CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 684

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S684A684VnonsyngCagTa38523852123612-23614
S684A684SnonsynGcaTca11611161123612-23614
S684A684TnonsynGcaAca6046030.99834423612-23614
S684A684TnonsynGcAAcG60410.0016556323612-23614
S684A684AsyngcAgcT2931510.51535823612-23614
S684A684AsyngcAgcG2931050.35836223612-23614
S684A684AsyngcAgcC293370.1262823612-23614
S684A684deldelGCA---7272123612-23614
S684A684PnonsynGcaCca5959123612-23614
S684A684EnonsyngCagAa2020123612-23614
S684A684GnonsyngCagGa860.7523612-23614
S684A684GnonsyngCAgGC820.2523612-23614
S684A684del1delGCA-NN210.523612-23614
S684A684del1delGca-ca210.523612-23614

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S684A684VgCagTa38523852All0.000737
S684A684SGcaTca11611161All0.000222
S684A684VgCagTa931931B.1.1.70.000833
S684A684TGcaAca603604All0.000115
S684A684TGcAAcG1604All0
S684A684VgCagTa594594AY.40.000925
S684A684SGcaTca419419AY.270.027118
S684A684VgCagTa314314B.1.617.20.001182
S684A684AgcAgcT151293All0.000029
S684A684AgcAgcG105293All0.00002
S684A684AgcAgcC37293All0.000007
S684A684VgCagTa209209AY.430.000926
S684A684VgCagTa166166AY.250.000998
S684A684SGcaTca149149AY.440.000907
S684A684VgCagTa143143AY.1030.000888
S684A684TGcaAca130130B.1.1.70.000116
S684A684AgcAgcT118121AY.40.000184
S684A684AgcAgcG3121AY.40.000005
S684A684SGcaTca110110B.1.1.70.000098
S684A684VgCagTa107107AY.1190.003778
S684A684TGcaAca101101AY.40.000157
S684A684VgCagTa100100B.1.20.000881
S684A684VgCagTa8989B.1.36.180.037395
S684A684VgCagTa8181AY.30.000806
S684A684delGCA---7272All0.000014
S684A684VgCagTa7272AY.350.016779
S684A684SGcaTca6262AY.40.000096
S684A684PGcaCca5959All0.000011
S684A684TGcaAca5858P.1.140.002772
S684A684TGcaAca5252B.1.4970.016368
S684A684VgCagTa5151P.10.000803
S684A684VgCagTa4848AY.440.000292
S684A684SGcaTca4747B.1.617.20.000177
S684A684VgCagTa4444AD.20.009634
S684A684VgCagTa4040AY.540.003814
S684A684VgCagTa3737B.10.000339
S684A684SGcaTca3535AY.520.028502
S684A684VgCagTa3535Q.30.005076
S684A684AgcAgcG3434AY.3.10.002899
S684A684PGcaCca3434AY.40.000053
S684A684VgCagTa3030AY.1000.00138
S684A684VgCagTa3030B.1.2210.002131
S684A684TGcaAca2828AY.250.000168
S684A684VgCagTa2828B.1.1770.000369
S684A684SGcaTca2525AY.1030.000155
S684A684VgCagTa2525B.1.4270.001262
S684A684VgCagTa2424B.1.10.000435
S684A684VgCagTa2222B.1.4290.000518
S684A684SGcaTca2121AY.1020.000557
S684A684VgCagTa2121AY.420.000845
S684A684VgCagTa2121B.1.2430.001461
S684A684EgCagAa2020All0.000004
S684A684VgCagTa2020P.1.140.000956
S684A684AgcAgcG1219B.1.1.70.000011
S684A684AgcAgcC419B.1.1.70.000004
S684A684AgcAgcT319B.1.1.70.000003
S684A684VgCagTa1919C.370.002205
S684A684VgCagTa1818B.1.4110.066667
S684A684TGcaAca1717AY.230.001186
S684A684SGcaTca1717AY.250.000102
S684A684VgCagTa1717AY.290.000268
S684A684TGcaAca1616B.10.000147
S684A684VgCagTa1515AY.1020.000398
