CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 681 | P681H | nonsyn | cCt | cAt | 1223571 | 1223473 | 0.99992 | 23603-23605 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 681 | P681H | cCt | cAt | 1223473 | 1223571 | All | 0.234004 |
S | 681 | P681H | cCt | cAt | 1112441 | 1112533 | B.1.1.7 | 0.995883 |
S | 681 | P681H | cCt | cAt | 25132 | 25132 | B.1.1.519 | 0.998014 |
S | 681 | P681H | cCt | cAt | 11240 | 11240 | B.1.621 | 0.994954 |
S | 681 | P681H | cCt | cAt | 7824 | 7824 | Q.1 | 0.988378 |
S | 681 | P681H | cCt | cAt | 7600 | 7603 | B.1.243 | 0.528843 |
S | 681 | P681H | cCt | cAt | 6887 | 6887 | Q.3 | 0.99884 |
S | 681 | P681H | cCt | cAt | 5875 | 5875 | Q.8 | 0.968832 |
S | 681 | P681H | cCt | cAt | 4502 | 4502 | B.1.1 | 0.08167 |
S | 681 | P681H | cCt | cAt | 3293 | 3293 | B.1.1.318 | 0.993663 |
S | 681 | P681H | cCt | cAt | 3278 | 3278 | B.1.575 | 0.994539 |
S | 681 | P681H | cCt | cAt | 3098 | 3101 | P.1.7 | 0.989144 |
S | 681 | P681H | cCt | cAt | 2818 | 2818 | B.1.628 | 0.992953 |
S | 681 | P681H | cCt | cAt | 2722 | 2722 | B.1 | 0.024932 |
S | 681 | P681H | cCt | cAt | 2014 | 2014 | B.1.2 | 0.017734 |
S | 681 | P681H | cCt | cAt | 1968 | 1968 | B.1.621.1 | 0.995448 |
S | 681 | P681H | cCt | cAt | 1780 | 1780 | B.1.623 | 0.954936 |
S | 681 | P681H | cCt | cAt | 1625 | 1625 | Q.2 | 0.996933 |
S | 681 | P681H | cCt | cAt | 1203 | 1203 | AZ.2 | 0.987685 |
S | 681 | P681H | cCt | cAt | 1152 | 1152 | AZ.1 | 0.999133 |
S | 681 | P681H | cCt | cAt | 1048 | 1048 | B.1.620 | 0.991485 |
S | 681 | P681H | cCt | cAt | 1005 | 1005 | P.1 | 0.015833 |
S | 681 | P681H | cCt | cAt | 896 | 896 | Q.7 | 0.995556 |
S | 681 | P681H | cCt | cAt | 842 | 842 | B.1.1.207 | 0.995272 |
S | 681 | P681H | cCt | cAt | 714 | 714 | P.1.1 | 0.226811 |
S | 681 | P681H | cCt | cAt | 657 | 657 | AZ.3 | 0.99848 |
S | 681 | P681H | cCt | cAt | 621 | 621 | P.3 | 0.990431 |
S | 681 | P681H | cCt | cAt | 514 | 514 | P.1.6 | 1 |
S | 681 | P681H | cCt | cAt | 508 | 508 | B.1.474 | 0.965779 |
S | 681 | P681H | cCt | cAt | 491 | 491 | B.1.627 | 0.991919 |
S | 681 | P681H | cCt | cAt | 475 | 475 | B.1.400 | 0.203775 |
S | 681 | P681H | cCt | cAt | 396 | 396 | B.1.575.1 | 0.965854 |
S | 681 | P681H | cCt | cAt | 391 | 391 | B.1.637 | 0.028571 |
S | 681 | P681H | cCt | cAt | 355 | 355 | B.1.1.351 | 0.99162 |
S | 681 | P681H | cCt | cAt | 297 | 297 | AZ.4 | 0.996644 |
S | 681 | P681H | cCt | cAt | 296 | 296 | B.1.631 | 0.996633 |
S | 681 | P681H | cCt | cAt | 285 | 285 | AZ.5 | 1 |
S | 681 | P681H | cCt | cAt | 259 | 259 | B.1.1.306 | 0.113547 |
S | 681 | P681H | cCt | cAt | 240 | 240 | B.1.1.50 | 0.162933 |
S | 681 | P681H | cCt | cAt | 230 | 230 | B.1.469 | 0.830325 |
S | 681 | P681H | cCt | cAt | 214 | 214 | B.1.576 | 0.194016 |
S | 681 | P681H | cCt | cAt | 208 | 208 | B.1.575.2 | 1 |
S | 681 | P681H | cCt | cAt | 206 | 206 | B.1.596 | 0.017951 |
S | 681 | P681H | cCt | cAt | 195 | 195 | AV.1 | 0.984848 |
S | 681 | P681H | cCt | cAt | 187 | 187 | B.1.177.73 | 0.105889 |
S | 681 | P681H | cCt | cAt | 176 | 176 | B.1.1.526 | 0.624113 |
S | 681 | P681H | cCt | cAt | 166 | 166 | B.1.427 | 0.008383 |
S | 681 | P681H | cCt | cAt | 151 | 151 | Q.6 | 1 |
S | 681 | P681H | cCt | cAt | 136 | 136 | B.1.609 | 0.065197 |
S | 681 | P681H | cCt | cAt | 133 | 133 | B.1.1.228 | 0.405488 |
S | 681 | P681H | cCt | cAt | 132 | 132 | B.1.632 | 0.885906 |
S | 681 | P681H | cCt | cAt | 130 | 130 | B.1.415.1 | 0.984848 |
S | 681 | P681H | cCt | cAt | 128 | 128 | B.1.617.2 | 0.000482 |
S | 681 | P681H | cCt | cAt | 123 | 123 | AZ.2.1 | 1 |
S | 681 | P681H | cCt | cAt | 119 | 119 | AZ.6 | 1 |
S | 681 | P681H | cCt | cAt | 115 | 115 | B.1.258 | 0.007653 |
S | 681 | P681H | cCt | cAt | 106 | 106 | B.1.375 | 0.086885 |
S | 681 | P681H | cCt | cAt | 102 | 102 | AY.103 | 0.000633 |
S | 681 | P681H | cCt | cAt | 102 | 102 | B.1.177 | 0.001343 |
S | 681 | P681H | cCt | cAt | 99 | 99 | B.1.530 | 0.707143 |
S | 681 | P681H | cCt | cAt | 85 | 85 | C.16 | 0.090138 |
S | 681 | P681H | cCt | cAt | 79 | 79 | B.1.1.1 | 0.025809 |
S | 681 | P681H | cCt | cAt | 79 | 79 | Q.4 | 0.035925 |
S | 681 | P681H | cCt | cAt | 77 | 77 | B.1.320 | 0.09589 |
S | 681 | P681H | cCt | cAt | 70 | 70 | B.1.629 | 0.933333 |
S | 681 | P681H | cCt | cAt | 67 | 67 | B.1.1.263 | 0.104361 |
S | 681 | P681H | cCt | cAt | 66 | 66 | AY.4 | 0.000103 |
S | 681 | P681H | cCt | cAt | 62 | 62 | B.1.1.161 | 0.219081 |
S | 681 | P681H | cCt | cAt | 62 | 62 | B.1.429 | 0.001459 |
S | 681 | P681H | cCt | cAt | 61 | 61 | B.1.258.24 | 0.655914 |
S | 681 | P681H | cCt | cAt | 60 | 60 | B.1.462 | 0.434783 |
S | 681 | P681H | cCt | cAt | 59 | 59 | B.1.1.336 | 0.983333 |
