CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 688 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S688A688SnonsynGctTct117611720.99659923624-23626

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S688A688SGctTct11721176All0.000224
S688A688SGctTct144145B.1.1.70.000129
S688A688SGctTct142142AY.40.000221
S688A688SGctTct125125AY.430.000554
S688A688SGctTct125125B.1.1.2940.158228
S688A688SGctTct6565B.1.5260.001528
S688A688SGctTct5859B.1.617.20.000218
S688A688SGctTct4343M.11
S688A688SGctTct3535B.1.20.000308
S688A688SGctTct3131B.1.1600.000967
S688A688SGctTct2929B.1.258.170.003015
S688A688SGctTct2525P.10.000394
S688A688SGctTct1818AY.1190.000636
S688A688SGctTct1818B.1.10.000327
S688A688SGctTct1616AY.1030.000099
S688A688SGctTct1313AY.4.50.001397
S688A688SGctTct1212B.10.00011
S688A688SGctTct1112B.1.3510.000327
S688A688SGctTct1010AY.46.50.001984
S688A688SGctTct99AY.1020.000239
S688A688SGctTct99AY.50.000186
S688A688SGctTct77AY.440.000043
S688A688SGctTct77B.1.4280.007143
S688A688SGctTct77B.1.4290.000165
S688A688SGctTct77C.1.10.538462
S688A688SGctTct66AY.1000.000276
S688A688SGctTct66B.1.177.330.009868
S688A688SGctTct66P.1.140.000287
S688A688SGctTct55AY.98.10.000242
S688A688SGctTct55B.1.1.280.001556
S688A688SGctTct55B.1.1.3060.002192
S688A688SGctTct55B.1.1.5190.000199
S688A688SGctTct55B.1.36.80.005
S688A688SGctTct55W.10.043478
S688A688SGctTct44AY.1180.000251
S688A688SGctTct44AY.200.000155
S688A688SGctTct44AY.250.000024
S688A688SGctTct44AY.290.000063
S688A688SGctTct44B.1.1.3520.125
S688A688SGctTct44B.1.2580.000266
S688A688SGctTct44B.1.3060.022857
S688A688SGctTct44C.370.000464
S688A688SGctTct44P.1.170.000647
S688A688SGctTct33AY.260.000085
S688A688SGctTct33AY.270.000194
S688A688SGctTct33AY.340.000291
S688A688SGctTct33AY.5.30.001012
S688A688SGctTct33AY.570.001969
S688A688SGctTct33AY.75.10.000541
S688A688SGctTct33B.1.1770.00004
S688A688SGctTct33B.1.360.000438
S688A688SGctTct33B.1.5950.000783
S688A688SGctTct33B.1.6370.000219
S688A688SGctTct33C.360.002732
S688A688SGctTct33P.1.150.000697
S688A688SGctTct22A.2.50.000998
S688A688SGctTct22AY.1200.000074
S688A688SGctTct22AY.230.000139
S688A688SGctTct22AY.3.10.000171
S688A688SGctTct22AY.34.10.00102
S688A688SGctTct22AY.360.000296
S688A688SGctTct22AY.390.000049
S688A688SGctTct22AY.4.20.000043
S688A688SGctTct22AY.580.001815
S688A688SGctTct22AY.610.00021
S688A688SGctTct22AY.90.000135
S688A688SGctTct22AY.910.001461
S688A688SGctTct22AY.920.000575
S688A688SGctTct22B.1.1.5000.04
S688A688SGctTct22B.1.2340.000264
S688A688SGctTct22B.1.258.240.021505
S688A688SGctTct22B.1.36.240.012346
S688A688SGctTct22B.1.466.20.000782
S688A688SGctTct22B.1.4690.00722
S688A688SGctTct22B.1.6210.000177
S688A688SGctTct22P.70.008734
S688A688SGctTct22R.10.00018
S688A688SGctTct11AY.120.000316
S688A688SGctTct11AY.170.008197
S688A688SGctTct11AY.23.10.000417
S688A688SGctTct11AY.30.00001
S688A688SGctTct11AY.330.000067
S688A688SGctTct11AY.370.000316
S688A688SGctTct11AY.39.10.00004
S688A688SGctTct11AY.460.000104
S688A688SGctTct11AY.46.60.000072
S688A688SGctTct11AY.550.000917
S688A688SGctTct11AY.630.000387
S688A688SGctTct11AY.690.000187
S688A688SGctTct11AY.740.000116
S688A688SGctTct11AY.80.000606
S688A688SGctTct11AY.860.00083
S688A688SGctTct11AY.870.000833
S688A688SGctTct11AY.9.10.000084
S688A688SGctTct11B.1.1.2630.001558
S688A688SGctTct11B.1.1.2900.018182
S688A688SGctTct11B.1.1.3050.003861
S688A688SGctTct11B.1.1.370.000193
S688A688SGctTct11B.1.1.3760.005952
S688A688SGctTct11B.1.177.440.000519
S688A688SGctTct11B.1.177.730.000566
S688A688SGctTct11B.1.2210.000071
S688A688SGctTct11B.1.36.260.002857
S688A688SGctTct11B.1.36.370.002778
S688A688SGctTct11B.1.3930.028571
S688A688SGctTct11B.1.4270.00005
S688A688SGctTct11B.1.4590.004082
S688A688SGctTct11B.1.5240.001406
S688A688SGctTct11B.1.5990.00365
S688A688SGctTct11B.1.621.10.000506
S688A688SGctTct11B.1.6250.002353
S688A688SGctTct11B.1.80.001972
S688A688SGctTct11B.400.000364
S688A688SGctTct11C.10.002392
S688A688SGctTct11K.10.02381
S688A688SGctTct11P.1.120.000484
S688A688SGctTct11P.1.17.10.000875
S688A688SGctTct11P.1.90.004808
S688A688SGctTct11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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