CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 682

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S682R682RsyncgGcgT772566060.85514623606-23608
S682R682RsyncgGcgA77255860.075857623606-23608
S682R682RsyncgGcgC77254130.053462823606-23608
S682R682RsynCggAgg77251200.01553423606-23608
S682R682LnonsyncGgcTg1921870.97395823606-23608
S682R682LnonsynCGgTTg19230.01562523606-23608
S682R682LnonsyncGGcTA19220.010416723606-23608
S682R682WnonsynCggTgg159159123606-23608
S682R682deldelCGG---7676123606-23608
S682R682QnonsyncGgcAg5757123606-23608
S682R682PnonsyncGgcCg1010123606-23608
S682R682del1delcGgc-g850.62523606-23608
S682R682del1delCgg-gg820.2523606-23608
S682R682del1delcGGc-T810.12523606-23608
S682R682GnonsynCggGgg630.523606-23608
S682R682GnonsynCgGGgA620.33333323606-23608
S682R682GnonsynCgGGgC610.16666723606-23608
S682R682VnonsynCGgGTg420.523606-23608
S682R682VnonsynCGGGTA420.523606-23608
S682R682XnonsynCGgTAg22123606-23608
S682R682MnonsynCGgATg11123606-23608
S682R682CnonsynCgGTgC11123606-23608
S682R682HnonsyncGGcAT11123606-23608

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S682R682RcgGcgT66067725All0.001263
S682R682RcgGcgA5867725All0.000112
S682R682RcgGcgC4137725All0.000079
S682R682RCggAgg1207725All0.000023
S682R682RcgGcgT14321713B.1.1.70.001282
S682R682RcgGcgC2091713B.1.1.70.000187
S682R682RcgGcgA571713B.1.1.70.000051
S682R682RCggAgg151713B.1.1.70.000013
S682R682RcgGcgT520616AY.40.000809
S682R682RcgGcgA68616AY.40.000106
S682R682RCggAgg25616AY.40.000039
S682R682RcgGcgC3616AY.40.000005
S682R682RcgGcgT475572B.1.617.20.001789
S682R682RcgGcgA91572B.1.617.20.000343
S682R682RcgGcgC4572B.1.617.20.000015
S682R682RCggAgg2572B.1.617.20.000008
S682R682RcgGcgT519529AY.440.003159
S682R682RcgGcgA7529AY.440.000043
S682R682RCggAgg3529AY.440.000018
S682R682RcgGcgT181242AY.430.000802
S682R682RcgGcgA56242AY.430.000248
S682R682RCggAgg5242AY.430.000022
S682R682LcGgcTg187192All0.000036
S682R682LCGgTTg3192All0.000001
S682R682LcGGcTA2192All0
S682R682RcgGcgT174174AY.200.006763
S682R682RcgGcgT174174B.1.1770.002291
S682R682RcgGcgT149162AY.1030.000925
S682R682RcgGcgA12162AY.1030.000075
S682R682RcgGcgC1162AY.1030.000006
S682R682WCggTgg159159All0.00003
S682R682RcgGcgT117155B.1.20.00103
S682R682RcgGcgA30155B.1.20.000264
S682R682RcgGcgC8155B.1.20.00007
S682R682RcgGcgT107150P.10.001686
S682R682RcgGcgA37150P.10.000583
S682R682RCggAgg6150P.10.000095
S682R682RcgGcgT136148B.10.001246
S682R682RcgGcgA7148B.10.000064
S682R682RcgGcgC4148B.10.000037
S682R682RCggAgg1148B.10.000009
S682R682RcgGcgT140140B.1.1.4200.140845
S682R682RcgGcgT134134AY.420.005391
S682R682RcgGcgT111118B.1.10.002014
S682R682RcgGcgA4118B.1.10.000073
