CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 682 | R682R | syn | cgG | cgT | 7725 | 6606 | 0.855146 | 23606-23608 | |
S | 682 | R682R | syn | cgG | cgA | 7725 | 586 | 0.0758576 | 23606-23608 | |
S | 682 | R682R | syn | cgG | cgC | 7725 | 413 | 0.0534628 | 23606-23608 | |
S | 682 | R682R | syn | Cgg | Agg | 7725 | 120 | 0.015534 | 23606-23608 | |
S | 682 | R682L | nonsyn | cGg | cTg | 192 | 187 | 0.973958 | 23606-23608 | |
S | 682 | R682L | nonsyn | CGg | TTg | 192 | 3 | 0.015625 | 23606-23608 | |
S | 682 | R682L | nonsyn | cGG | cTA | 192 | 2 | 0.0104167 | 23606-23608 | |
S | 682 | R682W | nonsyn | Cgg | Tgg | 159 | 159 | 1 | 23606-23608 | |
S | 682 | R682del | del | CGG | --- | 76 | 76 | 1 | 23606-23608 | |
S | 682 | R682Q | nonsyn | cGg | cAg | 57 | 57 | 1 | 23606-23608 | |
S | 682 | R682P | nonsyn | cGg | cCg | 10 | 10 | 1 | 23606-23608 | |
S | 682 | R682del1 | del | cGg | c-g | 8 | 5 | 0.625 | 23606-23608 | |
S | 682 | R682del1 | del | Cgg | -gg | 8 | 2 | 0.25 | 23606-23608 | |
S | 682 | R682del1 | del | cGG | c-T | 8 | 1 | 0.125 | 23606-23608 | |
S | 682 | R682G | nonsyn | Cgg | Ggg | 6 | 3 | 0.5 | 23606-23608 | |
S | 682 | R682G | nonsyn | CgG | GgA | 6 | 2 | 0.333333 | 23606-23608 | |
S | 682 | R682G | nonsyn | CgG | GgC | 6 | 1 | 0.166667 | 23606-23608 | |
S | 682 | R682V | nonsyn | CGg | GTg | 4 | 2 | 0.5 | 23606-23608 | |
S | 682 | R682V | nonsyn | CGG | GTA | 4 | 2 | 0.5 | 23606-23608 | |
S | 682 | R682X | nonsyn | CGg | TAg | 2 | 2 | 1 | 23606-23608 | |
S | 682 | R682M | nonsyn | CGg | ATg | 1 | 1 | 1 | 23606-23608 | |
S | 682 | R682C | nonsyn | CgG | TgC | 1 | 1 | 1 | 23606-23608 | |
S | 682 | R682H | nonsyn | cGG | cAT | 1 | 1 | 1 | 23606-23608 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 682 | R682R | cgG | cgT | 6606 | 7725 | All | 0.001263 |
S | 682 | R682R | cgG | cgA | 586 | 7725 | All | 0.000112 |
S | 682 | R682R | cgG | cgC | 413 | 7725 | All | 0.000079 |
S | 682 | R682R | Cgg | Agg | 120 | 7725 | All | 0.000023 |
S | 682 | R682R | cgG | cgT | 1432 | 1713 | B.1.1.7 | 0.001282 |
S | 682 | R682R | cgG | cgC | 209 | 1713 | B.1.1.7 | 0.000187 |
S | 682 | R682R | cgG | cgA | 57 | 1713 | B.1.1.7 | 0.000051 |
S | 682 | R682R | Cgg | Agg | 15 | 1713 | B.1.1.7 | 0.000013 |
S | 682 | R682R | cgG | cgT | 520 | 616 | AY.4 | 0.000809 |
S | 682 | R682R | cgG | cgA | 68 | 616 | AY.4 | 0.000106 |
S | 682 | R682R | Cgg | Agg | 25 | 616 | AY.4 | 0.000039 |
S | 682 | R682R | cgG | cgC | 3 | 616 | AY.4 | 0.000005 |
S | 682 | R682R | cgG | cgT | 475 | 572 | B.1.617.2 | 0.001789 |
S | 682 | R682R | cgG | cgA | 91 | 572 | B.1.617.2 | 0.000343 |
S | 682 | R682R | cgG | cgC | 4 | 572 | B.1.617.2 | 0.000015 |
S | 682 | R682R | Cgg | Agg | 2 | 572 | B.1.617.2 | 0.000008 |
S | 682 | R682R | cgG | cgT | 519 | 529 | AY.44 | 0.003159 |
S | 682 | R682R | cgG | cgA | 7 | 529 | AY.44 | 0.000043 |
S | 682 | R682R | Cgg | Agg | 3 | 529 | AY.44 | 0.000018 |
S | 682 | R682R | cgG | cgT | 181 | 242 | AY.43 | 0.000802 |
S | 682 | R682R | cgG | cgA | 56 | 242 | AY.43 | 0.000248 |
S | 682 | R682R | Cgg | Agg | 5 | 242 | AY.43 | 0.000022 |
S | 682 | R682L | cGg | cTg | 187 | 192 | All | 0.000036 |
S | 682 | R682L | CGg | TTg | 3 | 192 | All | 0.000001 |
S | 682 | R682L | cGG | cTA | 2 | 192 | All | 0 |
S | 682 | R682R | cgG | cgT | 174 | 174 | AY.20 | 0.006763 |
S | 682 | R682R | cgG | cgT | 174 | 174 | B.1.177 | 0.002291 |
S | 682 | R682R | cgG | cgT | 149 | 162 | AY.103 | 0.000925 |
S | 682 | R682R | cgG | cgA | 12 | 162 | AY.103 | 0.000075 |
S | 682 | R682R | cgG | cgC | 1 | 162 | AY.103 | 0.000006 |
S | 682 | R682W | Cgg | Tgg | 159 | 159 | All | 0.00003 |
S | 682 | R682R | cgG | cgT | 117 | 155 | B.1.2 | 0.00103 |
S | 682 | R682R | cgG | cgA | 30 | 155 | B.1.2 | 0.000264 |
S | 682 | R682R | cgG | cgC | 8 | 155 | B.1.2 | 0.00007 |
S | 682 | R682R | cgG | cgT | 107 | 150 | P.1 | 0.001686 |
S | 682 | R682R | cgG | cgA | 37 | 150 | P.1 | 0.000583 |
S | 682 | R682R | Cgg | Agg | 6 | 150 | P.1 | 0.000095 |
S | 682 | R682R | cgG | cgT | 136 | 148 | B.1 | 0.001246 |
S | 682 | R682R | cgG | cgA | 7 | 148 | B.1 | 0.000064 |
S | 682 | R682R | cgG | cgC | 4 | 148 | B.1 | 0.000037 |
S | 682 | R682R | Cgg | Agg | 1 | 148 | B.1 | 0.000009 |
S | 682 | R682R | cgG | cgT | 140 | 140 | B.1.1.420 | 0.140845 |
S | 682 | R682R | cgG | cgT | 134 | 134 | AY.42 | 0.005391 |
S | 682 | R682R | cgG | cgT | 111 | 118 | B.1.1 | 0.002014 |
S | 682 | R682R | cgG | cgA | 4 | 118 | B.1.1 | 0.000073 |
S | 682 | R682R | Cgg | Agg | 2 | 118 | B.1.1 | 0.000036 |
S | 682 | R682R | cgG | cgC | 1 | 118 | B.1.1 | 0.000018 |
S | 682 | R682R | cgG | cgT | 102 | 109 | AY.25 | 0.000614 |
S | 682 | R682R | cgG | cgA | 7 | 109 | AY.25 | 0.000042 |
S | 682 | R682R | cgG | cgT | 102 | 102 | B.1.524 | 0.14346 |
