691	S691del	TCC	---	47	47	All	0.000009
S	691	S691S	tcC	tcT	44	44	P.1.15	0.010223
S	691	S691F	tCc	tTc	42	42	AY.43	0.000186
S	691	S691S	tcC	tcT	42	42	B.1.234	0.005542
S	691	S691S	tcC	tcT	40	40	AY.100	0.00184
S	691	S691P	Tcc	Ccc	40	40	P.1	0.00063
S	691	S691S	tcC	tcT	39	39	AY.16	0.014806
S	691	S691F	tCc	tTc	37	37	AY.3	0.000368
S	691	S691S	tcC	tcT	34	34	AY.20	0.001321
S	691	S691S	tcC	tcT	34	34	B.1.619	0.029617
S	691	S691F	tCc	tTc	31	31	B.1.2	0.000273
S	691	S691S	tcC	tcT	30	30	AM.3	1
S	691	S691S	tcC	tcT	30	30	AY.4.2	0.000651
S	691	S691S	tcC	tcT	29	29	B.1.1.428	0.273585
S	691	S691S	tcC	tcT	28	28	B.1.526	0.000658
S	691	S691S	tcC	tcT	26	26	B.1.177.35	0.017968
S	691	S691S	tcC	tcT	26	26	B.1.177.42	0.023256
S	691	S691P	Tcc	Ccc	26	26	P.1.1	0.008259
S	691	S691S	tcC	tcT	24	25	AY.5	0.000496
S	691	S691S	tcC	tcA	1	25	AY.5	0.000021
S	691	S691F	tCc	tTc	24	24	B.1.177	0.000316
S	691	S691S	tcC	tcT	23	23	B.1.618	0.092742
S	691	S691S	tcC	tcT	22	22	AY.26	0.000623
S	691	S691S	tcC	tcT	21	22	AY.39	0.000519
S	691	S691S	tcC	tcA	1	22	AY.39	0.000025
S	691	S691S	tcC	tcT	21	21	B.1.258	0.001397
S	691	S691S	tcC	tcT	21	21	P.1.12	0.010165
S	691	S691F	tCc	tTc	20	20	AY.25	0.00012
S	691	S691S	tcC	tcT	18	20	AY.29	0.000284
S	691	S691S	tcC	tcA	2	20	AY.29	0.000032
S	691	S691P	Tcc	Ccc	20	20	AY.4	0.000031
S	691	S691F	tCc	tTc	20	20	B.1	0.000183
S	691	S691S	tcC	tcT	20	20	B.1.177.4	0.004221
S	691	S691S	tcC	tcT	20	20	B.1.221	0.001421
S	691	S691S	tcC	tcT	19	19	B.1.637	0.001388
S	691	S691T	Tcc	Acc	18	18	All	0.000003
S	691	S691S	tcC	tcT	18	18	AY.45	0.00219
S	691	S691F	tCc	tTc	18	18	AY.68	0.004927
S	691	S691S	tcC	tcT	18	18	B.1.177.15	0.011356
S	691	S691S	tcC	tcT	15	17	AY.121	0.00203
S	691	S691S	tcC	tcG	2	17	AY.121	0.000271
S	691	S691F	tCc	tTc	17	17	AY.47	0.000529
S	691	S691S	tcC	tcT	16	17	B.1.160	0.000499
S	691	S691S	tcC	tcA	1	17	B.1.160	0.000031
S	691	S691S	tcC	tcT	17	17	B.1.311	0.004668
S	691	S691F	tCc	tTc	17	17	P.1	0.000268
S	691	S691F	tCc	tTc	17	17	P.1.17	0.00275
S	691	S691F	tCc	tTc	16	16	AY.33	0.001068
S	691	S691P	Tcc	Ccc	15	15	AY.39.1	0.000594
S	691	S691P	Tcc	Ccc	15	15	AY.43	0.000066
S	691	S691F	tCc	tTc	15	15	D.2	0.001126
S	691	S691S	tcC	tcT	14	14	AY.119	0.000494
S	691	S691S	tcC	tcT	12	14	AY.3.1	0.001023
S	691	S691S	tcC	tcA	2	14	AY.3.1	0.000171
S	691	S691S	tcC	tcT	14	14	AY.5.4	0.003874
S	691	S691S	tcC	tcA	9	14	AY.6	0.00037
S	691	S691S	tcC	tcT	5	14	AY.6	0.000206
S	691	S691F	tCc	tTc	14	14	B.1.1	0.000254
S	691	S691S	tcC	tcT	14	14	B.1.240	0.003018
S	691	S691S	tcC	tcT	13	13	AY.120	0.000483
S	691	S691S	tcC	tcT	12	13	B.1.1.216	0.010686
S	691	S691S	tcC	tcG	1	13	B.1.1.216	0.00089
S	691	S691S	tcC	tcT	13	13	B.1.210	0.027719
S	691	S691F	tCc	tTc	13	13	B.1.221	0.000923
S	691	S691Y	tCc	tAc	11	12	AY.4	0.000017
S	691	S691Y	tCC	tAT	1	12	AY.4	0.000002
S	691	S691S	tcC	tcT	12	12	AY.54	0.001144
S	691	S691S	tcC	tcT	12	12	B.1.561	0.004764
S	691	S691S	tcC	tcT	12	12	P.1.17	0.001941
S	691	S691S	tcC	tcT	11	11	AY.46.6	0.000794
S	691	S691F	tCc	tTc	11	11	AY.75	0.000616
