CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 681

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	681	P681R		nonsyn	cCt	cGt	2762920	2762560	0.99987	23603-23605
S	681	P681R		nonsyn	cCT	cGC	2762920	304	0.000110029	23603-23605
S	681	P681R		nonsyn	cCT	cGG	2762920	31	0.00001122	23603-23605
S	681	P681R		nonsyn	cCT	cGA	2762920	25	0.0000090484	23603-23605
S	681	P681H		nonsyn	cCt	cAt	1223571	1223473	0.99992	23603-23605
S	681	P681H		nonsyn	cCT	cAC	1223571	98	0.0000800934	23603-23605
S	681	P681L		nonsyn	cCt	cTt	1489	1489	1	23603-23605
S	681	P681Y		nonsyn	CCt	TAt	155	155	1	23603-23605
S	681	P681P		syn	ccT	ccC	146	74	0.506849	23603-23605
S	681	P681P		syn	ccT	ccA	146	49	0.335616	23603-23605
S	681	P681P		syn	ccT	ccG	146	23	0.157534	23603-23605
S	681	P681S		nonsyn	Cct	Tct	132	131	0.992424	23603-23605
S	681	P681S		nonsyn	CCt	AGt	132	1	0.00757576	23603-23605
S	681	P681del		del	CCT	---	85	85	1	23603-23605
S	681	P681C		nonsyn	CCt	TGt	23	23	1	23603-23605
S	681	P681del1		del	Cct	-ct	14	12	0.857143	23603-23605
S	681	P681del1		del	ccT	cc-	14	2	0.142857	23603-23605
S	681	P681T		nonsyn	Cct	Act	12	12	1	23603-23605
S	681	P681Q		nonsyn	cCT	cAG	5	3	0.6	23603-23605
S	681	P681Q		nonsyn	cCT	cAA	5	2	0.4	23603-23605
S	681	P681A		nonsyn	Cct	Gct	2	2	1	23603-23605
S	681	P681G		nonsyn	CCt	GGt	2	2	1	23603-23605
S	681	P681F		nonsyn	CCt	TTt	2	2	1	23603-23605
S	681	P681del2		del	cCT	c--	1	1	1	23603-23605
S	681	P681X		nonsyn	CCT	TAG	1	1	1	23603-23605

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	681	P681R	cCt	cGt	2762560	2762920	All	0.528372
S	681	P681R	cCT	cGC	304	2762920	All	0.000058
S	681	P681R	cCT	cGG	31	2762920	All	0.000006
S	681	P681R	cCT	cGA	25	2762920	All	0.000005
S	681	P681H	cCt	cAt	1223473	1223571	All	0.234004
S	681	P681H	cCT	cAC	98	1223571	All	0.000019
S	681	P681H	cCt	cAt	1112441	1112533	B.1.1.7	0.995883
S	681	P681H	cCT	cAC	92	1112533	B.1.1.7	0.000082
S	681	P681R	cCt	cGt	641813	641875	AY.4	0.998932
S	681	P681R	cCT	cGC	62	641875	AY.4	0.000096
S	681	P681R	cCt	cGt	264157	264167	B.1.617.2	0.994661
S	681	P681R	cCT	cGC	10	264167	B.1.617.2	0.000038
S	681	P681R	cCt	cGt	224371	224371	AY.43	0.994068
S	681	P681R	cCt	cGt	165836	165844	AY.25	0.997474
S	681	P681R	cCT	cGC	7	165844	AY.25	0.000042
S	681	P681R	cCT	cGA	1	165844	AY.25	0.000006
S	681	P681R	cCt	cGt	163492	163539	AY.44	0.995137
S	681	P681R	cCT	cGC	44	163539	AY.44	0.000268
S	681	P681R	cCT	cGG	2	163539	AY.44	0.000012
S	681	P681R	cCT	cGA	1	163539	AY.44	0.000006
S	681	P681R	cCt	cGt	160438	160443	AY.103	0.996169
S	681	P681R	cCT	cGC	5	160443	AY.103	0.000031
S	681	P681R	cCt	cGt	100253	100318	AY.3	0.997155
S	681	P681R	cCT	cGG	24	100318	AY.3	0.000239
S	681	P681R	cCT	cGC	22	100318	AY.3	0.000219
S	681	P681R	cCT	cGA	19	100318	AY.3	0.000189
S	681	P681R	cCt	cGt	63336	63336	AY.29	0.999038
S	681	P681R	cCt	cGt	48346	48348	AY.5	0.998307
S	681	P681R	cCT	cGC	2	48348	AY.5	0.000041
S	681	P681R	cCt	cGt	46079	46079	AY.4.2	0.999393
S	681	P681R	cCt	cGt	40198	40198	AY.39	0.993353
S	681	P681R	cCt	cGt	37622	37626	AY.102	0.997508
S	681	P681R	cCT	cGC	4	37626	AY.102	0.000106
S	681	P681R	cCt	cGt	35205	35212	AY.26	0.996659
S	681	P681R	cCT	cGC	7	35212	AY.26	0.000198
S	681	P681R	cCt	cGt	31932	32054	AY.47	0.99325
S	681	P681R	cCT	cGC	122	32054	AY.47	0.003795
S	681	P681R	cCt	cGt	28229	28229	AY.119	0.996716
S	681	P681R	cCt	cGt	27103	27105	AY.9.2	0.995482
S	681	P681R	cCT	cGC	1	27105	AY.9.2	0.000037
S	681	P681R	cCT	cGG	1	27105	AY.9.2	0.000037
S	681	P681R	cCt	cGt	26857	26857	AY.120	0.998513
S	681	P681R	cCt	cGt	25660	25661	AY.20	0.997279
S	681	P681R	cCT	cGC	1	25661	AY.20	0.000039
S	681	P681R	cCt	cGt	25144	25144	AY.39.1	0.996039
S	681	P681H	cCt	cAt	25132	25132	B.1.1.519	0.998014
S	681	P681R	cCt	cGt	24764	24764	AY.42	0.996259
S	681	P681R	cCt	cGt	24289	24289	AY.6	0.998972
S	681	P681R	cCt	cGt	21661	21661	AY.100	0.99655
S	681	P681R	cCt	cGt	20582	20583	AY.98.1	0.996804
S	681	P681R	cCT	cGC	1	20583	AY.98.1	0.000048
S	681	P681R	cCt	cGt	17789	17790	AY.75	0.996583
S	681	P681R	cCT	cGC	1	17790	AY.75	0.000056
S	681	P681R	cCt	cGt	15915	15915	AY.118	0.997056
S	681	P681R	cCt	cGt	15441	15441	AY.27	0.999353
S	681	P681R	cCt	cGt	14855	14855	AY.33	0.991987
S	681	P681R	cCt	cGt	14783	14783	AY.9	0.999256
S	681	P681R	cCt	cGt	14277	14277	AY.23	0.995815
S	681	P681R	cCt	cGt	13773	13773	AY.46.6	0.994512
S	681	P681R	cCt	cGt	12586	12587	AY.98	0.994233
S	681	P681R	cCT	cGC	1	12587	AY.98	0.000079
S	681	P681R	cCt	cGt	11896	11896	AY.9.1	0.995981
S	681	P681R	cCt	cGt	11791	11792	AY.117	0.996535
S	681	P681R	cCT	cGG	1	11792	AY.117	0.000085
S	681	P681R	cCt	cGt	11703	11703	AY.3.1	0.997783
S	681	P681R	cCt	cGt	11345	11345	AY.14	0.998504
S	681	P681H	cCt	cAt	11240	11240	B.1.621	0.994954
S	681	P681R	cCt	cGt	10732	10732	AY.99.2	0.989033
S	681	P681R	cCt	cGt	10457	10457	AY.54	0.997044
S	681	P681R	cCt	cGt	10283	10283	AY.34	0.997091
S	681	P681R	cCt	cGt	9440	9440	AY.61	0.989103
S	681	P681R	cCt	cGt	9355	9356	AY.46	0.973668
S	681	P681R	cCT	cGC	1	9356	AY.46	0.000104
S	681	P681R	cCt	cGt	8953	8953	AY.4.5	0.962378
S	681	P681R	cCt	cGt	8856	8856	AY.7.1	0.998084
S	681	P681R	cCt	cGt	8846	8846	AY.110	0.996845
S	681	P681R	cCt	cGt	8632	8632	AY.74	0.998265
S	681	P681R	cCt	cGt	8060	8060	AY.45	0.980774
S	681	P681H	cCt	cAt	7824	7824	Q.1	0.988378
S	681	P681R	cCt	cGt	7663	7664	B.1.617.1	0.988264
S	681	P681R	cCT	cGA	1	7664	B.1.617.1	0.000129
S	681	P681H	cCt	cAt	7600	7603	B.1.243	0.528843
S	681	P681H	cCT	cAC	3	7603	B.1.243	0.000209
S	681	P681R	cCt	cGt	7352	7358	AY.121	0.994858
S	681	P681R	cCT	cGC	6	7358	AY.121	0.000812
S	681	P681R	cCt	cGt	6985	6985	AY.113	0.994589
S	681	P681H	cCt	cAt	6887	6887	Q.3	0.99884
S	681	P681R	cCt	cGt	6695	6695	AY.4.2.1	0.997467
S	681	P681R	cCt	cGt	6661	6661	AY.36	0.987254
S	681	P681R	cCt	cGt	6207	6207	AY.13	0.999195
S	681	P681R	cCt	cGt	6074	6074	AY.46.4	0.999177
S	681	P681H	cCt	cAt	5875	5875	Q.8	0.968832
S	681	P681R	cCt	cGt	5483	5483	AY.75.1	0.98864
S	681	P681R	cCt	cGt	5447	5447	AY.111	0.997619
S	681	P681R	cCt	cGt	5345	5345	AY.69	0.99776
S	681	P681R	cCt	cGt	5100	5100	AY.7	0.999608
S	681	P681R	cCt	cGt	5029	5034	AY.46.5	0.997817