S | 681 | P681H | cCt | cAt | 58 | 58 | B.1.1.338 | 1 |
S | 681 | P681H | cCt | cAt | 58 | 58 | B.1.36 | 0.008462 |
S | 681 | P681H | cCt | cAt | 58 | 58 | Q.5 | 0.983051 |
S | 681 | P681H | cCt | cAt | 57 | 57 | B.1.595 | 0.014875 |
S | 681 | P681H | cCt | cAt | 56 | 56 | AY.44 | 0.000341 |
S | 681 | P681H | cCt | cAt | 56 | 56 | B.1.526 | 0.001316 |
S | 681 | P681H | cCt | cAt | 54 | 54 | AY.43 | 0.000239 |
S | 681 | P681H | cCt | cAt | 54 | 54 | B | 0.006902 |
S | 681 | P681H | cCt | cAt | 54 | 54 | B.1.1.409 | 0.152975 |
S | 681 | P681H | cCt | cAt | 53 | 53 | B.1.1.522 | 0.913793 |
S | 681 | P681H | cCt | cAt | 52 | 52 | B.1.351 | 0.001546 |
S | 681 | P681H | cCt | cAt | 49 | 49 | B.1.221 | 0.003481 |
S | 681 | P681H | cCt | cAt | 47 | 47 | B.1.36.8 | 0.047 |
S | 681 | P681H | cCt | cAt | 46 | 46 | B.1.1.466 | 0.4 |
S | 681 | P681H | cCt | cAt | 46 | 46 | B.1.470 | 0.064607 |
S | 681 | P681H | cCt | cAt | 45 | 45 | AY.25 | 0.000271 |
S | 681 | P681H | cCt | cAt | 45 | 45 | XA | 1 |
S | 681 | P681H | cCt | cAt | 44 | 44 | B.1.36.29 | 0.022763 |
S | 681 | P681H | cCt | cAt | 43 | 43 | B.1.1.465 | 0.671875 |
S | 681 | P681H | cCt | cAt | 41 | 41 | B.1.177.7 | 0.006759 |
S | 681 | P681H | cCt | cAt | 41 | 41 | B.1.189 | 0.175966 |
S | 681 | P681H | cCt | cAt | 41 | 41 | B.6 | 0.037307 |
S | 681 | P681H | cCt | cAt | 38 | 38 | B.1.1.274 | 0.191919 |
S | 681 | P681H | cCt | cAt | 35 | 35 | B.1.1.216 | 0.031167 |
S | 681 | P681H | cCt | cAt | 34 | 34 | B.1.399 | 0.065764 |
S | 681 | P681H | cCt | cAt | 33 | 33 | B.1.468 | 0.188571 |
S | 681 | P681H | cCt | cAt | 33 | 33 | C.37 | 0.00383 |
S | 681 | P681H | cCt | cAt | 29 | 29 | AY.29 | 0.000457 |
S | 681 | P681H | cCt | cAt | 29 | 29 | C.36 | 0.026412 |
S | 681 | P681H | cCt | cAt | 28 | 28 | B.1.1.63 | 0.010802 |
S | 681 | P681H | cCt | cAt | 28 | 28 | B.1.324 | 0.044944 |
S | 681 | P681H | cCt | cAt | 28 | 28 | P.1.12 | 0.013553 |
S | 681 | P681H | cCt | cAt | 26 | 26 | B.1.1.528 | 0.125 |
S | 681 | P681H | cCt | cAt | 24 | 24 | P.1.17 | 0.003882 |
S | 681 | P681H | cCt | cAt | 22 | 22 | A | 0.008514 |
S | 681 | P681H | cCt | cAt | 22 | 22 | B.1.1.189 | 0.033283 |
S | 681 | P681H | cCt | cAt | 22 | 22 | B.1.1.220 | 0.040892 |
S | 681 | P681H | cCt | cAt | 22 | 22 | B.1.1.222 | 0.004488 |
S | 681 | P681H | cCt | cAt | 21 | 21 | B.1.1.312 | 0.040153 |
S | 681 | P681H | cCt | cAt | 21 | 21 | B.1.1.46 | 0.091703 |
S | 681 | P681H | cCt | cAt | 21 | 21 | B.1.1.507 | 0.182609 |
S | 681 | P681H | cCt | cAt | 20 | 20 | B.1.1.28 | 0.006225 |
S | 681 | P681H | cCt | cAt | 18 | 18 | B.1.416 | 0.022843 |
S | 681 | P681H | cCt | cAt | 18 | 18 | P.1.16 | 0.006734 |
S | 681 | P681H | cCt | cAt | 17 | 17 | B.1.1.319 | 0.298246 |
S | 681 | P681H | cCt | cAt | 15 | 15 | B.1.1.163 | 0.114504 |
S | 681 | P681H | cCt | cAt | 15 | 15 | B.1.36.1 | 0.017104 |
S | 681 | P681H | cCt | cAt | 15 | 15 | C.1.2 | 0.06383 |
S | 681 | P681H | cCt | cAt | 14 | 14 | B.1.160 | 0.000437 |
S | 681 | P681H | cCt | cAt | 14 | 14 | B.1.580 | 0.056911 |
S | 681 | P681H | cCt | cAt | 14 | 14 | P.1.15 | 0.003253 |
S | 681 | P681H | cCt | cAt | 13 | 13 | AY.20 | 0.000505 |
S | 681 | P681H | cCt | cAt | 13 | 13 | AY.4.2.1 | 0.001937 |
S | 681 | P681H | cCt | cAt | 13 | 13 | B.1.1.205 | 0.048327 |
S | 681 | P681H | cCt | cAt | 13 | 13 | B.1.157 | 0.038806 |
S | 681 | P681H | cCt | cAt | 12 | 12 | A.19 | 0.113208 |
S | 681 | P681H | cCt | cAt | 12 | 12 | AY.26 | 0.00034 |
S | 681 | P681H | cCt | cAt | 12 | 12 | AY.74 | 0.001388 |
S | 681 | P681H | cCt | cAt | 12 | 12 | B.1.1.10 | 0.013378 |
S | 681 | P681H | cCt | cAt | 12 | 12 | B.1.258.17 | 0.001248 |
S | 681 | P681H | cCt | cAt | 12 | 12 | B.1.574 | 0.025806 |
S | 681 | P681H | cCt | cAt | 11 | 11 | 0.611111 | |
S | 681 | P681H | cCt | cAt | 11 | 11 | AY.42 | 0.000443 |
S | 681 | P681H | cCt | cAt | 11 | 11 | AY.99.2 | 0.001014 |
S | 681 | P681H | cCt | cAt | 11 | 11 | B.1.1.269 | 0.014885 |
S | 681 | P681H | cCt | cAt | 11 | 11 | B.1.1.317 | 0.004529 |
S | 681 | P681H | cCt | cAt | 11 | 11 | B.1.367 | 0.008716 |
S | 681 | P681H | cCt | cAt | 11 | 11 | C.36.3 | 0.006239 |
S | 681 | P681H | cCt | cAt | 10 | 10 | AY.39 | 0.000247 |
S | 681 | P681H | cCt | cAt | 9 | 9 | AY.102 | 0.000239 |
S | 681 | P681H | cCt | cAt | 9 | 9 | AY.3 | 0.00009 |
S | 681 | P681H | cCt | cAt | 9 | 9 | AY.93 | 0.002458 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.1.275 | 0.101124 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.139 | 0.006598 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.533 | 0.086538 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.617.1 | 0.001161 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.638 | 0.473684 |
