CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 681 | P681R | nonsyn | cCt | cGt | 2762920 | 2762560 | 0.99987 | 23603-23605 | |
S | 681 | P681R | nonsyn | cCT | cGC | 2762920 | 304 | 0.000110029 | 23603-23605 | |
S | 681 | P681R | nonsyn | cCT | cGG | 2762920 | 31 | 0.00001122 | 23603-23605 | |
S | 681 | P681R | nonsyn | cCT | cGA | 2762920 | 25 | 0.0000090484 | 23603-23605 | |
S | 681 | P681H | nonsyn | cCt | cAt | 1223571 | 1223473 | 0.99992 | 23603-23605 | |
S | 681 | P681H | nonsyn | cCT | cAC | 1223571 | 98 | 0.0000800934 | 23603-23605 | |
S | 681 | P681L | nonsyn | cCt | cTt | 1489 | 1489 | 1 | 23603-23605 | |
S | 681 | P681Y | nonsyn | CCt | TAt | 155 | 155 | 1 | 23603-23605 | |
S | 681 | P681P | syn | ccT | ccC | 146 | 74 | 0.506849 | 23603-23605 | |
S | 681 | P681P | syn | ccT | ccA | 146 | 49 | 0.335616 | 23603-23605 | |
S | 681 | P681P | syn | ccT | ccG | 146 | 23 | 0.157534 | 23603-23605 | |
S | 681 | P681S | nonsyn | Cct | Tct | 132 | 131 | 0.992424 | 23603-23605 | |
S | 681 | P681S | nonsyn | CCt | AGt | 132 | 1 | 0.00757576 | 23603-23605 | |
S | 681 | P681del | del | CCT | --- | 85 | 85 | 1 | 23603-23605 | |
S | 681 | P681C | nonsyn | CCt | TGt | 23 | 23 | 1 | 23603-23605 | |
S | 681 | P681del1 | del | Cct | -ct | 14 | 12 | 0.857143 | 23603-23605 | |
S | 681 | P681del1 | del | ccT | cc- | 14 | 2 | 0.142857 | 23603-23605 | |
S | 681 | P681T | nonsyn | Cct | Act | 12 | 12 | 1 | 23603-23605 | |
S | 681 | P681Q | nonsyn | cCT | cAG | 5 | 3 | 0.6 | 23603-23605 | |
S | 681 | P681Q | nonsyn | cCT | cAA | 5 | 2 | 0.4 | 23603-23605 | |
S | 681 | P681A | nonsyn | Cct | Gct | 2 | 2 | 1 | 23603-23605 | |
S | 681 | P681G | nonsyn | CCt | GGt | 2 | 2 | 1 | 23603-23605 | |
S | 681 | P681F | nonsyn | CCt | TTt | 2 | 2 | 1 | 23603-23605 | |
S | 681 | P681del2 | del | cCT | c-- | 1 | 1 | 1 | 23603-23605 | |
S | 681 | P681X | nonsyn | CCT | TAG | 1 | 1 | 1 | 23603-23605 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 681 | P681R | cCt | cGt | 2762560 | 2762920 | All | 0.528372 |
S | 681 | P681R | cCT | cGC | 304 | 2762920 | All | 0.000058 |
S | 681 | P681R | cCT | cGG | 31 | 2762920 | All | 0.000006 |
S | 681 | P681R | cCT | cGA | 25 | 2762920 | All | 0.000005 |
S | 681 | P681H | cCt | cAt | 1223473 | 1223571 | All | 0.234004 |
S | 681 | P681H | cCT | cAC | 98 | 1223571 | All | 0.000019 |
S | 681 | P681H | cCt | cAt | 1112441 | 1112533 | B.1.1.7 | 0.995883 |
S | 681 | P681H | cCT | cAC | 92 | 1112533 | B.1.1.7 | 0.000082 |
S | 681 | P681R | cCt | cGt | 641813 | 641875 | AY.4 | 0.998932 |
S | 681 | P681R | cCT | cGC | 62 | 641875 | AY.4 | 0.000096 |
S | 681 | P681R | cCt | cGt | 264157 | 264167 | B.1.617.2 | 0.994661 |
S | 681 | P681R | cCT | cGC | 10 | 264167 | B.1.617.2 | 0.000038 |
S | 681 | P681R | cCt | cGt | 224371 | 224371 | AY.43 | 0.994068 |
S | 681 | P681R | cCt | cGt | 165836 | 165844 | AY.25 | 0.997474 |
S | 681 | P681R | cCT | cGC | 7 | 165844 | AY.25 | 0.000042 |
S | 681 | P681R | cCT | cGA | 1 | 165844 | AY.25 | 0.000006 |
S | 681 | P681R | cCt | cGt | 163492 | 163539 | AY.44 | 0.995137 |
S | 681 | P681R | cCT | cGC | 44 | 163539 | AY.44 | 0.000268 |
S | 681 | P681R | cCT | cGG | 2 | 163539 | AY.44 | 0.000012 |
S | 681 | P681R | cCT | cGA | 1 | 163539 | AY.44 | 0.000006 |
S | 681 | P681R | cCt | cGt | 160438 | 160443 | AY.103 | 0.996169 |
S | 681 | P681R | cCT | cGC | 5 | 160443 | AY.103 | 0.000031 |
S | 681 | P681R | cCt | cGt | 100253 | 100318 | AY.3 | 0.997155 |
S | 681 | P681R | cCT | cGG | 24 | 100318 | AY.3 | 0.000239 |
S | 681 | P681R | cCT | cGC | 22 | 100318 | AY.3 | 0.000219 |
S | 681 | P681R | cCT | cGA | 19 | 100318 | AY.3 | 0.000189 |
S | 681 | P681R | cCt | cGt | 63336 | 63336 | AY.29 | 0.999038 |
S | 681 | P681R | cCt | cGt | 48346 | 48348 | AY.5 | 0.998307 |
S | 681 | P681R | cCT | cGC | 2 | 48348 | AY.5 | 0.000041 |
S | 681 | P681R | cCt | cGt | 46079 | 46079 | AY.4.2 | 0.999393 |
S | 681 | P681R | cCt | cGt | 40198 | 40198 | AY.39 | 0.993353 |
S | 681 | P681R | cCt | cGt | 37622 | 37626 | AY.102 | 0.997508 |
S | 681 | P681R | cCT | cGC | 4 | 37626 | AY.102 | 0.000106 |
S | 681 | P681R | cCt | cGt | 35205 | 35212 | AY.26 | 0.996659 |
S | 681 | P681R | cCT | cGC | 7 | 35212 | AY.26 | 0.000198 |
S | 681 | P681R | cCt | cGt | 31932 | 32054 | AY.47 | 0.99325 |
S | 681 | P681R | cCT | cGC | 122 | 32054 | AY.47 | 0.003795 |
S | 681 | P681R | cCt | cGt | 28229 | 28229 | AY.119 | 0.996716 |
S | 681 | P681R | cCt | cGt | 27103 | 27105 | AY.9.2 | 0.995482 |
S | 681 | P681R | cCT | cGC | 1 | 27105 | AY.9.2 | 0.000037 |
S | 681 | P681R | cCT | cGG | 1 | 27105 | AY.9.2 | 0.000037 |
S | 681 | P681R | cCt | cGt | 26857 | 26857 | AY.120 | 0.998513 |
S | 681 | P681R | cCt | cGt | 25660 | 25661 | AY.20 | 0.997279 |
S | 681 | P681R | cCT | cGC | 1 | 25661 | AY.20 | 0.000039 |
S | 681 | P681R | cCt | cGt | 25144 | 25144 | AY.39.1 | 0.996039 |
S | 681 | P681H | cCt | cAt | 25132 | 25132 | B.1.1.519 | 0.998014 |
S | 681 | P681R | cCt | cGt | 24764 | 24764 | AY.42 | 0.996259 |
S | 681 | P681R | cCt | cGt | 24289 | 24289 | AY.6 | 0.998972 |
S | 681 | P681R | cCt | cGt | 21661 | 21661 | AY.100 | 0.99655 |
S | 681 | P681R | cCt | cGt | 20582 | 20583 | AY.98.1 | 0.996804 |
S | 681 | P681R | cCT | cGC | 1 | 20583 | AY.98.1 | 0.000048 |
S | 681 | P681R | cCt | cGt | 17789 | 17790 | AY.75 | 0.996583 |
S | 681 | P681R | cCT | cGC | 1 | 17790 | AY.75 | 0.000056 |
S | 681 | P681R | cCt | cGt | 15915 | 15915 | AY.118 | 0.997056 |
S | 681 | P681R | cCt | cGt | 15441 | 15441 | AY.27 | 0.999353 |
S | 681 | P681R | cCt | cGt | 14855 | 14855 | AY.33 | 0.991987 |
S | 681 | P681R | cCt | cGt | 14783 | 14783 | AY.9 | 0.999256 |
S | 681 | P681R | cCt | cGt | 14277 | 14277 | AY.23 | 0.995815 |
S | 681 | P681R | cCt | cGt | 13773 | 13773 | AY.46.6 | 0.994512 |
S | 681 | P681R | cCt | cGt | 12586 | 12587 | AY.98 | 0.994233 |
S | 681 | P681R | cCT | cGC | 1 | 12587 | AY.98 | 0.000079 |
S | 681 | P681R | cCt | cGt | 11896 | 11896 | AY.9.1 | 0.995981 |
S | 681 | P681R | cCt | cGt | 11791 | 11792 | AY.117 | 0.996535 |
S | 681 | P681R | cCT | cGG | 1 | 11792 | AY.117 | 0.000085 |
S | 681 | P681R | cCt | cGt | 11703 | 11703 | AY.3.1 | 0.997783 |
S | 681 | P681R | cCt | cGt | 11345 | 11345 | AY.14 | 0.998504 |
S | 681 | P681H | cCt | cAt | 11240 | 11240 | B.1.621 | 0.994954 |
S | 681 | P681R | cCt | cGt | 10732 | 10732 | AY.99.2 | 0.989033 |
S | 681 | P681R | cCt | cGt | 10457 | 10457 | AY.54 | 0.997044 |
S | 681 | P681R | cCt | cGt | 10283 | 10283 | AY.34 | 0.997091 |
S | 681 | P681R | cCt | cGt | 9440 | 9440 | AY.61 | 0.989103 |
S | 681 | P681R | cCt | cGt | 9355 | 9356 | AY.46 | 0.973668 |
S | 681 | P681R | cCT | cGC | 1 | 9356 | AY.46 | 0.000104 |
S | 681 | P681R | cCt | cGt | 8953 | 8953 | AY.4.5 | 0.962378 |
S | 681 | P681R | cCt | cGt | 8856 | 8856 | AY.7.1 | 0.998084 |
S | 681 | P681R | cCt | cGt | 8846 | 8846 | AY.110 | 0.996845 |
S | 681 | P681R | cCt | cGt | 8632 | 8632 | AY.74 | 0.998265 |
S | 681 | P681R | cCt | cGt | 8060 | 8060 | AY.45 | 0.980774 |
S | 681 | P681H | cCt | cAt | 7824 | 7824 | Q.1 | 0.988378 |
S | 681 | P681R | cCt | cGt | 7663 | 7664 | B.1.617.1 | 0.988264 |
S | 681 | P681R | cCT | cGA | 1 | 7664 | B.1.617.1 | 0.000129 |
S | 681 | P681H | cCt | cAt | 7600 | 7603 | B.1.243 | 0.528843 |
S | 681 | P681H | cCT | cAC | 3 | 7603 | B.1.243 | 0.000209 |
S | 681 | P681R | cCt | cGt | 7352 | 7358 | AY.121 | 0.994858 |
S | 681 | P681R | cCT | cGC | 6 | 7358 | AY.121 | 0.000812 |
S | 681 | P681R | cCt | cGt | 6985 | 6985 | AY.113 | 0.994589 |
S | 681 | P681H | cCt | cAt | 6887 | 6887 | Q.3 | 0.99884 |
S | 681 | P681R | cCt | cGt | 6695 | 6695 | AY.4.2.1 | 0.997467 |
S | 681 | P681R | cCt | cGt | 6661 | 6661 | AY.36 | 0.987254 |
S | 681 | P681R | cCt | cGt | 6207 | 6207 | AY.13 | 0.999195 |
S | 681 | P681R | cCt | cGt | 6074 | 6074 | AY.46.4 | 0.999177 |
S | 681 | P681H | cCt | cAt | 5875 | 5875 | Q.8 | 0.968832 |
S | 681 | P681R | cCt | cGt | 5483 | 5483 | AY.75.1 | 0.98864 |
S | 681 | P681R | cCt | cGt | 5447 | 5447 | AY.111 | 0.997619 |
S | 681 | P681R | cCt | cGt | 5345 | 5345 | AY.69 | 0.99776 |
S | 681 | P681R | cCt | cGt | 5100 | 5100 | AY.7 | 0.999608 |
S | 681 | P681R | cCt | cGt | 5029 | 5034 | AY.46.5 | 0.997817 |
S | 681 | P681R | cCT | cGC | 5 | 5034 | AY.46.5 | 0.000992 |
S | 681 | P681R | cCt | cGt | 4782 | 4783 | AY.70 | 0.997081 |
S | 681 | P681R | cCT | cGC | 1 | 4783 | AY.70 | 0.000209 |
S | 681 | P681R | cCt | cGt | 4534 | 4534 | AY.29.1 | 0.999779 |
S | 681 | P681H | cCt | cAt | 4502 | 4502 | B.1.1 | 0.08167 |
S | 681 | P681R | cCt | cGt | 4316 | 4316 | AY.114 | 0.997458 |
S | 681 | P681R | cCt | cGt | 4282 | 4282 | AY.35 | 0.997903 |
S | 681 | P681R | cCt | cGt | 3651 | 3651 | AY.93 | 0.996996 |
S | 681 | P681R | cCt | cGt | 3601 | 3601 | AY.5.4 | 0.996403 |
S | 681 | P681R | cCt | cGt | 3574 | 3574 | AY.68 | 0.978374 |
S | 681 | P681R | cCt | cGt | 3468 | 3468 | AY.53 | 0.997125 |
S | 681 | P681R | cCt | cGt | 3458 | 3458 | AY.92 | 0.993393 |