S	681	P681R	cCT	cGC	5	5034	AY.46.5	0.000992
S	681	P681R	cCt	cGt	4782	4783	AY.70	0.997081
S	681	P681R	cCT	cGC	1	4783	AY.70	0.000209
S	681	P681R	cCt	cGt	4534	4534	AY.29.1	0.999779
S	681	P681H	cCt	cAt	4502	4502	B.1.1	0.08167
S	681	P681R	cCt	cGt	4316	4316	AY.114	0.997458
S	681	P681R	cCt	cGt	4282	4282	AY.35	0.997903
S	681	P681R	cCt	cGt	3651	3651	AY.93	0.996996
S	681	P681R	cCt	cGt	3601	3601	AY.5.4	0.996403
S	681	P681R	cCt	cGt	3574	3574	AY.68	0.978374
S	681	P681R	cCt	cGt	3468	3468	AY.53	0.997125
S	681	P681R	cCt	cGt	3458	3458	AY.92	0.993393
S	681	P681R	cCt	cGt	3454	3454	AY.116	0.990536
S	681	P681R	cCt	cGt	3354	3354	AY.41	0.985891
S	681	P681H	cCt	cAt	3293	3293	B.1.1.318	0.993663
S	681	P681H	cCt	cAt	3278	3278	B.1.575	0.994539
S	681	P681R	cCt	cGt	3205	3206	AY.116.1	0.998131
S	681	P681R	cCT	cGG	1	3206	AY.116.1	0.000311
S	681	P681R	cCt	cGt	3152	3152	AY.37	0.996207
S	681	P681R	cCt	cGt	3139	3139	AY.12	0.992099
S	681	P681R	cCt	cGt	3106	3106	AY.120.1	0.997111
S	681	P681H	cCt	cAt	3098	3101	P.1.7	0.989144
S	681	P681H	cCT	cAC	3	3101	P.1.7	0.000958
S	681	P681R	cCt	cGt	2962	2962	AY.106	0.991962
S	681	P681R	cCt	cGt	2948	2948	AY.5.3	0.994602
S	681	P681H	cCt	cAt	2818	2818	B.1.628	0.992953
S	681	P681R	cCt	cGt	2798	2798	AY.2	0.996439
S	681	P681H	cCt	cAt	2722	2722	B.1	0.024932
S	681	P681R	cCt	cGt	2585	2585	AY.16	0.981397
S	681	P681R	cCt	cGt	2585	2585	AY.63	1
S	681	P681R	cCt	cGt	2521	2521	AY.30	0.997626
S	681	P681R	cCt	cGt	2516	2516	AY.1	0.995647
S	681	P681R	cCt	cGt	2420	2420	AY.4.4	0.99018
S	681	P681R	cCt	cGt	2396	2396	AY.23.1	1
S	681	P681R	cCt	cGt	2329	2329	AY.85	0.994874
S	681	P681R	cCt	cGt	2319	2319	B.1.466.2	0.907277
S	681	P681R	cCt	cGt	2298	2298	AY.24	0.990517
S	681	P681R	cCt	cGt	2288	2288	AY.62	0.99695
S	681	P681R	cCt	cGt	2269	2270	AY.84	0.992563
S	681	P681R	cCT	cGA	1	2270	AY.84	0.000437
S	681	P681R	cCt	cGt	2253	2253	AY.94	0.997344
S	681	P681R	cCt	cGt	2150	2151	AY.67	0.998143
S	681	P681R	cCT	cGA	1	2151	AY.67	0.000464
S	681	P681R	cCt	cGt	2147	2147	AY.48	0.998605
S	681	P681R	cCt	cGt	2134	2134	AY.107	0.994408
S	681	P681R	cCt	cGt	2104	2104	Q.4	0.956799
S	681	P681R	cCt	cGt	2101	2101	AY.16.1	0.987312
S	681	P681R	cCt	cGt	2094	2094	AY.71	0.994774
S	681	P681R	cCt	cGt	2029	2029	AY.101	0.995096
S	681	P681H	cCt	cAt	2014	2014	B.1.2	0.017734
S	681	P681R	cCt	cGt	2003	2003	AY.120.2.1	0.998007
S	681	P681R	cCt	cGt	1973	1973	AY.38	0.985022
S	681	P681H	cCt	cAt	1968	1968	B.1.621.1	0.995448
S	681	P681R	cCt	cGt	1915	1915	B.1	0.01754
S	681	P681R	cCt	cGt	1898	1898	AY.34.1	0.967874
S	681	P681R	cCt	cGt	1883	1883	AY.10	0.99788
S	681	P681R	cCt	cGt	1874	1874	AY.32	0.99787
S	681	P681R	cCt	cGt	1874	1874	AY.59	0.992585
S	681	P681R	cCt	cGt	1868	1868	AY.65	0.995736
S	681	P681R	cCt	cGt	1782	1782	AY.7.2	0.996644
S	681	P681H	cCt	cAt	1780	1780	B.1.623	0.954936
S	681	P681R	cCt	cGt	1675	1675	AY.64	0.997024
S	681	P681R	cCt	cGt	1650	1650	AY.8	1
S	681	P681H	cCt	cAt	1625	1625	Q.2	0.996933
S	681	P681R	cCt	cGt	1563	1563	AY.46.2	0.993011
S	681	P681R	cCt	cGt	1547	1547	AY.105	0.994855
S	681	P681R	cCt	cGt	1520	1520	AY.57	0.997375
S	681	P681R	cCt	cGt	1500	1500	AY.73	0.998004
S	681	P681L	cCt	cTt	1489	1489	All	0.000285
S	681	P681R	cCt	cGt	1461	1461	AY.90	1
S	681	P681R	cCt	cGt	1400	1400	A.23.1	0.985915
S	681	P681R	cCt	cGt	1378	1378	AY.39.1.1	0.998551
S	681	P681R	cCt	cGt	1353	1353	AY.4.1	0.997788
S	681	P681R	cCt	cGt	1336	1336	AY.91	0.975895
S	681	P681R	cCt	cGt	1335	1335	AY.109	0.987426
S	681	P681R	cCt	cGt	1247	1247	AY.50	0.996803
S	681	P681R	cCt	cGt	1236	1236	AY.95	0.940639
S	681	P681R	cCt	cGt	1224	1224	AY.52	0.996743
S	681	P681R	cCt	cGt	1203	1203	AY.86	0.99834
S	681	P681H	cCt	cAt	1203	1203	AZ.2	0.987685
S	681	P681R	cCt	cGt	1195	1195	AY.87	0.995004
S	681	P681R	cCt	cGt	1182	1182	AY.4.3	0.994949
S	681	P681H	cCt	cAt	1152	1152	AZ.1	0.999133
S	681	P681R	cCt	cGt	1124	1125	AY.88	0.993811
S	681	P681R	cCT	cGA	1	1125	AY.88	0.000884
S	681	P681R	cCt	cGt	1100	1100	AY.51	1
S	681	P681R	cCt	cGt	1088	1088	AY.58	0.987296
S	681	P681R	cCt	cGt	1082	1082	AY.55	0.992661
S	681	P681R	cCt	cGt	1061	1061	AY.60	0.99531
S	681	P681R	cCt	cGt	1053	1053	AY.46.3	0.983193
S	681	P681H	cCt	cAt	1048	1048	B.1.620	0.991485
S	681	P681R	cCt	cGt	1036	1036	AY.40	0.999036
S	681	P681H	cCt	cAt	1005	1005	P.1	0.015833
S	681	P681R	cCt	cGt	971	971	AY.46.1	0.99692
S	681	P681R	cCt	cGt	938	938	AY.99	0.98426
S	681	P681R	cCt	cGt	935	935	AY.66	1
S	681	P681R	cCt	cGt	899	899	AY.108	0.99118
S	681	P681H	cCt	cAt	896	896	Q.7	0.995556
S	681	P681R	cCt	cGt	887	887	AY.77	1
S	681	P681R	cCt	cGt	886	886	AY.80	1
S	681	P681R	cCt	cGt	869	869	AY.19	0.990878
S	681	P681H	cCt	cAt	842	842	B.1.1.207	0.995272
S	681	P681R	cCt	cGt	823	823	AY.79	0.996368
S	681	P681R	cCt	cGt	771	771	B.1.551	0.994839
S	681	P681R	cCt	cGt	762	762	AY.120.2	0.979434
S	681	P681R	cCt	cGt	747	747	AY.11	1
S	681	P681R	cCt	cGt	735	735	AY.72	1
S	681	P681R	cCt	cGt	734	734	AY.82	0.995929
S	681	P681H	cCt	cAt	714	714	P.1.1	0.226811
S	681	P681H	cCt	cAt	657	657	AZ.3	0.99848
S	681	P681R	cCt	cGt	649	649	AY.39.2	1
S	681	P681R	cCt	cGt	647	647	AY.78	0.996918
S	681	P681R	cCt	cGt	640	640	AY.99.1	0.993789
S	681	P681H	cCt	cAt	621	621	P.3	0.990431
S	681	P681R	cCt	cGt	620	620	AY.56	0.995185
S	681	P681R	cCt	cGt	586	586	AY.97	0.996599
S	681	P681R	cCt	cGt	578	578	AY.83	0.996552
S	681	P681R	cCt	cGt	524	524	AY.21	0.994307
S	681	P681H	cCt	cAt	514	514	P.1.6	1
S	681	P681R	cCt	cGt	513	513	AY.28	0.969754
S	681	P681H	cCt	cAt	508	508	B.1.474	0.965779
S	681	P681R	cCt	cGt	506	506	AY.9.2.1	1
S	681	P681R	cCt	cGt	501	501	AY.81	0.998008
S	681	P681R	cCt	cGt	498	498	AY.104	0.988095
S	681	P681H	cCt	cAt	491	491	B.1.627	0.991919
S	681	P681R	cCt	cGt	477	477	AY.22	0.997908
S	681	P681H	cCt	cAt	475	475	B.1.400	0.203775
S	681	P681R	cCt	cGt	473	473	AU.3	0.99789
S	681	P681R	cCt	cGt	449	449	AY.15	0.997778
S	681	P681R	cCt	cGt	412	412	AU.2	0.997579
S	681	P681R	cCt	cGt	406	406	AY.5.2	1
S	681	P681R	cCt	cGt	399	399	AY.96	0.827801
S	681	P681H	cCt	cAt	396	396	B.1.575.1	0.965854
S	681	P681H	cCt	cAt	391	391	B.1.637	0.028571
S	681	P681H	cCt	cAt	355	355	B.1.1.351	0.99162