S682R682RCggAgg2118B.1.10.000036
S682R682RcgGcgC1118B.1.10.000018
S682R682RcgGcgT102109AY.250.000614
S682R682RcgGcgA7109AY.250.000042
S682R682RcgGcgT102102B.1.5240.14346
S682R682RcgGcgT8791AY.1020.002307
S682R682RcgGcgC291AY.1020.000053
S682R682RcgGcgA291AY.1020.000053
S682R682RcgGcgC9091AY.1110.016484
S682R682RcgGcgT191AY.1110.000183
S682R682RcgGcgT6978AY.30.000686
S682R682RcgGcgA778AY.30.00007
S682R682RcgGcgC278AY.30.00002
S682R682RcgGcgT7777AY.290.001215
S682R682delCGG---7676All0.000015
S682R682RcgGcgT6465AY.4.50.00688
S682R682RcgGcgA165AY.4.50.000107
S682R682RcgGcgT5863B.1.1.2140.003217
S682R682RcgGcgA563B.1.1.2140.000277
S682R682QcGgcAg5757All0.000011
S682R682RcgGcgT5354AY.470.001649
S682R682RcgGcgA154AY.470.000031
S682R682RcgGcgT5153B.1.2580.003394
S682R682RcgGcgA253B.1.2580.000133
S682R682RcgGcgT2752AY.50.000558
S682R682RCggAgg2452AY.50.000496
S682R682RcgGcgA152AY.50.000021
S682R682RcgGcgT5151C.350.039474
S682R682RcgGcgT5050B.1.177.560.033378
S682R682RcgGcgT4446B.1.3510.001308
S682R682RCggAgg246B.1.3510.000059
S682R682RcgGcgA4545B.1.36.340.957447
S682R682RcgGcgT2845B.1.5260.000658
S682R682RCggAgg1645B.1.5260.000376
S682R682RcgGcgA145B.1.5260.000024
S682R682LcGgcTg3838B.1.617.20.000143
S682R682RcgGcgT3437AY.330.00227
S682R682RcgGcgA337AY.330.0002
S682R682RcgGcgT2837B.1.360.004085
S682R682RcgGcgA837B.1.360.001167
S682R682RcgGcgC137B.1.360.000146
S682R682RcgGcgC2337C.370.002669
S682R682RcgGcgT1037C.370.001161
S682R682RcgGcgA437C.370.000464
S682R682RcgGcgT3636AY.120.10.011557
S682R682RcgGcgT3333B.1.5960.002876
S682R682RcgGcgT3232AY.390.000791
S682R682RcgGcgT1830AY.1000.000828
S682R682RcgGcgA1130AY.1000.000506
S682R682RCggAgg130AY.1000.000046
S682R682RcgGcgT3030B.1.428.21
S682R682RcgGcgT2929B.1.1.2310.089783
S682R682RcgGcgT2828B.1.177.810.005301
S682R682RcgGcgT2425AY.16.10.011278
S682R682RcgGcgA125AY.16.10.00047
S682R682QcGgcAg2424B.1.3510.000713
S682R682RcgGcgT2424B.1.4290.000565
S682R682RcgGcgT2224B.1.5250.00249
S682R682RCggAgg224B.1.5250.000226
S682R682RcgGcgT2324P.1.140.001099
S682R682RcgGcgC124P.1.140.000048
S682R682WCggTgg2323B.1.1.70.000021
S682R682RcgGcgT2222AY.1200.000818
S682R682RcgGcgT2222W.10.191304
S682R682RcgGcgT1920AY.360.002816
S682R682RcgGcgA120AY.360.000148
S682R682RcgGcgT2020AY.9.20.000735
S682R682LcGgcTg2020B.1.1.70.000018
S682R682RcgGcgT2020B.1.3110.005491
S682R682RcgGcgA1320R.10.00117
S682R682RcgGcgT720R.10.00063
S682R682RcgGcgT1919AY.140.001672
S682R682LcGgcTg1919AY.40.00003
S682R682RcgGcgT1718AY.1190.0006
S682R682RCggAgg118AY.1190.000035
S682R682RcgGcgT1518AY.460.001561
S682R682RcgGcgA318AY.460.000312
S682R682RcgGcgT1818AY.60.00074
S682R682RcgGcgT1018AY.98.10.000484