S | 681 | P681R | cCt | cGt | 3454 | 3454 | AY.116 | 0.990536 |
S | 681 | P681R | cCt | cGt | 3354 | 3354 | AY.41 | 0.985891 |
S | 681 | P681H | cCt | cAt | 3293 | 3293 | B.1.1.318 | 0.993663 |
S | 681 | P681H | cCt | cAt | 3278 | 3278 | B.1.575 | 0.994539 |
S | 681 | P681R | cCt | cGt | 3205 | 3206 | AY.116.1 | 0.998131 |
S | 681 | P681R | cCT | cGG | 1 | 3206 | AY.116.1 | 0.000311 |
S | 681 | P681R | cCt | cGt | 3152 | 3152 | AY.37 | 0.996207 |
S | 681 | P681R | cCt | cGt | 3139 | 3139 | AY.12 | 0.992099 |
S | 681 | P681R | cCt | cGt | 3106 | 3106 | AY.120.1 | 0.997111 |
S | 681 | P681H | cCt | cAt | 3098 | 3101 | P.1.7 | 0.989144 |
S | 681 | P681H | cCT | cAC | 3 | 3101 | P.1.7 | 0.000958 |
S | 681 | P681R | cCt | cGt | 2962 | 2962 | AY.106 | 0.991962 |
S | 681 | P681R | cCt | cGt | 2948 | 2948 | AY.5.3 | 0.994602 |
S | 681 | P681H | cCt | cAt | 2818 | 2818 | B.1.628 | 0.992953 |
S | 681 | P681R | cCt | cGt | 2798 | 2798 | AY.2 | 0.996439 |
S | 681 | P681H | cCt | cAt | 2722 | 2722 | B.1 | 0.024932 |
S | 681 | P681R | cCt | cGt | 2585 | 2585 | AY.16 | 0.981397 |
S | 681 | P681R | cCt | cGt | 2585 | 2585 | AY.63 | 1 |
S | 681 | P681R | cCt | cGt | 2521 | 2521 | AY.30 | 0.997626 |
S | 681 | P681R | cCt | cGt | 2516 | 2516 | AY.1 | 0.995647 |
S | 681 | P681R | cCt | cGt | 2420 | 2420 | AY.4.4 | 0.99018 |
S | 681 | P681R | cCt | cGt | 2396 | 2396 | AY.23.1 | 1 |
S | 681 | P681R | cCt | cGt | 2329 | 2329 | AY.85 | 0.994874 |
S | 681 | P681R | cCt | cGt | 2319 | 2319 | B.1.466.2 | 0.907277 |
S | 681 | P681R | cCt | cGt | 2298 | 2298 | AY.24 | 0.990517 |
S | 681 | P681R | cCt | cGt | 2288 | 2288 | AY.62 | 0.99695 |
S | 681 | P681R | cCt | cGt | 2269 | 2270 | AY.84 | 0.992563 |
S | 681 | P681R | cCT | cGA | 1 | 2270 | AY.84 | 0.000437 |
S | 681 | P681R | cCt | cGt | 2253 | 2253 | AY.94 | 0.997344 |
S | 681 | P681R | cCt | cGt | 2150 | 2151 | AY.67 | 0.998143 |
S | 681 | P681R | cCT | cGA | 1 | 2151 | AY.67 | 0.000464 |
S | 681 | P681R | cCt | cGt | 2147 | 2147 | AY.48 | 0.998605 |
S | 681 | P681R | cCt | cGt | 2134 | 2134 | AY.107 | 0.994408 |
S | 681 | P681R | cCt | cGt | 2104 | 2104 | Q.4 | 0.956799 |
S | 681 | P681R | cCt | cGt | 2101 | 2101 | AY.16.1 | 0.987312 |
S | 681 | P681R | cCt | cGt | 2094 | 2094 | AY.71 | 0.994774 |
S | 681 | P681R | cCt | cGt | 2029 | 2029 | AY.101 | 0.995096 |
S | 681 | P681H | cCt | cAt | 2014 | 2014 | B.1.2 | 0.017734 |
S | 681 | P681R | cCt | cGt | 2003 | 2003 | AY.120.2.1 | 0.998007 |
S | 681 | P681R | cCt | cGt | 1973 | 1973 | AY.38 | 0.985022 |
S | 681 | P681H | cCt | cAt | 1968 | 1968 | B.1.621.1 | 0.995448 |
S | 681 | P681R | cCt | cGt | 1915 | 1915 | B.1 | 0.01754 |
S | 681 | P681R | cCt | cGt | 1898 | 1898 | AY.34.1 | 0.967874 |
S | 681 | P681R | cCt | cGt | 1883 | 1883 | AY.10 | 0.99788 |
S | 681 | P681R | cCt | cGt | 1874 | 1874 | AY.32 | 0.99787 |
S | 681 | P681R | cCt | cGt | 1874 | 1874 | AY.59 | 0.992585 |
S | 681 | P681R | cCt | cGt | 1868 | 1868 | AY.65 | 0.995736 |
S | 681 | P681R | cCt | cGt | 1782 | 1782 | AY.7.2 | 0.996644 |
S | 681 | P681H | cCt | cAt | 1780 | 1780 | B.1.623 | 0.954936 |
S | 681 | P681R | cCt | cGt | 1675 | 1675 | AY.64 | 0.997024 |
S | 681 | P681R | cCt | cGt | 1650 | 1650 | AY.8 | 1 |
S | 681 | P681H | cCt | cAt | 1625 | 1625 | Q.2 | 0.996933 |
S | 681 | P681R | cCt | cGt | 1563 | 1563 | AY.46.2 | 0.993011 |
S | 681 | P681R | cCt | cGt | 1547 | 1547 | AY.105 | 0.994855 |
S | 681 | P681R | cCt | cGt | 1520 | 1520 | AY.57 | 0.997375 |
S | 681 | P681R | cCt | cGt | 1500 | 1500 | AY.73 | 0.998004 |
S | 681 | P681L | cCt | cTt | 1489 | 1489 | All | 0.000285 |
S | 681 | P681R | cCt | cGt | 1461 | 1461 | AY.90 | 1 |
S | 681 | P681R | cCt | cGt | 1400 | 1400 | A.23.1 | 0.985915 |
S | 681 | P681R | cCt | cGt | 1378 | 1378 | AY.39.1.1 | 0.998551 |
S | 681 | P681R | cCt | cGt | 1353 | 1353 | AY.4.1 | 0.997788 |
S | 681 | P681R | cCt | cGt | 1336 | 1336 | AY.91 | 0.975895 |
S | 681 | P681R | cCt | cGt | 1335 | 1335 | AY.109 | 0.987426 |
S | 681 | P681R | cCt | cGt | 1247 | 1247 | AY.50 | 0.996803 |
S | 681 | P681R | cCt | cGt | 1236 | 1236 | AY.95 | 0.940639 |
S | 681 | P681R | cCt | cGt | 1224 | 1224 | AY.52 | 0.996743 |
S | 681 | P681R | cCt | cGt | 1203 | 1203 | AY.86 | 0.99834 |
S | 681 | P681H | cCt | cAt | 1203 | 1203 | AZ.2 | 0.987685 |
S | 681 | P681R | cCt | cGt | 1195 | 1195 | AY.87 | 0.995004 |
S | 681 | P681R | cCt | cGt | 1182 | 1182 | AY.4.3 | 0.994949 |
S | 681 | P681H | cCt | cAt | 1152 | 1152 | AZ.1 | 0.999133 |
S | 681 | P681R | cCt | cGt | 1124 | 1125 | AY.88 | 0.993811 |
S | 681 | P681R | cCT | cGA | 1 | 1125 | AY.88 | 0.000884 |
S | 681 | P681R | cCt | cGt | 1100 | 1100 | AY.51 | 1 |
S | 681 | P681R | cCt | cGt | 1088 | 1088 | AY.58 | 0.987296 |
S | 681 | P681R | cCt | cGt | 1082 | 1082 | AY.55 | 0.992661 |
S | 681 | P681R | cCt | cGt | 1061 | 1061 | AY.60 | 0.99531 |
S | 681 | P681R | cCt | cGt | 1053 | 1053 | AY.46.3 | 0.983193 |
S | 681 | P681H | cCt | cAt | 1048 | 1048 | B.1.620 | 0.991485 |
S | 681 | P681R | cCt | cGt | 1036 | 1036 | AY.40 | 0.999036 |
S | 681 | P681H | cCt | cAt | 1005 | 1005 | P.1 | 0.015833 |
S | 681 | P681R | cCt | cGt | 971 | 971 | AY.46.1 | 0.99692 |
S | 681 | P681R | cCt | cGt | 938 | 938 | AY.99 | 0.98426 |
S | 681 | P681R | cCt | cGt | 935 | 935 | AY.66 | 1 |
S | 681 | P681R | cCt | cGt | 899 | 899 | AY.108 | 0.99118 |
S | 681 | P681H | cCt | cAt | 896 | 896 | Q.7 | 0.995556 |
S | 681 | P681R | cCt | cGt | 887 | 887 | AY.77 | 1 |
S | 681 | P681R | cCt | cGt | 886 | 886 | AY.80 | 1 |
S | 681 | P681R | cCt | cGt | 869 | 869 | AY.19 | 0.990878 |
S | 681 | P681H | cCt | cAt | 842 | 842 | B.1.1.207 | 0.995272 |
S | 681 | P681R | cCt | cGt | 823 | 823 | AY.79 | 0.996368 |
S | 681 | P681R | cCt | cGt | 771 | 771 | B.1.551 | 0.994839 |
S | 681 | P681R | cCt | cGt | 762 | 762 | AY.120.2 | 0.979434 |
S | 681 | P681R | cCt | cGt | 747 | 747 | AY.11 | 1 |
S | 681 | P681R | cCt | cGt | 735 | 735 | AY.72 | 1 |
S | 681 | P681R | cCt | cGt | 734 | 734 | AY.82 | 0.995929 |
S | 681 | P681H | cCt | cAt | 714 | 714 | P.1.1 | 0.226811 |
S | 681 | P681H | cCt | cAt | 657 | 657 | AZ.3 | 0.99848 |
S | 681 | P681R | cCt | cGt | 649 | 649 | AY.39.2 | 1 |
S | 681 | P681R | cCt | cGt | 647 | 647 | AY.78 | 0.996918 |
S | 681 | P681R | cCt | cGt | 640 | 640 | AY.99.1 | 0.993789 |
S | 681 | P681H | cCt | cAt | 621 | 621 | P.3 | 0.990431 |
S | 681 | P681R | cCt | cGt | 620 | 620 | AY.56 | 0.995185 |
S | 681 | P681R | cCt | cGt | 586 | 586 | AY.97 | 0.996599 |
S | 681 | P681R | cCt | cGt | 578 | 578 | AY.83 | 0.996552 |
S | 681 | P681R | cCt | cGt | 524 | 524 | AY.21 | 0.994307 |
S | 681 | P681H | cCt | cAt | 514 | 514 | P.1.6 | 1 |
S | 681 | P681R | cCt | cGt | 513 | 513 | AY.28 | 0.969754 |
S | 681 | P681H | cCt | cAt | 508 | 508 | B.1.474 | 0.965779 |
S | 681 | P681R | cCt | cGt | 506 | 506 | AY.9.2.1 | 1 |
S | 681 | P681R | cCt | cGt | 501 | 501 | AY.81 | 0.998008 |
S | 681 | P681R | cCt | cGt | 498 | 498 | AY.104 | 0.988095 |
S | 681 | P681H | cCt | cAt | 491 | 491 | B.1.627 | 0.991919 |
S | 681 | P681R | cCt | cGt | 477 | 477 | AY.22 | 0.997908 |
S | 681 | P681H | cCt | cAt | 475 | 475 | B.1.400 | 0.203775 |
S | 681 | P681R | cCt | cGt | 473 | 473 | AU.3 | 0.99789 |
S | 681 | P681R | cCt | cGt | 449 | 449 | AY.15 | 0.997778 |
S | 681 | P681R | cCt | cGt | 412 | 412 | AU.2 | 0.997579 |
S | 681 | P681R | cCt | cGt | 406 | 406 | AY.5.2 | 1 |
S | 681 | P681R | cCt | cGt | 399 | 399 | AY.96 | 0.827801 |
S | 681 | P681H | cCt | cAt | 396 | 396 | B.1.575.1 | 0.965854 |
S | 681 | P681H | cCt | cAt | 391 | 391 | B.1.637 | 0.028571 |
S | 681 | P681H | cCt | cAt | 355 | 355 | B.1.1.351 | 0.99162 |
S | 681 | P681L | cCt | cTt | 340 | 340 | B.1.570 | 1 |
S | 681 | P681R | cCt | cGt | 334 | 334 | B.1.617.3 | 0.997015 |
S | 681 | P681R | cCt | cGt | 311 | 311 | AY.49 | 0.99361 |
S | 681 | P681R | cCt | cGt | 305 | 305 | B.1.1.25 | 0.173394 |
S | 681 | P681H | cCt | cAt | 297 | 297 | AZ.4 | 0.996644 |
S | 681 | P681H | cCt | cAt | 296 | 296 | B.1.631 | 0.996633 |
S | 681 | P681H | cCt | cAt | 285 | 285 | AZ.5 | 1 |
S | 681 | P681R | cCt | cGt | 265 | 265 | AY.5.1 | 0.996241 |
S | 681 | P681H | cCt | cAt | 259 | 259 | B.1.1.306 | 0.113547 |
S | 681 | P681R | cCt | cGt | 245 | 245 | AY.91.1 | 0.995935 |
S | 681 | P681H | cCt | cAt | 240 | 240 | B.1.1.50 | 0.162933 |
S | 681 | P681H | cCt | cAt | 230 | 230 | B.1.469 | 0.830325 |
S | 681 | P681R | cCt | cGt | 223 | 223 | B | 0.028502 |
S | 681 | P681H | cCt | cAt | 214 | 214 | B.1.576 | 0.194016 |
S | 681 | P681R | cCt | cGt | 209 | 209 | P.1.8 | 1 |
S | 681 | P681H | cCt | cAt | 208 | 208 | B.1.575.2 | 1 |
S | 681 | P681R | cCt | cGt | 207 | 207 | AY.76 | 1 |
S | 681 | P681H | cCt | cAt | 206 | 206 | B.1.596 | 0.017951 |
S | 681 | P681R | cCt | cGt | 204 | 204 | AY.89 | 1 |
S | 681 | P681H | cCt | cAt | 195 | 195 | AV.1 | 0.984848 |
S | 681 | P681R | cCt | cGt | 189 | 189 | B.1.1.7 | 0.000169 |
S | 681 | P681L | cCt | cTt | 187 | 187 | B.1.1.214 | 0.01037 |