S	681	P681L	cCt	cTt	340	340	B.1.570	1
S	681	P681R	cCt	cGt	334	334	B.1.617.3	0.997015
S	681	P681R	cCt	cGt	311	311	AY.49	0.99361
S	681	P681R	cCt	cGt	305	305	B.1.1.25	0.173394
S	681	P681H	cCt	cAt	297	297	AZ.4	0.996644
S	681	P681H	cCt	cAt	296	296	B.1.631	0.996633
S	681	P681H	cCt	cAt	285	285	AZ.5	1
S	681	P681R	cCt	cGt	265	265	AY.5.1	0.996241
S	681	P681H	cCt	cAt	259	259	B.1.1.306	0.113547
S	681	P681R	cCt	cGt	245	245	AY.91.1	0.995935
S	681	P681H	cCt	cAt	240	240	B.1.1.50	0.162933
S	681	P681H	cCt	cAt	230	230	B.1.469	0.830325
S	681	P681R	cCt	cGt	223	223	B	0.028502
S	681	P681H	cCt	cAt	214	214	B.1.576	0.194016
S	681	P681R	cCt	cGt	209	209	P.1.8	1
S	681	P681H	cCt	cAt	208	208	B.1.575.2	1
S	681	P681R	cCt	cGt	207	207	AY.76	1
S	681	P681H	cCt	cAt	206	206	B.1.596	0.017951
S	681	P681R	cCt	cGt	204	204	AY.89	1
S	681	P681H	cCt	cAt	195	195	AV.1	0.984848
S	681	P681R	cCt	cGt	189	189	B.1.1.7	0.000169
S	681	P681L	cCt	cTt	187	187	B.1.1.214	0.01037
S	681	P681H	cCt	cAt	187	187	B.1.177.73	0.105889
S	681	P681R	cCt	cGt	184	184	AY.115	0.958333
S	681	P681H	cCt	cAt	176	176	B.1.1.526	0.624113
S	681	P681H	cCt	cAt	166	166	B.1.427	0.008383
S	681	P681Y	CCt	TAt	155	155	All	0.00003
S	681	P681H	cCt	cAt	151	151	Q.6	1
S	681	P681R	cCt	cGt	148	150	C.36	0.134791
S	681	P681R	cCT	cGG	2	150	C.36	0.001821
S	681	P681P	ccT	ccC	74	146	All	0.000014
S	681	P681P	ccT	ccA	49	146	All	0.000009
S	681	P681P	ccT	ccG	23	146	All	0.000004
S	681	P681R	cCt	cGt	136	136	B.1.1.528	0.653846
S	681	P681H	cCt	cAt	136	136	B.1.609	0.065197
S	681	P681H	cCt	cAt	133	133	B.1.1.228	0.405488
S	681	P681S	Cct	Tct	131	132	All	0.000025
S	681	P681S	CCt	AGt	1	132	All	0
S	681	P681H	cCt	cAt	132	132	B.1.632	0.885906
S	681	P681H	cCt	cAt	130	130	B.1.415.1	0.984848
S	681	P681H	cCt	cAt	128	128	B.1.617.2	0.000482
S	681	P681H	cCt	cAt	123	123	AZ.2.1	1
S	681	P681R	cCt	cGt	123	123	B.1.1	0.002231
S	681	P681R	cCt	cGt	120	120	AY.17	0.983607
S	681	P681H	cCt	cAt	119	119	AZ.6	1
S	681	P681H	cCt	cAt	115	115	B.1.258	0.007653
S	681	P681Y	CCt	TAt	109	109	B.1.1.7	0.000098
S	681	P681H	cCt	cAt	106	106	B.1.375	0.086885
S	681	P681H	cCt	cAt	102	102	AY.103	0.000633
S	681	P681H	cCt	cAt	102	102	B.1.177	0.001343
S	681	P681R	cCt	cGt	99	99	AY.18	1
S	681	P681R	cCt	cGt	99	99	B.1.1.526	0.351064
S	681	P681H	cCt	cAt	99	99	B.1.530	0.707143
S	681	P681R	cCt	cGt	98	98	P.1.11	1
S	681	P681L	cCt	cTt	92	92	B.1.258	0.006122
S	681	P681L	cCt	cTt	90	90	B.1	0.000824
S	681	P681del	CCT	---	85	85	All	0.000016
S	681	P681H	cCt	cAt	85	85	C.16	0.090138
S	681	P681H	cCt	cAt	79	79	B.1.1.1	0.025809
S	681	P681H	cCt	cAt	79	79	Q.4	0.035925
S	681	P681H	cCt	cAt	77	77	B.1.320	0.09589
S	681	P681H	cCt	cAt	70	70	B.1.629	0.933333
S	681	P681H	cCt	cAt	67	67	B.1.1.263	0.104361
S	681	P681R	cCt	cGt	67	67	B.1.1.50	0.045485
S	681	P681H	cCt	cAt	66	66	AY.4	0.000103
S	681	P681R	cCt	cGt	63	63	B.1.596	0.00549
S	681	P681H	cCt	cAt	62	62	B.1.1.161	0.219081
S	681	P681H	cCt	cAt	62	62	B.1.429	0.001459
S	681	P681L	cCt	cTt	61	61	B.1.1	0.001107
S	681	P681H	cCt	cAt	61	61	B.1.258.24	0.655914
S	681	P681H	cCt	cAt	60	60	B.1.462	0.434783
S	681	P681L	cCt	cTt	59	59	AY.4	0.000092
S	681	P681H	cCt	cAt	59	59	B.1.1.336	0.983333
S	681	P681H	cCt	cAt	58	58	B.1.1.338	1
S	681	P681H	cCt	cAt	58	58	B.1.36	0.008462
S	681	P681H	cCt	cAt	58	58	Q.5	0.983051
S	681	P681R	cCt	cGt	57	57	B.1.1.334	0.934426
S	681	P681H	cCt	cAt	57	57	B.1.595	0.014875
S	681	P681H	cCt	cAt	56	56	AY.44	0.000341
S	681	P681H	cCt	cAt	56	56	B.1.526	0.001316
S	681	P681R	cCt	cGt	55	55	P.1	0.000866
S	681	P681R	cCt	cGt	54	54	AY.31	1
S	681	P681H	cCt	cAt	54	54	AY.43	0.000239
S	681	P681H	cCt	cAt	54	54	B	0.006902
S	681	P681H	cCt	cAt	54	54	B.1.1.409	0.152975
S	681	P681R	cCt	cGt	54	54	B.1.604	0.931034
S	681	P681H	cCt	cAt	53	53	B.1.1.522	0.913793
S	681	P681H	cCt	cAt	52	52	B.1.351	0.001546
S	681	P681H	cCt	cAt	49	49	B.1.221	0.003481
S	681	P681P	ccT	ccA	45	47	B.1	0.000412
S	681	P681P	ccT	ccC	2	47	B.1	0.000018
S	681	P681L	cCt	cTt	47	47	B.1.2	0.000414
S	681	P681R	cCt	cGt	47	47	B.1.351	0.001397
S	681	P681H	cCt	cAt	47	47	B.1.36.8	0.047
S	681	P681H	cCt	cAt	46	46	B.1.1.466	0.4
S	681	P681H	cCt	cAt	46	46	B.1.470	0.064607
S	681	P681H	cCt	cAt	45	45	AY.25	0.000271
S	681	P681H	cCt	cAt	45	45	XA	1
S	681	P681H	cCt	cAt	44	44	B.1.36.29	0.022763
S	681	P681H	cCt	cAt	43	43	B.1.1.465	0.671875
S	681	P681R	cCt	cGt	42	42	B.1.1.141	0.084507
S	681	P681R	cCt	cGt	42	42	B.1.462	0.304348
S	681	P681H	cCt	cAt	41	41	B.1.177.7	0.006759
S	681	P681H	cCt	cAt	41	41	B.1.189	0.175966
S	681	P681H	cCt	cAt	41	41	B.6	0.037307
S	681	P681R	cCt	cGt	39	39	B.1.36.22	0.047101
S	681	P681H	cCt	cAt	38	38	B.1.1.274	0.191919
S	681	P681R	cCt	cGt	37	37	B.1.36.8	0.037
S	681	P681L	cCt	cTt	37	37	B.1.617.2	0.000139
S	681	P681R	cCt	cGt	35	35	A	0.013545
S	681	P681H	cCt	cAt	35	35	B.1.1.216	0.031167
S	681	P681R	cCt	cGt	35	35	Q.8	0.005772
S	681	P681H	cCt	cAt	34	34	B.1.399	0.065764
S	681	P681L	cCt	cTt	33	33	B.1.1.26	0.172775
S	681	P681H	cCt	cAt	33	33	B.1.468	0.188571
S	681	P681H	cCt	cAt	33	33	C.37	0.00383
S	681	P681L	cCt	cTt	31	31	AY.29	0.000489
S	681	P681R	cCt	cGt	31	31	B.1.576	0.028105
S	681	P681L	cCt	cTt	30	30	AY.43	0.000133
S	681	P681H	cCt	cAt	29	29	AY.29	0.000457
S	681	P681H	cCt	cAt	29	29	C.36	0.026412
S	681	P681H	cCt	cAt	28	28	B.1.1.63	0.010802
S	681	P681H	cCt	cAt	28	28	B.1.324	0.044944
S	681	P681Y	CCt	TAt	28	28	B.1.637	0.002046
S	681	P681H	cCt	cAt	28	28	P.1.12	0.013553
S	681	P681H	cCt	cAt	26	26	B.1.1.528	0.125
S	681	P681R	cCt	cGt	26	26	B.1.2	0.000229
S	681	P681L	cCt	cTt	25	25	P.1	0.000394
S	681	P681H	cCt	cAt	24	24	P.1.17	0.003882
S	681	P681C	CCt	TGt	23	23	All	0.000004
S	681	P681L	cCt	cTt	23	23	AY.103	0.000143
S	681	P681L	cCt	cTt	23	23	B.1.494	0.793103
S	681	P681H	cCt	cAt	22	22	A	0.008514
S	681	P681H	cCt	cAt	22	22	B.1.1.189	0.033283
S	681	P681H	cCt	cAt	22	22	B.1.1.220	0.040892
S	681	P681H	cCt	cAt	22	22	B.1.1.222	0.004488
S	681	P681R	cCt	cGt	22	22	B.1.177	0.00029
S	681	P681R	cCt	cGt	22	22	B.1.623	0.011803
S	681	P681H	cCt	cAt	21	21	B.1.1.312	0.040153
S	681	P681H	cCt	cAt	21	21	B.1.1.46	0.091703
S	681	P681H	cCt	cAt	21	21	B.1.1.507	0.182609
S	681	P681H	cCt	cAt	20	20	B.1.1.28	0.006225