S | 681 | P681H | cCt | cAt | 9 | 9 | C.35 | 0.006966 |
S | 681 | P681H | cCt | cAt | 8 | 8 | A.2.5 | 0.003992 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.17 | 0.133333 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.224 | 0.114286 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.294 | 0.010127 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.70 | 0.002729 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.234 | 0.001056 |
S | 681 | P681H | cCt | cAt | 8 | 8 | R.1 | 0.00072 |
S | 681 | P681H | cCt | cAt | 7 | 7 | AY.106 | 0.002344 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.225 | 0.05036 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.25 | 0.00398 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.277 | 0.005311 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.447 | 0.25 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.369 | 0.001997 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AT.1 | 0.030769 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.110 | 0.000676 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.4.2 | 0.00013 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.47 | 0.000187 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.75.1 | 0.001082 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.9.2 | 0.00022 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.1.171 | 0.022059 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.1.485 | 0.1 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.241 | 0.00487 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.330 | 0.171429 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.619 | 0.005226 |
S | 681 | P681H | cCt | cAt | 6 | 6 | P.5 | 0.082192 |
S | 681 | P681H | cCt | cAt | 5 | 5 | A.30 | 0.714286 |
S | 681 | P681H | cCt | cAt | 5 | 5 | AY.95 | 0.003805 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.1.194 | 0.024752 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.177.31 | 0.057471 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.214 | 0.018315 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.311 | 0.001373 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.380 | 0.033113 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.396 | 0.003529 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.411 | 0.018519 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.497 | 0.001574 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.599 | 0.018248 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.602 | 0.03268 |
S | 681 | P681H | cCt | cAt | 4 | 4 | A.1 | 0.001127 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.101 | 0.001962 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.23 | 0.000279 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.45 | 0.000487 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.54 | 0.000381 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.61 | 0.000419 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.68 | 0.001095 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.75 | 0.000224 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.96 | 0.008299 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.13 | 0.142857 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.142 | 0.070175 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.198 | 0.005874 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.236 | 0.027586 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.288 | 0.007663 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.348 | 0.003185 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.372 | 0.002755 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.389 | 0.024242 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.39 | 0.002039 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.419 | 0.02963 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.44 | 0.009639 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.523 | 0.00625 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.160.10 | 0.032258 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.214.2 | 0.002398 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.366 | 0.019512 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.551 | 0.005161 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.560 | 0.018519 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.633 | 0.166667 |
S | 681 | P681H | cCt | cAt | 4 | 4 | C.17 | 0.222222 |
S | 681 | P681H | cCt | cAt | 4 | 4 | C.36.3.1 | 0.01087 |