S | 681 | P681H | cCt | cAt | 187 | 187 | B.1.177.73 | 0.105889 |
S | 681 | P681R | cCt | cGt | 184 | 184 | AY.115 | 0.958333 |
S | 681 | P681H | cCt | cAt | 176 | 176 | B.1.1.526 | 0.624113 |
S | 681 | P681H | cCt | cAt | 166 | 166 | B.1.427 | 0.008383 |
S | 681 | P681Y | CCt | TAt | 155 | 155 | All | 0.00003 |
S | 681 | P681H | cCt | cAt | 151 | 151 | Q.6 | 1 |
S | 681 | P681R | cCt | cGt | 148 | 150 | C.36 | 0.134791 |
S | 681 | P681R | cCT | cGG | 2 | 150 | C.36 | 0.001821 |
S | 681 | P681P | ccT | ccC | 74 | 146 | All | 0.000014 |
S | 681 | P681P | ccT | ccA | 49 | 146 | All | 0.000009 |
S | 681 | P681P | ccT | ccG | 23 | 146 | All | 0.000004 |
S | 681 | P681R | cCt | cGt | 136 | 136 | B.1.1.528 | 0.653846 |
S | 681 | P681H | cCt | cAt | 136 | 136 | B.1.609 | 0.065197 |
S | 681 | P681H | cCt | cAt | 133 | 133 | B.1.1.228 | 0.405488 |
S | 681 | P681S | Cct | Tct | 131 | 132 | All | 0.000025 |
S | 681 | P681S | CCt | AGt | 1 | 132 | All | 0 |
S | 681 | P681H | cCt | cAt | 132 | 132 | B.1.632 | 0.885906 |
S | 681 | P681H | cCt | cAt | 130 | 130 | B.1.415.1 | 0.984848 |
S | 681 | P681H | cCt | cAt | 128 | 128 | B.1.617.2 | 0.000482 |
S | 681 | P681H | cCt | cAt | 123 | 123 | AZ.2.1 | 1 |
S | 681 | P681R | cCt | cGt | 123 | 123 | B.1.1 | 0.002231 |
S | 681 | P681R | cCt | cGt | 120 | 120 | AY.17 | 0.983607 |
S | 681 | P681H | cCt | cAt | 119 | 119 | AZ.6 | 1 |
S | 681 | P681H | cCt | cAt | 115 | 115 | B.1.258 | 0.007653 |
S | 681 | P681Y | CCt | TAt | 109 | 109 | B.1.1.7 | 0.000098 |
S | 681 | P681H | cCt | cAt | 106 | 106 | B.1.375 | 0.086885 |
S | 681 | P681H | cCt | cAt | 102 | 102 | AY.103 | 0.000633 |
S | 681 | P681H | cCt | cAt | 102 | 102 | B.1.177 | 0.001343 |
S | 681 | P681R | cCt | cGt | 99 | 99 | AY.18 | 1 |
S | 681 | P681R | cCt | cGt | 99 | 99 | B.1.1.526 | 0.351064 |
S | 681 | P681H | cCt | cAt | 99 | 99 | B.1.530 | 0.707143 |
S | 681 | P681R | cCt | cGt | 98 | 98 | P.1.11 | 1 |
S | 681 | P681L | cCt | cTt | 92 | 92 | B.1.258 | 0.006122 |
S | 681 | P681L | cCt | cTt | 90 | 90 | B.1 | 0.000824 |
S | 681 | P681del | CCT | --- | 85 | 85 | All | 0.000016 |
S | 681 | P681H | cCt | cAt | 85 | 85 | C.16 | 0.090138 |
S | 681 | P681H | cCt | cAt | 79 | 79 | B.1.1.1 | 0.025809 |
S | 681 | P681H | cCt | cAt | 79 | 79 | Q.4 | 0.035925 |
S | 681 | P681H | cCt | cAt | 77 | 77 | B.1.320 | 0.09589 |
S | 681 | P681H | cCt | cAt | 70 | 70 | B.1.629 | 0.933333 |
S | 681 | P681H | cCt | cAt | 67 | 67 | B.1.1.263 | 0.104361 |
S | 681 | P681R | cCt | cGt | 67 | 67 | B.1.1.50 | 0.045485 |
S | 681 | P681H | cCt | cAt | 66 | 66 | AY.4 | 0.000103 |
S | 681 | P681R | cCt | cGt | 63 | 63 | B.1.596 | 0.00549 |
S | 681 | P681H | cCt | cAt | 62 | 62 | B.1.1.161 | 0.219081 |
S | 681 | P681H | cCt | cAt | 62 | 62 | B.1.429 | 0.001459 |
S | 681 | P681L | cCt | cTt | 61 | 61 | B.1.1 | 0.001107 |
S | 681 | P681H | cCt | cAt | 61 | 61 | B.1.258.24 | 0.655914 |
S | 681 | P681H | cCt | cAt | 60 | 60 | B.1.462 | 0.434783 |
S | 681 | P681L | cCt | cTt | 59 | 59 | AY.4 | 0.000092 |
S | 681 | P681H | cCt | cAt | 59 | 59 | B.1.1.336 | 0.983333 |
S | 681 | P681H | cCt | cAt | 58 | 58 | B.1.1.338 | 1 |
S | 681 | P681H | cCt | cAt | 58 | 58 | B.1.36 | 0.008462 |
S | 681 | P681H | cCt | cAt | 58 | 58 | Q.5 | 0.983051 |
S | 681 | P681R | cCt | cGt | 57 | 57 | B.1.1.334 | 0.934426 |
S | 681 | P681H | cCt | cAt | 57 | 57 | B.1.595 | 0.014875 |
S | 681 | P681H | cCt | cAt | 56 | 56 | AY.44 | 0.000341 |
S | 681 | P681H | cCt | cAt | 56 | 56 | B.1.526 | 0.001316 |
S | 681 | P681R | cCt | cGt | 55 | 55 | P.1 | 0.000866 |
S | 681 | P681R | cCt | cGt | 54 | 54 | AY.31 | 1 |
S | 681 | P681H | cCt | cAt | 54 | 54 | AY.43 | 0.000239 |
S | 681 | P681H | cCt | cAt | 54 | 54 | B | 0.006902 |
S | 681 | P681H | cCt | cAt | 54 | 54 | B.1.1.409 | 0.152975 |
S | 681 | P681R | cCt | cGt | 54 | 54 | B.1.604 | 0.931034 |
S | 681 | P681H | cCt | cAt | 53 | 53 | B.1.1.522 | 0.913793 |
S | 681 | P681H | cCt | cAt | 52 | 52 | B.1.351 | 0.001546 |
S | 681 | P681H | cCt | cAt | 49 | 49 | B.1.221 | 0.003481 |
S | 681 | P681P | ccT | ccA | 45 | 47 | B.1 | 0.000412 |
S | 681 | P681P | ccT | ccC | 2 | 47 | B.1 | 0.000018 |
S | 681 | P681L | cCt | cTt | 47 | 47 | B.1.2 | 0.000414 |
S | 681 | P681R | cCt | cGt | 47 | 47 | B.1.351 | 0.001397 |
S | 681 | P681H | cCt | cAt | 47 | 47 | B.1.36.8 | 0.047 |
S | 681 | P681H | cCt | cAt | 46 | 46 | B.1.1.466 | 0.4 |
S | 681 | P681H | cCt | cAt | 46 | 46 | B.1.470 | 0.064607 |
S | 681 | P681H | cCt | cAt | 45 | 45 | AY.25 | 0.000271 |
S | 681 | P681H | cCt | cAt | 45 | 45 | XA | 1 |
S | 681 | P681H | cCt | cAt | 44 | 44 | B.1.36.29 | 0.022763 |
S | 681 | P681H | cCt | cAt | 43 | 43 | B.1.1.465 | 0.671875 |
S | 681 | P681R | cCt | cGt | 42 | 42 | B.1.1.141 | 0.084507 |
S | 681 | P681R | cCt | cGt | 42 | 42 | B.1.462 | 0.304348 |
S | 681 | P681H | cCt | cAt | 41 | 41 | B.1.177.7 | 0.006759 |
S | 681 | P681H | cCt | cAt | 41 | 41 | B.1.189 | 0.175966 |
S | 681 | P681H | cCt | cAt | 41 | 41 | B.6 | 0.037307 |
S | 681 | P681R | cCt | cGt | 39 | 39 | B.1.36.22 | 0.047101 |
S | 681 | P681H | cCt | cAt | 38 | 38 | B.1.1.274 | 0.191919 |
S | 681 | P681R | cCt | cGt | 37 | 37 | B.1.36.8 | 0.037 |
S | 681 | P681L | cCt | cTt | 37 | 37 | B.1.617.2 | 0.000139 |
S | 681 | P681R | cCt | cGt | 35 | 35 | A | 0.013545 |
S | 681 | P681H | cCt | cAt | 35 | 35 | B.1.1.216 | 0.031167 |
S | 681 | P681R | cCt | cGt | 35 | 35 | Q.8 | 0.005772 |
S | 681 | P681H | cCt | cAt | 34 | 34 | B.1.399 | 0.065764 |
S | 681 | P681L | cCt | cTt | 33 | 33 | B.1.1.26 | 0.172775 |
S | 681 | P681H | cCt | cAt | 33 | 33 | B.1.468 | 0.188571 |
S | 681 | P681H | cCt | cAt | 33 | 33 | C.37 | 0.00383 |
S | 681 | P681L | cCt | cTt | 31 | 31 | AY.29 | 0.000489 |
S | 681 | P681R | cCt | cGt | 31 | 31 | B.1.576 | 0.028105 |
S | 681 | P681L | cCt | cTt | 30 | 30 | AY.43 | 0.000133 |
S | 681 | P681H | cCt | cAt | 29 | 29 | AY.29 | 0.000457 |
S | 681 | P681H | cCt | cAt | 29 | 29 | C.36 | 0.026412 |
S | 681 | P681H | cCt | cAt | 28 | 28 | B.1.1.63 | 0.010802 |
S | 681 | P681H | cCt | cAt | 28 | 28 | B.1.324 | 0.044944 |
S | 681 | P681Y | CCt | TAt | 28 | 28 | B.1.637 | 0.002046 |
S | 681 | P681H | cCt | cAt | 28 | 28 | P.1.12 | 0.013553 |
S | 681 | P681H | cCt | cAt | 26 | 26 | B.1.1.528 | 0.125 |
S | 681 | P681R | cCt | cGt | 26 | 26 | B.1.2 | 0.000229 |
S | 681 | P681L | cCt | cTt | 25 | 25 | P.1 | 0.000394 |
S | 681 | P681H | cCt | cAt | 24 | 24 | P.1.17 | 0.003882 |
S | 681 | P681C | CCt | TGt | 23 | 23 | All | 0.000004 |
S | 681 | P681L | cCt | cTt | 23 | 23 | AY.103 | 0.000143 |
S | 681 | P681L | cCt | cTt | 23 | 23 | B.1.494 | 0.793103 |
S | 681 | P681H | cCt | cAt | 22 | 22 | A | 0.008514 |
S | 681 | P681H | cCt | cAt | 22 | 22 | B.1.1.189 | 0.033283 |
S | 681 | P681H | cCt | cAt | 22 | 22 | B.1.1.220 | 0.040892 |
S | 681 | P681H | cCt | cAt | 22 | 22 | B.1.1.222 | 0.004488 |
S | 681 | P681R | cCt | cGt | 22 | 22 | B.1.177 | 0.00029 |
S | 681 | P681R | cCt | cGt | 22 | 22 | B.1.623 | 0.011803 |
S | 681 | P681H | cCt | cAt | 21 | 21 | B.1.1.312 | 0.040153 |
S | 681 | P681H | cCt | cAt | 21 | 21 | B.1.1.46 | 0.091703 |
S | 681 | P681H | cCt | cAt | 21 | 21 | B.1.1.507 | 0.182609 |
S | 681 | P681H | cCt | cAt | 20 | 20 | B.1.1.28 | 0.006225 |
S | 681 | P681R | cCt | cGt | 20 | 20 | C.37 | 0.002321 |
S | 681 | P681L | cCt | cTt | 18 | 18 | B.1.351 | 0.000535 |
S | 681 | P681H | cCt | cAt | 18 | 18 | B.1.416 | 0.022843 |
S | 681 | P681R | cCt | cGt | 18 | 18 | B.1.474 | 0.034221 |
S | 681 | P681H | cCt | cAt | 18 | 18 | P.1.16 | 0.006734 |
S | 681 | P681H | cCt | cAt | 17 | 17 | B.1.1.319 | 0.298246 |
S | 681 | P681R | cCt | cGt | 17 | 17 | B.1.633 | 0.708333 |
S | 681 | P681R | cCt | cGt | 16 | 16 | B.1.621 | 0.001416 |
S | 681 | P681P | ccT | ccG | 15 | 15 | B | 0.001917 |
S | 681 | P681H | cCt | cAt | 15 | 15 | B.1.1.163 | 0.114504 |
S | 681 | P681H | cCt | cAt | 15 | 15 | B.1.36.1 | 0.017104 |
S | 681 | P681H | cCt | cAt | 15 | 15 | C.1.2 | 0.06383 |
S | 681 | P681del1 | Cct | -ct | 12 | 14 | All | 0.000002 |
S | 681 | P681del1 | ccT | cc- | 2 | 14 | All | 0 |
S | 681 | P681H | cCt | cAt | 14 | 14 | B.1.160 | 0.000437 |
S | 681 | P681R | cCt | cGt | 14 | 14 | B.1.243 | 0.000974 |
S | 681 | P681L | cCt | cTt | 14 | 14 | B.1.526 | 0.000329 |
S | 681 | P681H | cCt | cAt | 14 | 14 | B.1.580 | 0.056911 |
S | 681 | P681S | Cct | Tct | 14 | 14 | C.37 | 0.001625 |
S | 681 | P681H | cCt | cAt | 14 | 14 | P.1.15 | 0.003253 |
S | 681 | P681H | cCt | cAt | 13 | 13 | AY.20 | 0.000505 |
S | 681 | P681H | cCt | cAt | 13 | 13 | AY.4.2.1 | 0.001937 |
S | 681 | P681H | cCt | cAt | 13 | 13 | B.1.1.205 | 0.048327 |
S | 681 | P681L | cCt | cTt | 13 | 13 | B.1.1.7 | 0.000012 |
S | 681 | P681H | cCt | cAt | 13 | 13 | B.1.157 | 0.038806 |
S | 681 | P681L | cCt | cTt | 13 | 13 | B.1.429 | 0.000306 |
S | 681 | P681H | cCt | cAt | 12 | 12 | A.19 | 0.113208 |
S | 681 | P681T | Cct | Act | 12 | 12 | All | 0.000002 |
S | 681 | P681H | cCt | cAt | 12 | 12 | AY.26 | 0.00034 |