S682R682RcgGcgC818AY.98.10.000387
S682R682RcgGcgT1818B.1.177.120.002731
S682R682WCggTgg1818B.1.3510.000535
S682R682RcgGcgT1718P.20.003173
S682R682RcgGcgC118P.20.000187
S682R682RcgGcgT1717B.1.3190.051829
S682R682RcgGcgT1616AY.1060.005358
S682R682RcgGcgT1016AY.1180.000626
S682R682RcgGcgA516AY.1180.000313
S682R682RCggAgg116AY.1180.000063
S682R682RcgGcgT1516AY.260.000425
S682R682RcgGcgC116AY.260.000028
S682R682RcgGcgT1516AY.610.001572
S682R682RcgGcgA116AY.610.000105
S682R682WCggTgg1616B.10.000147
S682R682RcgGcgT1516B.1.36.290.00776
S682R682RcgGcgC116B.1.36.290.000517
S682R682LcGgcTg1315A.10.003664
S682R682LCGgTTg215A.10.000564
S682R682RcgGcgT915AY.46.60.00065
S682R682RcgGcgC515AY.46.60.000361
S682R682RcgGcgA115AY.46.60.000072
S682R682RcgGcgT1515B.1.1.3980.048387
S682R682RcgGcgT1515B.1.177.600.003277
S682R682RcgGcgT1414B.1.258.140.013725
S682R682RcgGcgT1414P.1.100.003773
S682R682RcgGcgT1313A.210.036011
S682R682RcgGcgT1313AY.4.20.000282
S682R682RcgGcgC1313B.1.1.2050.048327
S682R682RcgGcgT1112AY.230.000767
S682R682RCggAgg112AY.230.00007
S682R682RcgGcgA612AY.450.00073
S682R682RcgGcgT512AY.450.000608
S682R682RcgGcgC112AY.450.000122
S682R682RcgGcgT1112B.1.1.5190.000437
S682R682RcgGcgC112B.1.1.5190.00004
S682R682RcgGcgT1112B.1.4270.000555
S682R682RCggAgg112B.1.4270.00005
S682R682RcgGcgT911B.1.1600.000281
S682R682RcgGcgA211B.1.1600.000062
S682R682RcgGcgT1011B.1.2210.00071
S682R682RCggAgg111B.1.2210.000071
S682R682RcgGcgT1111B.1.351.30.009641
S682R682RcgGcgT1111P.1.170.001779
S682R682PcGgcCg1010All0.000002
S682R682RcgGcgT1010AY.1170.000845
S682R682RcgGcgT810AY.980.000632
S682R682RcgGcgA210AY.980.000158
S682R682delCGG---1010B.10.000092
S682R682RcgGcgT1010B.1.1.2770.007587
S682R682RcgGcgT1010B.230.02924
S682R682RcgGcgT910C.160.009544
S682R682RcgGcgA110C.160.00106
S682R682RcgGcgT99AY.4.40.003682
S682R682RcgGcgT99AY.9.10.000754
S682R682RcgGcgT89B.1.1.10.002614
S682R682RcgGcgC19B.1.1.10.000327
S682R682RcgGcgT99B.1.1.2220.001836
S682R682RcgGcgT79B.1.2430.000487
S682R682RcgGcgA29B.1.2430.000139
S682R682RcgGcgT99D.20.000675
S682R682del1cGgc-g58All0.000001
S682R682del1Cgg-gg28All0
S682R682del1cGGc-T18All0
S682R682LcGgcTg88AY.1030.00005
S682R682LcGgcTg78AY.30.00007
S682R682LCGgTTg18AY.30.00001
S682R682RcgGcgT88AY.7.20.004474
S682R682RcgGcgC88B.1.1.2040.024316
S682R682RcgGcgA68B.1.1.3540.026316
S682R682RcgGcgT28B.1.1.3540.008772
S682R682delCGG---88B.1.1.70.000007
S682R682RcgGcgT88B.1.2360.016427
S682R682RcgGcgA88B.1.3350.082474
S682R682RcgGcgT88B.1.36.10.009122
S682R682RcgGcgT88Q.30.00116
S682R682LcGgcTg77AY.430.000031
S682R682RcgGcgT77AY.530.002013
S682R682RcgGcgT77AY.750.000392
S682R682delCGG---77B0.000895
