CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 681 & Codon = cTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S681P681LnonsyncCtcTt14891489123603-23605

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S681P681LcCtcTt14891489All0.000285
S681P681LcCtcTt340340B.1.5701
S681P681LcCtcTt187187B.1.1.2140.01037
S681P681LcCtcTt9292B.1.2580.006122
S681P681LcCtcTt9090B.10.000824
S681P681LcCtcTt6161B.1.10.001107
S681P681LcCtcTt5959AY.40.000092
S681P681LcCtcTt4747B.1.20.000414
S681P681LcCtcTt3737B.1.617.20.000139
S681P681LcCtcTt3333B.1.1.260.172775
S681P681LcCtcTt3131AY.290.000489
S681P681LcCtcTt3030AY.430.000133
S681P681LcCtcTt2525P.10.000394
S681P681LcCtcTt2323AY.1030.000143
S681P681LcCtcTt2323B.1.4940.793103
S681P681LcCtcTt1818B.1.3510.000535
S681P681LcCtcTt1414B.1.5260.000329
S681P681LcCtcTt1313B.1.1.70.000012
S681P681LcCtcTt1313B.1.4290.000306
S681P681LcCtcTt1212AY.39.10.000475
S681P681LcCtcTt1111AY.250.000066
S681P681LcCtcTt1111B.1.2210.000781
S681P681LcCtcTt1111B.1.360.001605
S681P681LcCtcTt1010P.1.140.000478
S681P681LcCtcTt1010R.10.0009
S681P681LcCtcTt99B.1.1.2770.006829
S681P681LcCtcTt99B.1.1770.000119
S681P681LcCtcTt88AY.440.000049
S681P681LcCtcTt88B.1.4270.000404
S681P681LcCtcTt77AY.1020.000186
S681P681LcCtcTt77AY.1170.000592
S681P681LcCtcTt77AY.1200.00026
S681P681LcCtcTt77P.50.09589
S681P681LcCtcTt66AY.270.000388
S681P681LcCtcTt66B.1.2340.000792
S681P681LcCtcTt55AY.260.000142
S681P681LcCtcTt55AY.4.20.000108
S681P681LcCtcTt55AY.50.000103
S681P681LcCtcTt55B.1.1.2840.000537
S681P681LcCtcTt55B.1.1.390.002548
S681P681LcCtcTt55B.1.5250.000566
S681P681LcCtcTt55P.1.170.000809
S681P681LcCtcTt44AY.1070.001864
S681P681LcCtcTt44AY.98.10.000194
S681P681LcCtcTt44B.1.258.170.000416
S681P681LcCtcTt44C.370.000464
S681P681LcCtcTt33AY.1210.000406
S681P681LcCtcTt33AY.240.001293
S681P681LcCtcTt33AY.30.00003
S681P681LcCtcTt33AY.390.000074
S681P681LcCtcTt33AY.60.000123
S681P681LcCtcTt33AY.680.000821
S681P681LcCtcTt33B.1.1.3080.035294
S681P681LcCtcTt33B.1.1.370.000579
S681P681LcCtcTt33B.1.1600.000094
S681P681LcCtcTt33B.1.5270.011111
S681P681LcCtcTt33B.1.5770.002062
S681P681LcCtcTt33C.350.002322
S681P681LcCtcTt33D.20.000225
S681P681LcCtcTt33N.50.0053
S681P681LcCtcTt33P.1.120.001452
S681P681LcCtcTt22AY.200.000078
S681P681LcCtcTt22AY.230.000139
S681P681LcCtcTt22AY.360.000296
S681P681LcCtcTt22AY.420.00008
S681P681LcCtcTt22AY.460.000208
S681P681LcCtcTt22AY.46.50.000397
S681P681LcCtcTt22AY.470.000062
S681P681LcCtcTt22AY.610.00021
S681P681LcCtcTt22AY.710.00095
S681P681LcCtcTt22AY.9.20.000073
S681P681LcCtcTt22AY.970.003401