S | 681 | P681L | cCt | cTt | 12 | 12 | AY.39.1 | 0.000475 |
S | 681 | P681H | cCt | cAt | 12 | 12 | AY.74 | 0.001388 |
S | 681 | P681S | Cct | Tct | 12 | 12 | B.1.1 | 0.000218 |
S | 681 | P681H | cCt | cAt | 12 | 12 | B.1.1.10 | 0.013378 |
S | 681 | P681H | cCt | cAt | 12 | 12 | B.1.258.17 | 0.001248 |
S | 681 | P681H | cCt | cAt | 12 | 12 | B.1.574 | 0.025806 |
S | 681 | P681H | cCt | cAt | 11 | 11 | 0.611111 | |
S | 681 | P681L | cCt | cTt | 11 | 11 | AY.25 | 0.000066 |
S | 681 | P681H | cCt | cAt | 11 | 11 | AY.42 | 0.000443 |
S | 681 | P681H | cCt | cAt | 11 | 11 | AY.99.2 | 0.001014 |
S | 681 | P681S | Cct | Tct | 11 | 11 | B.1 | 0.000101 |
S | 681 | P681H | cCt | cAt | 11 | 11 | B.1.1.269 | 0.014885 |
S | 681 | P681H | cCt | cAt | 11 | 11 | B.1.1.317 | 0.004529 |
S | 681 | P681L | cCt | cTt | 11 | 11 | B.1.221 | 0.000781 |
S | 681 | P681L | cCt | cTt | 11 | 11 | B.1.36 | 0.001605 |
S | 681 | P681H | cCt | cAt | 11 | 11 | B.1.367 | 0.008716 |
S | 681 | P681H | cCt | cAt | 11 | 11 | C.36.3 | 0.006239 |
S | 681 | P681H | cCt | cAt | 10 | 10 | AY.39 | 0.000247 |
S | 681 | P681del | CCT | --- | 10 | 10 | B.1 | 0.000092 |
S | 681 | P681P | ccT | ccC | 8 | 10 | P.1 | 0.000126 |
S | 681 | P681P | ccT | ccG | 2 | 10 | P.1 | 0.000032 |
S | 681 | P681L | cCt | cTt | 10 | 10 | P.1.14 | 0.000478 |
S | 681 | P681L | cCt | cTt | 10 | 10 | R.1 | 0.0009 |
S | 681 | P681H | cCt | cAt | 9 | 9 | AY.102 | 0.000239 |
S | 681 | P681H | cCt | cAt | 9 | 9 | AY.3 | 0.00009 |
S | 681 | P681H | cCt | cAt | 9 | 9 | AY.93 | 0.002458 |
S | 681 | P681R | cCt | cGt | 9 | 9 | B.1.1.216 | 0.008014 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.1.275 | 0.101124 |
S | 681 | P681L | cCt | cTt | 9 | 9 | B.1.1.277 | 0.006829 |
S | 681 | P681Y | CCt | TAt | 9 | 9 | B.1.1.519 | 0.000357 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.139 | 0.006598 |
S | 681 | P681L | cCt | cTt | 9 | 9 | B.1.177 | 0.000119 |
S | 681 | P681R | cCt | cGt | 9 | 9 | B.1.526 | 0.000212 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.533 | 0.086538 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.617.1 | 0.001161 |
S | 681 | P681R | cCt | cGt | 9 | 9 | B.1.632 | 0.060403 |
S | 681 | P681H | cCt | cAt | 9 | 9 | B.1.638 | 0.473684 |
S | 681 | P681H | cCt | cAt | 9 | 9 | C.35 | 0.006966 |
S | 681 | P681H | cCt | cAt | 8 | 8 | A.2.5 | 0.003992 |
S | 681 | P681L | cCt | cTt | 8 | 8 | AY.44 | 0.000049 |
S | 681 | P681R | cCt | cGt | 8 | 8 | B.1.1.1 | 0.002614 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.17 | 0.133333 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.224 | 0.114286 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.294 | 0.010127 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.1.70 | 0.002729 |
S | 681 | P681P | ccT | ccC | 8 | 8 | B.1.160 | 0.00025 |
S | 681 | P681S | Cct | Tct | 8 | 8 | B.1.2 | 0.00007 |
S | 681 | P681H | cCt | cAt | 8 | 8 | B.1.234 | 0.001056 |
S | 681 | P681L | cCt | cTt | 8 | 8 | B.1.427 | 0.000404 |
S | 681 | P681R | cCt | cGt | 8 | 8 | C.14 | 0.034632 |
S | 681 | P681H | cCt | cAt | 8 | 8 | R.1 | 0.00072 |
S | 681 | P681L | cCt | cTt | 7 | 7 | AY.102 | 0.000186 |
S | 681 | P681H | cCt | cAt | 7 | 7 | AY.106 | 0.002344 |
S | 681 | P681L | cCt | cTt | 7 | 7 | AY.117 | 0.000592 |
S | 681 | P681L | cCt | cTt | 7 | 7 | AY.120 | 0.00026 |
S | 681 | P681C | CCt | TGt | 7 | 7 | AY.4 | 0.000011 |
S | 681 | P681del | CCT | --- | 7 | 7 | B | 0.000895 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.225 | 0.05036 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.25 | 0.00398 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.277 | 0.005311 |
S | 681 | P681P | ccT | ccC | 7 | 7 | B.1.1.39 | 0.003568 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.1.447 | 0.25 |
S | 681 | P681del | CCT | --- | 7 | 7 | B.1.1.7 | 0.000006 |
S | 681 | P681P | ccT | ccC | 7 | 7 | B.1.128 | 0.004447 |
S | 681 | P681R | cCt | cGt | 7 | 7 | B.1.258 | 0.000466 |
S | 681 | P681S | Cct | Tct | 7 | 7 | B.1.351.2 | 0.002118 |
S | 681 | P681H | cCt | cAt | 7 | 7 | B.1.369 | 0.001997 |
S | 681 | P681del | CCT | --- | 7 | 7 | B.1.617.2 | 0.000026 |
S | 681 | P681R | cCt | cGt | 7 | 7 | P.1.7 | 0.002235 |
S | 681 | P681L | cCt | cTt | 7 | 7 | P.5 | 0.09589 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AT.1 | 0.030769 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.110 | 0.000676 |
S | 681 | P681L | cCt | cTt | 6 | 6 | AY.27 | 0.000388 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.4.2 | 0.00013 |
S | 681 | P681del | CCT | --- | 6 | 6 | AY.43 | 0.000027 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.47 | 0.000187 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.75.1 | 0.001082 |
S | 681 | P681H | cCt | cAt | 6 | 6 | AY.9.2 | 0.00022 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.1.171 | 0.022059 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.1.294 | 0.007595 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.1.34 | 0.078947 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.1.485 | 0.1 |
S | 681 | P681S | Cct | Tct | 6 | 6 | B.1.177 | 0.000079 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.214 | 0.021978 |
S | 681 | P681L | cCt | cTt | 6 | 6 | B.1.234 | 0.000792 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.241 | 0.00487 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.330 | 0.171429 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.36 | 0.000875 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.36.31 | 0.010508 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.469 | 0.021661 |
S | 681 | P681P | ccT | ccC | 6 | 6 | B.1.595 | 0.001566 |
S | 681 | P681H | cCt | cAt | 6 | 6 | B.1.619 | 0.005226 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.628 | 0.002114 |
S | 681 | P681H | cCt | cAt | 6 | 6 | P.5 | 0.082192 |
S | 681 | P681H | cCt | cAt | 5 | 5 | A.30 | 0.714286 |
S | 681 | P681Q | cCT | cAG | 3 | 5 | All | 0.000001 |
S | 681 | P681Q | cCT | cAA | 2 | 5 | All | 0 |
S | 681 | P681L | cCt | cTt | 5 | 5 | AY.26 | 0.000142 |
S | 681 | P681L | cCt | cTt | 5 | 5 | AY.4.2 | 0.000108 |
S | 681 | P681L | cCt | cTt | 5 | 5 | AY.5 | 0.000103 |
S | 681 | P681H | cCt | cAt | 5 | 5 | AY.95 | 0.003805 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.1.194 | 0.024752 |
S | 681 | P681L | cCt | cTt | 5 | 5 | B.1.1.284 | 0.000537 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.1.306 | 0.002192 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.1.317 | 0.002058 |
S | 681 | P681L | cCt | cTt | 5 | 5 | B.1.1.39 | 0.002548 |
S | 681 | P681S | Cct | Tct | 5 | 5 | B.1.1.428 | 0.04717 |
S | 681 | P681P | ccT | ccC | 3 | 5 | B.1.177 | 0.00004 |
S | 681 | P681P | ccT | ccG | 2 | 5 | B.1.177 | 0.000026 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.177.31 | 0.057471 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.177.86 | 0.000917 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.214 | 0.018315 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.311 | 0.001373 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.36.1 | 0.005701 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.369 | 0.001426 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.375 | 0.004098 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.380 | 0.033113 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.396 | 0.003529 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.411 | 0.018519 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.459 | 0.020408 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.497 | 0.001574 |
S | 681 | P681L | cCt | cTt | 5 | 5 | B.1.525 | 0.000566 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.599 | 0.018248 |
S | 681 | P681H | cCt | cAt | 5 | 5 | B.1.602 | 0.03268 |
S | 681 | P681L | cCt | cTt | 5 | 5 | P.1.17 | 0.000809 |
S | 681 | P681H | cCt | cAt | 4 | 4 | A.1 | 0.001127 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.101 | 0.001962 |
S | 681 | P681L | cCt | cTt | 4 | 4 | AY.107 | 0.001864 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.23 | 0.000279 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.45 | 0.000487 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.54 | 0.000381 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.61 | 0.000419 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.68 | 0.001095 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.75 | 0.000224 |
S | 681 | P681H | cCt | cAt | 4 | 4 | AY.96 | 0.008299 |
S | 681 | P681L | cCt | cTt | 4 | 4 | AY.98.1 | 0.000194 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.13 | 0.142857 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.142 | 0.070175 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.198 | 0.005874 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.236 | 0.027586 |
S | 681 | P681P | ccT | ccC | 4 | 4 | B.1.1.241 | 0.008282 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.288 | 0.007663 |