S	691	S691S	tcC	tcT	11	11	B.1.1.25	0.006254
S	691	S691P	Tcc	Ccc	11	11	B.1.617.2	0.000041
S	691	S691A	Tcc	Gcc	11	11	B.1.617.2	0.000041
S	691	S691S	tcC	tcT	11	11	C.16	0.011665
S	691	S691F	tCc	tTc	10	10	AY.20	0.000389
S	691	S691S	tcC	tcT	10	10	AY.37	0.003161
S	691	S691S	tcC	tcA	9	10	B.1.1.326	0.015845
S	691	S691S	tcC	tcT	1	10	B.1.1.326	0.001761
S	691	S691S	tcC	tcT	10	10	B.1.177.86	0.001835
S	691	S691S	tcC	tcT	9	10	B.1.36	0.001313
S	691	S691S	tcC	tcA	1	10	B.1.36	0.000146
S	691	S691S	tcC	tcT	10	10	B.1.565	0.008104
S	691	S691S	tcC	tcT	10	10	P.1.10	0.002695
S	691	S691S	tcC	tcT	10	10	P.1.14	0.000478
S	691	S691S	tcC	tcT	10	10	P.1.16	0.003741
S	691	S691S	tcC	tcT	9	9	AY.117	0.000761
S	691	S691S	tcC	tcT	7	9	AY.12	0.002212
S	691	S691S	tcC	tcG	2	9	AY.12	0.000632
S	691	S691S	tcC	tcT	8	9	AY.69	0.001493
S	691	S691S	tcC	tcA	1	9	AY.69	0.000187
S	691	S691S	tcC	tcT	9	9	AY.99.2	0.000829
S	691	S691S	tcC	tcT	9	9	B.1.110.3	0.006466
S	691	S691S	tcC	tcT	9	9	B.1.596	0.000784
S	691	S691S	tcC	tcT	9	9	C.36.3	0.005105
S	691	S691S	tcC	tcT	9	9	C.37	0.001045
S	691	S691S	tcC	tcT	8	8	AY.113	0.001139
S	691	S691F	tCc	tTc	8	8	AY.120	0.000297
S	691	S691S	tcC	tcT	7	8	AY.42	0.000282
S	691	S691S	tcC	tcA	1	8	AY.42	0.00004
S	691	S691S	tcC	tcT	8	8	AY.9.1	0.00067
S	691	S691S	tcC	tcT	8	8	AY.9.2	0.000294
S	691	S691P	Tcc	Ccc	8	8	B.1	0.000073
S	691	S691S	tcC	tcT	8	8	B.1.1.171	0.029412
S	691	S691S	tcC	tcT	8	8	B.1.177.27	0.075472
S	691	S691F	tCc	tTc	8	8	P.1.14	0.000382
S	691	S691S	tcC	tcT	8	8	P.2	0.001493
S	691	S691S	tcC	tcT	8	8	R.1	0.00072
S	691	S691C	tCc	tGc	7	7	All	0.000001
S	691	S691F	tCc	tTc	7	7	AY.113	0.000997
S	691	S691S	tcC	tcT	7	7	AY.116	0.002007
S	691	S691P	Tcc	Ccc	7	7	AY.25	0.000042
S	691	S691F	tCc	tTc	7	7	AY.29	0.00011
S	691	S691P	Tcc	Ccc	7	7	AY.44	0.000043
S	691	S691S	tcC	tcT	7	7	AY.61	0.000733
S	691	S691Y	tCc	tAc	7	7	B.1.1.7	0.000006
S	691	S691F	tCc	tTc	7	7	B.1.526	0.000165
S	691	S691S	tcC	tcT	6	7	B.1.621	0.000531
S	691	S691S	tcC	tcA	1	7	B.1.621	0.000089
S	691	S691del1	Tcc	-cc	2	6	All	0
S	691	S691del1	tcC	tc-	2	6	All	0
S	691	S691del1	tCc	t-c	1	6	All	0
S	691	S691del1	TCC	-NN	1	6	All	0
S	691	S691S	tcC	tcT	6	6	AY.118	0.000376
S	691	S691F	tCc	tTc	6	6	AY.26	0.00017
S	691	S691A	Tcc	Gcc	6	6	AY.3	0.00006
S	691	S691S	tcC	tcT	6	6	AY.34	0.000582
S	691	S691F	tCc	tTc	6	6	AY.34	0.000582
S	691	S691S	tcC	tcT	6	6	AY.4.5	0.000645
S	691	S691del	TCC	---	6	6	AY.43	0.000027
S	691	S691S	tcC	tcT	6	6	AY.71	0.00285
S	691	S691S	tcC	tcT	6	6	AY.77	0.006764
S	691	S691P	Tcc	Ccc	6	6	AY.99.2	0.000553
S	691	S691del	TCC	---	6	6	B.1	0.000055
S	691	S691S	tcC	tcT	6	6	B.1.1.214	0.000333
S	691	S691S	tcC	tcT	4	6	B.1.1.28	0.001245
S	691	S691S	tcC	tcG	2	6	B.1.1.28	0.000622
S	691	S691S	tcC	tcT	6	6	B.1.499.1	0.666667
S	691	S691P	Tcc	Ccc	6	6	C.37	0.000696
S	691	S691S	tcC	tcT	6	6	N.5	0.010601
S	691	S691S	tcC	tcT	5	5	AY.110	0.000563
S	691	S691S	tcC	tcT	5	5	AY.24	0.002155
S	691	S691S	tcC	tcT	5	5	AY.33	0.000334
S	691	S691S	tcC	tcT	5	5	AY.36	0.000741