S684A684AgcAgcT1515AY.200.000583
S684A684SGcaTca1515B.10.000137
S684A684VgCagTa1515B.1.1600.000468
S684A684VgCagTa1515B.1.362.11
S684A684TGcaAca1414AY.1030.000087
S684A684TGcaAca1313AY.116.10.004049
S684A684VgCagTa1313B.1.1.5190.000516
S684A684SGcaTca1313D.20.000976
S684A684SGcaTca1212AY.16.10.005639
S684A684SGcaTca1212AY.30.000119
S684A684VgCagTa1212AY.39.10.000475
S684A684VgCagTa1212AY.4.20.00026
S684A684VgCagTa1212AY.9.20.000441
S684A684VgCagTa1212B.1.1.4860.018927
S684A684TGcaAca1212B.1.1.5190.000477
S684A684VgCagTa1212C.36.30.006807
S684A684SGcaTca1111AY.430.000049
S684A684VgCagTa1111B.1.3510.000327
S684A684TGcaAca1010A.270.016556
S684A684VgCagTa1010AY.16.10.004699
S684A684VgCagTa1010AY.470.000311
S684A684VgCagTa1010AY.50.000206
S684A684VgCagTa1010B.1.258.170.00104
S684A684VgCagTa1010B.1.5090.008658
S684A684AgcAgcC1010B.1.5260.000235
S684A684SGcaTca99AY.1200.000335
S684A684delGCA---99B.10.000082
S684A684SGcaTca99B.1.10.000163
S684A684TGcaAca99B.1.1.2840.000967
S684A684TGcaAca99B.1.20.000079
S684A684AgcAgcC99P.1.20.010405
S684A684GgCagGa68All0.000001
S684A684GgCAgGC28All0
S684A684TGcaAca88B.1.10.000145
S684A684VgCagTa88B.1.1.2140.000444
S684A684TGcaAca88B.1.1770.000105
S684A684VgCagTa88B.1.5260.000188
S684A684AgcAgcG78B.1.617.20.000026
S684A684AgcAgcT18B.1.617.20.000004
S684A684TGcaAca88P.10.000126
S684A684VgCagTa77AY.1160.002007
S684A684SGcaTca77AY.1180.000439
S684A684SGcaTca77AY.390.000173
S684A684VgCagTa77AY.4.50.000752
S684A684TGcaAca77AY.440.000043
S684A684SGcaTca77AY.460.000729
S684A684SGcaTca77AY.46.40.001152
S684A684delGCA---77B0.000895
S684A684SGcaTca77B.1.1.5190.000278
S684A684delGCA---77B.1.1.70.000006
S684A684PGcaCca77B.1.1.70.000006
S684A684AgcAgcG57B.1.20.000044
S684A684AgcAgcC27B.1.20.000018
S684A684TGcaAca77B.1.4290.000165
S684A684TGcaAca77Q.30.001015
S684A684TGcaAca66AY.1020.000159
S684A684SGcaTca66AY.1110.001099
S684A684AgcAgcG66AY.4.20.00013
S684A684SGcaTca66AY.4.50.000645
S684A684AgcAgcG66AY.430.000027
S684A684VgCagTa66AY.98.10.000291
S684A684VgCagTa66B.1.1.280.001867
S684A684AgcAgcG66B.1.1390.004399
S684A684SGcaTca66B.1.4270.000303
S684A684SGcaTca66B.1.4290.000141
S684A684VgCagTa66B.1.5610.002382
S684A684VgCagTa66D.20.00045
S684A684VgCagTa66P.1.70.001916
S684A684VgCagTa55AY.1170.000423
S684A684VgCagTa55AY.260.000142
S684A684SGcaTca55AY.260.000142
S684A684TGcaAca55AY.30.00005
S684A684VgCagTa55AY.390.000124
S684A684delGCA---55AY.430.000022
S684A684TGcaAca55AY.9.10.000419
S684A684VgCagTa55AY.920.001436
S684A684AgcAgcG45B.1.10.000073
S684A684AgcAgcC15B.1.10.000018
S684A684VgCagTa55B.1.1.1890.007564
S684A684TGcaAca55B.1.1.280.001556
S684A684SGcaTca55B.1.1.3350.064935
S684A684VgCagTa55B.1.1.700.001705
S684A684SGcaTca55B.1.20.000044
S684A684VgCagTa55B.1.5770.003436
S684A684VgCagTa55B.1.5960.000436
S684A684VgCagTa55B.1.617.10.000645
S684A684SGcaTca55P.10.000079
S684A684SGcaTca44AY.1170.000338