S682R682LcGgcTg77B.10.000064
S682R682WCggTgg77B.1.10.000127
S682R682RcgGcgT77B.1.1.2980.006034
S682R682RcgGcgT77B.1.351.20.002118
S682R682RcgGcgT57B.1.617.10.000645
S682R682RcgGcgA27B.1.617.10.000258
S682R682RcgGcgT67P.1.120.002904
S682R682RcgGcgA17P.1.120.000484
S682R682GCggGgg36All0.000001
S682R682GCgGGgA26All0
S682R682GCgGGgC16All0
S682R682WCggTgg66AY.40.000009
S682R682RcgGcgC66AY.4.30.005051
S682R682delCGG---66AY.430.000027
S682R682RcgGcgT46AY.7.10.000451
S682R682RcgGcgA26AY.7.10.000225
S682R682RcgGcgA36AY.910.002191
S682R682RcgGcgT36AY.910.002191
S682R682RcgGcgT66AY.920.001724
S682R682RcgGcgC56B.1.1.100.005574
S682R682RcgGcgT16B.1.1.100.001115
S682R682RcgGcgT56B.1.1.250.002843
S682R682RCggAgg16B.1.1.250.000569
S682R682RcgGcgT66B.1.1.3440.064516
S682R682RcgGcgA46B.1.1.3480.003185
S682R682RcgGcgT16B.1.1.3480.000796
S682R682RcgGcgC16B.1.1.3480.000796
S682R682RcgGcgT66B.1.1390.004399
S682R682RcgGcgT66B.1.177.430.008863
S682R682RcgGcgA36B.1.5750.00091
S682R682RcgGcgT36B.1.5750.00091
S682R682WCggTgg66B.1.617.20.000023
S682R682RcgGcgT66B.1.621.10.003035
S682R682WCggTgg55AY.1030.000031
S682R682RcgGcgT45AY.1100.000451
S682R682RCggAgg15AY.1100.000113
S682R682RcgGcgT55AY.1160.001434
S682R682LcGgcTg55AY.250.00003
S682R682WCggTgg55AY.250.00003
S682R682RcgGcgT55AY.270.000324
S682R682RcgGcgA55AY.300.001979
S682R682WCggTgg55AY.430.000022
S682R682RcgGcgT55AY.46.40.000823
S682R682RcgGcgA35AY.70.000588
S682R682RcgGcgT25AY.70.000392
S682R682RcgGcgA55AY.890.02451
S682R682RcgGcgT45AY.99.20.000369
S682R682RcgGcgC15AY.99.20.000092
S682R682PcGgcCg55B.1.10.000091
S682R682RcgGcgT55B.1.1.280.001556
S682R682RcgGcgT45B.1.2340.000528
S682R682RcgGcgA15B.1.2340.000132
S682R682RcgGcgT55B.1.3960.003529
S682R682RcgGcgC35B.1.4040.003906
S682R682RcgGcgT25B.1.4040.002604
S682R682RcgGcgT55B.1.6210.000443
S682R682LcGGcTA240.111111
S682R682VCGgGTg240.111111
S682R682GCgGGgA240.111111
S682R682VCGGGTA240.111111
S682R682LcGgcTg240.111111
S682R682GCggGgg240.111111
S682R682VCGgGTg24All0
S682R682VCGGGTA24All0
S682R682RcgGcgT44AY.1010.001962
S682R682RcgGcgT34AY.1130.000427
S682R682RcgGcgA14AY.1130.000142
S682R682RcgGcgT44AY.120.001264
S682R682RcgGcgT44AY.1210.000541
S682R682LcGgcTg44AY.390.000099
S682R682RcgGcgT44AY.39.10.000158
S682R682LcGgcTg44AY.4.50.00043
S682R682WCggTgg44AY.440.000024
S682R682RcgGcgT24AY.5.30.000675
S682R682RcgGcgA24AY.5.30.000675
S682R682RcgGcgA44AY.5.40.001107
S682R682RcgGcgT44AY.550.00367
S682R682RcgGcgT44AY.840.00175
S682R682RcgGcgC44AY.850.001709
S682R682WCggTgg44AY.9.20.000147
S682R682RcgGcgT44AY.930.001092
S682R682RcgGcgT34B.1.1.1700.003741
S682R682RCggAgg14B.1.1.1700.001247
S682R682RcgGcgT34B.1.1.3170.001235