S | 682 | R682R | cgG | cgT | 87 | 91 | AY.102 | 0.002307 |
S | 682 | R682R | cgG | cgC | 2 | 91 | AY.102 | 0.000053 |
S | 682 | R682R | cgG | cgA | 2 | 91 | AY.102 | 0.000053 |
S | 682 | R682R | cgG | cgC | 90 | 91 | AY.111 | 0.016484 |
S | 682 | R682R | cgG | cgT | 1 | 91 | AY.111 | 0.000183 |
S | 682 | R682R | cgG | cgT | 69 | 78 | AY.3 | 0.000686 |
S | 682 | R682R | cgG | cgA | 7 | 78 | AY.3 | 0.00007 |
S | 682 | R682R | cgG | cgC | 2 | 78 | AY.3 | 0.00002 |
S | 682 | R682R | cgG | cgT | 77 | 77 | AY.29 | 0.001215 |
S | 682 | R682del | CGG | --- | 76 | 76 | All | 0.000015 |
S | 682 | R682R | cgG | cgT | 64 | 65 | AY.4.5 | 0.00688 |
S | 682 | R682R | cgG | cgA | 1 | 65 | AY.4.5 | 0.000107 |
S | 682 | R682R | cgG | cgT | 58 | 63 | B.1.1.214 | 0.003217 |
S | 682 | R682R | cgG | cgA | 5 | 63 | B.1.1.214 | 0.000277 |
S | 682 | R682Q | cGg | cAg | 57 | 57 | All | 0.000011 |
S | 682 | R682R | cgG | cgT | 53 | 54 | AY.47 | 0.001649 |
S | 682 | R682R | cgG | cgA | 1 | 54 | AY.47 | 0.000031 |
S | 682 | R682R | cgG | cgT | 51 | 53 | B.1.258 | 0.003394 |
S | 682 | R682R | cgG | cgA | 2 | 53 | B.1.258 | 0.000133 |
S | 682 | R682R | cgG | cgT | 27 | 52 | AY.5 | 0.000558 |
S | 682 | R682R | Cgg | Agg | 24 | 52 | AY.5 | 0.000496 |
S | 682 | R682R | cgG | cgA | 1 | 52 | AY.5 | 0.000021 |
S | 682 | R682R | cgG | cgT | 51 | 51 | C.35 | 0.039474 |
S | 682 | R682R | cgG | cgT | 50 | 50 | B.1.177.56 | 0.033378 |
S | 682 | R682R | cgG | cgT | 44 | 46 | B.1.351 | 0.001308 |
S | 682 | R682R | Cgg | Agg | 2 | 46 | B.1.351 | 0.000059 |
S | 682 | R682R | cgG | cgA | 45 | 45 | B.1.36.34 | 0.957447 |
S | 682 | R682R | cgG | cgT | 28 | 45 | B.1.526 | 0.000658 |
S | 682 | R682R | Cgg | Agg | 16 | 45 | B.1.526 | 0.000376 |
S | 682 | R682R | cgG | cgA | 1 | 45 | B.1.526 | 0.000024 |
S | 682 | R682L | cGg | cTg | 38 | 38 | B.1.617.2 | 0.000143 |
S | 682 | R682R | cgG | cgT | 34 | 37 | AY.33 | 0.00227 |
S | 682 | R682R | cgG | cgA | 3 | 37 | AY.33 | 0.0002 |
S | 682 | R682R | cgG | cgT | 28 | 37 | B.1.36 | 0.004085 |
S | 682 | R682R | cgG | cgA | 8 | 37 | B.1.36 | 0.001167 |
S | 682 | R682R | cgG | cgC | 1 | 37 | B.1.36 | 0.000146 |
S | 682 | R682R | cgG | cgC | 23 | 37 | C.37 | 0.002669 |
S | 682 | R682R | cgG | cgT | 10 | 37 | C.37 | 0.001161 |
S | 682 | R682R | cgG | cgA | 4 | 37 | C.37 | 0.000464 |
S | 682 | R682R | cgG | cgT | 36 | 36 | AY.120.1 | 0.011557 |
S | 682 | R682R | cgG | cgT | 33 | 33 | B.1.596 | 0.002876 |
S | 682 | R682R | cgG | cgT | 32 | 32 | AY.39 | 0.000791 |
S | 682 | R682R | cgG | cgT | 18 | 30 | AY.100 | 0.000828 |
S | 682 | R682R | cgG | cgA | 11 | 30 | AY.100 | 0.000506 |
S | 682 | R682R | Cgg | Agg | 1 | 30 | AY.100 | 0.000046 |
S | 682 | R682R | cgG | cgT | 30 | 30 | B.1.428.2 | 1 |
S | 682 | R682R | cgG | cgT | 29 | 29 | B.1.1.231 | 0.089783 |
S | 682 | R682R | cgG | cgT | 28 | 28 | B.1.177.81 | 0.005301 |
S | 682 | R682R | cgG | cgT | 24 | 25 | AY.16.1 | 0.011278 |
S | 682 | R682R | cgG | cgA | 1 | 25 | AY.16.1 | 0.00047 |
S | 682 | R682Q | cGg | cAg | 24 | 24 | B.1.351 | 0.000713 |
S | 682 | R682R | cgG | cgT | 24 | 24 | B.1.429 | 0.000565 |
S | 682 | R682R | cgG | cgT | 22 | 24 | B.1.525 | 0.00249 |
S | 682 | R682R | Cgg | Agg | 2 | 24 | B.1.525 | 0.000226 |
S | 682 | R682R | cgG | cgT | 23 | 24 | P.1.14 | 0.001099 |
S | 682 | R682R | cgG | cgC | 1 | 24 | P.1.14 | 0.000048 |
S | 682 | R682W | Cgg | Tgg | 23 | 23 | B.1.1.7 | 0.000021 |
S | 682 | R682R | cgG | cgT | 22 | 22 | AY.120 | 0.000818 |
S | 682 | R682R | cgG | cgT | 22 | 22 | W.1 | 0.191304 |
S | 682 | R682R | cgG | cgT | 19 | 20 | AY.36 | 0.002816 |
S | 682 | R682R | cgG | cgA | 1 | 20 | AY.36 | 0.000148 |
S | 682 | R682R | cgG | cgT | 20 | 20 | AY.9.2 | 0.000735 |
S | 682 | R682L | cGg | cTg | 20 | 20 | B.1.1.7 | 0.000018 |
S | 682 | R682R | cgG | cgT | 20 | 20 | B.1.311 | 0.005491 |
S | 682 | R682R | cgG | cgA | 13 | 20 | R.1 | 0.00117 |
S | 682 | R682R | cgG | cgT | 7 | 20 | R.1 | 0.00063 |
S | 682 | R682R | cgG | cgT | 19 | 19 | AY.14 | 0.001672 |
S | 682 | R682L | cGg | cTg | 19 | 19 | AY.4 | 0.00003 |
S | 682 | R682R | cgG | cgT | 17 | 18 | AY.119 | 0.0006 |
S | 682 | R682R | Cgg | Agg | 1 | 18 | AY.119 | 0.000035 |
S | 682 | R682R | cgG | cgT | 15 | 18 | AY.46 | 0.001561 |
S | 682 | R682R | cgG | cgA | 3 | 18 | AY.46 | 0.000312 |
S | 682 | R682R | cgG | cgT | 18 | 18 | AY.6 | 0.00074 |
S | 682 | R682R | cgG | cgT | 10 | 18 | AY.98.1 | 0.000484 |
S | 682 | R682R | cgG | cgC | 8 | 18 | AY.98.1 | 0.000387 |
S | 682 | R682R | cgG | cgT | 18 | 18 | B.1.177.12 | 0.002731 |
S | 682 | R682W | Cgg | Tgg | 18 | 18 | B.1.351 | 0.000535 |
S | 682 | R682R | cgG | cgT | 17 | 18 | P.2 | 0.003173 |
S | 682 | R682R | cgG | cgC | 1 | 18 | P.2 | 0.000187 |
S | 682 | R682R | cgG | cgT | 17 | 17 | B.1.319 | 0.051829 |
S | 682 | R682R | cgG | cgT | 16 | 16 | AY.106 | 0.005358 |