S	691	S691F	tCc	tTc	5	5	AY.39	0.000124
S	691	S691F	tCc	tTc	5	5	AY.4.2	0.000108
S	691	S691S	tcC	tcT	5	5	AY.46	0.00052
S	691	S691F	tCc	tTc	5	5	AY.54	0.000477
S	691	S691S	tcC	tcT	5	5	AY.74	0.000578
S	691	S691S	tcC	tcT	5	5	AY.75.1	0.000902
S	691	S691F	tCc	tTc	5	5	B.1.1.222	0.00102
S	691	S691S	tcC	tcT	5	5	B.1.1.306	0.002192
S	691	S691S	tcC	tcT	5	5	B.1.1.403	0.128205
S	691	S691F	tCc	tTc	5	5	B.1.1.519	0.000199
S	691	S691A	Tcc	Gcc	5	5	B.1.1.7	0.000004
S	691	S691T	Tcc	Acc	5	5	B.1.1.7	0.000004
S	691	S691S	tcC	tcT	5	5	B.1.1.70	0.001705
S	691	S691F	tCc	tTc	5	5	B.1.128	0.003177
S	691	S691S	tcC	tcT	5	5	B.1.177.82	0.002387
S	691	S691P	Tcc	Ccc	5	5	B.1.258	0.000333
S	691	S691F	tCc	tTc	5	5	B.1.351	0.000149
S	691	S691S	tcC	tcT	5	5	B.1.466.2	0.001956
S	691	S691F	tCc	tTc	5	5	B.1.596	0.000436
S	691	S691S	tcC	tcT	4	4	AY.1	0.001583
S	691	S691F	tCc	tTc	4	4	AY.100	0.000184
S	691	S691F	tCc	tTc	4	4	AY.102	0.000106
S	691	S691F	tCc	tTc	4	4	AY.119	0.000141
S	691	S691S	tcC	tcT	4	4	AY.14	0.000352
S	691	S691S	tcC	tcT	4	4	AY.35	0.000932
S	691	S691S	tcC	tcT	4	4	AY.38	0.001997
S	691	S691S	tcC	tcT	4	4	AY.4.3	0.003367
S	691	S691S	tcC	tcT	4	4	AY.51	0.003636
S	691	S691S	tcC	tcT	4	4	AY.75	0.000224
S	691	S691F	tCc	tTc	4	4	AY.9	0.00027
S	691	S691S	tcC	tcT	3	4	AY.91	0.002191
S	691	S691S	tcC	tcG	1	4	AY.91	0.00073
S	691	S691S	tcC	tcT	4	4	AY.92	0.001149
S	691	S691F	tCc	tTc	4	4	AY.98	0.000316
S	691	S691S	tcC	tcT	4	4	AY.98.1	0.000194
S	691	S691S	tcC	tcT	4	4	B.1.1.159	0.018692
S	691	S691S	tcC	tcT	4	4	B.1.1.285	0.026144
S	691	S691S	tcC	tcT	4	4	B.1.1.354	0.017544
S	691	S691del	TCC	---	4	4	B.1.1.7	0.000004
S	691	S691Y	tCc	tAc	4	4	B.1.177	0.000053
S	691	S691S	tcC	tcT	4	4	B.1.177.60	0.000874
S	691	S691P	Tcc	Ccc	4	4	B.1.2	0.000035
S	691	S691S	tcC	tcT	4	4	B.1.351.2	0.00121
S	691	S691S	tcC	tcT	4	4	B.1.36.38	0.006568
S	691	S691S	tcC	tcT	4	4	B.1.396	0.002823
S	691	S691S	tcC	tcT	4	4	B.1.405	0.049383
S	691	S691F	tCc	tTc	4	4	B.1.429	0.000094
S	691	S691S	tcC	tcT	4	4	B.1.438.1	0.000429
S	691	S691S	tcC	tcT	4	4	B.1.523	0.009804
S	691	S691S	tcC	tcT	4	4	B.1.582	0.001963
S	691	S691S	tcC	tcT	2	4	C.36	0.001821
S	691	S691S	tcC	tcA	2	4	C.36	0.001821
S	691	S691P	Tcc	Ccc	4	4	P.1.15	0.000929
S	691	S691F	tCc	tTc	4	4	Q.1	0.000505
S	691	S691S	tcC	tcT	3	3	A	0.001161
S	691	S691S	tcC	tcT	3	3	A.2.5	0.001497
S	691	S691F	tCc	tTc	3	3	A.2.5	0.001497
S	691	S691F	tCc	tTc	3	3	AA.1	0.021739
S	691	S691Y	tCc	tAc	3	3	AY.103	0.000019
S	691	S691S	tcC	tcT	3	3	AY.114	0.000693
S	691	S691del	TCC	---	3	3	AY.25	0.000018
S	691	S691S	tcC	tcT	3	3	AY.39.1	0.000119
S	691	S691F	tCc	tTc	3	3	AY.45	0.000365
S	691	S691F	tCc	tTc	3	3	AY.46	0.000312
S	691	S691S	tcC	tcT	3	3	AY.46.2	0.001906
S	691	S691S	tcC	tcT	3	3	AY.9	0.000203
S	691	S691S	tcC	tcT	3	3	AY.99.1	0.004658
S	691	S691P	Tcc	Ccc	3	3	B.1.1	0.000054
S	691	S691S	tcC	tcT	3	3	B.1.1.263	0.004673
S	691	S691S	tcC	tcT	3	3	B.1.1.298	0.002586
S	691	S691Y	tCc	tAc	3	3	B.1.1.318	0.000905
S	691	S691P	Tcc	Ccc	3	3	B.1.1.434	0.001046