S	681	P681R	cCt	cGt	20	20	C.37	0.002321
S	681	P681L	cCt	cTt	18	18	B.1.351	0.000535
S	681	P681H	cCt	cAt	18	18	B.1.416	0.022843
S	681	P681R	cCt	cGt	18	18	B.1.474	0.034221
S	681	P681H	cCt	cAt	18	18	P.1.16	0.006734
S	681	P681H	cCt	cAt	17	17	B.1.1.319	0.298246
S	681	P681R	cCt	cGt	17	17	B.1.633	0.708333
S	681	P681R	cCt	cGt	16	16	B.1.621	0.001416
S	681	P681P	ccT	ccG	15	15	B	0.001917
S	681	P681H	cCt	cAt	15	15	B.1.1.163	0.114504
S	681	P681H	cCt	cAt	15	15	B.1.36.1	0.017104
S	681	P681H	cCt	cAt	15	15	C.1.2	0.06383
S	681	P681del1	Cct	-ct	12	14	All	0.000002
S	681	P681del1	ccT	cc-	2	14	All	0
S	681	P681H	cCt	cAt	14	14	B.1.160	0.000437
S	681	P681R	cCt	cGt	14	14	B.1.243	0.000974
S	681	P681L	cCt	cTt	14	14	B.1.526	0.000329
S	681	P681H	cCt	cAt	14	14	B.1.580	0.056911
S	681	P681S	Cct	Tct	14	14	C.37	0.001625
S	681	P681H	cCt	cAt	14	14	P.1.15	0.003253
S	681	P681H	cCt	cAt	13	13	AY.20	0.000505
S	681	P681H	cCt	cAt	13	13	AY.4.2.1	0.001937
S	681	P681H	cCt	cAt	13	13	B.1.1.205	0.048327
S	681	P681L	cCt	cTt	13	13	B.1.1.7	0.000012
S	681	P681H	cCt	cAt	13	13	B.1.157	0.038806
S	681	P681L	cCt	cTt	13	13	B.1.429	0.000306
S	681	P681H	cCt	cAt	12	12	A.19	0.113208
S	681	P681T	Cct	Act	12	12	All	0.000002
S	681	P681H	cCt	cAt	12	12	AY.26	0.00034
S	681	P681L	cCt	cTt	12	12	AY.39.1	0.000475
S	681	P681H	cCt	cAt	12	12	AY.74	0.001388
S	681	P681S	Cct	Tct	12	12	B.1.1	0.000218
S	681	P681H	cCt	cAt	12	12	B.1.1.10	0.013378
S	681	P681H	cCt	cAt	12	12	B.1.258.17	0.001248
S	681	P681H	cCt	cAt	12	12	B.1.574	0.025806
S	681	P681H	cCt	cAt	11	11		0.611111
S	681	P681L	cCt	cTt	11	11	AY.25	0.000066
S	681	P681H	cCt	cAt	11	11	AY.42	0.000443
S	681	P681H	cCt	cAt	11	11	AY.99.2	0.001014
S	681	P681S	Cct	Tct	11	11	B.1	0.000101
S	681	P681H	cCt	cAt	11	11	B.1.1.269	0.014885
S	681	P681H	cCt	cAt	11	11	B.1.1.317	0.004529
S	681	P681L	cCt	cTt	11	11	B.1.221	0.000781
S	681	P681L	cCt	cTt	11	11	B.1.36	0.001605
S	681	P681H	cCt	cAt	11	11	B.1.367	0.008716
S	681	P681H	cCt	cAt	11	11	C.36.3	0.006239
S	681	P681H	cCt	cAt	10	10	AY.39	0.000247
S	681	P681del	CCT	---	10	10	B.1	0.000092
S	681	P681P	ccT	ccC	8	10	P.1	0.000126
S	681	P681P	ccT	ccG	2	10	P.1	0.000032
S	681	P681L	cCt	cTt	10	10	P.1.14	0.000478
S	681	P681L	cCt	cTt	10	10	R.1	0.0009
S	681	P681H	cCt	cAt	9	9	AY.102	0.000239
S	681	P681H	cCt	cAt	9	9	AY.3	0.00009
S	681	P681H	cCt	cAt	9	9	AY.93	0.002458
S	681	P681R	cCt	cGt	9	9	B.1.1.216	0.008014
S	681	P681H	cCt	cAt	9	9	B.1.1.275	0.101124
S	681	P681L	cCt	cTt	9	9	B.1.1.277	0.006829
S	681	P681Y	CCt	TAt	9	9	B.1.1.519	0.000357
S	681	P681H	cCt	cAt	9	9	B.1.139	0.006598
S	681	P681L	cCt	cTt	9	9	B.1.177	0.000119
S	681	P681R	cCt	cGt	9	9	B.1.526	0.000212
S	681	P681H	cCt	cAt	9	9	B.1.533	0.086538
S	681	P681H	cCt	cAt	9	9	B.1.617.1	0.001161
S	681	P681R	cCt	cGt	9	9	B.1.632	0.060403
S	681	P681H	cCt	cAt	9	9	B.1.638	0.473684
S	681	P681H	cCt	cAt	9	9	C.35	0.006966
S	681	P681H	cCt	cAt	8	8	A.2.5	0.003992
S	681	P681L	cCt	cTt	8	8	AY.44	0.000049
S	681	P681R	cCt	cGt	8	8	B.1.1.1	0.002614
S	681	P681H	cCt	cAt	8	8	B.1.1.17	0.133333
S	681	P681H	cCt	cAt	8	8	B.1.1.224	0.114286
S	681	P681H	cCt	cAt	8	8	B.1.1.294	0.010127
S	681	P681H	cCt	cAt	8	8	B.1.1.70	0.002729
S	681	P681P	ccT	ccC	8	8	B.1.160	0.00025
S	681	P681S	Cct	Tct	8	8	B.1.2	0.00007
S	681	P681H	cCt	cAt	8	8	B.1.234	0.001056
S	681	P681L	cCt	cTt	8	8	B.1.427	0.000404
S	681	P681R	cCt	cGt	8	8	C.14	0.034632
S	681	P681H	cCt	cAt	8	8	R.1	0.00072
S	681	P681L	cCt	cTt	7	7	AY.102	0.000186
S	681	P681H	cCt	cAt	7	7	AY.106	0.002344
S	681	P681L	cCt	cTt	7	7	AY.117	0.000592
S	681	P681L	cCt	cTt	7	7	AY.120	0.00026
S	681	P681C	CCt	TGt	7	7	AY.4	0.000011
S	681	P681del	CCT	---	7	7	B	0.000895
S	681	P681H	cCt	cAt	7	7	B.1.1.225	0.05036
S	681	P681H	cCt	cAt	7	7	B.1.1.25	0.00398
S	681	P681H	cCt	cAt	7	7	B.1.1.277	0.005311
S	681	P681P	ccT	ccC	7	7	B.1.1.39	0.003568
S	681	P681H	cCt	cAt	7	7	B.1.1.447	0.25
S	681	P681del	CCT	---	7	7	B.1.1.7	0.000006
S	681	P681P	ccT	ccC	7	7	B.1.128	0.004447
S	681	P681R	cCt	cGt	7	7	B.1.258	0.000466
S	681	P681S	Cct	Tct	7	7	B.1.351.2	0.002118
S	681	P681H	cCt	cAt	7	7	B.1.369	0.001997
S	681	P681del	CCT	---	7	7	B.1.617.2	0.000026
S	681	P681R	cCt	cGt	7	7	P.1.7	0.002235
S	681	P681L	cCt	cTt	7	7	P.5	0.09589
S	681	P681H	cCt	cAt	6	6	AT.1	0.030769
S	681	P681H	cCt	cAt	6	6	AY.110	0.000676
S	681	P681L	cCt	cTt	6	6	AY.27	0.000388
S	681	P681H	cCt	cAt	6	6	AY.4.2	0.00013
S	681	P681del	CCT	---	6	6	AY.43	0.000027
S	681	P681H	cCt	cAt	6	6	AY.47	0.000187
S	681	P681H	cCt	cAt	6	6	AY.75.1	0.001082
S	681	P681H	cCt	cAt	6	6	AY.9.2	0.00022
S	681	P681H	cCt	cAt	6	6	B.1.1.171	0.022059
S	681	P681R	cCt	cGt	6	6	B.1.1.294	0.007595
S	681	P681R	cCt	cGt	6	6	B.1.1.34	0.078947
S	681	P681H	cCt	cAt	6	6	B.1.1.485	0.1
S	681	P681S	Cct	Tct	6	6	B.1.177	0.000079
S	681	P681R	cCt	cGt	6	6	B.1.214	0.021978
S	681	P681L	cCt	cTt	6	6	B.1.234	0.000792
S	681	P681H	cCt	cAt	6	6	B.1.241	0.00487
S	681	P681H	cCt	cAt	6	6	B.1.330	0.171429
S	681	P681R	cCt	cGt	6	6	B.1.36	0.000875
S	681	P681R	cCt	cGt	6	6	B.1.36.31	0.010508
S	681	P681R	cCt	cGt	6	6	B.1.469	0.021661
S	681	P681P	ccT	ccC	6	6	B.1.595	0.001566
S	681	P681H	cCt	cAt	6	6	B.1.619	0.005226
S	681	P681R	cCt	cGt	6	6	B.1.628	0.002114
S	681	P681H	cCt	cAt	6	6	P.5	0.082192
S	681	P681H	cCt	cAt	5	5	A.30	0.714286
S	681	P681Q	cCT	cAG	3	5	All	0.000001
S	681	P681Q	cCT	cAA	2	5	All	0
S	681	P681L	cCt	cTt	5	5	AY.26	0.000142
S	681	P681L	cCt	cTt	5	5	AY.4.2	0.000108
S	681	P681L	cCt	cTt	5	5	AY.5	0.000103
S	681	P681H	cCt	cAt	5	5	AY.95	0.003805
S	681	P681H	cCt	cAt	5	5	B.1.1.194	0.024752
S	681	P681L	cCt	cTt	5	5	B.1.1.284	0.000537
S	681	P681R	cCt	cGt	5	5	B.1.1.306	0.002192
S	681	P681R	cCt	cGt	5	5	B.1.1.317	0.002058
S	681	P681L	cCt	cTt	5	5	B.1.1.39	0.002548
S	681	P681S	Cct	Tct	5	5	B.1.1.428	0.04717
S	681	P681P	ccT	ccC	3	5	B.1.177	0.00004
S	681	P681P	ccT	ccG	2	5	B.1.177	0.000026
S	681	P681H	cCt	cAt	5	5	B.1.177.31	0.057471
S	681	P681R	cCt	cGt	5	5	B.1.177.86	0.000917
S	681	P681H	cCt	cAt	5	5	B.1.214	0.018315
S	681	P681H	cCt	cAt	5	5	B.1.311	0.001373
S	681	P681R	cCt	cGt	5	5	B.1.36.1	0.005701
S	681	P681R	cCt	cGt	5	5	B.1.369	0.001426
S	681	P681R	cCt	cGt	5	5	B.1.375	0.004098
S	681	P681H	cCt	cAt	5	5	B.1.380	0.033113