S | 682 | R682R | cgG | cgT | 10 | 16 | AY.118 | 0.000626 |
S | 682 | R682R | cgG | cgA | 5 | 16 | AY.118 | 0.000313 |
S | 682 | R682R | Cgg | Agg | 1 | 16 | AY.118 | 0.000063 |
S | 682 | R682R | cgG | cgT | 15 | 16 | AY.26 | 0.000425 |
S | 682 | R682R | cgG | cgC | 1 | 16 | AY.26 | 0.000028 |
S | 682 | R682R | cgG | cgT | 15 | 16 | AY.61 | 0.001572 |
S | 682 | R682R | cgG | cgA | 1 | 16 | AY.61 | 0.000105 |
S | 682 | R682W | Cgg | Tgg | 16 | 16 | B.1 | 0.000147 |
S | 682 | R682R | cgG | cgT | 15 | 16 | B.1.36.29 | 0.00776 |
S | 682 | R682R | cgG | cgC | 1 | 16 | B.1.36.29 | 0.000517 |
S | 682 | R682L | cGg | cTg | 13 | 15 | A.1 | 0.003664 |
S | 682 | R682L | CGg | TTg | 2 | 15 | A.1 | 0.000564 |
S | 682 | R682R | cgG | cgT | 9 | 15 | AY.46.6 | 0.00065 |
S | 682 | R682R | cgG | cgC | 5 | 15 | AY.46.6 | 0.000361 |
S | 682 | R682R | cgG | cgA | 1 | 15 | AY.46.6 | 0.000072 |
S | 682 | R682R | cgG | cgT | 15 | 15 | B.1.1.398 | 0.048387 |
S | 682 | R682R | cgG | cgT | 15 | 15 | B.1.177.60 | 0.003277 |
S | 682 | R682R | cgG | cgT | 14 | 14 | B.1.258.14 | 0.013725 |
S | 682 | R682R | cgG | cgT | 14 | 14 | P.1.10 | 0.003773 |
S | 682 | R682R | cgG | cgT | 13 | 13 | A.21 | 0.036011 |
S | 682 | R682R | cgG | cgT | 13 | 13 | AY.4.2 | 0.000282 |
S | 682 | R682R | cgG | cgC | 13 | 13 | B.1.1.205 | 0.048327 |
S | 682 | R682R | cgG | cgT | 11 | 12 | AY.23 | 0.000767 |
S | 682 | R682R | Cgg | Agg | 1 | 12 | AY.23 | 0.00007 |
S | 682 | R682R | cgG | cgA | 6 | 12 | AY.45 | 0.00073 |
S | 682 | R682R | cgG | cgT | 5 | 12 | AY.45 | 0.000608 |
S | 682 | R682R | cgG | cgC | 1 | 12 | AY.45 | 0.000122 |
S | 682 | R682R | cgG | cgT | 11 | 12 | B.1.1.519 | 0.000437 |
S | 682 | R682R | cgG | cgC | 1 | 12 | B.1.1.519 | 0.00004 |
S | 682 | R682R | cgG | cgT | 11 | 12 | B.1.427 | 0.000555 |
S | 682 | R682R | Cgg | Agg | 1 | 12 | B.1.427 | 0.00005 |
S | 682 | R682R | cgG | cgT | 9 | 11 | B.1.160 | 0.000281 |
S | 682 | R682R | cgG | cgA | 2 | 11 | B.1.160 | 0.000062 |
S | 682 | R682R | cgG | cgT | 10 | 11 | B.1.221 | 0.00071 |
S | 682 | R682R | Cgg | Agg | 1 | 11 | B.1.221 | 0.000071 |
S | 682 | R682R | cgG | cgT | 11 | 11 | B.1.351.3 | 0.009641 |
S | 682 | R682R | cgG | cgT | 11 | 11 | P.1.17 | 0.001779 |
S | 682 | R682P | cGg | cCg | 10 | 10 | All | 0.000002 |
S | 682 | R682R | cgG | cgT | 10 | 10 | AY.117 | 0.000845 |
S | 682 | R682R | cgG | cgT | 8 | 10 | AY.98 | 0.000632 |
S | 682 | R682R | cgG | cgA | 2 | 10 | AY.98 | 0.000158 |
S | 682 | R682del | CGG | --- | 10 | 10 | B.1 | 0.000092 |
S | 682 | R682R | cgG | cgT | 10 | 10 | B.1.1.277 | 0.007587 |
S | 682 | R682R | cgG | cgT | 10 | 10 | B.23 | 0.02924 |
S | 682 | R682R | cgG | cgT | 9 | 10 | C.16 | 0.009544 |
S | 682 | R682R | cgG | cgA | 1 | 10 | C.16 | 0.00106 |
S | 682 | R682R | cgG | cgT | 9 | 9 | AY.4.4 | 0.003682 |
S | 682 | R682R | cgG | cgT | 9 | 9 | AY.9.1 | 0.000754 |
S | 682 | R682R | cgG | cgT | 8 | 9 | B.1.1.1 | 0.002614 |
S | 682 | R682R | cgG | cgC | 1 | 9 | B.1.1.1 | 0.000327 |
S | 682 | R682R | cgG | cgT | 9 | 9 | B.1.1.222 | 0.001836 |
S | 682 | R682R | cgG | cgT | 7 | 9 | B.1.243 | 0.000487 |
S | 682 | R682R | cgG | cgA | 2 | 9 | B.1.243 | 0.000139 |
S | 682 | R682R | cgG | cgT | 9 | 9 | D.2 | 0.000675 |
S | 682 | R682del1 | cGg | c-g | 5 | 8 | All | 0.000001 |
S | 682 | R682del1 | Cgg | -gg | 2 | 8 | All | 0 |
S | 682 | R682del1 | cGG | c-T | 1 | 8 | All | 0 |
S | 682 | R682L | cGg | cTg | 8 | 8 | AY.103 | 0.00005 |
S | 682 | R682L | cGg | cTg | 7 | 8 | AY.3 | 0.00007 |
S | 682 | R682L | CGg | TTg | 1 | 8 | AY.3 | 0.00001 |
S | 682 | R682R | cgG | cgT | 8 | 8 | AY.7.2 | 0.004474 |
S | 682 | R682R | cgG | cgC | 8 | 8 | B.1.1.204 | 0.024316 |
S | 682 | R682R | cgG | cgA | 6 | 8 | B.1.1.354 | 0.026316 |
S | 682 | R682R | cgG | cgT | 2 | 8 | B.1.1.354 | 0.008772 |
S | 682 | R682del | CGG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
S | 682 | R682R | cgG | cgT | 8 | 8 | B.1.236 | 0.016427 |
S | 682 | R682R | cgG | cgA | 8 | 8 | B.1.335 | 0.082474 |
S | 682 | R682R | cgG | cgT | 8 | 8 | B.1.36.1 | 0.009122 |
S | 682 | R682R | cgG | cgT | 8 | 8 | Q.3 | 0.00116 |
S | 682 | R682L | cGg | cTg | 7 | 7 | AY.43 | 0.000031 |
S | 682 | R682R | cgG | cgT | 7 | 7 | AY.53 | 0.002013 |
S | 682 | R682R | cgG | cgT | 7 | 7 | AY.75 | 0.000392 |
S | 682 | R682del | CGG | --- | 7 | 7 | B | 0.000895 |
S | 682 | R682L | cGg | cTg | 7 | 7 | B.1 | 0.000064 |
S | 682 | R682W | Cgg | Tgg | 7 | 7 | B.1.1 | 0.000127 |
S | 682 | R682R | cgG | cgT | 7 | 7 | B.1.1.298 | 0.006034 |
S | 682 | R682R | cgG | cgT | 7 | 7 | B.1.351.2 | 0.002118 |
S | 682 | R682R | cgG | cgT | 5 | 7 | B.1.617.1 | 0.000645 |
S | 682 | R682R | cgG | cgA | 2 | 7 | B.1.617.1 | 0.000258 |
S | 682 | R682R | cgG | cgT | 6 | 7 | P.1.12 | 0.002904 |
S | 682 | R682R | cgG | cgA | 1 | 7 | P.1.12 | 0.000484 |
