CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 69 | H69del | del | CAT | --- | 1157339 | 1157339 | 1 | 21767-21769 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 69 | H69del | CAT | --- | 1157339 | 1157339 | All | 0.221355 |
S | 69 | H69del | CAT | --- | 1083388 | 1083388 | B.1.1.7 | 0.969874 |
S | 69 | H69del | CAT | --- | 10285 | 10285 | B.1.258 | 0.684435 |
S | 69 | H69del | CAT | --- | 9142 | 9142 | B.1.258.17 | 0.950509 |
S | 69 | H69del | CAT | --- | 8275 | 8275 | B.1.525 | 0.936404 |
S | 69 | H69del | CAT | --- | 7740 | 7740 | Q.1 | 0.977767 |
S | 69 | H69del | CAT | --- | 6655 | 6655 | Q.3 | 0.965192 |
S | 69 | H69del | CAT | --- | 5976 | 5976 | Q.8 | 0.985488 |
S | 69 | H69del | CAT | --- | 2458 | 2458 | B.1.258.11 | 0.974237 |
S | 69 | H69del | CAT | --- | 2164 | 2164 | B.1.1 | 0.039257 |
S | 69 | H69del | CAT | --- | 2122 | 2122 | Q.4 | 0.964984 |
S | 69 | H69del | CAT | --- | 1435 | 1435 | Q.2 | 0.880368 |
S | 69 | H69del | CAT | --- | 1357 | 1357 | C.36.3 | 0.769711 |
S | 69 | H69del | CAT | --- | 1316 | 1316 | B.1 | 0.012054 |
S | 69 | H69del | CAT | --- | 1183 | 1183 | B.1.375 | 0.969672 |
S | 69 | H69del | CAT | --- | 1054 | 1054 | B.1.620 | 0.997162 |
S | 69 | H69del | CAT | --- | 1031 | 1031 | B.1.1.298 | 0.888793 |
S | 69 | H69del | CAT | --- | 893 | 893 | Q.7 | 0.992222 |
S | 69 | H69del | CAT | --- | 548 | 548 | AY.44 | 0.003336 |
S | 69 | H69del | CAT | --- | 518 | 518 | B.1.258.7 | 0.99044 |
S | 69 | H69del | CAT | --- | 469 | 469 | AY.43 | 0.002078 |
S | 69 | H69del | CAT | --- | 385 | 385 | B.1.617.2 | 0.00145 |
S | 69 | H69del | CAT | --- | 373 | 373 | B.1.258.22 | 0.994667 |
S | 69 | H69del | CAT | --- | 352 | 352 | C.37 | 0.040854 |
S | 69 | H69del | CAT | --- | 347 | 347 | A.28 | 0.917989 |
S | 69 | H69del | CAT | --- | 333 | 333 | B.1.625 | 0.783529 |
S | 69 | H69del | CAT | --- | 292 | 292 | AY.4 | 0.000454 |
S | 69 | H69del | CAT | --- | 289 | 289 | B.1.258.4 | 0.996552 |
S | 69 | H69del | CAT | --- | 286 | 286 | AY.25 | 0.00172 |
S | 69 | H69del | CAT | --- | 274 | 274 | B.1.634 | 0.938356 |
S | 69 | H69del | CAT | --- | 269 | 269 | B.1.429 | 0.006329 |
S | 69 | H69del | CAT | --- | 260 | 260 | C.36.3.1 | 0.706522 |
S | 69 | H69del | CAT | --- | 200 | 200 | B.1.258.9 | 1 |
S | 69 | H69del | CAT | --- | 185 | 185 | AY.103 | 0.001149 |
S | 69 | H69del | CAT | --- | 171 | 171 | AY.3 | 0.001701 |
S | 69 | H69del | CAT | --- | 167 | 167 | B.1.427 | 0.008433 |
S | 69 | H69del | CAT | --- | 166 | 166 | B.1.576 | 0.150499 |
S | 69 | H69del | CAT | --- | 161 | 161 | P.1 | 0.002536 |
S | 69 | H69del | CAT | --- | 150 | 150 | B.1.2 | 0.001321 |
S | 69 | H69del | CAT | --- | 150 | 150 | Q.6 | 0.993377 |
S | 69 | H69del | CAT | --- | 147 | 147 | AY.23 | 0.010253 |
S | 69 | H69del | CAT | --- | 141 | 141 | B.1.258.19 | 1 |
S | 69 | H69del | CAT | --- | 129 | 129 | B.1.415.1 | 0.977273 |
S | 69 | H69del | CAT | --- | 128 | 128 | B.1.258.21 | 0.992248 |
S | 69 | H69del | CAT | --- | 125 | 125 | AY.36 | 0.018527 |
S | 69 | H69del | CAT | --- | 123 | 123 | B.1.258.12 | 0.968504 |
S | 69 | H69del | CAT | --- | 113 | 113 | B.1.258.5 | 0.991228 |
S | 69 | H69del | CAT | --- | 111 | 111 | B.1.1.70 | 0.037858 |
S | 69 | H69del | CAT | --- | 104 | 104 | B.1.177 | 0.001369 |
S | 69 | H69del | CAT | --- | 87 | 87 | AY.26 | 0.002463 |
S | 69 | H69del | CAT | --- | 84 | 84 | B.1.258.10 | 0.954545 |
S | 69 | H69del | CAT | --- | 82 | 82 | AY.39 | 0.002026 |
S | 69 | H69del | CAT | --- | 77 | 77 | AY.42 | 0.003098 |
S | 69 | H69del | CAT | --- | 76 | 76 | B.1.160 | 0.00237 |
S | 69 | H69del | CAT | --- | 69 | 69 | P.1.10.1 | 0.560976 |
S | 69 | H69del | CAT | --- | 67 | 67 | AY.9.2 | 0.002461 |
S | 69 | H69del | CAT | --- | 64 | 64 | B.1.596 | 0.005577 |
S | 69 | H69del | CAT | --- | 63 | 63 | AY.102 | 0.00167 |
S | 69 | H69del | CAT | --- | 63 | 63 | B.1.1.205 | 0.234201 |
S | 69 | H69del | CAT | --- | 61 | 61 | B.1.258.20 | 0.968254 |
S | 69 | H69del | CAT | --- | 60 | 60 | R.1 | 0.005401 |
S | 69 | H69del | CAT | --- | 59 | 59 | Q.5 | 1 |
S | 69 | H69del | CAT | --- | 56 | 56 | B.1.609 | 0.026846 |