S681P681LcCtcTt22AY.980.000158
S681P681LcCtcTt22B.1.1.10.000653
S681P681LcCtcTt22B.1.1.280.000622
S681P681LcCtcTt22B.1.1.3060.000877
S681P681LcCtcTt22B.1.1.3350.025974
S681P681LcCtcTt22B.1.1.5230.003125
S681P681LcCtcTt22B.1.1.580.010753
S681P681LcCtcTt22B.1.1.630.000772
S681P681LcCtcTt22B.1.177.440.001038
S681P681LcCtcTt22B.1.177.580.002663
S681P681LcCtcTt22B.1.2060.001631
S681P681LcCtcTt22B.1.2430.000139
S681P681LcCtcTt22B.1.2790.001027
S681P681LcCtcTt22B.1.351.20.000605
S681P681LcCtcTt22B.1.3850.021277
S681P681LcCtcTt22B.1.4620.014493
S681P681LcCtcTt22B.1.5640.000852
S681P681LcCtcTt22B.1.5800.00813
S681P681LcCtcTt22B.1.5950.000522
S681P681LcCtcTt22L.10.00381
S681P681LcCtcTt22P.1.150.000465
S681P681LcCtcTt11AE.80.000489
S681P681LcCtcTt11AY.1110.000183
S681P681LcCtcTt11AY.1190.000035
S681P681LcCtcTt11AY.120.10.000321
S681P681LcCtcTt11AY.130.000161
S681P681LcCtcTt11AY.150.002222
S681P681LcCtcTt11AY.29.10.000221
S681P681LcCtcTt11AY.300.000396
S681P681LcCtcTt11AY.4.30.000842
S681P681LcCtcTt11AY.70.000196
S681P681LcCtcTt11AY.750.000056
S681P681LcCtcTt11AY.830.001724
S681P681LcCtcTt11AY.880.000884
S681P681LcCtcTt11AY.90.000068
S681P681LcCtcTt11AY.9.10.000084
S681P681LcCtcTt11AY.920.000287
S681P681LcCtcTt11B.1.1.1290.009174
S681P681LcCtcTt11B.1.1.150.013514
S681P681LcCtcTt11B.1.1.2200.001859
S681P681LcCtcTt11B.1.1.2220.000204
S681P681LcCtcTt11B.1.1.250.000569
S681P681LcCtcTt11B.1.1.2690.001353
S681P681LcCtcTt11B.1.1.2750.011236
S681P681LcCtcTt11B.1.1.2790.001121
S681P681LcCtcTt11B.1.1.3110.000358
S681P681LcCtcTt11B.1.1.330.000421
S681P681LcCtcTt11B.1.1.3970.002252
S681P681LcCtcTt11B.1.1.4120.007634
S681P681LcCtcTt11B.1.1.5190.00004
S681P681LcCtcTt11B.1.1.5260.003546
S681P681LcCtcTt11B.1.160.160.000929
S681P681LcCtcTt11B.1.177.150.000631
S681P681LcCtcTt11B.1.177.50.001242
S681P681LcCtcTt11B.1.177.560.000668
S681P681LcCtcTt11B.1.177.730.000566
S681P681LcCtcTt11B.1.1890.004292
S681P681LcCtcTt11B.1.3300.028571
S681P681LcCtcTt11B.1.36.170.000494
S681P681LcCtcTt11B.1.36.290.000517
S681P681LcCtcTt11B.1.3660.004878
S681P681LcCtcTt11B.1.3690.000285
S681P681LcCtcTt11B.1.3750.00082
S681P681LcCtcTt11B.1.5170.000427
S681P681LcCtcTt11B.1.5210.004975
S681P681LcCtcTt11B.1.5740.002151
S681P681LcCtcTt11B.1.5960.000087
S681P681LcCtcTt11B.1.617.10.000129
S681P681LcCtcTt11B.1.6270.00202
S681P681LcCtcTt11B.30.000831
S681P681LcCtcTt11B.550.00295
S681P681LcCtcTt11B.60.00091
S681P681LcCtcTt11C.360.000911
S681P681LcCtcTt11P.1.160.000374
S681P681LcCtcTt11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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