S684A684VgCagTa44AY.1200.000149
S684A684SGcaTca44AY.330.000267
S684A684AgcAgcT24AY.390.000049
S684A684AgcAgcG24AY.390.000049
S684A684VgCagTa44AY.460.000416
S684A684SGcaTca44AY.46.10.004107
S684A684SGcaTca44AY.470.000124
S684A684AgcAgcC44AY.50.000083
S684A684TGcaAca44AY.50.000083
S684A684SGcaTca44AY.620.001743
S684A684VgCagTa44AY.980.000316
S684A684SGcaTca44AY.98.10.000194
S684A684VgCagTa44B.1.1.10.001307
S684A684VgCagTa44B.1.1.330.001684
S684A684EgCagAa44B.1.1.70.000004
S684A684VgCagTa44B.1.177.210.000306
S684A684VgCagTa44B.1.177.860.000734
S684A684SGcaTca44B.1.3510.000119
S684A684TGcaAca44B.1.36.290.002069
S684A684VgCagTa44B.1.5250.000453
S684A684EgCagAa44B.1.617.20.000015
S684A684PGcaCca44C.360.003643
S684A684VgCagTa44P.1.170.000647
S684A684SGcaTca44P.20.000747
S684A684SGcaTca44R.10.00036
S684A684SGcaTca33AY.1000.000138
S684A684VgCagTa33AY.1130.000427
S684A684VgCagTa33AY.130.000483
S684A684VgCagTa33AY.200.000117
S684A684delGCA---33AY.250.000018
S684A684AgcAgcG23AY.250.000012
S684A684AgcAgcT13AY.250.000006
S684A684VgCagTa33AY.330.0002
S684A684TGcaAca33AY.360.000445
S684A684EgCagAa33AY.40.000005
S684A684TGcaAca33AY.430.000013
S684A684EgCagAa33AY.430.000013
S684A684VgCagTa33AY.450.000365
S684A684VgCagTa33AY.480.001395
S684A684AgcAgcT33AY.60.000123
S684A684SGcaTca33AY.610.000314
S684A684AgcAgcG33AY.740.000347
S684A684delGCA---33B.1.10.000054
S684A684VgCagTa33B.1.1.3170.001235
S684A684VgCagTa33B.1.1.3370.010791
S684A684VgCagTa33B.1.1.3980.009677
S684A684SGcaTca33B.1.160.320.012876
S684A684TGcaAca33B.1.177.600.000655
S684A684VgCagTa33B.1.177.770.002179
S684A684TGcaAca33B.1.2390.003663
S684A684VgCagTa33B.1.36.80.003
S684A684VgCagTa33B.1.438.10.000322
S684A684VgCagTa33B.1.5170.001281
S684A684delGCA---33B.1.617.20.000011
S684A684TGcaAca33B.1.617.20.000011
S684A684TGcaAca33B.1.6210.000266
S684A684VgCagTa33B.1.6210.000266
S684A684VgCagTa33C.40.03
S684A684delGCA---33P.10.000047
S684A684delGCA---33P.1.150.000697
S684A684VgCagTa33P.20.00056
S684A684PGcaCca220.111111
S684A684delGCA---220.111111
S684A684GgCAgGC120.055556
S684A684GgCagGa120.055556
S684A684delGCA---22A0.000774
S684A684SGcaTca22A.2.5.10.009615
S684A684TGcaAca22A.23.10.001408
S684A684del1Gca-ca12All0
S684A684del1GCA-NN12All0
S684A684SGcaTca22AY.1130.000285
S684A684TGcaAca22AY.1200.000074
S684A684VgCagTa22AY.1210.000271
S684A684VgCagTa22AY.190.002281
S684A684VgCagTa22AY.240.000862
S684A684VgCagTa22AY.3.10.000171
S684A684TGcaAca22AY.320.001065
S684A684TGcaAca22AY.340.000194
S684A684TGcaAca22AY.390.000049
S684A684SGcaTca22AY.39.20.003082
S684A684SGcaTca22AY.4.20.000043
S684A684SGcaTca22AY.410.000588
S684A684PGcaCca22AY.430.000009
S684A684PGcaCca22AY.440.000012
S684A684VgCagTa22AY.46.40.000329
S684A684SGcaTca22AY.50.000041
S684A684VgCagTa22AY.60.000082
S684A684VgCagTa22AY.680.000547
S684A684SGcaTca22AY.700.000417
S684A684VgCagTa22AY.750.000112
S684A684VgCagTa22AY.90.000135