S | 681 | P681S | Cct | Tct | 4 | 4 | B.1.1.305 | 0.015444 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.311 | 0.001433 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.348 | 0.003185 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.372 | 0.002755 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.389 | 0.024242 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.39 | 0.002039 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.419 | 0.02963 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.44 | 0.009639 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.519 | 0.000159 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.523 | 0.00625 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.1.523 | 0.00625 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.53 | 0.054795 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.157 | 0.01194 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.160.10 | 0.032258 |
S | 681 | P681P | ccT | ccA | 4 | 4 | B.1.177.54 | 0.002426 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.192 | 0.037037 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.214.2 | 0.002398 |
S | 681 | P681S | Cct | Tct | 4 | 4 | B.1.240 | 0.000862 |
S | 681 | P681L | cCt | cTt | 4 | 4 | B.1.258.17 | 0.000416 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.366 | 0.019512 |
S | 681 | P681del | CCT | --- | 4 | 4 | B.1.462 | 0.028986 |
S | 681 | P681S | Cct | Tct | 4 | 4 | B.1.526 | 0.000094 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.551 | 0.005161 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.560 | 0.018519 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.629 | 0.053333 |
S | 681 | P681H | cCt | cAt | 4 | 4 | B.1.633 | 0.166667 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.637 | 0.000292 |
S | 681 | P681H | cCt | cAt | 4 | 4 | C.17 | 0.222222 |
S | 681 | P681H | cCt | cAt | 4 | 4 | C.36.3.1 | 0.01087 |
S | 681 | P681L | cCt | cTt | 4 | 4 | C.37 | 0.000464 |
S | 681 | P681H | cCt | cAt | 4 | 4 | P.1.14 | 0.000191 |
S | 681 | P681R | cCt | cGt | 3 | 3 | 0.166667 | |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.100 | 0.000138 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.113 | 0.000427 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.118 | 0.000188 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.120 | 0.000112 |
S | 681 | P681L | cCt | cTt | 3 | 3 | AY.121 | 0.000406 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.24 | 0.001293 |
S | 681 | P681L | cCt | cTt | 3 | 3 | AY.24 | 0.001293 |
S | 681 | P681del | CCT | --- | 3 | 3 | AY.25 | 0.000018 |
S | 681 | P681L | cCt | cTt | 3 | 3 | AY.3 | 0.00003 |
S | 681 | P681L | cCt | cTt | 3 | 3 | AY.39 | 0.000074 |
S | 681 | P681C | CCt | TGt | 3 | 3 | AY.4.2 | 0.000065 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.5 | 0.000062 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.53 | 0.000863 |
S | 681 | P681L | cCt | cTt | 3 | 3 | AY.6 | 0.000123 |
S | 681 | P681L | cCt | cTt | 3 | 3 | AY.68 | 0.000821 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.70 | 0.000626 |
S | 681 | P681H | cCt | cAt | 3 | 3 | AY.92 | 0.000862 |
S | 681 | P681T | Cct | Act | 3 | 3 | B.1 | 0.000027 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.133 | 0.025424 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.174 | 0.010135 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.265 | 0.009464 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.27 | 0.016949 |
S | 681 | P681S | Cct | Tct | 3 | 3 | B.1.1.28 | 0.000934 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.299 | 0.036585 |
S | 681 | P681L | cCt | cTt | 3 | 3 | B.1.1.308 | 0.035294 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.344 | 0.032258 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.1.355 | 0.046154 |
S | 681 | P681L | cCt | cTt | 3 | 3 | B.1.1.37 | 0.000579 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.398 | 0.009677 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.1.420 | 0.003018 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.54 | 0.009063 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.1.99 | 0.071429 |
S | 681 | P681S | Cct | Tct | 3 | 3 | B.1.126 | 0.003827 |
S | 681 | P681L | cCt | cTt | 3 | 3 | B.1.160 | 0.000094 |
S | 681 | P681S | Cct | Tct | 3 | 3 | B.1.177.54 | 0.001819 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.177.81 | 0.000568 |
S | 681 | P681T | Cct | Act | 3 | 3 | B.1.2 | 0.000026 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.237 | 0.014925 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.247 | 0.044776 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.260 | 0.010033 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.335 | 0.030928 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.351.3 | 0.002629 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.36.10 | 0.014354 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.36.29 | 0.001552 |
S | 681 | P681P | ccT | ccC | 3 | 3 | B.1.427 | 0.000151 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.466.2 | 0.001174 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.509 | 0.002597 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.525 | 0.000339 |
S | 681 | P681P | ccT | ccC | 3 | 3 | B.1.526 | 0.000071 |
S | 681 | P681L | cCt | cTt | 3 | 3 | B.1.527 | 0.011111 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.577 | 0.002062 |
S | 681 | P681L | cCt | cTt | 3 | 3 | B.1.577 | 0.002062 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.600 | 0.017544 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.618 | 0.012097 |
S | 681 | P681H | cCt | cAt | 3 | 3 | B.1.636 | 0.020134 |
S | 681 | P681L | cCt | cTt | 3 | 3 | C.35 | 0.002322 |
S | 681 | P681P | ccT | ccG | 3 | 3 | C.37 | 0.000348 |
S | 681 | P681L | cCt | cTt | 3 | 3 | D.2 | 0.000225 |
S | 681 | P681H | cCt | cAt | 3 | 3 | N.5 | 0.0053 |
S | 681 | P681L | cCt | cTt | 3 | 3 | N.5 | 0.0053 |
S | 681 | P681del | CCT | --- | 3 | 3 | P.1 | 0.000047 |
S | 681 | P681L | cCt | cTt | 3 | 3 | P.1.12 | 0.001452 |
S | 681 | P681H | cCt | cAt | 3 | 3 | P.1.13 | 0.002695 |
S | 681 | P681del | CCT | --- | 3 | 3 | P.1.15 | 0.000697 |
S | 681 | P681S | Cct | Tct | 3 | 3 | R.1 | 0.00027 |
S | 681 | P681Q | cCT | cAG | 2 | 2 | 0.111111 | |
S | 681 | P681del | CCT | --- | 2 | 2 | 0.111111 | |
S | 681 | P681del | CCT | --- | 2 | 2 | A | 0.000774 |
S | 681 | P681R | cCt | cGt | 2 | 2 | A.1 | 0.000564 |
S | 681 | P681H | cCt | cAt | 2 | 2 | A.2 | 0.001324 |
S | 681 | P681H | cCt | cAt | 2 | 2 | A.2.5.1 | 0.009615 |
S | 681 | P681G | CCt | GGt | 2 | 2 | All | 0 |
S | 681 | P681F | CCt | TTt | 2 | 2 | All | 0 |
S | 681 | P681A | Cct | Gct | 2 | 2 | All | 0 |
S | 681 | P681C | CCt | TGt | 2 | 2 | AY.100 | 0.000092 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.117 | 0.000169 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.119 | 0.000071 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.12 | 0.000632 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.20 | 0.000078 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.23 | 0.000139 |
S | 681 | P681C | CCt | TGt | 2 | 2 | AY.25 | 0.000012 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.3.1 | 0.000171 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.36 | 0.000296 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.36 | 0.000296 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.39.1 | 0.000079 |
S | 681 | P681del | CCT | --- | 2 | 2 | AY.4 | 0.000003 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.41 | 0.000588 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.42 | 0.00008 |
S | 681 | P681C | CCt | TGt | 2 | 2 | AY.43 | 0.000009 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.46 | 0.000208 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.46.3 | 0.001867 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.46.5 | 0.000397 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.46.6 | 0.000144 |
S | 681 | P681G | CCt | GGt | 2 | 2 | AY.47 | 0.000062 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.47 | 0.000062 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.61 | 0.00021 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.71 | 0.00095 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.9.2 | 0.000073 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.97 | 0.003401 |
S | 681 | P681L | cCt | cTt | 2 | 2 | AY.98 | 0.000158 |
S | 681 | P681H | cCt | cAt | 2 | 2 | AY.98.1 | 0.000097 |
S | 681 | P681Y | CCt | TAt | 2 | 2 | B.1 | 0.000018 |
S | 681 | P681del1 | Cct | -ct | 1 | 2 | B.1 | 0.000009 |
S | 681 | P681del1 | ccT | cc- | 1 | 2 | B.1 | 0.000009 |