S | 69 | H69del | CAT | --- | 55 | 55 | B.1.617.1 | 0.007093 |
S | 69 | H69del | CAT | --- | 51 | 51 | AY.109 | 0.037722 |
S | 69 | H69del | CAT | --- | 50 | 50 | B.1.258.6 | 0.980392 |
S | 69 | H69del | CAT | --- | 49 | 49 | B.1.221 | 0.003481 |
S | 69 | H69del | CAT | --- | 47 | 47 | B.1.526 | 0.001105 |
S | 69 | H69del | CAT | --- | 45 | 45 | AY.9 | 0.003042 |
S | 69 | H69del | CAT | --- | 45 | 45 | B | 0.005752 |
S | 69 | H69del | CAT | --- | 45 | 45 | XA | 1 |
S | 69 | H69del | CAT | --- | 44 | 44 | AY.75 | 0.002465 |
S | 69 | H69del | CAT | --- | 41 | 41 | AY.61 | 0.004296 |
S | 69 | H69del | CAT | --- | 41 | 41 | B.1.258.23 | 0.97619 |
S | 69 | H69del | CAT | --- | 41 | 41 | B.1.639 | 0.891304 |
S | 69 | H69del | CAT | --- | 40 | 40 | AY.5 | 0.000826 |
S | 69 | H69del | CAT | --- | 37 | 37 | AY.46 | 0.003851 |
S | 69 | H69del | CAT | --- | 36 | 36 | AY.47 | 0.00112 |
S | 69 | H69del | CAT | --- | 36 | 36 | B.1.637 | 0.002631 |
S | 69 | H69del | CAT | --- | 36 | 36 | P.1.1 | 0.011436 |
S | 69 | H69del | CAT | --- | 35 | 35 | AY.75.1 | 0.006311 |
S | 69 | H69del | CAT | --- | 35 | 35 | B.1.1.409 | 0.09915 |
S | 69 | H69del | CAT | --- | 34 | 34 | AY.100 | 0.001564 |
S | 69 | H69del | CAT | --- | 32 | 32 | AY.53 | 0.009201 |
S | 69 | H69del | CAT | --- | 32 | 32 | AY.99.2 | 0.002949 |
S | 69 | H69del | CAT | --- | 31 | 31 | AY.118 | 0.001942 |
S | 69 | H69del | CAT | --- | 31 | 31 | AY.98 | 0.002449 |
S | 69 | H69del | CAT | --- | 31 | 31 | C.36 | 0.028233 |
S | 69 | H69del | CAT | --- | 29 | 29 | AY.4.5 | 0.003117 |
S | 69 | H69del | CAT | --- | 29 | 29 | B.1.258.24 | 0.311828 |
S | 69 | H69del | CAT | --- | 28 | 28 | AY.117 | 0.002366 |
S | 69 | H69del | CAT | --- | 28 | 28 | B.1.1.519 | 0.001112 |
S | 69 | H69del | CAT | --- | 26 | 26 | AY.98.1 | 0.001259 |
S | 69 | H69del | CAT | --- | 24 | 24 | AY.65 | 0.012793 |
S | 69 | H69del | CAT | --- | 23 | 23 | B.1.1.161 | 0.081272 |
S | 69 | H69del | CAT | --- | 23 | 23 | B.1.621 | 0.002036 |
S | 69 | H69del | CAT | --- | 20 | 20 | AY.34.1 | 0.010199 |
S | 69 | H69del | CAT | --- | 20 | 20 | AY.45 | 0.002434 |
S | 69 | H69del | CAT | --- | 20 | 20 | B.1.351 | 0.000595 |
S | 69 | H69del | CAT | --- | 18 | 18 | A | 0.006966 |
S | 69 | H69del | CAT | --- | 18 | 18 | B.1.1.222 | 0.003672 |
S | 69 | H69del | CAT | --- | 17 | 17 | AY.20 | 0.000661 |
S | 69 | H69del | CAT | --- | 17 | 17 | AY.30 | 0.006727 |
S | 69 | H69del | CAT | --- | 17 | 17 | AY.52 | 0.013844 |
S | 69 | H69del | CAT | --- | 16 | 16 | AY.70 | 0.003336 |
S | 69 | H69del | CAT | --- | 16 | 16 | AY.92 | 0.004596 |
S | 69 | H69del | CAT | --- | 16 | 16 | B.1.1.37 | 0.003086 |
S | 69 | H69del | CAT | --- | 16 | 16 | B.1.1.507 | 0.13913 |
S | 69 | H69del | CAT | --- | 16 | 16 | P.1.12 | 0.007744 |
S | 69 | H69del | CAT | --- | 15 | 15 | AY.16.1 | 0.007049 |
S | 69 | H69del | CAT | --- | 15 | 15 | AY.34 | 0.001454 |
S | 69 | H69del | CAT | --- | 15 | 15 | AY.54 | 0.00143 |
S | 69 | H69del | CAT | --- | 15 | 15 | B.1.1.25 | 0.008528 |
S | 69 | H69del | CAT | --- | 14 | 14 | AY.119 | 0.000494 |
S | 69 | H69del | CAT | --- | 14 | 14 | AY.46.6 | 0.001011 |
S | 69 | H69del | CAT | --- | 14 | 14 | B.1.1.220 | 0.026022 |
S | 69 | H69del | CAT | --- | 14 | 14 | B.1.258.14 | 0.013725 |
S | 69 | H69del | CAT | --- | 13 | 13 | AY.35 | 0.00303 |
S | 69 | H69del | CAT | --- | 13 | 13 | B.1.1.312 | 0.024857 |
S | 69 | H69del | CAT | --- | 12 | 12 | AY.91 | 0.008766 |
S | 69 | H69del | CAT | --- | 11 | 11 | AY.3.1 | 0.000938 |
S | 69 | H69del | CAT | --- | 11 | 11 | AY.33 | 0.000735 |
S | 69 | H69del | CAT | --- | 11 | 11 | AY.68 | 0.003011 |
S | 69 | H69del | CAT | --- | 11 | 11 | AY.9.1 | 0.000921 |
S | 69 | H69del | CAT | --- | 11 | 11 | B.1.1.294 | 0.013924 |
S | 69 | H69del | CAT | --- | 11 | 11 | B.1.177.86 | 0.002018 |
S | 69 | H69del | CAT | --- | 11 | 11 | B.1.411 | 0.040741 |
S | 69 | H69del | CAT | --- | 10 | 10 | AY.16 | 0.003797 |
S | 69 | H69del | CAT | --- | 10 | 10 | AY.39.1 | 0.000396 |
S | 69 | H69del | CAT | --- | 10 | 10 | AY.40 | 0.009643 |
S | 69 | H69del | CAT | --- | 10 | 10 | B.1.1.528 | 0.048077 |