S	691	S691S	tcC	tcT	3	3	B.1.1.521	0.016043
S	691	S691S	tcC	tcT	3	3	B.1.1.63	0.001157
S	691	S691F	tCc	tTc	3	3	B.1.160	0.000094
S	691	S691S	tcC	tcT	3	3	B.1.177.80	0.005736
S	691	S691Y	tCc	tAc	3	3	B.1.2	0.000026
S	691	S691T	Tcc	Acc	3	3	B.1.2	0.000026
S	691	S691S	tcC	tcT	3	3	B.1.206	0.002447
S	691	S691S	tcC	tcT	2	3	B.1.241	0.001623
S	691	S691S	tcC	tcA	1	3	B.1.241	0.000812
S	691	S691S	tcC	tcT	3	3	B.1.258.17	0.000312
S	691	S691S	tcC	tcT	3	3	B.1.351.3	0.002629
S	691	S691F	tCc	tTc	3	3	B.1.427	0.000151
S	691	S691F	tCc	tTc	3	3	B.1.525	0.000339
S	691	S691S	tcC	tcT	3	3	B.1.541	0.013274
S	691	S691S	tcC	tcT	2	3	B.1.568	0.002222
S	691	S691S	tcC	tcG	1	3	B.1.568	0.001111
S	691	S691S	tcC	tcT	3	3	B.1.574	0.006452
S	691	S691S	tcC	tcT	3	3	B.1.575	0.00091
S	691	S691S	tcC	tcT	3	3	B.1.595	0.000783
S	691	S691T	Tcc	Acc	3	3	B.1.617.1	0.000387
S	691	S691S	tcC	tcT	3	3	B.1.617.1	0.000387
S	691	S691del	TCC	---	3	3	B.1.617.2	0.000011
S	691	S691S	tcC	tcT	3	3	B.1.620	0.002838
S	691	S691F	tCc	tTc	3	3	C.37	0.000348
S	691	S691del	TCC	---	3	3	P.1	0.000047
S	691	S691del	TCC	---	3	3	P.1.15	0.000697
S	691	S691S	tcC	tcT	3	3	P.1.7	0.000958
S	691	S691S	tcC	tcT	3	3	Q.1	0.000379
S	691	S691Y	tCc	tAc	2	2		0.111111
S	691	S691P	Tcc	Ccc	2	2		0.111111
S	691	S691H	TCc	CAc	2	2		0.111111
S	691	S691del1	Tcc	-cc	2	2		0.111111
S	691	S691F	tCc	tTc	2	2		0.111111
S	691	S691F	tCc	tTc	2	2	A	0.000774
S	691	S691H	TCc	CAc	2	2	All	0
S	691	S691L	TCc	CTc	1	2	All	0
S	691	S691G	TCC	GGA	1	2	All	0
S	691	S691G	TCc	GGc	1	2	All	0
S	691	S691L	TCC	CTT	1	2	All	0
S	691	S691S	tcC	tcT	2	2	AU.1	0.002532
S	691	S691S	tcC	tcT	2	2	AU.3	0.004219
S	691	S691P	Tcc	Ccc	2	2	AY.102	0.000053
S	691	S691T	Tcc	Acc	2	2	AY.107	0.000932
S	691	S691S	tcC	tcT	2	2	AY.116.1	0.000623
S	691	S691Y	tCc	tAc	2	2	AY.2	0.000712
S	691	S691P	Tcc	Ccc	2	2	AY.3	0.00002
S	691	S691F	tCc	tTc	2	2	AY.35	0.000466
S	691	S691F	tCc	tTc	2	2	AY.37	0.000632
S	691	S691P	Tcc	Ccc	2	2	AY.39	0.000049
S	691	S691F	tCc	tTc	2	2	AY.39.1	0.000079
S	691	S691A	Tcc	Gcc	2	2	AY.4	0.000003
S	691	S691P	Tcc	Ccc	2	2	AY.4.2	0.000043
S	691	S691S	tcC	tcT	2	2	AY.4.2.1	0.000298
S	691	S691del	TCC	---	2	2	AY.44	0.000012
S	691	S691Y	tCc	tAc	2	2	AY.44	0.000012
S	691	S691S	tcC	tcT	1	2	AY.55	0.000917
S	691	S691S	tcC	tcA	1	2	AY.55	0.000917
S	691	S691F	tCc	tTc	2	2	AY.6	0.000082
S	691	S691S	tcC	tcT	2	2	AY.62	0.000871
S	691	S691S	tcC	tcT	2	2	AY.63	0.000774
S	691	S691S	tcC	tcT	2	2	AY.7.2	0.001119
S	691	S691S	tcC	tcT	2	2	AY.85	0.000854
S	691	S691F	tCc	tTc	2	2	AY.88	0.001768
S	691	S691F	tCc	tTc	2	2	AY.9.2	0.000073
S	691	S691S	tcC	tcT	2	2	AY.99	0.002099
S	691	S691S	tcC	tcT	2	2	B	0.000256
S	691	S691Y	tCc	tAc	2	2	B.1	0.000018
S	691	S691A	Tcc	Gcc	2	2	B.1	0.000018
S	691	S691S	tcC	tcT	2	2	B.1.1.153	0.002191
S	691	S691F	tCc	tTc	2	2	B.1.1.214	0.000111
S	691	S691S	tcC	tcT	2	2	B.1.1.294	0.002532
S	691	S691S	tcC	tcT	2	2	B.1.1.316	0.00185
S	691	S691F	tCc	tTc	2	2	B.1.1.317	0.000823
S	691	S691S	tcC	tcT	2	2	B.1.1.33	0.000842
S	691	S691S	tcC	tcT	2	2	B.1.1.39	0.001019