S	681	P681H	cCt	cAt	5	5	B.1.396	0.003529
S	681	P681H	cCt	cAt	5	5	B.1.411	0.018519
S	681	P681R	cCt	cGt	5	5	B.1.459	0.020408
S	681	P681H	cCt	cAt	5	5	B.1.497	0.001574
S	681	P681L	cCt	cTt	5	5	B.1.525	0.000566
S	681	P681H	cCt	cAt	5	5	B.1.599	0.018248
S	681	P681H	cCt	cAt	5	5	B.1.602	0.03268
S	681	P681L	cCt	cTt	5	5	P.1.17	0.000809
S	681	P681H	cCt	cAt	4	4	A.1	0.001127
S	681	P681H	cCt	cAt	4	4	AY.101	0.001962
S	681	P681L	cCt	cTt	4	4	AY.107	0.001864
S	681	P681H	cCt	cAt	4	4	AY.23	0.000279
S	681	P681H	cCt	cAt	4	4	AY.45	0.000487
S	681	P681H	cCt	cAt	4	4	AY.54	0.000381
S	681	P681H	cCt	cAt	4	4	AY.61	0.000419
S	681	P681H	cCt	cAt	4	4	AY.68	0.001095
S	681	P681H	cCt	cAt	4	4	AY.75	0.000224
S	681	P681H	cCt	cAt	4	4	AY.96	0.008299
S	681	P681L	cCt	cTt	4	4	AY.98.1	0.000194
S	681	P681H	cCt	cAt	4	4	B.1.1.13	0.142857
S	681	P681H	cCt	cAt	4	4	B.1.1.142	0.070175
S	681	P681H	cCt	cAt	4	4	B.1.1.198	0.005874
S	681	P681H	cCt	cAt	4	4	B.1.1.236	0.027586
S	681	P681P	ccT	ccC	4	4	B.1.1.241	0.008282
S	681	P681H	cCt	cAt	4	4	B.1.1.288	0.007663
S	681	P681S	Cct	Tct	4	4	B.1.1.305	0.015444
S	681	P681R	cCt	cGt	4	4	B.1.1.311	0.001433
S	681	P681H	cCt	cAt	4	4	B.1.1.348	0.003185
S	681	P681H	cCt	cAt	4	4	B.1.1.372	0.002755
S	681	P681H	cCt	cAt	4	4	B.1.1.389	0.024242
S	681	P681H	cCt	cAt	4	4	B.1.1.39	0.002039
S	681	P681H	cCt	cAt	4	4	B.1.1.419	0.02963
S	681	P681H	cCt	cAt	4	4	B.1.1.44	0.009639
S	681	P681R	cCt	cGt	4	4	B.1.1.519	0.000159
S	681	P681R	cCt	cGt	4	4	B.1.1.523	0.00625
S	681	P681H	cCt	cAt	4	4	B.1.1.523	0.00625
S	681	P681R	cCt	cGt	4	4	B.1.1.53	0.054795
S	681	P681R	cCt	cGt	4	4	B.1.157	0.01194
S	681	P681H	cCt	cAt	4	4	B.1.160.10	0.032258
S	681	P681P	ccT	ccA	4	4	B.1.177.54	0.002426
S	681	P681R	cCt	cGt	4	4	B.1.192	0.037037
S	681	P681H	cCt	cAt	4	4	B.1.214.2	0.002398
S	681	P681S	Cct	Tct	4	4	B.1.240	0.000862
S	681	P681L	cCt	cTt	4	4	B.1.258.17	0.000416
S	681	P681H	cCt	cAt	4	4	B.1.366	0.019512
S	681	P681del	CCT	---	4	4	B.1.462	0.028986
S	681	P681S	Cct	Tct	4	4	B.1.526	0.000094
S	681	P681H	cCt	cAt	4	4	B.1.551	0.005161
S	681	P681H	cCt	cAt	4	4	B.1.560	0.018519
S	681	P681R	cCt	cGt	4	4	B.1.629	0.053333
S	681	P681H	cCt	cAt	4	4	B.1.633	0.166667
S	681	P681R	cCt	cGt	4	4	B.1.637	0.000292
S	681	P681H	cCt	cAt	4	4	C.17	0.222222
S	681	P681H	cCt	cAt	4	4	C.36.3.1	0.01087
S	681	P681L	cCt	cTt	4	4	C.37	0.000464
S	681	P681H	cCt	cAt	4	4	P.1.14	0.000191
S	681	P681R	cCt	cGt	3	3		0.166667
S	681	P681H	cCt	cAt	3	3	AY.100	0.000138
S	681	P681H	cCt	cAt	3	3	AY.113	0.000427
S	681	P681H	cCt	cAt	3	3	AY.118	0.000188
S	681	P681H	cCt	cAt	3	3	AY.120	0.000112
S	681	P681L	cCt	cTt	3	3	AY.121	0.000406
S	681	P681H	cCt	cAt	3	3	AY.24	0.001293
S	681	P681L	cCt	cTt	3	3	AY.24	0.001293
S	681	P681del	CCT	---	3	3	AY.25	0.000018
S	681	P681L	cCt	cTt	3	3	AY.3	0.00003
S	681	P681L	cCt	cTt	3	3	AY.39	0.000074
S	681	P681C	CCt	TGt	3	3	AY.4.2	0.000065
S	681	P681H	cCt	cAt	3	3	AY.5	0.000062
S	681	P681H	cCt	cAt	3	3	AY.53	0.000863
S	681	P681L	cCt	cTt	3	3	AY.6	0.000123
S	681	P681L	cCt	cTt	3	3	AY.68	0.000821
S	681	P681H	cCt	cAt	3	3	AY.70	0.000626
S	681	P681H	cCt	cAt	3	3	AY.92	0.000862
S	681	P681T	Cct	Act	3	3	B.1	0.000027
S	681	P681H	cCt	cAt	3	3	B.1.1.133	0.025424
S	681	P681H	cCt	cAt	3	3	B.1.1.174	0.010135
S	681	P681H	cCt	cAt	3	3	B.1.1.265	0.009464
S	681	P681H	cCt	cAt	3	3	B.1.1.27	0.016949
S	681	P681S	Cct	Tct	3	3	B.1.1.28	0.000934
S	681	P681H	cCt	cAt	3	3	B.1.1.299	0.036585
S	681	P681L	cCt	cTt	3	3	B.1.1.308	0.035294
S	681	P681H	cCt	cAt	3	3	B.1.1.344	0.032258
S	681	P681R	cCt	cGt	3	3	B.1.1.355	0.046154
S	681	P681L	cCt	cTt	3	3	B.1.1.37	0.000579
S	681	P681H	cCt	cAt	3	3	B.1.1.398	0.009677
S	681	P681R	cCt	cGt	3	3	B.1.1.420	0.003018
S	681	P681H	cCt	cAt	3	3	B.1.1.54	0.009063
S	681	P681H	cCt	cAt	3	3	B.1.1.99	0.071429
S	681	P681S	Cct	Tct	3	3	B.1.126	0.003827
S	681	P681L	cCt	cTt	3	3	B.1.160	0.000094
S	681	P681S	Cct	Tct	3	3	B.1.177.54	0.001819
S	681	P681H	cCt	cAt	3	3	B.1.177.81	0.000568
S	681	P681T	Cct	Act	3	3	B.1.2	0.000026
S	681	P681H	cCt	cAt	3	3	B.1.237	0.014925
S	681	P681R	cCt	cGt	3	3	B.1.247	0.044776
S	681	P681H	cCt	cAt	3	3	B.1.260	0.010033
S	681	P681R	cCt	cGt	3	3	B.1.335	0.030928
S	681	P681H	cCt	cAt	3	3	B.1.351.3	0.002629
S	681	P681H	cCt	cAt	3	3	B.1.36.10	0.014354
S	681	P681R	cCt	cGt	3	3	B.1.36.29	0.001552
S	681	P681P	ccT	ccC	3	3	B.1.427	0.000151
S	681	P681H	cCt	cAt	3	3	B.1.466.2	0.001174
S	681	P681H	cCt	cAt	3	3	B.1.509	0.002597
S	681	P681H	cCt	cAt	3	3	B.1.525	0.000339
S	681	P681P	ccT	ccC	3	3	B.1.526	0.000071
S	681	P681L	cCt	cTt	3	3	B.1.527	0.011111
S	681	P681H	cCt	cAt	3	3	B.1.577	0.002062
S	681	P681L	cCt	cTt	3	3	B.1.577	0.002062
S	681	P681R	cCt	cGt	3	3	B.1.600	0.017544
S	681	P681R	cCt	cGt	3	3	B.1.618	0.012097
S	681	P681H	cCt	cAt	3	3	B.1.636	0.020134
S	681	P681L	cCt	cTt	3	3	C.35	0.002322
S	681	P681P	ccT	ccG	3	3	C.37	0.000348
S	681	P681L	cCt	cTt	3	3	D.2	0.000225
S	681	P681H	cCt	cAt	3	3	N.5	0.0053
S	681	P681L	cCt	cTt	3	3	N.5	0.0053
S	681	P681del	CCT	---	3	3	P.1	0.000047
S	681	P681L	cCt	cTt	3	3	P.1.12	0.001452
S	681	P681H	cCt	cAt	3	3	P.1.13	0.002695
S	681	P681del	CCT	---	3	3	P.1.15	0.000697
S	681	P681S	Cct	Tct	3	3	R.1	0.00027
S	681	P681Q	cCT	cAG	2	2		0.111111
S	681	P681del	CCT	---	2	2		0.111111
S	681	P681del	CCT	---	2	2	A	0.000774
S	681	P681R	cCt	cGt	2	2	A.1	0.000564
S	681	P681H	cCt	cAt	2	2	A.2	0.001324
S	681	P681H	cCt	cAt	2	2	A.2.5.1	0.009615
S	681	P681G	CCt	GGt	2	2	All	0
S	681	P681F	CCt	TTt	2	2	All	0
S	681	P681A	Cct	Gct	2	2	All	0
S	681	P681C	CCt	TGt	2	2	AY.100	0.000092
S	681	P681H	cCt	cAt	2	2	AY.117	0.000169
S	681	P681H	cCt	cAt	2	2	AY.119	0.000071
S	681	P681H	cCt	cAt	2	2	AY.12	0.000632
S	681	P681L	cCt	cTt	2	2	AY.20	0.000078
S	681	P681L	cCt	cTt	2	2	AY.23	0.000139
S	681	P681C	CCt	TGt	2	2	AY.25	0.000012
S	681	P681H	cCt	cAt	2	2	AY.3.1	0.000171
S	681	P681L	cCt	cTt	2	2	AY.36	0.000296
S	681	P681H	cCt	cAt	2	2	AY.36	0.000296
S	681	P681H	cCt	cAt	2	2	AY.39.1	0.000079
S	681	P681del	CCT	---	2	2	AY.4	0.000003
S	681	P681H	cCt	cAt	2	2	AY.41	0.000588
S	681	P681L	cCt	cTt	2	2	AY.42	0.00008
S	681	P681C	CCt	TGt	2	2	AY.43	0.000009
S	681	P681L	cCt	cTt	2	2	AY.46	0.000208
S	681	P681H	cCt	cAt	2	2	AY.46.3	0.001867