S | 69 | H69del | CAT | --- | 10 | 10 | B.1.258.18 | 1 |
S | 69 | H69del | CAT | --- | 9 | 9 | AY.113 | 0.001282 |
S | 69 | H69del | CAT | --- | 9 | 9 | AY.121 | 0.001218 |
S | 69 | H69del | CAT | --- | 9 | 9 | AY.85 | 0.003845 |
S | 69 | H69del | CAT | --- | 9 | 9 | B.1.388 | 0.818182 |
S | 69 | H69del | CAT | --- | 8 | 8 | 0.444444 | |
S | 69 | H69del | CAT | --- | 8 | 8 | AY.101 | 0.003923 |
S | 69 | H69del | CAT | --- | 8 | 8 | AY.71 | 0.0038 |
S | 69 | H69del | CAT | --- | 8 | 8 | AY.74 | 0.000925 |
S | 69 | H69del | CAT | --- | 8 | 8 | B.1.1.50 | 0.005431 |
S | 69 | H69del | CAT | --- | 8 | 8 | B.1.311 | 0.002197 |
S | 69 | H69del | CAT | --- | 8 | 8 | B.1.367 | 0.006339 |
S | 69 | H69del | CAT | --- | 8 | 8 | B.1.623 | 0.004292 |
S | 69 | H69del | CAT | --- | 7 | 7 | AY.1 | 0.00277 |
S | 69 | H69del | CAT | --- | 7 | 7 | AY.69 | 0.001307 |
S | 69 | H69del | CAT | --- | 7 | 7 | AY.94 | 0.003099 |
S | 69 | H69del | CAT | --- | 7 | 7 | AY.99 | 0.007345 |
S | 69 | H69del | CAT | --- | 7 | 7 | B.1.1.28 | 0.002179 |
S | 69 | H69del | CAT | --- | 7 | 7 | B.1.1.523 | 0.010937 |
S | 69 | H69del | CAT | --- | 7 | 7 | B.1.243 | 0.000487 |
S | 69 | H69del | CAT | --- | 7 | 7 | B.1.393 | 0.2 |
S | 69 | H69del | CAT | --- | 7 | 7 | B.4.1 | 0.132075 |
S | 69 | H69del | CAT | --- | 6 | 6 | AY.105 | 0.003859 |
S | 69 | H69del | CAT | --- | 6 | 6 | AY.106 | 0.002009 |
S | 69 | H69del | CAT | --- | 6 | 6 | AY.5.3 | 0.002024 |
S | 69 | H69del | CAT | --- | 6 | 6 | AY.56 | 0.009631 |
S | 69 | H69del | CAT | --- | 6 | 6 | B.1.1.1 | 0.00196 |
S | 69 | H69del | CAT | --- | 6 | 6 | B.1.1.141 | 0.012072 |
S | 69 | H69del | CAT | --- | 6 | 6 | B.1.1.317 | 0.00247 |
S | 69 | H69del | CAT | --- | 6 | 6 | B.1.1.318 | 0.001811 |
S | 69 | H69del | CAT | --- | 6 | 6 | B.1.157 | 0.01791 |
S | 69 | H69del | CAT | --- | 6 | 6 | B.1.177.31 | 0.068966 |
S | 69 | H69del | CAT | --- | 6 | 6 | B.1.564 | 0.002555 |
S | 69 | H69del | CAT | --- | 6 | 6 | P.1.15 | 0.001394 |
S | 69 | H69del | CAT | --- | 6 | 6 | P.1.16 | 0.002245 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.110 | 0.000563 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.12 | 0.00158 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.14 | 0.00044 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.24 | 0.002155 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.38 | 0.002496 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.39.2 | 0.007704 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.5.4 | 0.001384 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.55 | 0.004587 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.59 | 0.002648 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.6 | 0.000206 |
S | 69 | H69del | CAT | --- | 5 | 5 | AY.7.2 | 0.002796 |
S | 69 | H69del | CAT | --- | 5 | 5 | B.1.139 | 0.003666 |
S | 69 | H69del | CAT | --- | 5 | 5 | B.1.36 | 0.00073 |
S | 69 | H69del | CAT | --- | 5 | 5 | B.1.554 | 0.022026 |
S | 69 | H69del | CAT | --- | 5 | 5 | B.1.575 | 0.001517 |
S | 69 | H69del | CAT | --- | 5 | 5 | B.1.580 | 0.020325 |
S | 69 | H69del | CAT | --- | 5 | 5 | B.1.599 | 0.018248 |
S | 69 | H69del | CAT | --- | 5 | 5 | B.1.628 | 0.001762 |
S | 69 | H69del | CAT | --- | 4 | 4 | A.2.5 | 0.001996 |
S | 69 | H69del | CAT | --- | 4 | 4 | A.25 | 0.072727 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.120 | 0.000149 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.13 | 0.000644 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.21 | 0.00759 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.29 | 0.000063 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.29.1 | 0.000882 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.4.2 | 0.000087 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.4.2.1 | 0.000596 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.46.5 | 0.000794 |