S	691	S691S	tcC	tcT	2	2	B.1.1.397	0.004505
S	691	S691S	tcC	tcT	2	2	B.1.1.432	0.002532
S	691	S691S	tcC	tcT	2	2	B.1.1.54	0.006042
S	691	S691F	tCc	tTc	2	2	B.1.1.63	0.000772
S	691	S691C	tCc	tGc	2	2	B.1.1.7	0.000002
S	691	S691S	tcC	tcT	2	2	B.1.111	0.00235
S	691	S691F	tCc	tTc	2	2	B.1.160.17	0.003401
S	691	S691S	tcC	tcT	2	2	B.1.177.31	0.022989
S	691	S691C	tCc	tGc	2	2	B.1.177.65	0.001331
S	691	S691S	tcC	tcT	2	2	B.1.177.73	0.001133
S	691	S691F	tCc	tTc	2	2	B.1.177.77	0.001452
S	691	S691S	tcC	tcT	2	2	B.1.187	0.066667
S	691	S691P	Tcc	Ccc	2	2	B.1.240	0.000431
S	691	S691F	tCc	tTc	2	2	B.1.241	0.001623
S	691	S691A	Tcc	Gcc	1	2	B.1.241	0.000812
S	691	S691A	TcC	GcA	1	2	B.1.241	0.000812
S	691	S691G	TCc	GGc	1	2	B.1.241	0.000812
S	691	S691G	TCC	GGA	1	2	B.1.241	0.000812
S	691	S691S	tcC	tcT	2	2	B.1.258.11	0.000793
S	691	S691S	tcC	tcT	2	2	B.1.306	0.011429
S	691	S691S	tcC	tcT	2	2	B.1.334	0.036364
S	691	S691S	tcC	tcT	2	2	B.1.369	0.00057
S	691	S691A	Tcc	Gcc	2	2	B.1.409	0.001563
S	691	S691S	tcC	tcT	2	2	B.1.425	0.005988
S	691	S691Y	tCc	tAc	2	2	B.1.459	0.008163
S	691	S691S	tcC	tcT	2	2	B.1.517	0.000854
S	691	S691S	tcC	tcT	2	2	B.1.525	0.000226
S	691	S691P	Tcc	Ccc	2	2	B.1.526	0.000047
S	691	S691S	tcC	tcT	2	2	B.1.527	0.007407
S	691	S691Y	tCc	tAc	2	2	B.1.539	0.035088
S	691	S691S	tcC	tcT	2	2	B.1.548	0.071429
S	691	S691S	tcC	tcT	2	2	B.1.560	0.009259
S	691	S691del	TCC	---	2	2	B.1.596	0.000174
S	691	S691del	TCC	---	2	2	B.1.621	0.000177
S	691	S691S	tcC	tcT	2	2	B.40	0.000729
S	691	S691S	tcC	tcT	2	2	N.9	0.011905
S	691	S691F	tCc	tTc	2	2	P.1.16	0.000748
S	691	S691S	tcC	tcT	2	2	P.1.4	0.001953
S	691	S691S	tcC	tcT	2	2	P.3	0.00319
S	691	S691S	tcC	tcT	2	2	Q.4	0.00091
S	691	S691T	Tcc	Acc	1	1		0.055556
S	691	S691S	tcC	tcT	1	1	A.1	0.000282
S	691	S691S	tcC	tcT	1	1	A.2	0.000662
S	691	S691T	Tcc	Acc	1	1	A.2.4	0.003367
S	691	S691Y	tCc	tAc	1	1	A.2.5	0.000499
S	691	S691S	tcC	tcT	1	1	A.21	0.00277
S	691	S691X	tCC	tGA	1	1	All	0
S	691	S691del2	tCC	t--	1	1	All	0
S	691	S691W	tCC	tGG	1	1	All	0
S	691	S691S	tcC	tcT	1	1	AY.10	0.00053
S	691	S691S	tcC	tcT	1	1	AY.101	0.00049
S	691	S691P	Tcc	Ccc	1	1	AY.103	0.000006
S	691	S691del	TCC	---	1	1	AY.103	0.000006
S	691	S691A	Tcc	Gcc	1	1	AY.103	0.000006
S	691	S691S	tcC	tcT	1	1	AY.106	0.000335
S	691	S691Y	tCc	tAc	1	1	AY.106	0.000335
S	691	S691S	tcC	tcT	1	1	AY.107	0.000466
S	691	S691S	tcC	tcT	1	1	AY.108	0.001103
S	691	S691F	tCc	tTc	1	1	AY.109	0.00074
S	691	S691F	tCc	tTc	1	1	AY.114	0.000231
S	691	S691F	tCc	tTc	1	1	AY.116.1	0.000311
S	691	S691F	tCc	tTc	1	1	AY.117	0.000085
S	691	S691Y	tCc	tAc	1	1	AY.117	0.000085
S	691	S691Y	tCc	tAc	1	1	AY.120	0.000037
S	691	S691P	Tcc	Ccc	1	1	AY.120	0.000037
S	691	S691A	Tcc	Gcc	1	1	AY.120	0.000037
S	691	S691F	tCc	tTc	1	1	AY.120.1	0.000321
S	691	S691F	tCc	tTc	1	1	AY.13	0.000161
S	691	S691F	tCc	tTc	1	1	AY.14	0.000088
S	691	S691Y	tCc	tAc	1	1	AY.19	0.00114
S	691	S691T	Tcc	Acc	1	1	AY.20	0.000039
S	691	S691P	Tcc	Ccc	1	1	AY.20	0.000039
S	691	S691F	tCc	tTc	1	1	AY.23	0.00007