S	681	P681L	cCt	cTt	2	2	AY.46.5	0.000397
S	681	P681H	cCt	cAt	2	2	AY.46.6	0.000144
S	681	P681G	CCt	GGt	2	2	AY.47	0.000062
S	681	P681L	cCt	cTt	2	2	AY.47	0.000062
S	681	P681L	cCt	cTt	2	2	AY.61	0.00021
S	681	P681L	cCt	cTt	2	2	AY.71	0.00095
S	681	P681L	cCt	cTt	2	2	AY.9.2	0.000073
S	681	P681L	cCt	cTt	2	2	AY.97	0.003401
S	681	P681L	cCt	cTt	2	2	AY.98	0.000158
S	681	P681H	cCt	cAt	2	2	AY.98.1	0.000097
S	681	P681Y	CCt	TAt	2	2	B.1	0.000018
S	681	P681del1	Cct	-ct	1	2	B.1	0.000009
S	681	P681del1	ccT	cc-	1	2	B.1	0.000009
S	681	P681del	CCT	---	2	2	B.1.1	0.000036
S	681	P681L	cCt	cTt	2	2	B.1.1.1	0.000653
S	681	P681H	cCt	cAt	2	2	B.1.1.117	0.019417
S	681	P681H	cCt	cAt	2	2	B.1.1.121	0.004854
S	681	P681H	cCt	cAt	2	2	B.1.1.135	0.00939
S	681	P681H	cCt	cAt	2	2	B.1.1.137	0.025
S	681	P681H	cCt	cAt	2	2	B.1.1.141	0.004024
S	681	P681H	cCt	cAt	2	2	B.1.1.148	0.017544
S	681	P681H	cCt	cAt	2	2	B.1.1.160	0.047619
S	681	P681H	cCt	cAt	2	2	B.1.1.192	0.004619
S	681	P681H	cCt	cAt	2	2	B.1.1.203	0.033898
S	681	P681H	cCt	cAt	2	2	B.1.1.237	0.010811
S	681	P681H	cCt	cAt	2	2	B.1.1.254	0.022472
S	681	P681L	cCt	cTt	2	2	B.1.1.28	0.000622
S	681	P681H	cCt	cAt	2	2	B.1.1.291	0.001485
S	681	P681H	cCt	cAt	2	2	B.1.1.298	0.001724
S	681	P681L	cCt	cTt	2	2	B.1.1.306	0.000877
S	681	P681del1	Cct	-ct	2	2	B.1.1.306	0.000877
S	681	P681H	cCt	cAt	2	2	B.1.1.327	0.2
S	681	P681H	cCt	cAt	2	2	B.1.1.329	0.007692
S	681	P681H	cCt	cAt	2	2	B.1.1.33	0.000842
S	681	P681L	cCt	cTt	2	2	B.1.1.335	0.025974
S	681	P681H	cCt	cAt	2	2	B.1.1.354	0.008772
S	681	P681H	cCt	cAt	2	2	B.1.1.37	0.000386
S	681	P681H	cCt	cAt	2	2	B.1.1.370	0.025316
S	681	P681H	cCt	cAt	2	2	B.1.1.374	0.004751
S	681	P681H	cCt	cAt	2	2	B.1.1.385	0.008929
S	681	P681S	Cct	Tct	2	2	B.1.1.4	0.005952
S	681	P681R	cCt	cGt	2	2	B.1.1.409	0.005666
S	681	P681H	cCt	cAt	2	2	B.1.1.416	0.00181
S	681	P681H	cCt	cAt	2	2	B.1.1.430	0.083333
S	681	P681H	cCt	cAt	2	2	B.1.1.448	0.004065
S	681	P681H	cCt	cAt	2	2	B.1.1.462	0.017241
S	681	P681P	ccT	ccC	2	2	B.1.1.464	0.002946
S	681	P681R	cCt	cGt	2	2	B.1.1.512	0.057143
S	681	P681L	cCt	cTt	2	2	B.1.1.523	0.003125
S	681	P681H	cCt	cAt	2	2	B.1.1.524	0.041667
S	681	P681H	cCt	cAt	2	2	B.1.1.525	0.010929
S	681	P681H	cCt	cAt	2	2	B.1.1.53	0.027397
S	681	P681L	cCt	cTt	2	2	B.1.1.58	0.010753
S	681	P681L	cCt	cTt	2	2	B.1.1.63	0.000772
S	681	P681Q	cCT	cAG	1	2	B.1.1.7	0.000001
S	681	P681Q	cCT	cAA	1	2	B.1.1.7	0.000001
S	681	P681H	cCt	cAt	2	2	B.1.1.8	0.007168
S	681	P681H	cCt	cAt	2	2	B.1.1.83	0.00542
S	681	P681H	cCt	cAt	2	2	B.1.1.89	0.012121
S	681	P681H	cCt	cAt	2	2	B.1.111	0.00235
S	681	P681S	Cct	Tct	2	2	B.1.160	0.000062
S	681	P681R	cCt	cGt	2	2	B.1.160	0.000062
S	681	P681H	cCt	cAt	2	2	B.1.177.12	0.000303
S	681	P681H	cCt	cAt	2	2	B.1.177.41	0.005
S	681	P681H	cCt	cAt	2	2	B.1.177.44	0.001038
S	681	P681L	cCt	cTt	2	2	B.1.177.44	0.001038
S	681	P681S	Cct	Tct	2	2	B.1.177.56	0.001335
S	681	P681L	cCt	cTt	2	2	B.1.177.58	0.002663
S	681	P681H	cCt	cAt	2	2	B.1.199	0.008264
S	681	P681P	ccT	ccC	2	2	B.1.2	0.000018
S	681	P681del1	Cct	-ct	2	2	B.1.2	0.000018
S	681	P681L	cCt	cTt	2	2	B.1.206	0.001631
S	681	P681S	Cct	Tct	2	2	B.1.221	0.000142
S	681	P681L	cCt	cTt	2	2	B.1.243	0.000139
S	681	P681H	cCt	cAt	2	2	B.1.247	0.029851
S	681	P681S	Cct	Tct	2	2	B.1.258.17	0.000208
S	681	P681R	cCt	cGt	2	2	B.1.258.3	0.00335
S	681	P681L	cCt	cTt	2	2	B.1.279	0.001027
S	681	P681R	cCt	cGt	2	2	B.1.301	0.011834
S	681	P681R	cCt	cGt	2	2	B.1.323	0.041667
S	681	P681del	CCT	---	2	2	B.1.351	0.000059
S	681	P681L	cCt	cTt	2	2	B.1.351.2	0.000605
S	681	P681R	cCt	cGt	2	2	B.1.351.3	0.001753
S	681	P681H	cCt	cAt	2	2	B.1.36.17	0.000988
S	681	P681R	cCt	cGt	2	2	B.1.36.17	0.000988
S	681	P681R	cCt	cGt	2	2	B.1.367	0.001585
S	681	P681R	cCt	cGt	2	2	B.1.380	0.013245
S	681	P681L	cCt	cTt	2	2	B.1.385	0.021277
S	681	P681R	cCt	cGt	2	2	B.1.415.1	0.015152
S	681	P681R	cCt	cGt	2	2	B.1.427	0.000101
S	681	P681R	cCt	cGt	2	2	B.1.441	0.019231
S	681	P681L	cCt	cTt	2	2	B.1.462	0.014493
S	681	P681S	Cct	Tct	2	2	B.1.471	0.005464
S	681	P681H	cCt	cAt	2	2	B.1.517	0.000854
S	681	P681S	Cct	Tct	2	2	B.1.525	0.000226
S	681	P681R	cCt	cGt	2	2	B.1.530	0.014286
S	681	P681R	cCt	cGt	2	2	B.1.564	0.000852
S	681	P681L	cCt	cTt	2	2	B.1.564	0.000852
S	681	P681H	cCt	cAt	2	2	B.1.564	0.000852
S	681	P681Y	CCt	TAt	2	2	B.1.575	0.000607
S	681	P681L	cCt	cTt	2	2	B.1.580	0.00813
S	681	P681R	cCt	cGt	2	2	B.1.582	0.000981
S	681	P681L	cCt	cTt	2	2	B.1.595	0.000522
S	681	P681S	Cct	Tct	2	2	B.1.596	0.000174
S	681	P681del	CCT	---	2	2	B.1.596	0.000174
S	681	P681R	cCt	cGt	2	2	B.1.609	0.000959
S	681	P681R	cCt	cGt	2	2	B.1.619	0.001742
S	681	P681del	CCT	---	2	2	B.1.621	0.000177
S	681	P681H	cCt	cAt	2	2	B.1.625	0.004706
S	681	P681H	cCt	cAt	2	2	B.1.634	0.006849
S	681	P681H	cCt	cAt	2	2	B.1.78	0.017094
S	681	P681S	Cct	Tct	2	2	B.40	0.000729
S	681	P681R	cCt	cGt	2	2	B.6	0.00182
S	681	P681R	cCt	cGt	2	2	C.18	0.005181
S	681	P681R	cCt	cGt	2	2	C.33	0.117647
S	681	P681R	cCt	cGt	2	2	C.36.3.1	0.005435
S	681	P681R	cCt	cGt	2	2	C.37.1	0.005236
S	681	P681H	cCt	cAt	2	2	C.38	0.016129
S	681	P681S	Cct	Tct	2	2	C.8	0.008929
S	681	P681L	cCt	cTt	2	2	L.1	0.00381
S	681	P681R	cCt	cGt	2	2	L.3	0.007092
S	681	P681R	cCt	cGt	2	2	P.1.1	0.000635
S	681	P681H	cCt	cAt	2	2	P.1.10.1	0.01626
S	681	P681R	cCt	cGt	2	2	P.1.13	0.001797
S	681	P681L	cCt	cTt	2	2	P.1.15	0.000465
S	681	P681R	cCt	cGt	2	2	P.1.16	0.000748
S	681	P681R	cCt	cGt	2	2	P.1.17	0.000324
S	681	P681R	cCt	cGt	2	2	P.1.17.1	0.00175
S	681	P681H	cCt	cAt	2	2	P.2	0.000373
S	681	P681Y	CCt	TAt	2	2	Q.1	0.000253
S	681	P681Y	CCt	TAt	2	2	Q.8	0.00033
S	681	P681del	CCT	---	1	1	A.1	0.000282
S	681	P681T	Cct	Act	1	1	A.2	0.000662
S	681	P681H	cCt	cAt	1	1	A.2.5.2	0.001572
S	681	P681P	ccT	ccC	1	1	A.2.5.2	0.001572
S	681	P681H	cCt	cAt	1	1	A.21	0.00277
S	681	P681H	cCt	cAt	1	1	A.23.1	0.000704
S	681	P681H	cCt	cAt	1	1	A.25	0.018182
S	681	P681H	cCt	cAt	1	1	A.27	0.001656
S	681	P681H	cCt	cAt	1	1	A.7	0.055556
S	681	P681S	Cct	Tct	1	1	AD.2	0.000219
S	681	P681L	cCt	cTt	1	1	AE.8	0.000489
S	681	P681del2	cCT	c--	1	1	All	0
S	681	P681X	CCT	TAG	1	1	All	0
S	681	P681H	cCt	cAt	1	1	AU.2	0.002421
S	681	P681H	cCt	cAt	1	1	AU.3	0.00211