S | 681 | P681del | CCT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.1.1 | 0.000653 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.117 | 0.019417 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.121 | 0.004854 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.135 | 0.00939 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.137 | 0.025 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.141 | 0.004024 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.148 | 0.017544 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.160 | 0.047619 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.192 | 0.004619 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.203 | 0.033898 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.237 | 0.010811 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.254 | 0.022472 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.1.28 | 0.000622 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.291 | 0.001485 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.298 | 0.001724 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.1.306 | 0.000877 |
S | 681 | P681del1 | Cct | -ct | 2 | 2 | B.1.1.306 | 0.000877 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.327 | 0.2 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.329 | 0.007692 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.33 | 0.000842 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.1.335 | 0.025974 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.354 | 0.008772 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.37 | 0.000386 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.370 | 0.025316 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.374 | 0.004751 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.385 | 0.008929 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.1.4 | 0.005952 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.1.409 | 0.005666 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.416 | 0.00181 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.430 | 0.083333 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.448 | 0.004065 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.462 | 0.017241 |
S | 681 | P681P | ccT | ccC | 2 | 2 | B.1.1.464 | 0.002946 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.1.512 | 0.057143 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.1.523 | 0.003125 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.524 | 0.041667 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.525 | 0.010929 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.53 | 0.027397 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.1.58 | 0.010753 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.1.63 | 0.000772 |
S | 681 | P681Q | cCT | cAG | 1 | 2 | B.1.1.7 | 0.000001 |
S | 681 | P681Q | cCT | cAA | 1 | 2 | B.1.1.7 | 0.000001 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.8 | 0.007168 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.83 | 0.00542 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.1.89 | 0.012121 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.111 | 0.00235 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.160 | 0.000062 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.160 | 0.000062 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.177.12 | 0.000303 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.177.41 | 0.005 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.177.44 | 0.001038 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.177.44 | 0.001038 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.177.56 | 0.001335 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.177.58 | 0.002663 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.199 | 0.008264 |
S | 681 | P681P | ccT | ccC | 2 | 2 | B.1.2 | 0.000018 |
S | 681 | P681del1 | Cct | -ct | 2 | 2 | B.1.2 | 0.000018 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.206 | 0.001631 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.221 | 0.000142 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.243 | 0.000139 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.247 | 0.029851 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.258.17 | 0.000208 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.258.3 | 0.00335 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.279 | 0.001027 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.301 | 0.011834 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.323 | 0.041667 |
S | 681 | P681del | CCT | --- | 2 | 2 | B.1.351 | 0.000059 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.351.2 | 0.000605 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.351.3 | 0.001753 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.367 | 0.001585 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.380 | 0.013245 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.385 | 0.021277 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.415.1 | 0.015152 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.427 | 0.000101 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.441 | 0.019231 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.462 | 0.014493 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.471 | 0.005464 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.517 | 0.000854 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.525 | 0.000226 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.530 | 0.014286 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.564 | 0.000852 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.564 | 0.000852 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.564 | 0.000852 |
S | 681 | P681Y | CCt | TAt | 2 | 2 | B.1.575 | 0.000607 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.580 | 0.00813 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.582 | 0.000981 |
S | 681 | P681L | cCt | cTt | 2 | 2 | B.1.595 | 0.000522 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.1.596 | 0.000174 |
S | 681 | P681del | CCT | --- | 2 | 2 | B.1.596 | 0.000174 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.609 | 0.000959 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.619 | 0.001742 |
S | 681 | P681del | CCT | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.625 | 0.004706 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.634 | 0.006849 |
S | 681 | P681H | cCt | cAt | 2 | 2 | B.1.78 | 0.017094 |
S | 681 | P681S | Cct | Tct | 2 | 2 | B.40 | 0.000729 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.6 | 0.00182 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.18 | 0.005181 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.33 | 0.117647 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.36.3.1 | 0.005435 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.37.1 | 0.005236 |
S | 681 | P681H | cCt | cAt | 2 | 2 | C.38 | 0.016129 |
S | 681 | P681S | Cct | Tct | 2 | 2 | C.8 | 0.008929 |
S | 681 | P681L | cCt | cTt | 2 | 2 | L.1 | 0.00381 |
S | 681 | P681R | cCt | cGt | 2 | 2 | L.3 | 0.007092 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.1 | 0.000635 |
S | 681 | P681H | cCt | cAt | 2 | 2 | P.1.10.1 | 0.01626 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.13 | 0.001797 |
S | 681 | P681L | cCt | cTt | 2 | 2 | P.1.15 | 0.000465 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.16 | 0.000748 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.17 | 0.000324 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.17.1 | 0.00175 |
S | 681 | P681H | cCt | cAt | 2 | 2 | P.2 | 0.000373 |
S | 681 | P681Y | CCt | TAt | 2 | 2 | Q.1 | 0.000253 |
S | 681 | P681Y | CCt | TAt | 2 | 2 | Q.8 | 0.00033 |
S | 681 | P681del | CCT | --- | 1 | 1 | A.1 | 0.000282 |
S | 681 | P681T | Cct | Act | 1 | 1 | A.2 | 0.000662 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.2.5.2 | 0.001572 |
S | 681 | P681P | ccT | ccC | 1 | 1 | A.2.5.2 | 0.001572 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.21 | 0.00277 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.23.1 | 0.000704 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.25 | 0.018182 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.27 | 0.001656 |
S | 681 | P681H | cCt | cAt | 1 | 1 | A.7 | 0.055556 |
S | 681 | P681S | Cct | Tct | 1 | 1 | AD.2 | 0.000219 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AE.8 | 0.000489 |
S | 681 | P681del2 | cCT | c-- | 1 | 1 | All | 0 |
S | 681 | P681X | CCT | TAG | 1 | 1 | All | 0 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AU.2 | 0.002421 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AU.3 | 0.00211 |
S | 681 | P681C | CCt | TGt | 1 | 1 | AY.10 | 0.00053 |
S | 681 | P681del | CCT | --- | 1 | 1 | AY.103 | 0.000006 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.108 | 0.001103 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.111 | 0.000183 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.119 | 0.000035 |
S | 681 | P681del1 | ccT | cc- | 1 | 1 | AY.120 | 0.000037 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.120.1 | 0.000321 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.120.1 | 0.000321 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.121 | 0.000135 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.13 | 0.000161 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.13 | 0.000161 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.14 | 0.000088 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.15 | 0.002222 |