S684A684VgCagTa22AY.9.10.000167
S684A684GgCagGa12B.1.10.000018
S684A684GgCAgGC12B.1.10.000018
S684A684VgCagTa22B.1.1.2410.004141
S684A684VgCagTa22B.1.1.2510.015873
S684A684VgCagTa22B.1.1.2910.001485
S684A684VgCagTa22B.1.1.3060.000877
S684A684TGcaAca22B.1.1.3320.0625
S684A684VgCagTa22B.1.1.3690.000892
S684A684SGcaTca22B.1.1.390.001019
S684A684VgCagTa22B.1.1.4330.002849
S684A684AgcAgcG22B.1.1.4670.038462
S684A684VgCagTa22B.1.1.710.012121
S684A684VgCagTa22B.1.1580.047619
S684A684VgCagTa22B.1.160.270.030303
S684A684SGcaTca22B.1.1770.000026
S684A684VgCagTa22B.1.177.120.000303
S684A684VgCagTa22B.1.177.190.002861
S684A684VgCagTa22B.1.177.440.001038
S684A684PGcaCca22B.1.20.000018
S684A684VgCagTa22B.1.2060.001631
S684A684VgCagTa22B.1.2340.000264
S684A684VgCagTa22B.1.2400.000431
S684A684VgCagTa22B.1.2580.000133
S684A684VgCagTa22B.1.258.240.021505
S684A684VgCagTa22B.1.3690.00057
S684A684delGCA---22B.1.4620.014493
S684A684VgCagTa22B.1.4990.002101
S684A684SGcaTca22B.1.5960.000174
S684A684delGCA---22B.1.5960.000174
S684A684delGCA---22B.1.6210.000177
S684A684VgCagTa22B.1.6370.000146
S684A684AgcAgcG22P.10.000032
S684A684VgCagTa22P.1.150.000465
S684A684VgCagTa22P.30.00319
S684A684VgCagTa22Q.10.000253
S684A684AgcAgcC110.055556
S684A684AgcAgcG11A0.000387
S684A684SGcaTca11A0.000387
S684A684TGcaAca11A0.000387
S684A684delGCA---11A.10.000282
S684A684VgCagTa11A.23.10.000704
S684A684TGcaAca11AY.10.000396
S684A684AgcAgcG11AY.100.00053
S684A684VgCagTa11AY.1010.00049
S684A684AgcAgcT11AY.1020.000027
S684A684delGCA---11AY.1030.000006
S684A684AgcAgcC11AY.1030.000006
S684A684VgCagTa11AY.1070.000466
S684A684VgCagTa11AY.110.001339
S684A684AgcAgcT11AY.1110.000183
S684A684VgCagTa11AY.1150.005208
S684A684PGcaCca11AY.1160.000287
S684A684AgcAgcT11AY.1170.000085
S684A684TGcaAca11AY.1190.000035
S684A684AgcAgcT11AY.1190.000035
S684A684SGcaTca11AY.1210.000135
S684A684VgCagTa11AY.140.000088
S684A684VgCagTa11AY.150.002222
S684A684VgCagTa11AY.160.00038
S684A684EgCagAa11AY.16.10.00047
S684A684EgCagAa11AY.190.00114
S684A684TGcaAca11AY.200.000039
S684A684SGcaTca11AY.200.000039
S684A684SGcaTca11AY.230.00007
S684A684TGcaAca11AY.260.000028
S684A684VgCagTa11AY.270.000065
S684A684TGcaAca11AY.290.000016
S684A684SGcaTca11AY.290.000016
S684A684TGcaAca11AY.29.10.000221
S684A684delGCA---11AY.30.00001
S684A684AgcAgcG11AY.30.00001
S684A684VgCagTa11AY.300.000396
S684A684AgcAgcC11AY.300.000396
S684A684VgCagTa11AY.34.10.00051
S684A684SGcaTca11AY.350.000233
S684A684SGcaTca11AY.360.000148
S684A684GgCagGa11AY.40.000002
S684A684TGcaAca11AY.4.20.000022
S684A684VgCagTa11AY.4.2.10.000149
S684A684TGcaAca11AY.4.2.10.000149
S684A684TGcaAca11AY.4.30.000842
S684A684VgCagTa11AY.400.000964
S684A684AgcAgcT11AY.420.00004
S684A684del1Gca-ca11AY.430.000004
S684A684AgcAgcG11AY.440.000006
S684A684PGcaCca11AY.460.000104
S684A684delGCA---11AY.46.20.000635
S684A684VgCagTa11AY.46.50.000198