S | 69 | H69del | CAT | --- | 4 | 4 | AY.95 | 0.003044 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.1.10 | 0.004459 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.1.420 | 0.004024 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.1.434 | 0.001394 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.1.448 | 0.00813 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.108 | 0.023256 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.36.8 | 0.004 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.466.2 | 0.001565 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.619 | 0.003484 |
S | 69 | H69del | CAT | --- | 4 | 4 | B.1.621.1 | 0.002023 |
S | 69 | H69del | CAT | --- | 4 | 4 | P.1.7 | 0.001277 |
S | 69 | H69del | CAT | --- | 3 | 3 | AD.2 | 0.000657 |
S | 69 | H69del | CAT | --- | 3 | 3 | AY.111 | 0.000549 |
S | 69 | H69del | CAT | --- | 3 | 3 | AY.120.2.1 | 0.001495 |
S | 69 | H69del | CAT | --- | 3 | 3 | AY.37 | 0.000948 |
S | 69 | H69del | CAT | --- | 3 | 3 | AY.67 | 0.001393 |
S | 69 | H69del | CAT | --- | 3 | 3 | AY.97 | 0.005102 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.1.153 | 0.003286 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.1.216 | 0.002671 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.1.306 | 0.001315 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.1.315 | 0.025424 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.1.372 | 0.002066 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.1.39 | 0.001529 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.1.525 | 0.016393 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.177.81 | 0.000568 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.214 | 0.010989 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.234 | 0.000396 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.237 | 0.014925 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.239 | 0.003663 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.258.15 | 0.056604 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.36.38 | 0.004926 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.369 | 0.000856 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.470 | 0.004213 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.533 | 0.028846 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.565 | 0.002431 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.600 | 0.017544 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.633 | 0.125 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.1.636 | 0.020134 |
S | 69 | H69del | CAT | --- | 3 | 3 | B.52 | 0.030303 |
S | 69 | H69del | CAT | --- | 3 | 3 | P.1.10 | 0.000808 |
S | 69 | H69del | CAT | --- | 3 | 3 | P.1.17 | 0.000485 |
S | 69 | H69del | CAT | --- | 3 | 3 | P.1.6 | 0.005837 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.10 | 0.00106 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.107 | 0.000932 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.108 | 0.002205 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.114 | 0.000462 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.19 | 0.002281 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.32 | 0.001065 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.4.4 | 0.000818 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.62 | 0.000871 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.64 | 0.00119 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.72 | 0.002721 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.81 | 0.003984 |
S | 69 | H69del | CAT | --- | 2 | 2 | AY.88 | 0.001768 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.148 | 0.017544 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.166 | 0.066667 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.241 | 0.004141 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.291 | 0.001485 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.299 | 0.02439 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.34 | 0.026316 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.370 | 0.025316 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.524 | 0.041667 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.1.83 | 0.00542 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.111 | 0.00235 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.170 | 0.008621 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.177.21 | 0.000153 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.177.44 | 0.001038 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.177.6 | 0.001953 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.177.7 | 0.00033 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.177.73 | 0.001133 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.179 | 0.007519 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.214.2 | 0.001199 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.22 | 0.002635 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.258.3 | 0.00335 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.336 | 0.004878 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.380 | 0.013245 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.468 | 0.011429 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.582 | 0.000981 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.590 | 0.009091 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.1.94 | 0.054054 |
S | 69 | H69del | CAT | --- | 2 | 2 | B.6.6 | 0.001778 |
S | 69 | H69del | CAT | --- | 2 | 2 | C.35 | 0.001548 |
S | 69 | H69del | CAT | --- | 2 | 2 | C.39 | 0.037736 |
S | 69 | H69del | CAT | --- | 1 | 1 | A.2.5.1 | 0.004808 |
S | 69 | H69del | CAT | --- | 1 | 1 | A.23.1 | 0.000704 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.11 | 0.001339 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.115 | 0.005208 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.116.1 | 0.000311 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.120.1 | 0.000321 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.120.2 | 0.001285 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.17 | 0.008197 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.4.1 | 0.000737 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.4.3 | 0.000842 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.46.4 | 0.000165 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.5.1 | 0.003759 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.51 | 0.000909 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.58 | 0.000907 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.63 | 0.000387 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.7 | 0.000196 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.73 | 0.000665 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.77 | 0.001127 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.83 | 0.001724 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.86 | 0.00083 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.87 | 0.000833 |
S | 69 | H69del | CAT | --- | 1 | 1 | AY.91.1 | 0.004065 |
S | 69 | H69del | CAT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 69 | H69del | CAT | --- | 1 | 1 | AZ.3 | 0.00152 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.118 | 0.010204 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.134 | 0.011364 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.135 | 0.004695 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.160 | 0.02381 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.171 | 0.003676 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.187 | 0.00885 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.189 | 0.001513 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.231 | 0.003096 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.237 | 0.005405 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.254 | 0.011236 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.265 | 0.003155 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.351 | 0.002793 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.374 | 0.002375 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.375 | 0.011905 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.388 | 0.045455 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.389 | 0.006061 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.397 | 0.002252 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.417 | 0.002703 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.44 | 0.00241 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.459 | 0.015385 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.462 | 0.008621 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.55 | 0.012987 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.62 | 0.027027 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.71 | 0.006061 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.1.99 | 0.02381 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.126 | 0.001276 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.128 | 0.000635 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.160.14 | 0.002119 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.160.32 | 0.004292 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.33 | 0.001645 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.40 | 0.005155 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.45 | 0.000381 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.49 | 0.037037 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.75 | 0.001041 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.77 | 0.000726 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.199 | 0.004132 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.214.3 | 0.007143 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.240 | 0.000216 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.241 | 0.000812 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.242 | 0.018868 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.260 | 0.003344 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.324 | 0.001605 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.351.3 | 0.000876 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.36.10 | 0.004785 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.36.22 | 0.001208 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.361 | 0.001289 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.362 | 0.001541 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.382 | 0.008929 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.391 | 0.001127 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.399 | 0.001934 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.400 | 0.000429 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.406 | 0.006061 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.432 | 0.011236 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.433 | 0.003195 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.441 | 0.009615 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.446 | 0.02 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.462 | 0.007246 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.469 | 0.00361 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.497 | 0.000315 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.499 | 0.00105 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.560 | 0.00463 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.568 | 0.001111 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.595 | 0.000261 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.631 | 0.003367 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.78 | 0.008547 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.81 | 0.021277 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.1.9.5 | 0.005682 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.28 | 0.003279 |
S | 69 | H69del | CAT | --- | 1 | 1 | B.55 | 0.00295 |
S | 69 | H69del | CAT | --- | 1 | 1 | C.16 | 0.00106 |
S | 69 | H69del | CAT | --- | 1 | 1 | C.26 | 0.007353 |
S | 69 | H69del | CAT | --- | 1 | 1 | L.3 | 0.003546 |
S | 69 | H69del | CAT | --- | 1 | 1 | N.5 | 0.001767 |
S | 69 | H69del | CAT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 69 | H69del | CAT | --- | 1 | 1 | P.2 | 0.000187 |
S | 69 | H69del | CAT | --- | 1 | 1 | P.6 | 0.003145 |
S | 69 | H69del | CAT | --- | 1 | 1 | W.2 | 0.004831 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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