S | 682 | R682G | Cgg | Ggg | 3 | 6 | All | 0.000001 |
S | 682 | R682G | CgG | GgA | 2 | 6 | All | 0 |
S | 682 | R682G | CgG | GgC | 1 | 6 | All | 0 |
S | 682 | R682W | Cgg | Tgg | 6 | 6 | AY.4 | 0.000009 |
S | 682 | R682R | cgG | cgC | 6 | 6 | AY.4.3 | 0.005051 |
S | 682 | R682del | CGG | --- | 6 | 6 | AY.43 | 0.000027 |
S | 682 | R682R | cgG | cgT | 4 | 6 | AY.7.1 | 0.000451 |
S | 682 | R682R | cgG | cgA | 2 | 6 | AY.7.1 | 0.000225 |
S | 682 | R682R | cgG | cgA | 3 | 6 | AY.91 | 0.002191 |
S | 682 | R682R | cgG | cgT | 3 | 6 | AY.91 | 0.002191 |
S | 682 | R682R | cgG | cgT | 6 | 6 | AY.92 | 0.001724 |
S | 682 | R682R | cgG | cgC | 5 | 6 | B.1.1.10 | 0.005574 |
S | 682 | R682R | cgG | cgT | 1 | 6 | B.1.1.10 | 0.001115 |
S | 682 | R682R | cgG | cgT | 5 | 6 | B.1.1.25 | 0.002843 |
S | 682 | R682R | Cgg | Agg | 1 | 6 | B.1.1.25 | 0.000569 |
S | 682 | R682R | cgG | cgT | 6 | 6 | B.1.1.344 | 0.064516 |
S | 682 | R682R | cgG | cgA | 4 | 6 | B.1.1.348 | 0.003185 |
S | 682 | R682R | cgG | cgT | 1 | 6 | B.1.1.348 | 0.000796 |
S | 682 | R682R | cgG | cgC | 1 | 6 | B.1.1.348 | 0.000796 |
S | 682 | R682R | cgG | cgT | 6 | 6 | B.1.139 | 0.004399 |
S | 682 | R682R | cgG | cgT | 6 | 6 | B.1.177.43 | 0.008863 |
S | 682 | R682R | cgG | cgA | 3 | 6 | B.1.575 | 0.00091 |
S | 682 | R682R | cgG | cgT | 3 | 6 | B.1.575 | 0.00091 |
S | 682 | R682W | Cgg | Tgg | 6 | 6 | B.1.617.2 | 0.000023 |
S | 682 | R682R | cgG | cgT | 6 | 6 | B.1.621.1 | 0.003035 |
S | 682 | R682W | Cgg | Tgg | 5 | 5 | AY.103 | 0.000031 |
S | 682 | R682R | cgG | cgT | 4 | 5 | AY.110 | 0.000451 |
S | 682 | R682R | Cgg | Agg | 1 | 5 | AY.110 | 0.000113 |
S | 682 | R682R | cgG | cgT | 5 | 5 | AY.116 | 0.001434 |
S | 682 | R682L | cGg | cTg | 5 | 5 | AY.25 | 0.00003 |
S | 682 | R682W | Cgg | Tgg | 5 | 5 | AY.25 | 0.00003 |
S | 682 | R682R | cgG | cgT | 5 | 5 | AY.27 | 0.000324 |
S | 682 | R682R | cgG | cgA | 5 | 5 | AY.30 | 0.001979 |
S | 682 | R682W | Cgg | Tgg | 5 | 5 | AY.43 | 0.000022 |
S | 682 | R682R | cgG | cgT | 5 | 5 | AY.46.4 | 0.000823 |
S | 682 | R682R | cgG | cgA | 3 | 5 | AY.7 | 0.000588 |
S | 682 | R682R | cgG | cgT | 2 | 5 | AY.7 | 0.000392 |
S | 682 | R682R | cgG | cgA | 5 | 5 | AY.89 | 0.02451 |
S | 682 | R682R | cgG | cgT | 4 | 5 | AY.99.2 | 0.000369 |
S | 682 | R682R | cgG | cgC | 1 | 5 | AY.99.2 | 0.000092 |
S | 682 | R682P | cGg | cCg | 5 | 5 | B.1.1 | 0.000091 |
S | 682 | R682R | cgG | cgT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 682 | R682R | cgG | cgT | 4 | 5 | B.1.234 | 0.000528 |
S | 682 | R682R | cgG | cgA | 1 | 5 | B.1.234 | 0.000132 |
S | 682 | R682R | cgG | cgT | 5 | 5 | B.1.396 | 0.003529 |
S | 682 | R682R | cgG | cgC | 3 | 5 | B.1.404 | 0.003906 |
S | 682 | R682R | cgG | cgT | 2 | 5 | B.1.404 | 0.002604 |
S | 682 | R682R | cgG | cgT | 5 | 5 | B.1.621 | 0.000443 |
S | 682 | R682L | cGG | cTA | 2 | 4 | 0.111111 | |
S | 682 | R682V | CGg | GTg | 2 | 4 | 0.111111 | |
S | 682 | R682G | CgG | GgA | 2 | 4 | 0.111111 | |
S | 682 | R682V | CGG | GTA | 2 | 4 | 0.111111 | |
S | 682 | R682L | cGg | cTg | 2 | 4 | 0.111111 | |
S | 682 | R682G | Cgg | Ggg | 2 | 4 | 0.111111 | |
S | 682 | R682V | CGg | GTg | 2 | 4 | All | 0 |
S | 682 | R682V | CGG | GTA | 2 | 4 | All | 0 |
S | 682 | R682R | cgG | cgT | 4 | 4 | AY.101 | 0.001962 |
S | 682 | R682R | cgG | cgT | 3 | 4 | AY.113 | 0.000427 |
S | 682 | R682R | cgG | cgA | 1 | 4 | AY.113 | 0.000142 |
S | 682 | R682R | cgG | cgT | 4 | 4 | AY.12 | 0.001264 |
S | 682 | R682R | cgG | cgT | 4 | 4 | AY.121 | 0.000541 |
S | 682 | R682L | cGg | cTg | 4 | 4 | AY.39 | 0.000099 |
S | 682 | R682R | cgG | cgT | 4 | 4 | AY.39.1 | 0.000158 |
S | 682 | R682L | cGg | cTg | 4 | 4 | AY.4.5 | 0.00043 |
S | 682 | R682W | Cgg | Tgg | 4 | 4 | AY.44 | 0.000024 |
S | 682 | R682R | cgG | cgT | 2 | 4 | AY.5.3 | 0.000675 |
S | 682 | R682R | cgG | cgA | 2 | 4 | AY.5.3 | 0.000675 |
S | 682 | R682R | cgG | cgA | 4 | 4 | AY.5.4 | 0.001107 |
S | 682 | R682R | cgG | cgT | 4 | 4 | AY.55 | 0.00367 |
S | 682 | R682R | cgG | cgT | 4 | 4 | AY.84 | 0.00175 |
S | 682 | R682R | cgG | cgC | 4 | 4 | AY.85 | 0.001709 |
S | 682 | R682W | Cgg | Tgg | 4 | 4 | AY.9.2 | 0.000147 |
S | 682 | R682R | cgG | cgT | 4 | 4 | AY.93 | 0.001092 |
S | 682 | R682R | cgG | cgT | 3 | 4 | B.1.1.170 | 0.003741 |
S | 682 | R682R | Cgg | Agg | 1 | 4 | B.1.1.170 | 0.001247 |
S | 682 | R682R | cgG | cgT | 3 | 4 | B.1.1.317 | 0.001235 |
S | 682 | R682R | cgG | cgA | 1 | 4 | B.1.1.317 | 0.000412 |
S | 682 | R682R | cgG | cgT | 3 | 4 | B.1.1.318 | 0.000905 |
S | 682 | R682R | cgG | cgA | 1 | 4 | B.1.1.318 | 0.000302 |
S | 682 | R682R | cgG | cgT | 4 | 4 | B.1.1.5 | 0.033333 |
S | 682 | R682L | cGg | cTg | 4 | 4 | B.1.160 | 0.000125 |
S | 682 | R682R | cgG | cgT | 4 | 4 | B.1.177.21 | 0.000306 |
S | 682 | R682W | Cgg | Tgg | 4 | 4 | B.1.2 | 0.000035 |