S | 681 | P681H | cCt | cAt | 4 | 4 | P.1.14 | 0.000191 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.100 | 0.000138 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.113 | 0.000427 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.118 | 0.000188 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.120 | 0.000112 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.24 | 0.001293 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.5 | 0.000062 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.53 | 0.000863 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.70 | 0.000626 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.92 | 0.000862 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.133 | 0.025424 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.174 | 0.010135 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.265 | 0.009464 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.27 | 0.016949 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.299 | 0.036585 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.344 | 0.032258 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.398 | 0.009677 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.54 | 0.009063 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.99 | 0.071429 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.177.81 | 0.000568 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.237 | 0.014925 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.260 | 0.010033 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.351.3 | 0.002629 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.36.10 | 0.014354 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.466.2 | 0.001174 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.509 | 0.002597 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.525 | 0.000339 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.577 | 0.002062 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.636 | 0.020134 |
S | 681 | P681H | cCt | cAt | 3 | 3 | N.5 | 0.0053 |
S | 681 | P681H | cCt | cAt | 3 | 3 | P.1.13 | 0.002695 |
S | 681 | P681H | cCt | cAt | 2 | 2 | A.2 | 0.001324 |
S | 681 | P681H | cCt | cAt | 2 | 2 | A.2.5.1 | 0.009615 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.117 | 0.000169 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.119 | 0.000071 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.12 | 0.000632 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.3.1 | 0.000171 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.36 | 0.000296 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.39.1 | 0.000079 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.41 | 0.000588 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.46.3 | 0.001867 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.46.6 | 0.000144 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.98.1 | 0.000097 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.117 | 0.019417 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.121 | 0.004854 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.135 | 0.00939 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.137 | 0.025 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.141 | 0.004024 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.148 | 0.017544 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.160 | 0.047619 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.192 | 0.004619 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.203 | 0.033898 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.237 | 0.010811 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.254 | 0.022472 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.291 | 0.001485 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.298 | 0.001724 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.327 | 0.2 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.329 | 0.007692 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.33 | 0.000842 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.354 | 0.008772 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.37 | 0.000386 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.370 | 0.025316 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.374 | 0.004751 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.385 | 0.008929 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.416 | 0.00181 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.430 | 0.083333 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.448 | 0.004065 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.462 | 0.017241 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.524 | 0.041667 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.525 | 0.010929 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.53 | 0.027397 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.8 | 0.007168 