S682R682RcgGcgA14B.1.1.3170.000412
S682R682RcgGcgT34B.1.1.3180.000905
S682R682RcgGcgA14B.1.1.3180.000302
S682R682RcgGcgT44B.1.1.50.033333
S682R682LcGgcTg44B.1.1600.000125
S682R682RcgGcgT44B.1.177.210.000306
S682R682WCggTgg44B.1.20.000035
S682R682RcgGcgT44B.1.3690.001141
S682R682RcgGcgT44B.1.466.20.001565
S682R682delCGG---44B.1.617.20.000015
S682R682RcgGcgT34B.1.6370.000219
S682R682RcgGcgC14B.1.6370.000073
S682R682RcgGcgT44C.20.064516
S682R682RcgGcgT44Q.10.000505
S682R682QcGgcAg33A0.001161
S682R682RcgGcgT23AY.160.000759
S682R682RcgGcgA13AY.160.00038
S682R682LcGgcTg33AY.200.000117
S682R682delCGG---33AY.250.000018
S682R682RcgGcgT33AY.320.001597
S682R682RcgGcgT33AY.34.10.00153
S682R682QcGgcAg33AY.40.000005
S682R682WCggTgg33AY.60.000123
S682R682RcgGcgT33AY.620.001307
S682R682RcgGcgT33AY.90.000203
S682R682LcGgcTg33B0.000383
S682R682QcGgcAg33B.10.000027
S682R682delCGG---33B.1.10.000054
S682R682RcgGcgA33B.1.1.1710.011029
S682R682RcgGcgT33B.1.1.370.000579
S682R682RcgGcgT23B.1.1.500.001358
S682R682RcgGcgC13B.1.1.500.000679
S682R682QcGgcAg33B.1.1.70.000003
S682R682RcgGcgT33B.1.1.700.001023
S682R682WCggTgg33B.1.1600.000094
S682R682RcgGcgT33B.1.2650.003812
S682R682RcgGcgT33B.1.5610.001191
S682R682RcgGcgT33B.1.5950.000783
S682R682RcgGcgT33B.1.6090.001438
S682R682RcgGcgT33B.1.6300.015707
S682R682RcgGcgA33B.4.80.214286
S682R682RcgGcgA33N.50.0053
S682R682delCGG---33P.10.000047
S682R682delCGG---33P.1.150.000697
S682R682RcgGcgA220.111111
S682R682delCGG---220.111111
S682R682delCGG---22A0.000774
S682R682WCggTgg22A.10.000564
S682R682RcgGcgT22A.2.50.000998
S682R682RcgGcgT22A.230.021053
S682R682XCGgTAg22All0
S682R682RcgGcgT22AY.100.00106
S682R682RcgGcgT12AY.1140.000231
S682R682RcgGcgA12AY.1140.000231
S682R682LcGgcTg22AY.160.000759
S682R682LcGgcTg22AY.290.000032
S682R682WCggTgg22AY.3.10.000171
S682R682RcgGcgT22AY.3.10.000171
S682R682RcgGcgT22AY.350.000466
S682R682RcgGcgT12AY.380.000499
S682R682RCggAgg12AY.380.000499
S682R682QcGgcAg22AY.39.10.000079
S682R682RcgGcgT22AY.410.000588
S682R682LcGgcTg22AY.440.000012
S682R682RcgGcgT22AY.46.20.001271
S682R682RcgGcgT22AY.46.50.000397
S682R682LcGgcTg22AY.50.000041
S682R682RcgGcgT22AY.540.000191
S682R682RcgGcgT22AY.590.001059
S682R682RcgGcgT22AY.650.001066
S682R682LcGgcTg22AY.670.000929
S682R682RCggAgg12AY.670.000464
S682R682RcgGcgT12AY.670.000464
S682R682RcgGcgT22AY.700.000417
S682R682WCggTgg22AY.700.000417
S682R682RcgGcgA12AY.790.001211
S682R682RcgGcgT12AY.790.001211
S682R682LcGgcTg22AY.90.000135
S682R682LcGgcTg22AY.930.000546
S682R682WCggTgg22AY.980.000158
S682R682RcgGcgA12AY.990.001049
S682R682RcgGcgT12AY.990.001049
S682R682QcGgcAg22B0.000256
S682R682RcgGcgA12B0.000128
