CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 684 & Codon = gcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S684A684AsyngcAgcT2931510.51535823612-23614

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S684A684AgcAgcT151293All0.000029
S684A684AgcAgcT118121AY.40.000184
S684A684AgcAgcT319B.1.1.70.000003
S684A684AgcAgcT1515AY.200.000583
S684A684AgcAgcT18B.1.617.20.000004
S684A684AgcAgcT24AY.390.000049
S684A684AgcAgcT13AY.250.000006
S684A684AgcAgcT33AY.60.000123
S684A684AgcAgcT11AY.1020.000027
S684A684AgcAgcT11AY.1110.000183
S684A684AgcAgcT11AY.1170.000085
S684A684AgcAgcT11AY.1190.000035
S684A684AgcAgcT11AY.420.00004
S684A684AgcAgcT11AZ.10.000867
S684A684AgcAgcT11B.1.3510.00003
S684A684AgcAgcT11B.1.5750.000303

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.