S | 681 | P681del1 | Cct | -ct | 1 | 1 | AY.16 | 0.00038 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.19 | 0.00114 |
S | 681 | P681C | CCt | TGt | 1 | 1 | AY.23 | 0.00007 |
S | 681 | P681C | CCt | TGt | 1 | 1 | AY.26 | 0.000028 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.27 | 0.000065 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.29.1 | 0.000221 |
S | 681 | P681del | CCT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.30 | 0.000396 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.38 | 0.000499 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.4.3 | 0.000842 |
S | 681 | P681C | CCt | TGt | 1 | 1 | AY.42 | 0.00004 |
S | 681 | P681F | CCt | TTt | 1 | 1 | AY.43 | 0.000004 |
S | 681 | P681C | CCt | TGt | 1 | 1 | AY.44 | 0.000006 |
S | 681 | P681del1 | Cct | -ct | 1 | 1 | AY.44 | 0.000006 |
S | 681 | P681S | CCt | AGt | 1 | 1 | AY.44 | 0.000006 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.46 | 0.000104 |
S | 681 | P681del | CCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.46.2 | 0.000635 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.46.5 | 0.000198 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.5.4 | 0.000277 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.52 | 0.000814 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.62 | 0.000436 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.65 | 0.000533 |
S | 681 | P681Q | cCT | cAA | 1 | 1 | AY.67 | 0.000464 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.67 | 0.000464 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.7 | 0.000196 |
S | 681 | P681C | CCt | TGt | 1 | 1 | AY.71 | 0.000475 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.73 | 0.000665 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.75 | 0.000056 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.79 | 0.001211 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.83 | 0.001724 |
S | 681 | P681del | CCT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.85 | 0.000427 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.87 | 0.000833 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.88 | 0.000884 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.9 | 0.000068 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.9 | 0.000068 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
S | 681 | P681del1 | Cct | -ct | 1 | 1 | AY.9.2 | 0.000037 |
S | 681 | P681del | CCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 681 | P681L | cCt | cTt | 1 | 1 | AY.92 | 0.000287 |
S | 681 | P681C | CCt | TGt | 1 | 1 | AY.98 | 0.000079 |
S | 681 | P681del | CCT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.99 | 0.001049 |
S | 681 | P681H | cCt | cAt | 1 | 1 | AY.99.1 | 0.001553 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B | 0.000128 |
S | 681 | P681A | Cct | Gct | 1 | 1 | B.1 | 0.000009 |
S | 681 | P681X | CCT | TAG | 1 | 1 | B.1.1 | 0.000018 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.1 | 0.000018 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.117 | 0.009709 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.121 | 0.002427 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.122 | 0.045455 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.128 | 0.007092 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.129 | 0.009174 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.145 | 0.037037 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.15 | 0.013514 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.158 | 0.012195 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.170 | 0.001247 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.175 | 0.076923 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.187 | 0.00885 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.1.198 | 0.001468 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.1.205 | 0.003717 |
S | 681 | P681Y | CCt | TAt | 1 | 1 | B.1.1.207 | 0.001182 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.1.214 | 0.000055 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.1.214 | 0.000055 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.221 | 0.010101 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.1.222 | 0.000204 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.231 | 0.003096 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.231 | 0.003096 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.1.232 | 0.001815 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.261 | 0.008621 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.269 | 0.001353 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.269 | 0.001353 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.275 | 0.011236 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.279 | 0.001121 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.280 | 0.003086 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.1.280 | 0.003086 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.298 | 0.000862 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.301 | 0.001179 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.301 | 0.001179 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.304 | 0.002809 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.311 | 0.000358 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.311 | 0.000358 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.312 | 0.001912 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.326 | 0.001761 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.328 | 0.016949 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.34 | 0.013158 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.343 | 0.020833 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.1.349 | 0.010309 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.1.372 | 0.000689 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.387 | 0.058824 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.388 | 0.045455 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.397 | 0.002252 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.397 | 0.002252 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.399 | 0.090909 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.404 | 0.015873 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.407 | 0.041667 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.410 | 0.037037 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.412 | 0.007634 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.1.420 | 0.001006 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.422 | 0.045455 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.45 | 0.014085 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.464 | 0.001473 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.464 | 0.001473 |
S | 681 | P681P | ccT | ccG | 1 | 1 | B.1.1.486 | 0.001577 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.51 | 0.001718 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.515 | 0.02 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.1.523 | 0.001563 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.1.526 | 0.003546 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.55 | 0.012987 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.1.56 | 0.017857 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.126 | 0.001276 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.131 | 0.008772 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.160.14 | 0.002119 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.160.16 | 0.000929 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.160.17 | 0.001701 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.160.20 | 0.008929 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.160.33 | 0.004425 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.167 | 0.007812 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.169 | 0.014925 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.170 | 0.00431 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 681 | P681del2 | cCT | c-- | 1 | 1 | B.1.177 | 0.000013 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.21 | 0.000076 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.35 | 0.000691 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.177.35 | 0.000691 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.47 | 0.012987 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.177.5 | 0.001242 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.54 | 0.000606 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.177.56 | 0.000668 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.177.6 | 0.000977 |