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.83 | 0.00542 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.89 | 0.012121 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.111 | 0.00235 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.177.12 | 0.000303 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.177.41 | 0.005 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.177.44 | 0.001038 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.199 | 0.008264 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.247 | 0.029851 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.517 | 0.000854 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.564 | 0.000852 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.625 | 0.004706 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.634 | 0.006849 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.78 | 0.017094 |
S | 681 | P681H | cCt | cAt | 2 | 2 | C.38 | 0.016129 |
S | 681 | P681H | cCt | cAt | 2 | 2 | P.1.10.1 | 0.01626 |
S | 681 | P681H | cCt | cAt | 2 | 2 | P.2 | 0.000373 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.2.5.2 | 0.001572 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.21 | 0.00277 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.23.1 | 0.000704 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.25 | 0.018182 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.27 | 0.001656 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.7 | 0.055556 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AU.2 | 0.002421 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AU.3 | 0.00211 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.108 | 0.001103 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.120.1 | 0.000321 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.121 | 0.000135 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.13 | 0.000161 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.14 | 0.000088 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.19 | 0.00114 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.27 | 0.000065 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.38 | 0.000499 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.46 | 0.000104 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.46.2 | 0.000635 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.46.5 | 0.000198 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.5.4 | 0.000277 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.52 | 0.000814 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.62 | 0.000436 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.65 | 0.000533 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.67 | 0.000464 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.73 | 0.000665 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.79 | 0.001211 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.85 | 0.000427 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.87 | 0.000833 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.9 | 0.000068 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.99 | 0.001049 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.99.1 | 0.001553 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.122 | 0.045455 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.128 | 0.007092 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.145 | 0.037037 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.158 | 0.012195 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.170 | 0.001247 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.175 | 0.076923 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.187 | 0.00885 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.221 | 0.010101 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.231 | 0.003096 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.261 | 0.008621 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.280 | 0.003086 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.301 | 0.001179 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.304 | 0.002809 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.311 | 0.000358 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.326 | 0.001761 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.328 | 0.016949 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.34 | 0.013158 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.343 | 0.020833 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.387 | 0.058824 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.388 | 0.045455 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.397 | 0.002252 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.399 | 0.090909 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.407 | 0.041667 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.410 | 0.037037 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.422 | 0.045455 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.45 | 0.014085 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.464 | 0.001473 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.515 | 0.02 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.55 | 0.012987 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.56 | 0.017857 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.160.14 | 0.002119 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.167 | 0.007812 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.169 | 0.014925 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.170 | 0.00431 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.21 | 0.000076 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.35 | 0.000691 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.47 | 0.012987 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.54 | 0.000606 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.8 | 0.000752 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.82 | 0.000477 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.9 | 0.001332 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.179 | 0.003759 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.192 | 0.009259 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.206 | 0.000816 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.214.3 | 0.007143 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.229 | 0.009709 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.239 | 0.001221 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.243.1 | 0.022222 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.265 | 0.001271 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.279 | 0.000514 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.301 | 0.005917 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.349 | 0.000715 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.351.5 | 0.0006 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.36.22 | 0.001208 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.36.27 | 0.000763 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.361 | 0.001289 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.389 | 0.001002 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.393 | 0.028571 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.395 | 0.007042 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.397 | 0.004854 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.417 | 0.028571 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.432 | 0.011236 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.433 | 0.003195 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.506 | 0.02381 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.521 | 0.004975 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.527 | 0.003704 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.538 | 0.008065 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.545 | 0.014493 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.558 | 0.004566 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.565 | 0.00081 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.567 | 0.003333 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.568 | 0.001111 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.569 | 0.014493 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.581 | 0.009434 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.582 | 0.000491 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.589 | 0.007576 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.590 | 0.004545 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.600 | 0.005848 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.612 | 0.002653 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.630 | 0.005236 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.88.1 | 0.004808 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.94 | 0.027027 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.35 | 0.007812 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.40 | 0.000364 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.55 | 0.00295 |
S | 681 | P681H | cCt | cAt | 1 | 1 | C.26 | 0.007353 |
S | 681 | P681H | cCt | cAt | 1 | 1 | C.4 | 0.01 |
S | 681 | P681H | cCt | cAt | 1 | 1 | N.3 | 0.005814 |
S | 681 | P681H | cCt | cAt | 1 | 1 | P.1.10 | 0.000269 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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