S | 682 | R682R | cgG | cgT | 4 | 4 | B.1.369 | 0.001141 |
S | 682 | R682R | cgG | cgT | 4 | 4 | B.1.466.2 | 0.001565 |
S | 682 | R682del | CGG | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 682 | R682R | cgG | cgT | 3 | 4 | B.1.637 | 0.000219 |
S | 682 | R682R | cgG | cgC | 1 | 4 | B.1.637 | 0.000073 |
S | 682 | R682R | cgG | cgT | 4 | 4 | C.2 | 0.064516 |
S | 682 | R682R | cgG | cgT | 4 | 4 | Q.1 | 0.000505 |
S | 682 | R682Q | cGg | cAg | 3 | 3 | A | 0.001161 |
S | 682 | R682R | cgG | cgT | 2 | 3 | AY.16 | 0.000759 |
S | 682 | R682R | cgG | cgA | 1 | 3 | AY.16 | 0.00038 |
S | 682 | R682L | cGg | cTg | 3 | 3 | AY.20 | 0.000117 |
S | 682 | R682del | CGG | --- | 3 | 3 | AY.25 | 0.000018 |
S | 682 | R682R | cgG | cgT | 3 | 3 | AY.32 | 0.001597 |
S | 682 | R682R | cgG | cgT | 3 | 3 | AY.34.1 | 0.00153 |
S | 682 | R682Q | cGg | cAg | 3 | 3 | AY.4 | 0.000005 |
S | 682 | R682W | Cgg | Tgg | 3 | 3 | AY.6 | 0.000123 |
S | 682 | R682R | cgG | cgT | 3 | 3 | AY.62 | 0.001307 |
S | 682 | R682R | cgG | cgT | 3 | 3 | AY.9 | 0.000203 |
S | 682 | R682L | cGg | cTg | 3 | 3 | B | 0.000383 |
S | 682 | R682Q | cGg | cAg | 3 | 3 | B.1 | 0.000027 |
S | 682 | R682del | CGG | --- | 3 | 3 | B.1.1 | 0.000054 |
S | 682 | R682R | cgG | cgA | 3 | 3 | B.1.1.171 | 0.011029 |
S | 682 | R682R | cgG | cgT | 3 | 3 | B.1.1.37 | 0.000579 |
S | 682 | R682R | cgG | cgT | 2 | 3 | B.1.1.50 | 0.001358 |
S | 682 | R682R | cgG | cgC | 1 | 3 | B.1.1.50 | 0.000679 |
S | 682 | R682Q | cGg | cAg | 3 | 3 | B.1.1.7 | 0.000003 |
S | 682 | R682R | cgG | cgT | 3 | 3 | B.1.1.70 | 0.001023 |
S | 682 | R682W | Cgg | Tgg | 3 | 3 | B.1.160 | 0.000094 |
S | 682 | R682R | cgG | cgT | 3 | 3 | B.1.265 | 0.003812 |
S | 682 | R682R | cgG | cgT | 3 | 3 | B.1.561 | 0.001191 |
S | 682 | R682R | cgG | cgT | 3 | 3 | B.1.595 | 0.000783 |
S | 682 | R682R | cgG | cgT | 3 | 3 | B.1.609 | 0.001438 |
S | 682 | R682R | cgG | cgT | 3 | 3 | B.1.630 | 0.015707 |
S | 682 | R682R | cgG | cgA | 3 | 3 | B.4.8 | 0.214286 |
S | 682 | R682R | cgG | cgA | 3 | 3 | N.5 | 0.0053 |
S | 682 | R682del | CGG | --- | 3 | 3 | P.1 | 0.000047 |
S | 682 | R682del | CGG | --- | 3 | 3 | P.1.15 | 0.000697 |
S | 682 | R682R | cgG | cgA | 2 | 2 | 0.111111 | |
S | 682 | R682del | CGG | --- | 2 | 2 | 0.111111 | |
S | 682 | R682del | CGG | --- | 2 | 2 | A | 0.000774 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | A.1 | 0.000564 |
S | 682 | R682R | cgG | cgT | 2 | 2 | A.2.5 | 0.000998 |
S | 682 | R682R | cgG | cgT | 2 | 2 | A.23 | 0.021053 |
S | 682 | R682X | CGg | TAg | 2 | 2 | All | 0 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.10 | 0.00106 |
S | 682 | R682R | cgG | cgT | 1 | 2 | AY.114 | 0.000231 |
S | 682 | R682R | cgG | cgA | 1 | 2 | AY.114 | 0.000231 |
S | 682 | R682L | cGg | cTg | 2 | 2 | AY.16 | 0.000759 |
S | 682 | R682L | cGg | cTg | 2 | 2 | AY.29 | 0.000032 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | AY.3.1 | 0.000171 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.3.1 | 0.000171 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.35 | 0.000466 |
S | 682 | R682R | cgG | cgT | 1 | 2 | AY.38 | 0.000499 |
S | 682 | R682R | Cgg | Agg | 1 | 2 | AY.38 | 0.000499 |
S | 682 | R682Q | cGg | cAg | 2 | 2 | AY.39.1 | 0.000079 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.41 | 0.000588 |
S | 682 | R682L | cGg | cTg | 2 | 2 | AY.44 | 0.000012 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.46.2 | 0.001271 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.46.5 | 0.000397 |
S | 682 | R682L | cGg | cTg | 2 | 2 | AY.5 | 0.000041 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.54 | 0.000191 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.59 | 0.001059 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.65 | 0.001066 |
S | 682 | R682L | cGg | cTg | 2 | 2 | AY.67 | 0.000929 |
S | 682 | R682R | Cgg | Agg | 1 | 2 | AY.67 | 0.000464 |
S | 682 | R682R | cgG | cgT | 1 | 2 | AY.67 | 0.000464 |
S | 682 | R682R | cgG | cgT | 2 | 2 | AY.70 | 0.000417 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | AY.70 | 0.000417 |
S | 682 | R682R | cgG | cgA | 1 | 2 | AY.79 | 0.001211 |
S | 682 | R682R | cgG | cgT | 1 | 2 | AY.79 | 0.001211 |
S | 682 | R682L | cGg | cTg | 2 | 2 | AY.9 | 0.000135 |
S | 682 | R682L | cGg | cTg | 2 | 2 | AY.93 | 0.000546 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | AY.98 | 0.000158 |
S | 682 | R682R | cgG | cgA | 1 | 2 | AY.99 | 0.001049 |
S | 682 | R682R | cgG | cgT | 1 | 2 | AY.99 | 0.001049 |
S | 682 | R682Q | cGg | cAg | 2 | 2 | B | 0.000256 |
S | 682 | R682R | cgG | cgA | 1 | 2 | B | 0.000128 |
S | 682 | R682R | cgG | cgT | 1 | 2 | B | 0.000128 |
S | 682 | R682L | cGg | cTg | 2 | 2 | B.1.1 | 0.000036 |