S682R682RcgGcgT12B0.000128
S682R682LcGgcTg22B.1.10.000036
S682R682QcGgcAg22B.1.10.000036
S682R682RcgGcgT22B.1.1.1740.006757
S682R682RcgGcgT22B.1.1.2190.01
S682R682RcgGcgT22B.1.1.3060.000877
S682R682RcgGcgT22B.1.1.3690.000892
S682R682RcgGcgT22B.1.1.3720.001377
S682R682PcGgcCg22B.1.1.70.000002
S682R682QcGgcAg22B.1.1600.000062
S682R682WCggTgg22B.1.1770.000026
S682R682RcgGcgT22B.1.177.100.001756
S682R682RcgGcgT22B.1.177.20.009091
S682R682RcgGcgT22B.1.177.40.000422
S682R682QcGgcAg22B.1.20.000018
S682R682LcGgcTg22B.1.20.000018
S682R682RcgGcgC12B.1.214.20.0006
S682R682RcgGcgT12B.1.214.20.0006
S682R682RcgGcgA12B.1.2600.003344
S682R682RcgGcgT12B.1.2600.003344
S682R682RCggAgg22B.1.30.005236
S682R682RcgGcgT22B.1.36.310.003503
S682R682RcgGcgT22B.1.3600.025316
S682R682RcgGcgT22B.1.3890.002004
S682R682RcgGcgT12B.1.3980.002976
S682R682RcgGcgA12B.1.3980.002976
S682R682RcgGcgA12B.1.4530.003236
S682R682RcgGcgT12B.1.4530.003236
S682R682delCGG---22B.1.4620.014493
S682R682del1Cgg-gg22B.1.4620.014493
S682R682RcgGcgT22B.1.5050.008772
S682R682WCggTgg22B.1.5260.000047
S682R682delCGG---22B.1.5960.000174
S682R682WCggTgg22B.1.6090.000959
S682R682RcgGcgT22B.1.619.10.001283
S682R682delCGG---22B.1.6210.000177
S682R682WCggTgg22D.20.00015
S682R682LcGgcTg22D.20.00015
S682R682WCggTgg22P.10.000032
S682R682QcGgcAg22P.1.150.000465
S682R682RcgGcgT22P.1.160.000748
S682R682RcgGcgT22P.1.70.000639
S682R682RcgGcgT22P.60.006289
S682R682RcgGcgT22Q.40.00091
S682R682WCggTgg110.055556
S682R682WCggTgg11A0.000387
S682R682delCGG---11A.10.000282
S682R682RcgGcgT11A.190.009434
S682R682RcgGcgT11A.2.20.001689
S682R682WCggTgg11A.2.20.001689
S682R682RcgGcgT11A.23.10.000704
S682R682RcgGcgA11AD.20.000219
S682R682MCGgATg11All0
S682R682CCgGTgC11All0
S682R682HcGGcAT11All0
S682R682RcgGcgT11AU.10.001266
S682R682RcgGcgA11AY.10.000396
S682R682LcGgcTg11AY.1000.000046
S682R682delCGG---11AY.1030.000006
S682R682LcGgcTg11AY.120.000316
S682R682LcGgcTg11AY.1200.000037
S682R682QcGgcAg11AY.1210.000135
S682R682RcgGcgT11AY.130.000161
S682R682RcgGcgT11AY.190.00114
S682R682RcgGcgT11AY.20.000356
S682R682LcGgcTg11AY.230.00007
S682R682RcgGcgT11AY.23.10.000417
S682R682RCggAgg11AY.240.000431
S682R682LcGgcTg11AY.260.000028
S682R682WCggTgg11AY.260.000028
S682R682RcgGcgT11AY.280.00189
S682R682WCggTgg11AY.290.000016
S682R682QcGgcAg11AY.290.000016
S682R682WCggTgg11AY.30.00001
S682R682QcGgcAg11AY.30.00001
S682R682delCGG---11AY.30.00001
S682R682GCgGGgC11AY.300.000396
S682R682LcGgcTg11AY.340.000097
S682R682RcgGcgT11AY.340.000097
S682R682WCggTgg11AY.360.000148
S682R682WCggTgg11AY.390.000025
S682R682LcGgcTg11AY.39.10.00004
S682R682PcGgcCg11AY.40.000002
S682R682del1cGgc-g11AY.40.000002