S	691	S691S	tcC	tcT	1	1	AY.23.1	0.000417
S	691	S691F	tCc	tTc	1	1	AY.24	0.000431
S	691	S691C	tCc	tGc	1	1	AY.27	0.000065
S	691	S691S	tcC	tcT	1	1	AY.27	0.000065
S	691	S691P	Tcc	Ccc	1	1	AY.29	0.000016
S	691	S691S	tcC	tcT	1	1	AY.29.1	0.000221
S	691	S691del	TCC	---	1	1	AY.3	0.00001
S	691	S691S	tcC	tcT	1	1	AY.32	0.000532
S	691	S691S	tcC	tcT	1	1	AY.34.1	0.00051
S	691	S691Y	tCc	tAc	1	1	AY.39.1	0.00004
S	691	S691Y	tCc	tAc	1	1	AY.4.2	0.000022
S	691	S691L	TCC	CTT	1	1	AY.43	0.000004
S	691	S691T	Tcc	Acc	1	1	AY.43	0.000004
S	691	S691del1	TCC	-NN	1	1	AY.43	0.000004
S	691	S691A	Tcc	Gcc	1	1	AY.44	0.000006
S	691	S691Y	tCc	tAc	1	1	AY.46.1	0.001027
S	691	S691F	tCc	tTc	1	1	AY.46.3	0.000934
S	691	S691F	tCc	tTc	1	1	AY.46.4	0.000165
S	691	S691S	tcC	tcT	1	1	AY.46.5	0.000198
S	691	S691F	tCc	tTc	1	1	AY.46.6	0.000072
S	691	S691F	tCc	tTc	1	1	AY.48	0.000465
S	691	S691S	tcC	tcT	1	1	AY.49	0.003195
S	691	S691F	tCc	tTc	1	1	AY.5.3	0.000337
S	691	S691S	tcC	tcT	1	1	AY.50	0.000799
S	691	S691S	tcC	tcT	1	1	AY.53	0.000288
S	691	S691Y	tCc	tAc	1	1	AY.54	0.000095
S	691	S691S	tcC	tcT	1	1	AY.59	0.00053
S	691	S691F	tCc	tTc	1	1	AY.59	0.00053
S	691	S691P	Tcc	Ccc	1	1	AY.60	0.000938
S	691	S691F	tCc	tTc	1	1	AY.65	0.000533
S	691	S691S	tcC	tcT	1	1	AY.68	0.000274
S	691	S691S	tcC	tcT	1	1	AY.70	0.000209
S	691	S691S	tcC	tcT	1	1	AY.72	0.001361
S	691	S691F	tCc	tTc	1	1	AY.73	0.000665
S	691	S691S	tcC	tcT	1	1	AY.73	0.000665
S	691	S691A	Tcc	Gcc	1	1	AY.75	0.000056
S	691	S691S	tcC	tcT	1	1	AY.78	0.001541
S	691	S691S	tcC	tcT	1	1	AY.79	0.001211
S	691	S691F	tCc	tTc	1	1	AY.82	0.001357
S	691	S691S	tcC	tcT	1	1	AY.82	0.001357
S	691	S691del	TCC	---	1	1	AY.84	0.000437
S	691	S691F	tCc	tTc	1	1	AY.89	0.004902
S	691	S691del	TCC	---	1	1	AY.9.2	0.000037
S	691	S691Y	tCc	tAc	1	1	AY.94	0.000443
S	691	S691S	tcC	tcT	1	1	AY.95	0.000761
S	691	S691A	Tcc	Gcc	1	1	AY.98.1	0.000048
S	691	S691del	TCC	---	1	1	AY.99	0.001049
S	691	S691del1	tCc	t-c	1	1	B.1	0.000009
S	691	S691del	TCC	---	1	1	B.1.1	0.000018
S	691	S691Y	tCc	tAc	1	1	B.1.1	0.000018
S	691	S691T	Tcc	Acc	1	1	B.1.1	0.000018
S	691	S691S	tcC	tcT	1	1	B.1.1.148	0.008772
S	691	S691S	tcC	tcT	1	1	B.1.1.169	0.018182
S	691	S691S	tcC	tcT	1	1	B.1.1.207	0.001182
S	691	S691F	tCc	tTc	1	1	B.1.1.219	0.005
S	691	S691F	tCc	tTc	1	1	B.1.1.261	0.008621
S	691	S691F	tCc	tTc	1	1	B.1.1.265	0.003155
S	691	S691S	tcC	tcT	1	1	B.1.1.269	0.001353
S	691	S691F	tCc	tTc	1	1	B.1.1.269	0.001353
S	691	S691F	tCc	tTc	1	1	B.1.1.284	0.000107
S	691	S691F	tCc	tTc	1	1	B.1.1.291	0.000742
S	691	S691F	tCc	tTc	1	1	B.1.1.294	0.001266
S	691	S691F	tCc	tTc	1	1	B.1.1.297	0.002237
S	691	S691S	tcC	tcT	1	1	B.1.1.297	0.002237
S	691	S691S	tcC	tcT	1	1	B.1.1.299	0.012195
S	691	S691S	tcC	tcT	1	1	B.1.1.307	0.002532
S	691	S691S	tcC	tcT	1	1	B.1.1.317	0.000412
S	691	S691S	tcC	tcT	1	1	B.1.1.318	0.000302
S	691	S691F	tCc	tTc	1	1	B.1.1.33	0.000421
S	691	S691S	tcC	tcT	1	1	B.1.1.337	0.003597
S	691	S691F	tCc	tTc	1	1	B.1.1.343	0.020833
S	691	S691S	tcC	tcT	1	1	B.1.1.343	0.020833