S | 682 | R682Q | cGg | cAg | 2 | 2 | B.1.1 | 0.000036 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.1.174 | 0.006757 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.1.219 | 0.01 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.1.306 | 0.000877 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.1.369 | 0.000892 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.1.372 | 0.001377 |
S | 682 | R682P | cGg | cCg | 2 | 2 | B.1.1.7 | 0.000002 |
S | 682 | R682Q | cGg | cAg | 2 | 2 | B.1.160 | 0.000062 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | B.1.177 | 0.000026 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.177.10 | 0.001756 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.177.2 | 0.009091 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.177.4 | 0.000422 |
S | 682 | R682Q | cGg | cAg | 2 | 2 | B.1.2 | 0.000018 |
S | 682 | R682L | cGg | cTg | 2 | 2 | B.1.2 | 0.000018 |
S | 682 | R682R | cgG | cgC | 1 | 2 | B.1.214.2 | 0.0006 |
S | 682 | R682R | cgG | cgT | 1 | 2 | B.1.214.2 | 0.0006 |
S | 682 | R682R | cgG | cgA | 1 | 2 | B.1.260 | 0.003344 |
S | 682 | R682R | cgG | cgT | 1 | 2 | B.1.260 | 0.003344 |
S | 682 | R682R | Cgg | Agg | 2 | 2 | B.1.3 | 0.005236 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.36.31 | 0.003503 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.360 | 0.025316 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.389 | 0.002004 |
S | 682 | R682R | cgG | cgT | 1 | 2 | B.1.398 | 0.002976 |
S | 682 | R682R | cgG | cgA | 1 | 2 | B.1.398 | 0.002976 |
S | 682 | R682R | cgG | cgA | 1 | 2 | B.1.453 | 0.003236 |
S | 682 | R682R | cgG | cgT | 1 | 2 | B.1.453 | 0.003236 |
S | 682 | R682del | CGG | --- | 2 | 2 | B.1.462 | 0.014493 |
S | 682 | R682del1 | Cgg | -gg | 2 | 2 | B.1.462 | 0.014493 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.505 | 0.008772 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | B.1.526 | 0.000047 |
S | 682 | R682del | CGG | --- | 2 | 2 | B.1.596 | 0.000174 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | B.1.609 | 0.000959 |
S | 682 | R682R | cgG | cgT | 2 | 2 | B.1.619.1 | 0.001283 |
S | 682 | R682del | CGG | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | D.2 | 0.00015 |
S | 682 | R682L | cGg | cTg | 2 | 2 | D.2 | 0.00015 |
S | 682 | R682W | Cgg | Tgg | 2 | 2 | P.1 | 0.000032 |
S | 682 | R682Q | cGg | cAg | 2 | 2 | P.1.15 | 0.000465 |
S | 682 | R682R | cgG | cgT | 2 | 2 | P.1.16 | 0.000748 |
S | 682 | R682R | cgG | cgT | 2 | 2 | P.1.7 | 0.000639 |
S | 682 | R682R | cgG | cgT | 2 | 2 | P.6 | 0.006289 |
S | 682 | R682R | cgG | cgT | 2 | 2 | Q.4 | 0.00091 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | 0.055556 | |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | A | 0.000387 |
S | 682 | R682del | CGG | --- | 1 | 1 | A.1 | 0.000282 |
S | 682 | R682R | cgG | cgT | 1 | 1 | A.19 | 0.009434 |
S | 682 | R682R | cgG | cgT | 1 | 1 | A.2.2 | 0.001689 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | A.2.2 | 0.001689 |
S | 682 | R682R | cgG | cgT | 1 | 1 | A.23.1 | 0.000704 |
S | 682 | R682R | cgG | cgA | 1 | 1 | AD.2 | 0.000219 |
S | 682 | R682M | CGg | ATg | 1 | 1 | All | 0 |
S | 682 | R682C | CgG | TgC | 1 | 1 | All | 0 |
S | 682 | R682H | cGG | cAT | 1 | 1 | All | 0 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AU.1 | 0.001266 |
S | 682 | R682R | cgG | cgA | 1 | 1 | AY.1 | 0.000396 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.100 | 0.000046 |
S | 682 | R682del | CGG | --- | 1 | 1 | AY.103 | 0.000006 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.12 | 0.000316 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.120 | 0.000037 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | AY.121 | 0.000135 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.13 | 0.000161 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.19 | 0.00114 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.2 | 0.000356 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.23 | 0.00007 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.23.1 | 0.000417 |
S | 682 | R682R | Cgg | Agg | 1 | 1 | AY.24 | 0.000431 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.26 | 0.000028 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.26 | 0.000028 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.28 | 0.00189 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.29 | 0.000016 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | AY.29 | 0.000016 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.3 | 0.00001 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | AY.3 | 0.00001 |
S | 682 | R682del | CGG | --- | 1 | 1 | AY.3 | 0.00001 |
S | 682 | R682G | CgG | GgC | 1 | 1 | AY.30 | 0.000396 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.34 | 0.000097 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.34 | 0.000097 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.36 | 0.000148 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.39 | 0.000025 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.39.1 | 0.00004 |