S	681	P681C	CCt	TGt	1	1	AY.10	0.00053
S	681	P681del	CCT	---	1	1	AY.103	0.000006
S	681	P681H	cCt	cAt	1	1	AY.108	0.001103
S	681	P681L	cCt	cTt	1	1	AY.111	0.000183
S	681	P681L	cCt	cTt	1	1	AY.119	0.000035
S	681	P681del1	ccT	cc-	1	1	AY.120	0.000037
S	681	P681H	cCt	cAt	1	1	AY.120.1	0.000321
S	681	P681L	cCt	cTt	1	1	AY.120.1	0.000321
S	681	P681H	cCt	cAt	1	1	AY.121	0.000135
S	681	P681H	cCt	cAt	1	1	AY.13	0.000161
S	681	P681L	cCt	cTt	1	1	AY.13	0.000161
S	681	P681H	cCt	cAt	1	1	AY.14	0.000088
S	681	P681L	cCt	cTt	1	1	AY.15	0.002222
S	681	P681del1	Cct	-ct	1	1	AY.16	0.00038
S	681	P681H	cCt	cAt	1	1	AY.19	0.00114
S	681	P681C	CCt	TGt	1	1	AY.23	0.00007
S	681	P681C	CCt	TGt	1	1	AY.26	0.000028
S	681	P681H	cCt	cAt	1	1	AY.27	0.000065
S	681	P681L	cCt	cTt	1	1	AY.29.1	0.000221
S	681	P681del	CCT	---	1	1	AY.3	0.00001
S	681	P681L	cCt	cTt	1	1	AY.30	0.000396
S	681	P681H	cCt	cAt	1	1	AY.38	0.000499
S	681	P681L	cCt	cTt	1	1	AY.4.3	0.000842
S	681	P681C	CCt	TGt	1	1	AY.42	0.00004
S	681	P681F	CCt	TTt	1	1	AY.43	0.000004
S	681	P681C	CCt	TGt	1	1	AY.44	0.000006
S	681	P681del1	Cct	-ct	1	1	AY.44	0.000006
S	681	P681S	CCt	AGt	1	1	AY.44	0.000006
S	681	P681H	cCt	cAt	1	1	AY.46	0.000104
S	681	P681del	CCT	---	1	1	AY.46.2	0.000635
S	681	P681H	cCt	cAt	1	1	AY.46.2	0.000635
S	681	P681H	cCt	cAt	1	1	AY.46.5	0.000198
S	681	P681H	cCt	cAt	1	1	AY.5.4	0.000277
S	681	P681H	cCt	cAt	1	1	AY.52	0.000814
S	681	P681H	cCt	cAt	1	1	AY.62	0.000436
S	681	P681H	cCt	cAt	1	1	AY.65	0.000533
S	681	P681Q	cCT	cAA	1	1	AY.67	0.000464
S	681	P681H	cCt	cAt	1	1	AY.67	0.000464
S	681	P681L	cCt	cTt	1	1	AY.7	0.000196
S	681	P681C	CCt	TGt	1	1	AY.71	0.000475
S	681	P681H	cCt	cAt	1	1	AY.73	0.000665
S	681	P681L	cCt	cTt	1	1	AY.75	0.000056
S	681	P681H	cCt	cAt	1	1	AY.79	0.001211
S	681	P681L	cCt	cTt	1	1	AY.83	0.001724
S	681	P681del	CCT	---	1	1	AY.84	0.000437
S	681	P681H	cCt	cAt	1	1	AY.85	0.000427
S	681	P681H	cCt	cAt	1	1	AY.87	0.000833
S	681	P681L	cCt	cTt	1	1	AY.88	0.000884
S	681	P681H	cCt	cAt	1	1	AY.9	0.000068
S	681	P681L	cCt	cTt	1	1	AY.9	0.000068
S	681	P681L	cCt	cTt	1	1	AY.9.1	0.000084
S	681	P681del1	Cct	-ct	1	1	AY.9.2	0.000037
S	681	P681del	CCT	---	1	1	AY.9.2	0.000037
S	681	P681L	cCt	cTt	1	1	AY.92	0.000287
S	681	P681C	CCt	TGt	1	1	AY.98	0.000079
S	681	P681del	CCT	---	1	1	AY.99	0.001049
S	681	P681H	cCt	cAt	1	1	AY.99	0.001049
S	681	P681H	cCt	cAt	1	1	AY.99.1	0.001553
S	681	P681S	Cct	Tct	1	1	B	0.000128
S	681	P681A	Cct	Gct	1	1	B.1	0.000009
S	681	P681X	CCT	TAG	1	1	B.1.1	0.000018
S	681	P681P	ccT	ccC	1	1	B.1.1	0.000018
S	681	P681R	cCt	cGt	1	1	B.1.1.117	0.009709
S	681	P681R	cCt	cGt	1	1	B.1.1.121	0.002427
S	681	P681H	cCt	cAt	1	1	B.1.1.122	0.045455
S	681	P681H	cCt	cAt	1	1	B.1.1.128	0.007092
S	681	P681L	cCt	cTt	1	1	B.1.1.129	0.009174
S	681	P681H	cCt	cAt	1	1	B.1.1.145	0.037037
S	681	P681L	cCt	cTt	1	1	B.1.1.15	0.013514
S	681	P681H	cCt	cAt	1	1	B.1.1.158	0.012195
S	681	P681H	cCt	cAt	1	1	B.1.1.170	0.001247
S	681	P681H	cCt	cAt	1	1	B.1.1.175	0.076923
S	681	P681H	cCt	cAt	1	1	B.1.1.187	0.00885
S	681	P681P	ccT	ccC	1	1	B.1.1.198	0.001468
S	681	P681S	Cct	Tct	1	1	B.1.1.205	0.003717
S	681	P681Y	CCt	TAt	1	1	B.1.1.207	0.001182
S	681	P681P	ccT	ccC	1	1	B.1.1.214	0.000055
S	681	P681S	Cct	Tct	1	1	B.1.1.214	0.000055
S	681	P681H	cCt	cAt	1	1	B.1.1.214	0.000055
S	681	P681L	cCt	cTt	1	1	B.1.1.220	0.001859
S	681	P681R	cCt	cGt	1	1	B.1.1.220	0.001859
S	681	P681H	cCt	cAt	1	1	B.1.1.221	0.010101
S	681	P681P	ccT	ccC	1	1	B.1.1.222	0.000204
S	681	P681L	cCt	cTt	1	1	B.1.1.222	0.000204
S	681	P681R	cCt	cGt	1	1	B.1.1.231	0.003096
S	681	P681H	cCt	cAt	1	1	B.1.1.231	0.003096
S	681	P681S	Cct	Tct	1	1	B.1.1.232	0.001815
S	681	P681L	cCt	cTt	1	1	B.1.1.25	0.000569
S	681	P681H	cCt	cAt	1	1	B.1.1.261	0.008621
S	681	P681L	cCt	cTt	1	1	B.1.1.269	0.001353
S	681	P681R	cCt	cGt	1	1	B.1.1.269	0.001353
S	681	P681L	cCt	cTt	1	1	B.1.1.275	0.011236
S	681	P681L	cCt	cTt	1	1	B.1.1.279	0.001121
S	681	P681R	cCt	cGt	1	1	B.1.1.28	0.000311
S	681	P681H	cCt	cAt	1	1	B.1.1.280	0.003086
S	681	P681P	ccT	ccC	1	1	B.1.1.280	0.003086
S	681	P681H	cCt	cAt	1	1	B.1.1.284	0.000107
S	681	P681R	cCt	cGt	1	1	B.1.1.298	0.000862
S	681	P681R	cCt	cGt	1	1	B.1.1.301	0.001179
S	681	P681H	cCt	cAt	1	1	B.1.1.301	0.001179
S	681	P681H	cCt	cAt	1	1	B.1.1.304	0.002809
S	681	P681H	cCt	cAt	1	1	B.1.1.311	0.000358
S	681	P681L	cCt	cTt	1	1	B.1.1.311	0.000358
S	681	P681R	cCt	cGt	1	1	B.1.1.312	0.001912
S	681	P681R	cCt	cGt	1	1	B.1.1.318	0.000302
S	681	P681H	cCt	cAt	1	1	B.1.1.326	0.001761
S	681	P681H	cCt	cAt	1	1	B.1.1.328	0.016949
S	681	P681R	cCt	cGt	1	1	B.1.1.33	0.000421
S	681	P681L	cCt	cTt	1	1	B.1.1.33	0.000421
S	681	P681H	cCt	cAt	1	1	B.1.1.34	0.013158
S	681	P681H	cCt	cAt	1	1	B.1.1.343	0.020833
S	681	P681S	Cct	Tct	1	1	B.1.1.349	0.010309
S	681	P681P	ccT	ccC	1	1	B.1.1.372	0.000689
S	681	P681del	CCT	---	1	1	B.1.1.372	0.000689
S	681	P681H	cCt	cAt	1	1	B.1.1.387	0.058824
S	681	P681H	cCt	cAt	1	1	B.1.1.388	0.045455
S	681	P681del	CCT	---	1	1	B.1.1.39	0.00051
S	681	P681R	cCt	cGt	1	1	B.1.1.39	0.00051
S	681	P681L	cCt	cTt	1	1	B.1.1.397	0.002252
S	681	P681H	cCt	cAt	1	1	B.1.1.397	0.002252
S	681	P681H	cCt	cAt	1	1	B.1.1.399	0.090909
S	681	P681R	cCt	cGt	1	1	B.1.1.404	0.015873
S	681	P681H	cCt	cAt	1	1	B.1.1.407	0.041667
S	681	P681H	cCt	cAt	1	1	B.1.1.410	0.037037
S	681	P681L	cCt	cTt	1	1	B.1.1.412	0.007634
S	681	P681S	Cct	Tct	1	1	B.1.1.420	0.001006
S	681	P681H	cCt	cAt	1	1	B.1.1.422	0.045455
S	681	P681H	cCt	cAt	1	1	B.1.1.45	0.014085
S	681	P681H	cCt	cAt	1	1	B.1.1.464	0.001473
S	681	P681R	cCt	cGt	1	1	B.1.1.464	0.001473
S	681	P681P	ccT	ccG	1	1	B.1.1.486	0.001577
S	681	P681R	cCt	cGt	1	1	B.1.1.51	0.001718
S	681	P681H	cCt	cAt	1	1	B.1.1.515	0.02
S	681	P681L	cCt	cTt	1	1	B.1.1.519	0.00004
S	681	P681P	ccT	ccC	1	1	B.1.1.523	0.001563
S	681	P681L	cCt	cTt	1	1	B.1.1.526	0.003546
S	681	P681H	cCt	cAt	1	1	B.1.1.55	0.012987
S	681	P681H	cCt	cAt	1	1	B.1.1.56	0.017857
S	681	P681R	cCt	cGt	1	1	B.1.126	0.001276
S	681	P681R	cCt	cGt	1	1	B.1.131	0.008772
S	681	P681del	CCT	---	1	1	B.1.160	0.000031
S	681	P681H	cCt	cAt	1	1	B.1.160.14	0.002119
S	681	P681L	cCt	cTt	1	1	B.1.160.16	0.000929
S	681	P681S	Cct	Tct	1	1	B.1.160.17	0.001701