S682R682RcgGcgT11AY.4.10.000737
S682R682LcGgcTg11AY.4.20.000022
S682R682WCggTgg11AY.4.20.000022
S682R682LcGgcTg11AY.410.000294
S682R682LcGgcTg11AY.420.00004
S682R682PcGgcCg11AY.440.000006
S682R682delCGG---11AY.46.20.000635
S682R682LcGgcTg11AY.46.50.000198
S682R682LcGgcTg11AY.470.000031
S682R682WCggTgg11AY.480.000465
S682R682RcgGcgT11AY.480.000465
S682R682LcGgcTg11AY.5.40.000277
S682R682RcgGcgA11AY.580.000907
S682R682WCggTgg11AY.610.000105
S682R682LcGgcTg11AY.630.000387
S682R682MCGgATg11AY.670.000464
S682R682RcgGcgT11AY.680.000274
S682R682RcgGcgT11AY.690.000187
S682R682LcGgcTg11AY.7.20.000559
S682R682RcgGcgT11AY.730.000665
S682R682RcgGcgT11AY.740.000116
S682R682WCggTgg11AY.750.000056
S682R682QcGgcAg11AY.75.10.00018
S682R682RcgGcgA11AY.770.001127
S682R682RcgGcgT11AY.780.001541
S682R682LcGgcTg11AY.840.000437
S682R682delCGG---11AY.840.000437
S682R682RcgGcgA11AY.870.000833
S682R682RcgGcgT11AY.880.000884
S682R682del1cGgc-g11AY.90.000068
S682R682delCGG---11AY.9.20.000037
S682R682LcGgcTg11AY.980.000079
S682R682delCGG---11AY.990.001049
S682R682RcgGcgT11AY.99.10.001553
S682R682RcgGcgT11AZ.20.000821
S682R682HcGGcAT11AZ.2.10.00813
S682R682WCggTgg11B0.000128
S682R682del1cGGc-T11B.10.000009
S682R682XCGgTAg11B.10.000009
S682R682XCGgTAg11B.1.10.000018
S682R682QcGgcAg11B.1.1.10.000327
S682R682RcgGcgT11B.1.1.1110.014706
S682R682WCggTgg11B.1.1.1350.004695
S682R682WCggTgg11B.1.1.1890.001513
S682R682RcgGcgT11B.1.1.1960.005714
S682R682RcgGcgT11B.1.1.2160.00089
S682R682WCggTgg11B.1.1.2220.000204
S682R682RcgGcgT11B.1.1.2360.006897
S682R682RcgGcgT11B.1.1.2410.00207
S682R682LcGgcTg11B.1.1.2690.001353
S682R682RcgGcgT11B.1.1.270.00565
S682R682RcgGcgT11B.1.1.2710.055556
S682R682RcgGcgT11B.1.1.2730.006757
S682R682RcgGcgT11B.1.1.2790.001121
S682R682RcgGcgA11B.1.1.2860.002899
S682R682RcgGcgT11B.1.1.2910.000742
S682R682RcgGcgT11B.1.1.2970.002237
S682R682RcgGcgT11B.1.1.3040.002809
S682R682WCggTgg11B.1.1.3110.000358
S682R682RcgGcgT11B.1.1.3120.001912
S682R682RcgGcgT11B.1.1.3220.008772
S682R682RcgGcgT11B.1.1.330.000421
S682R682RcgGcgT11B.1.1.3680.003086
S682R682WCggTgg11B.1.1.370.000193
S682R682delCGG---11B.1.1.3720.000689
S682R682RcgGcgT11B.1.1.3740.002375
S682R682RcgGcgT11B.1.1.3880.045455
S682R682RcgGcgT11B.1.1.390.00051
S682R682RCggAgg11B.1.1.4160.000905
S682R682RcgGcgT11B.1.1.4340.000349
S682R682WCggTgg11B.1.1.4530.008475
S682R682WCggTgg11B.1.1.5190.00004
S682R682RCggAgg11B.1.1.580.005376
S682R682RcgGcgT11B.1.1.630.000386
S682R682del1cGgc-g11B.1.1.70.000001
S682R682delCGG---11B.1.1600.000031
S682R682RcgGcgT11B.1.160.110.005714
S682R682delCGG---11B.1.160.330.004425
S682R682RcgGcgT11B.1.177.150.000631