S | 682 | R682P | cGg | cCg | 1 | 1 | AY.4 | 0.000002 |
S | 682 | R682del1 | cGg | c-g | 1 | 1 | AY.4 | 0.000002 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.4.1 | 0.000737 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.4.2 | 0.000022 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.4.2 | 0.000022 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.41 | 0.000294 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.42 | 0.00004 |
S | 682 | R682P | cGg | cCg | 1 | 1 | AY.44 | 0.000006 |
S | 682 | R682del | CGG | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.46.5 | 0.000198 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.47 | 0.000031 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.48 | 0.000465 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.48 | 0.000465 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.5.4 | 0.000277 |
S | 682 | R682R | cgG | cgA | 1 | 1 | AY.58 | 0.000907 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.61 | 0.000105 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.63 | 0.000387 |
S | 682 | R682M | CGg | ATg | 1 | 1 | AY.67 | 0.000464 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.68 | 0.000274 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.69 | 0.000187 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.7.2 | 0.000559 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.73 | 0.000665 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.74 | 0.000116 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | AY.75 | 0.000056 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | AY.75.1 | 0.00018 |
S | 682 | R682R | cgG | cgA | 1 | 1 | AY.77 | 0.001127 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.78 | 0.001541 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.84 | 0.000437 |
S | 682 | R682del | CGG | --- | 1 | 1 | AY.84 | 0.000437 |
S | 682 | R682R | cgG | cgA | 1 | 1 | AY.87 | 0.000833 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.88 | 0.000884 |
S | 682 | R682del1 | cGg | c-g | 1 | 1 | AY.9 | 0.000068 |
S | 682 | R682del | CGG | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 682 | R682L | cGg | cTg | 1 | 1 | AY.98 | 0.000079 |
S | 682 | R682del | CGG | --- | 1 | 1 | AY.99 | 0.001049 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AY.99.1 | 0.001553 |
S | 682 | R682R | cgG | cgT | 1 | 1 | AZ.2 | 0.000821 |
S | 682 | R682H | cGG | cAT | 1 | 1 | AZ.2.1 | 0.00813 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B | 0.000128 |
S | 682 | R682del1 | cGG | c-T | 1 | 1 | B.1 | 0.000009 |
S | 682 | R682X | CGg | TAg | 1 | 1 | B.1 | 0.000009 |
S | 682 | R682X | CGg | TAg | 1 | 1 | B.1.1 | 0.000018 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | B.1.1.1 | 0.000327 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.111 | 0.014706 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.1.135 | 0.004695 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.1.189 | 0.001513 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.196 | 0.005714 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.1.222 | 0.000204 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.236 | 0.006897 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.241 | 0.00207 |
S | 682 | R682L | cGg | cTg | 1 | 1 | B.1.1.269 | 0.001353 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.27 | 0.00565 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.271 | 0.055556 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.273 | 0.006757 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.279 | 0.001121 |
S | 682 | R682R | cgG | cgA | 1 | 1 | B.1.1.286 | 0.002899 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.291 | 0.000742 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.297 | 0.002237 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.304 | 0.002809 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.1.311 | 0.000358 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.322 | 0.008772 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.368 | 0.003086 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.1.37 | 0.000193 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.374 | 0.002375 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.388 | 0.045455 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 682 | R682R | Cgg | Agg | 1 | 1 | B.1.1.416 | 0.000905 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.1.453 | 0.008475 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.1.519 | 0.00004 |
S | 682 | R682R | Cgg | Agg | 1 | 1 | B.1.1.58 | 0.005376 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.1.63 | 0.000386 |