S	691	S691S	tcC	tcT	1	1	B.1.1.368	0.003086
S	691	S691del	TCC	---	1	1	B.1.1.372	0.000689
S	691	S691S	tcC	tcT	1	1	B.1.1.373	0.02381
S	691	S691S	tcC	tcT	1	1	B.1.1.409	0.002833
S	691	S691F	tCc	tTc	1	1	B.1.1.419	0.007407
S	691	S691F	tCc	tTc	1	1	B.1.1.420	0.001006
S	691	S691F	tCc	tTc	1	1	B.1.1.434	0.000349
S	691	S691S	tcC	tcT	1	1	B.1.1.437	0.010417
S	691	S691S	tcC	tcT	1	1	B.1.1.46	0.004367
S	691	S691S	tcC	tcT	1	1	B.1.1.464	0.001473
S	691	S691S	tcC	tcT	1	1	B.1.1.486	0.001577
S	691	S691P	Tcc	Ccc	1	1	B.1.1.50	0.000679
S	691	S691F	tCc	tTc	1	1	B.1.1.514	0.038462
S	691	S691S	tcC	tcT	1	1	B.1.1.58	0.005376
S	691	S691L	TCc	CTc	1	1	B.1.1.7	0.000001
S	691	S691del1	tcC	tc-	1	1	B.1.1.7	0.000001
S	691	S691S	tcC	tcT	1	1	B.1.128	0.000635
S	691	S691F	tCc	tTc	1	1	B.1.147	0.000756
S	691	S691S	tcC	tcT	1	1	B.1.160.23	0.004831
S	691	S691S	tcC	tcT	1	1	B.1.160.25	0.011111
S	691	S691S	tcC	tcA	1	1	B.1.160.32	0.004292
S	691	S691P	Tcc	Ccc	1	1	B.1.177	0.000013
S	691	S691S	tcC	tcT	1	1	B.1.177.10	0.000878
S	691	S691S	tcC	tcT	1	1	B.1.177.16	0.000664
S	691	S691F	tCc	tTc	1	1	B.1.177.21	0.000076
S	691	S691S	tcC	tcT	1	1	B.1.177.23	0.003236
S	691	S691S	tcC	tcT	1	1	B.1.177.32	0.00135
S	691	S691S	tcC	tcT	1	1	B.1.177.44	0.000519
S	691	S691S	tcC	tcT	1	1	B.1.177.45	0.000381
S	691	S691S	tcC	tcT	1	1	B.1.177.50	0.004695
S	691	S691S	tcC	tcT	1	1	B.1.177.55	0.002331
S	691	S691S	tcC	tcT	1	1	B.1.177.77	0.000726
S	691	S691F	tCc	tTc	1	1	B.1.177.8	0.000752
S	691	S691P	Tcc	Ccc	1	1	B.1.177.8	0.000752
S	691	S691F	tCc	tTc	1	1	B.1.177.87	0.000728
S	691	S691F	tCc	tTc	1	1	B.1.177.9	0.001332
S	691	S691S	tcC	tcT	1	1	B.1.179	0.003759
S	691	S691del	TCC	---	1	1	B.1.2	0.000009
S	691	S691del2	tCC	t--	1	1	B.1.2	0.000009
S	691	S691P	Tcc	Ccc	1	1	B.1.206	0.000816
S	691	S691S	tcC	tcT	1	1	B.1.214.2	0.0006
S	691	S691S	tcC	tcT	1	1	B.1.221.1	0.002907
S	691	S691S	tcC	tcT	1	1	B.1.229	0.009709
S	691	S691Y	tCc	tAc	1	1	B.1.234	0.000132
S	691	S691S	tcC	tcT	1	1	B.1.239	0.001221
S	691	S691C	tCc	tGc	1	1	B.1.241	0.000812
S	691	S691X	tCC	tGA	1	1	B.1.241	0.000812
S	691	S691F	tCc	tTc	1	1	B.1.243	0.00007
S	691	S691F	tCc	tTc	1	1	B.1.258	0.000067
S	691	S691S	tcC	tcT	1	1	B.1.258.14	0.00098
S	691	S691S	tcC	tcT	1	1	B.1.258.22	0.002667
S	691	S691S	tcC	tcT	1	1	B.1.258.3	0.001675
S	691	S691S	tcC	tcT	1	1	B.1.258.5	0.008772
S	691	S691F	tCc	tTc	1	1	B.1.260	0.003344
S	691	S691A	Tcc	Gcc	1	1	B.1.311	0.000275
S	691	S691F	tCc	tTc	1	1	B.1.320	0.001245
S	691	S691S	tcC	tcT	1	1	B.1.320	0.001245
S	691	S691S	tcC	tcT	1	1	B.1.324	0.001605
S	691	S691S	tcC	tcT	1	1	B.1.338	0.008621
S	691	S691F	tCc	tTc	1	1	B.1.338	0.008621
S	691	S691A	Tcc	Gcc	1	1	B.1.351	0.00003
S	691	S691F	tCc	tTc	1	1	B.1.351.5	0.0006
S	691	S691S	tcC	tcT	1	1	B.1.36.1	0.00114
S	691	S691F	tCc	tTc	1	1	B.1.36.16	0.001425
S	691	S691S	tcC	tcT	1	1	B.1.36.18	0.00042
S	691	S691S	tcC	tcT	1	1	B.1.36.22	0.001208
S	691	S691F	tCc	tTc	1	1	B.1.36.27	0.000763
S	691	S691F	tCc	tTc	1	1	B.1.36.29	0.000517
S	691	S691S	tcC	tcT	1	1	B.1.36.29	0.000517