S682R682RcgGcgT11B.1.177.160.000664
S682R682RcgGcgT11B.1.177.170.000821
S682R682RcgGcgT11B.1.177.310.011494
S682R682RcgGcgT11B.1.177.320.00135
S682R682WCggTgg11B.1.177.440.000519
S682R682RCggAgg11B.1.177.540.000606
S682R682RcgGcgT11B.1.177.570.000281
S682R682RcgGcgT11B.1.177.650.000665
S682R682RcgGcgT11B.1.177.820.000477
S682R682RcgGcgT11B.1.177.830.001481
S682R682RcgGcgT11B.1.177.860.000183
S682R682delCGG---11B.1.20.000009
S682R682RcgGcgT11B.1.2140.003663
S682R682GCggGgg11B.1.2340.000132
S682R682delCGG---11B.1.2430.00007
S682R682RcgGcgT11B.1.258.110.000396
S682R682RcgGcgT11B.1.2640.012346
S682R682LcGgcTg11B.1.3290.000608
S682R682RcgGcgT11B.1.3290.000608
S682R682LcGgcTg11B.1.3510.00003
S682R682PcGgcCg11B.1.3510.00003
S682R682delCGG---11B.1.3510.00003
S682R682RcgGcgT11B.1.36.100.004785
S682R682RcgGcgT11B.1.36.190.009259
S682R682del1cGgc-g11B.1.36.20.010753
S682R682WCggTgg11B.1.36.290.000517
S682R682RcgGcgT11B.1.36.360.000602
S682R682RcgGcgT11B.1.36.90.003215
S682R682RcgGcgT11B.1.3610.001289
S682R682RcgGcgT11B.1.3620.001541
S682R682RcgGcgT11B.1.3670.000792
S682R682LcGgcTg11B.1.3670.000792
S682R682CCgGTgC11B.1.3770.004566
S682R682RcgGcgT11B.1.3950.007042
S682R682WCggTgg11B.1.3960.000706
S682R682WCggTgg11B.1.4130.004255
S682R682RcgGcgT11B.1.4130.004255
S682R682QcGgcAg11B.1.4160.001269
S682R682RcgGcgA11B.1.4250.002994
S682R682LcGgcTg11B.1.4270.00005
S682R682LcGgcTg11B.1.4290.000024
S682R682RcgGcgT11B.1.438.10.000107
S682R682RcgGcgA11B.1.4590.004082
S682R682RcgGcgT11B.1.4620.007246
S682R682RcgGcgA11B.1.4680.005714
S682R682RcgGcgT11B.1.4990.00105
S682R682RcgGcgT11B.1.499.10.111111
S682R682delCGG---11B.1.5250.000113
S682R682QcGgcAg11B.1.5440.006024
S682R682WCggTgg11B.1.5520.015152
S682R682RcgGcgT11B.1.5640.000426
S682R682WCggTgg11B.1.5960.000087
S682R682RcgGcgT11B.1.6180.004032
S682R682WCggTgg11B.1.6190.000871
S682R682delCGG---11B.1.6200.000946
S682R682WCggTgg11B.1.6210.000089
S682R682RcgGcgT11B.1.6250.002353
S682R682delCGG---11B.1.6270.00202
S682R682RcgGcgT11B.1.6280.000352
S682R682WCggTgg11B.1.6370.000073
S682R682delCGG---11B.1.6380.052632
S682R682RcgGcgT11B.1.970.025641
S682R682WCggTgg11B.280.003279
S682R682WCggTgg11B.40.002208
S682R682RcgGcgT11B.4.70.010101
S682R682RcgGcgT11B.60.00091
S682R682RcgGcgT11B.6.60.000889
S682R682RcgGcgC11C.1.20.004255
S682R682delCGG---11C.370.000116
S682R682del1cGgc-g11D.20.000075
S682R682RcgGcgT11L.30.003546
S682R682delCGG---11P.1.130.000898
S682R682RcgGcgT11P.1.150.000232
S682R682RcgGcgT11P.1.20.001156
S682R682QcGgcAg11Q.30.000145
S682R682QcGgcAg11R.10.00009
S682R682WCggTgg11W.10.008696
S682R682RcgGcgA11XA0.022222

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.