S | 682 | R682del1 | cGg | c-g | 1 | 1 | B.1.1.7 | 0.000001 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.160.11 | 0.005714 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.160.33 | 0.004425 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.15 | 0.000631 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.16 | 0.000664 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.31 | 0.011494 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.32 | 0.00135 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.177.44 | 0.000519 |
S | 682 | R682R | Cgg | Agg | 1 | 1 | B.1.177.54 | 0.000606 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.57 | 0.000281 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.65 | 0.000665 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.82 | 0.000477 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.177.86 | 0.000183 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.214 | 0.003663 |
S | 682 | R682G | Cgg | Ggg | 1 | 1 | B.1.234 | 0.000132 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.243 | 0.00007 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.264 | 0.012346 |
S | 682 | R682L | cGg | cTg | 1 | 1 | B.1.329 | 0.000608 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.329 | 0.000608 |
S | 682 | R682L | cGg | cTg | 1 | 1 | B.1.351 | 0.00003 |
S | 682 | R682P | cGg | cCg | 1 | 1 | B.1.351 | 0.00003 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.36.19 | 0.009259 |
S | 682 | R682del1 | cGg | c-g | 1 | 1 | B.1.36.2 | 0.010753 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.36.29 | 0.000517 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.36.9 | 0.003215 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.361 | 0.001289 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.362 | 0.001541 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.367 | 0.000792 |
S | 682 | R682L | cGg | cTg | 1 | 1 | B.1.367 | 0.000792 |
S | 682 | R682C | CgG | TgC | 1 | 1 | B.1.377 | 0.004566 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.395 | 0.007042 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.396 | 0.000706 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.413 | 0.004255 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.413 | 0.004255 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | B.1.416 | 0.001269 |
S | 682 | R682R | cgG | cgA | 1 | 1 | B.1.425 | 0.002994 |
S | 682 | R682L | cGg | cTg | 1 | 1 | B.1.427 | 0.00005 |
S | 682 | R682L | cGg | cTg | 1 | 1 | B.1.429 | 0.000024 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.438.1 | 0.000107 |
S | 682 | R682R | cgG | cgA | 1 | 1 | B.1.459 | 0.004082 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.462 | 0.007246 |
S | 682 | R682R | cgG | cgA | 1 | 1 | B.1.468 | 0.005714 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.499 | 0.00105 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.499.1 | 0.111111 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | B.1.544 | 0.006024 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.552 | 0.015152 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.564 | 0.000426 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.596 | 0.000087 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.618 | 0.004032 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.619 | 0.000871 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.621 | 0.000089 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.625 | 0.002353 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.628 | 0.000352 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.1.637 | 0.000073 |
S | 682 | R682del | CGG | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.1.97 | 0.025641 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.28 | 0.003279 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | B.4 | 0.002208 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.4.7 | 0.010101 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.6 | 0.00091 |
S | 682 | R682R | cgG | cgT | 1 | 1 | B.6.6 | 0.000889 |
S | 682 | R682R | cgG | cgC | 1 | 1 | C.1.2 | 0.004255 |
S | 682 | R682del | CGG | --- | 1 | 1 | C.37 | 0.000116 |
S | 682 | R682del1 | cGg | c-g | 1 | 1 | D.2 | 0.000075 |
S | 682 | R682R | cgG | cgT | 1 | 1 | L.3 | 0.003546 |
S | 682 | R682del | CGG | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 682 | R682R | cgG | cgT | 1 | 1 | P.1.15 | 0.000232 |
S | 682 | R682R | cgG | cgT | 1 | 1 | P.1.2 | 0.001156 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | Q.3 | 0.000145 |
S | 682 | R682Q | cGg | cAg | 1 | 1 | R.1 | 0.00009 |
S | 682 | R682W | Cgg | Tgg | 1 | 1 | W.1 | 0.008696 |
S | 682 | R682R | cgG | cgA | 1 | 1 | XA | 0.022222 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|