S | 681 | P681T | Cct | Act | 1 | 1 | B.1.177.7 | 0.000165 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.8 | 0.000752 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.82 | 0.000477 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.177.9 | 0.001332 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.179 | 0.003759 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.189 | 0.004292 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.192 | 0.009259 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.206 | 0.000816 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.206 | 0.000816 |
S | 681 | P681del1 | Cct | -ct | 1 | 1 | B.1.214 | 0.003663 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.214.2 | 0.0006 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.214.3 | 0.007143 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.221 | 0.000071 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.221 | 0.000071 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.222 | 0.001692 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.229 | 0.009709 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.239 | 0.001221 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.243 | 0.00007 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.243 | 0.00007 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.243.1 | 0.022222 |
S | 681 | P681del1 | Cct | -ct | 1 | 1 | B.1.247 | 0.014925 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.248 | 0.029412 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.258 | 0.000067 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.258.11 | 0.000396 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.258.12 | 0.007874 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.265 | 0.001271 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.279 | 0.000514 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.301 | 0.005917 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.311 | 0.000275 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.311 | 0.000275 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.329 | 0.000608 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.330 | 0.028571 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.349 | 0.000715 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.351 | 0.00003 |
S | 681 | P681T | Cct | Act | 1 | 1 | B.1.351 | 0.00003 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.351.2 | 0.000303 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.351.5 | 0.0006 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.355 | 0.011111 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.36 | 0.000146 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.36.17 | 0.000494 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.36.22 | 0.001208 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.36.27 | 0.000763 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.36.29 | 0.000517 |
S | 681 | P681del1 | Cct | -ct | 1 | 1 | B.1.36.29 | 0.000517 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.361 | 0.001289 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.366 | 0.004878 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.366 | 0.004878 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.369 | 0.000285 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.375 | 0.00082 |
S | 681 | P681R | cCT | cGC | 1 | 1 | B.1.377 | 0.004566 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.389 | 0.001002 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.393 | 0.028571 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.393 | 0.028571 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.395 | 0.007042 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.396 | 0.000706 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.397 | 0.004854 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.400 | 0.000429 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.411 | 0.003704 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.417 | 0.028571 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.427 | 0.00005 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.429 | 0.000024 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.432 | 0.011236 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.432 | 0.011236 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.433 | 0.003195 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.433 | 0.003195 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.453 | 0.003236 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.460 | 0.017857 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.485 | 0.014925 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.506 | 0.02381 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.517 | 0.000427 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.521 | 0.004975 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.521 | 0.004975 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.525 | 0.000113 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.527 | 0.003704 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.527 | 0.003704 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.533 | 0.009615 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.538 | 0.008065 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.545 | 0.014493 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.558 | 0.004566 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.560 | 0.00463 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.565 | 0.00081 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.567 | 0.003333 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.568 | 0.001111 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.569 | 0.014493 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.574 | 0.002151 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.577 | 0.000687 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.580 | 0.004065 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.581 | 0.009434 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.582 | 0.000491 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.589 | 0.007576 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.590 | 0.004545 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.596 | 0.000087 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.599 | 0.00365 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.600 | 0.005848 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.1.605 | 0.005952 |
S | 681 | P681T | Cct | Act | 1 | 1 | B.1.606 | 0.006024 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.612 | 0.002653 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
S | 681 | P681del1 | Cct | -ct | 1 | 1 | B.1.617.1 | 0.000129 |
S | 681 | P681F | CCt | TTt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.619.1 | 0.000641 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.1.627 | 0.00202 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.630 | 0.005236 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.631 | 0.003367 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.1.637 | 0.000073 |
S | 681 | P681del | CCT | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.88.1 | 0.004808 |
S | 681 | P681A | Cct | Gct | 1 | 1 | B.1.88.1 | 0.004808 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.1.94 | 0.027027 |
S | 681 | P681P | ccT | ccC | 1 | 1 | B.23 | 0.002924 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.3 | 0.000831 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.35 | 0.007812 |
S | 681 | P681S | Cct | Tct | 1 | 1 | B.4 | 0.002208 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.40 | 0.000364 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.55 | 0.00295 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.55 | 0.00295 |
S | 681 | P681H | cCt | cAt | 1 | 1 | B.55 | 0.00295 |
S | 681 | P681L | cCt | cTt | 1 | 1 | B.6 | 0.00091 |
S | 681 | P681R | cCt | cGt | 1 | 1 | C.17 | 0.055556 |
S | 681 | P681H | cCt | cAt | 1 | 1 | C.26 | 0.007353 |
S | 681 | P681L | cCt | cTt | 1 | 1 | C.36 | 0.000911 |
S | 681 | P681R | cCt | cGt | 1 | 1 | C.36.3 | 0.000567 |
S | 681 | P681del | CCT | --- | 1 | 1 | C.37 | 0.000116 |
S | 681 | P681H | cCt | cAt | 1 | 1 | C.4 | 0.01 |
S | 681 | P681T | Cct | Act | 1 | 1 | D.2 | 0.000075 |
S | 681 | P681S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
S | 681 | P681H | cCt | cAt | 1 | 1 | N.3 | 0.005814 |
S | 681 | P681H | cCt | cAt | 1 | 1 | P.1.10 | 0.000269 |
S | 681 | P681del | CCT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 681 | P681R | cCt | cGt | 1 | 1 | P.1.15 | 0.000232 |
S | 681 | P681L | cCt | cTt | 1 | 1 | P.1.16 | 0.000374 |
S | 681 | P681T | Cct | Act | 1 | 1 | P.1.4 | 0.000977 |
S | 681 | P681R | cCt | cGt | 1 | 1 | P.2 | 0.000187 |
S | 681 | P681S | Cct | Tct | 1 | 1 | P.2 | 0.000187 |
S | 681 | P681L | cCt | cTt | 1 | 1 | P.2 | 0.000187 |
S | 681 | P681R | cCt | cGt | 1 | 1 | P.5 | 0.013699 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|