S684A684TGcaAca11AY.46.60.000072
S684A684SGcaTca11AY.480.000465
S684A684VgCagTa11AY.5.30.000337
S684A684VgCagTa11AY.5.40.000277
S684A684SGcaTca11AY.500.000799
S684A684VgCagTa11AY.550.000917
S684A684VgCagTa11AY.570.000656
S684A684SGcaTca11AY.590.00053
S684A684SGcaTca11AY.60.000041
S684A684SGcaTca11AY.600.000938
S684A684VgCagTa11AY.610.000105
S684A684GgCagGa11AY.650.000533
S684A684VgCagTa11AY.670.000464
S684A684SGcaTca11AY.670.000464
S684A684SGcaTca11AY.680.000274
S684A684PGcaCca11AY.690.000187
S684A684AgcAgcC11AY.70.000196
S684A684SGcaTca11AY.70.000196
S684A684VgCagTa11AY.7.10.000113
S684A684SGcaTca11AY.7.10.000113
S684A684SGcaTca11AY.740.000116
S684A684VgCagTa11AY.740.000116
S684A684SGcaTca11AY.750.000056
S684A684VgCagTa11AY.75.10.00018
S684A684SGcaTca11AY.780.001541
S684A684SGcaTca11AY.80.000606
S684A684VgCagTa11AY.800.001129
S684A684VgCagTa11AY.840.000437
S684A684delGCA---11AY.840.000437
S684A684VgCagTa11AY.860.00083
S684A684VgCagTa11AY.880.000884
S684A684AgcAgcG11AY.9.10.000084
S684A684delGCA---11AY.9.20.000037
S684A684VgCagTa11AY.910.00073
S684A684TGcaAca11AY.98.10.000048
S684A684delGCA---11AY.990.001049
S684A684TGcaAca11AY.99.20.000092
S684A684SGcaTca11AY.99.20.000092
S684A684VgCagTa11AY.99.20.000092
S684A684AgcAgcT11AZ.10.000867
S684A684SGcaTca11B0.000128
S684A684VgCagTa11B0.000128
S684A684AgcAgcG11B0.000128
S684A684del1GCA-NN11B.10.000009
S684A684AgcAgcG11B.10.000009
S684A684EgCagAa11B.10.000009
S684A684PGcaCca11B.10.000009
S684A684VgCagTa11B.1.1.2040.00304
S684A684AgcAgcG11B.1.1.2140.000055
S684A684VgCagTa11B.1.1.2200.001859
S684A684VgCagTa11B.1.1.2220.000204
S684A684SGcaTca11B.1.1.2220.000204
S684A684VgCagTa11B.1.1.2290.005747
S684A684VgCagTa11B.1.1.250.000569
S684A684SGcaTca11B.1.1.250.000569
S684A684VgCagTa11B.1.1.2560.013699
S684A684VgCagTa11B.1.1.2630.001558
S684A684VgCagTa11B.1.1.2690.001353
S684A684VgCagTa11B.1.1.2770.000759
S684A684SGcaTca11B.1.1.280.000311
S684A684SGcaTca11B.1.1.2840.000107
S684A684VgCagTa11B.1.1.2840.000107
S684A684TGcaAca11B.1.1.3060.000438
S684A684AgcAgcG11B.1.1.3170.000412
S684A684SGcaTca11B.1.1.3180.000302
S684A684SGcaTca11B.1.1.330.000421
S684A684SGcaTca11B.1.1.3690.000446
S684A684VgCagTa11B.1.1.370.000193
S684A684delGCA---11B.1.1.3720.000689
S684A684SGcaTca11B.1.1.3770.001381
S684A684VgCagTa11B.1.1.3810.04
S684A684VgCagTa11B.1.1.40.002976
S684A684VgCagTa11B.1.1.4320.001266
S684A684VgCagTa11B.1.1.500.000679
S684A684SGcaTca11B.1.1.500.000679
S684A684PGcaCca11B.1.1.5190.00004
S684A684AgcAgcC11B.1.1.5190.00004
S684A684SGcaTca11B.1.1.5260.003546
S684A684VgCagTa11B.1.1310.008772
S684A684VgCagTa11B.1.1570.002985
S684A684delGCA---11B.1.1600.000031
S684A684SGcaTca11B.1.1600.000031
S684A684VgCagTa11B.1.160.170.001701
S684A684VgCagTa11B.1.160.280.002924
S684A684delGCA---11B.1.160.330.004425
S684A684TGcaAca11B.1.177.110.001698
S684A684VgCagTa11B.1.177.320.00135
S684A684SGcaTca11B.1.177.350.000691