S	691	S691S	tcC	tcT	1	1	B.1.36.36	0.000602
S	691	S691S	tcC	tcT	1	1	B.1.36.39	0.002217
S	691	S691F	tCc	tTc	1	1	B.1.367	0.000792
S	691	S691F	tCc	tTc	1	1	B.1.369	0.000285
S	691	S691S	tcC	tcT	1	1	B.1.398	0.002976
S	691	S691F	tCc	tTc	1	1	B.1.422	0.000812
S	691	S691S	tcC	tcT	1	1	B.1.428	0.00102
S	691	S691F	tCc	tTc	1	1	B.1.428	0.00102
S	691	S691F	tCc	tTc	1	1	B.1.450	0.011364
S	691	S691S	tcC	tcT	1	1	B.1.468	0.005714
S	691	S691S	tcC	tcT	1	1	B.1.470	0.001404
S	691	S691F	tCc	tTc	1	1	B.1.497	0.000315
S	691	S691F	tCc	tTc	1	1	B.1.501	0.007353
S	691	S691S	tcC	tcT	1	1	B.1.509	0.000866
S	691	S691S	tcC	tcT	1	1	B.1.521	0.004975
S	691	S691F	tCc	tTc	1	1	B.1.523	0.002451
S	691	S691S	tcC	tcT	1	1	B.1.536	0.02381
S	691	S691S	tcC	tcT	1	1	B.1.540	0.009709
S	691	S691P	Tcc	Ccc	1	1	B.1.545	0.014493
S	691	S691S	tcC	tcT	1	1	B.1.558	0.004566
S	691	S691S	tcC	tcT	1	1	B.1.564.1	0.001577
S	691	S691F	tCc	tTc	1	1	B.1.571	0.009709
S	691	S691S	tcC	tcT	1	1	B.1.576	0.000907
S	691	S691S	tcC	tcT	1	1	B.1.577	0.000687
S	691	S691F	tCc	tTc	1	1	B.1.582	0.000491
S	691	S691S	tcC	tcT	1	1	B.1.588	0.00091
S	691	S691P	Tcc	Ccc	1	1	B.1.596.1	0.009346
S	691	S691F	tCc	tTc	1	1	B.1.609	0.000479
S	691	S691F	tCc	tTc	1	1	B.1.610	0.003546
S	691	S691S	tcC	tcT	1	1	B.1.612	0.002653
S	691	S691Y	tCc	tAc	1	1	B.1.617.2	0.000004
S	691	S691del1	tcC	tc-	1	1	B.1.617.2	0.000004
S	691	S691S	tcC	tcT	1	1	B.1.619.1	0.000641
S	691	S691del	TCC	---	1	1	B.1.620	0.000946
S	691	S691S	tcC	tcG	1	1	B.1.622	0.012987
S	691	S691S	tcC	tcT	1	1	B.1.623	0.000536
S	691	S691P	Tcc	Ccc	1	1	B.1.623	0.000536
S	691	S691S	tcC	tcT	1	1	B.1.625	0.002353
S	691	S691del	TCC	---	1	1	B.1.627	0.00202
S	691	S691P	Tcc	Ccc	1	1	B.1.632	0.006711
S	691	S691del	TCC	---	1	1	B.1.638	0.052632
S	691	S691S	tcC	tcT	1	1	B.29	0.003509
S	691	S691S	tcC	tcT	1	1	B.30	0.014706
S	691	S691S	tcC	tcT	1	1	B.31	0.003731
S	691	S691P	Tcc	Ccc	1	1	B.40	0.000364
S	691	S691S	tcC	tcT	1	1	B.6	0.00091
S	691	S691S	tcC	tcT	1	1	C.1.2	0.004255
S	691	S691S	tcC	tcG	1	1	C.10	0.25
S	691	S691F	tCc	tTc	1	1	C.16	0.00106
S	691	S691S	tcC	tcT	1	1	C.17	0.055556
S	691	S691S	tcC	tcT	1	1	C.23	0.005814
S	691	S691S	tcC	tcT	1	1	C.35	0.000774
S	691	S691del	TCC	---	1	1	C.37	0.000116
S	691	S691C	tCc	tGc	1	1	D.2	0.000075
S	691	S691W	tCC	tGG	1	1	D.2	0.000075
S	691	S691P	Tcc	Ccc	1	1	D.2	0.000075
S	691	S691A	Tcc	Gcc	1	1	D.2	0.000075
S	691	S691F	tCc	tTc	1	1	D.5	0.004975
S	691	S691S	tcC	tcT	1	1	N.6	0.007092
S	691	S691S	tcC	tcT	1	1	P.1.1	0.000318
S	691	S691S	tcC	tcG	1	1	P.1.11	0.010204
S	691	S691P	Tcc	Ccc	1	1	P.1.12	0.000484
S	691	S691del	TCC	---	1	1	P.1.13	0.000898
S	691	S691P	Tcc	Ccc	1	1	P.1.14	0.000048
S	691	S691P	Tcc	Ccc	1	1	P.1.16	0.000374
S	691	S691F	tCc	tTc	1	1	P.1.17.1	0.000875
S	691	S691P	Tcc	Ccc	1	1	P.1.2	0.001156
S	691	S691S	tcC	tcT	1	1	P.1.9	0.004808
S	691	S691S	tcC	tcT	1	1	P.4	0.003802
S	691	S691S	tcC	tcT	1	1	Q.3	0.000145
S	691	S691P	Tcc	Ccc	1	1	Q.4	0.000455
S	691	S691F	tCc	tTc	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.