S684A684VgCagTa11B.1.177.40.000211
S684A684SGcaTca11B.1.177.430.001477
S684A684SGcaTca11B.1.177.540.000606
S684A684TGcaAca11B.1.177.620.001192
S684A684VgCagTa11B.1.177.730.000566
S684A684SGcaTca11B.1.177.730.000566
S684A684VgCagTa11B.1.177.760.002494
S684A684VgCagTa11B.1.177.810.000189
S684A684TGcaAca11B.1.1820.007246
S684A684delGCA---11B.1.20.000009
S684A684VgCagTa11B.1.2100.002132
S684A684TGcaAca11B.1.2210.000071
S684A684SGcaTca11B.1.2420.018868
S684A684delGCA---11B.1.2430.00007
S684A684TGcaAca11B.1.2430.00007
S684A684AgcAgcG11B.1.2580.000067
S684A684VgCagTa11B.1.2640.012346
S684A684TGcaAca11B.1.2650.001271
S684A684VgCagTa11B.1.2930.0125
S684A684VgCagTa11B.1.30.002618
S684A684VgCagTa11B.1.3110.000275
S684A684PGcaCca11B.1.3130.006579
S684A684VgCagTa11B.1.3490.000715
S684A684SGcaTca11B.1.3490.000715
S684A684delGCA---11B.1.3510.00003
S684A684AgcAgcT11B.1.3510.00003
S684A684TGcAAcG11B.1.3510.00003
S684A684VgCagTa11B.1.360.000146
S684A684VgCagTa11B.1.36.120.009615
S684A684TGcaAca11B.1.36.170.000494
S684A684VgCagTa11B.1.36.290.000517
S684A684VgCagTa11B.1.3620.001541
S684A684SGcaTca11B.1.3910.001127
S684A684SGcaTca11B.1.4040.001302
S684A684VgCagTa11B.1.4160.001269
S684A684SGcaTca11B.1.4160.001269
S684A684SGcaTca11B.1.4280.00102
S684A684VgCagTa11B.1.4650.003802
S684A684AgcAgcG11B.1.466.20.000391
S684A684VgCagTa11B.1.466.20.000391
S684A684VgCagTa11B.1.4700.001404
S684A684TGcaAca11B.1.4740.001901
S684A684VgCagTa11B.1.499.10.111111
S684A684SGcaTca11B.1.5010.007353
S684A684EgCagAa11B.1.5050.004386
S684A684delGCA---11B.1.5250.000113
S684A684EgCagAa11B.1.5260.000024
S684A684VgCagTa11B.1.5270.003704
S684A684TGcaAca11B.1.5400.009709
S684A684VgCagTa11B.1.564.10.001577
S684A684AgcAgcT11B.1.5750.000303
S684A684TGcaAca11B.1.5950.000261
S684A684GgCagGa11B.1.5960.000087
S684A684AgcAgcC11B.1.6090.000479
S684A684TGcaAca11B.1.617.10.000129
S684A684GgCagGa11B.1.617.20.000004
S684A684VgCagTa11B.1.6200.000946
S684A684SGcaTca11B.1.6200.000946
S684A684delGCA---11B.1.6200.000946
S684A684EgCagAa11B.1.6250.002353
S684A684delGCA---11B.1.6270.00202
S684A684SGcaTca11B.1.6280.000352
S684A684VgCagTa11B.1.6280.000352
S684A684VgCagTa11B.1.6310.003367
S684A684delGCA---11B.1.6380.052632
S684A684TGcaAca11B.280.003279
S684A684TGcaAca11B.4.10.018868
S684A684VgCagTa11C.140.004329
S684A684VgCagTa11C.350.000774
S684A684TGcaAca11C.350.000774
S684A684delGCA---11C.370.000116
S684A684SGcaTca11C.400.027778
S684A684SGcaTca11D.30.005917
S684A684TGcaAca11L.30.003546
S684A684VgCagTa11N.50.001767
S684A684AgcAgcC11P.1.10.000318
S684A684VgCagTa11P.1.120.000484
S684A684delGCA---11P.1.130.000898
S684A684SGcaTca11P.1.150.000232
S684A684SGcaTca11P.1.160.000374
S684A684SGcaTca11P.1.170.000162
S684A684VgCagTa11P.1.20.001156
S684A684TGcaAca11P.30.001595
S684A684VgCagTa11Q.40.000455
S684A684VgCagTa11Q.80.000165
S684A684VgCagTa11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.