S	681	P681S	Cct	Tct	1	1	B.1.160.20	0.008929
S	681	P681del	CCT	---	1	1	B.1.160.33	0.004425
S	681	P681H	cCt	cAt	1	1	B.1.167	0.007812
S	681	P681H	cCt	cAt	1	1	B.1.169	0.014925
S	681	P681H	cCt	cAt	1	1	B.1.170	0.00431
S	681	P681del	CCT	---	1	1	B.1.177	0.000013
S	681	P681del2	cCT	c--	1	1	B.1.177	0.000013
S	681	P681H	cCt	cAt	1	1	B.1.177.15	0.000631
S	681	P681L	cCt	cTt	1	1	B.1.177.15	0.000631
S	681	P681H	cCt	cAt	1	1	B.1.177.21	0.000076
S	681	P681H	cCt	cAt	1	1	B.1.177.35	0.000691
S	681	P681P	ccT	ccC	1	1	B.1.177.35	0.000691
S	681	P681H	cCt	cAt	1	1	B.1.177.4	0.000211
S	681	P681H	cCt	cAt	1	1	B.1.177.47	0.012987
S	681	P681L	cCt	cTt	1	1	B.1.177.5	0.001242
S	681	P681H	cCt	cAt	1	1	B.1.177.54	0.000606
S	681	P681L	cCt	cTt	1	1	B.1.177.56	0.000668
S	681	P681P	ccT	ccC	1	1	B.1.177.6	0.000977
S	681	P681T	Cct	Act	1	1	B.1.177.7	0.000165
S	681	P681R	cCt	cGt	1	1	B.1.177.73	0.000566
S	681	P681L	cCt	cTt	1	1	B.1.177.73	0.000566
S	681	P681H	cCt	cAt	1	1	B.1.177.8	0.000752
S	681	P681H	cCt	cAt	1	1	B.1.177.82	0.000477
S	681	P681H	cCt	cAt	1	1	B.1.177.9	0.001332
S	681	P681H	cCt	cAt	1	1	B.1.179	0.003759
S	681	P681L	cCt	cTt	1	1	B.1.189	0.004292
S	681	P681H	cCt	cAt	1	1	B.1.192	0.009259
S	681	P681del	CCT	---	1	1	B.1.2	0.000009
S	681	P681H	cCt	cAt	1	1	B.1.206	0.000816
S	681	P681R	cCt	cGt	1	1	B.1.206	0.000816
S	681	P681del1	Cct	-ct	1	1	B.1.214	0.003663
S	681	P681S	Cct	Tct	1	1	B.1.214.2	0.0006
S	681	P681H	cCt	cAt	1	1	B.1.214.3	0.007143
S	681	P681P	ccT	ccC	1	1	B.1.221	0.000071
S	681	P681R	cCt	cGt	1	1	B.1.221	0.000071
S	681	P681R	cCt	cGt	1	1	B.1.222	0.001692
S	681	P681H	cCt	cAt	1	1	B.1.229	0.009709
S	681	P681H	cCt	cAt	1	1	B.1.239	0.001221
S	681	P681del	CCT	---	1	1	B.1.243	0.00007
S	681	P681P	ccT	ccC	1	1	B.1.243	0.00007
S	681	P681H	cCt	cAt	1	1	B.1.243.1	0.022222
S	681	P681del1	Cct	-ct	1	1	B.1.247	0.014925
S	681	P681S	Cct	Tct	1	1	B.1.248	0.029412
S	681	P681S	Cct	Tct	1	1	B.1.258	0.000067
S	681	P681R	cCt	cGt	1	1	B.1.258.11	0.000396
S	681	P681R	cCt	cGt	1	1	B.1.258.12	0.007874
S	681	P681H	cCt	cAt	1	1	B.1.265	0.001271
S	681	P681H	cCt	cAt	1	1	B.1.279	0.000514
S	681	P681H	cCt	cAt	1	1	B.1.301	0.005917
S	681	P681P	ccT	ccC	1	1	B.1.311	0.000275
S	681	P681del	CCT	---	1	1	B.1.311	0.000275
S	681	P681S	Cct	Tct	1	1	B.1.311	0.000275
S	681	P681S	Cct	Tct	1	1	B.1.329	0.000608
S	681	P681L	cCt	cTt	1	1	B.1.330	0.028571
S	681	P681H	cCt	cAt	1	1	B.1.349	0.000715
S	681	P681S	Cct	Tct	1	1	B.1.351	0.00003
S	681	P681T	Cct	Act	1	1	B.1.351	0.00003
S	681	P681P	ccT	ccC	1	1	B.1.351.2	0.000303
S	681	P681H	cCt	cAt	1	1	B.1.351.5	0.0006
S	681	P681R	cCt	cGt	1	1	B.1.355	0.011111
S	681	P681P	ccT	ccC	1	1	B.1.36	0.000146
S	681	P681L	cCt	cTt	1	1	B.1.36.17	0.000494
S	681	P681H	cCt	cAt	1	1	B.1.36.22	0.001208
S	681	P681H	cCt	cAt	1	1	B.1.36.27	0.000763
S	681	P681L	cCt	cTt	1	1	B.1.36.29	0.000517
S	681	P681del1	Cct	-ct	1	1	B.1.36.29	0.000517
S	681	P681H	cCt	cAt	1	1	B.1.361	0.001289
S	681	P681L	cCt	cTt	1	1	B.1.366	0.004878
S	681	P681R	cCt	cGt	1	1	B.1.366	0.004878
S	681	P681L	cCt	cTt	1	1	B.1.369	0.000285
S	681	P681L	cCt	cTt	1	1	B.1.375	0.00082
S	681	P681R	cCT	cGC	1	1	B.1.377	0.004566
S	681	P681H	cCt	cAt	1	1	B.1.389	0.001002
S	681	P681R	cCt	cGt	1	1	B.1.393	0.028571
S	681	P681H	cCt	cAt	1	1	B.1.393	0.028571
S	681	P681H	cCt	cAt	1	1	B.1.395	0.007042
S	681	P681R	cCt	cGt	1	1	B.1.396	0.000706
S	681	P681H	cCt	cAt	1	1	B.1.397	0.004854
S	681	P681R	cCt	cGt	1	1	B.1.400	0.000429
S	681	P681P	ccT	ccC	1	1	B.1.411	0.003704
S	681	P681H	cCt	cAt	1	1	B.1.417	0.028571
S	681	P681S	Cct	Tct	1	1	B.1.427	0.00005
S	681	P681S	Cct	Tct	1	1	B.1.429	0.000024
S	681	P681H	cCt	cAt	1	1	B.1.432	0.011236
S	681	P681R	cCt	cGt	1	1	B.1.432	0.011236
S	681	P681R	cCt	cGt	1	1	B.1.433	0.003195
S	681	P681H	cCt	cAt	1	1	B.1.433	0.003195
S	681	P681S	Cct	Tct	1	1	B.1.438.1	0.000107
S	681	P681S	Cct	Tct	1	1	B.1.453	0.003236
S	681	P681R	cCt	cGt	1	1	B.1.460	0.017857
S	681	P681R	cCt	cGt	1	1	B.1.485	0.014925
S	681	P681H	cCt	cAt	1	1	B.1.506	0.02381
S	681	P681L	cCt	cTt	1	1	B.1.517	0.000427
S	681	P681L	cCt	cTt	1	1	B.1.521	0.004975
S	681	P681H	cCt	cAt	1	1	B.1.521	0.004975
S	681	P681del	CCT	---	1	1	B.1.525	0.000113
S	681	P681R	cCt	cGt	1	1	B.1.525	0.000113
S	681	P681R	cCt	cGt	1	1	B.1.527	0.003704
S	681	P681H	cCt	cAt	1	1	B.1.527	0.003704
S	681	P681R	cCt	cGt	1	1	B.1.533	0.009615
S	681	P681H	cCt	cAt	1	1	B.1.538	0.008065
S	681	P681H	cCt	cAt	1	1	B.1.545	0.014493
S	681	P681H	cCt	cAt	1	1	B.1.558	0.004566
S	681	P681R	cCt	cGt	1	1	B.1.560	0.00463
S	681	P681H	cCt	cAt	1	1	B.1.565	0.00081
S	681	P681H	cCt	cAt	1	1	B.1.567	0.003333
S	681	P681H	cCt	cAt	1	1	B.1.568	0.001111
S	681	P681H	cCt	cAt	1	1	B.1.569	0.014493
S	681	P681L	cCt	cTt	1	1	B.1.574	0.002151
S	681	P681P	ccT	ccC	1	1	B.1.577	0.000687
S	681	P681R	cCt	cGt	1	1	B.1.580	0.004065
S	681	P681H	cCt	cAt	1	1	B.1.581	0.009434
S	681	P681H	cCt	cAt	1	1	B.1.582	0.000491
S	681	P681H	cCt	cAt	1	1	B.1.589	0.007576
S	681	P681H	cCt	cAt	1	1	B.1.590	0.004545
S	681	P681L	cCt	cTt	1	1	B.1.596	0.000087
S	681	P681R	cCt	cGt	1	1	B.1.599	0.00365
S	681	P681H	cCt	cAt	1	1	B.1.600	0.005848
S	681	P681P	ccT	ccC	1	1	B.1.605	0.005952
S	681	P681T	Cct	Act	1	1	B.1.606	0.006024
S	681	P681H	cCt	cAt	1	1	B.1.612	0.002653
S	681	P681L	cCt	cTt	1	1	B.1.617.1	0.000129
S	681	P681S	Cct	Tct	1	1	B.1.617.1	0.000129
S	681	P681del1	Cct	-ct	1	1	B.1.617.1	0.000129
S	681	P681F	CCt	TTt	1	1	B.1.617.2	0.000004
S	681	P681R	cCt	cGt	1	1	B.1.619.1	0.000641
S	681	P681del	CCT	---	1	1	B.1.620	0.000946
S	681	P681del	CCT	---	1	1	B.1.627	0.00202
S	681	P681L	cCt	cTt	1	1	B.1.627	0.00202
S	681	P681H	cCt	cAt	1	1	B.1.630	0.005236
S	681	P681R	cCt	cGt	1	1	B.1.631	0.003367
S	681	P681S	Cct	Tct	1	1	B.1.637	0.000073
S	681	P681del	CCT	---	1	1	B.1.638	0.052632
S	681	P681H	cCt	cAt	1	1	B.1.88.1	0.004808
S	681	P681A	Cct	Gct	1	1	B.1.88.1	0.004808
S	681	P681H	cCt	cAt	1	1	B.1.94	0.027027
S	681	P681P	ccT	ccC	1	1	B.23	0.002924
S	681	P681L	cCt	cTt	1	1	B.3	0.000831
S	681	P681H	cCt	cAt	1	1	B.35	0.007812
S	681	P681S	Cct	Tct	1	1	B.4	0.002208
S	681	P681H	cCt	cAt	1	1	B.40	0.000364
S	681	P681R	cCt	cGt	1	1	B.55	0.00295
S	681	P681L	cCt	cTt	1	1	B.55	0.00295
S	681	P681H	cCt	cAt	1	1	B.55	0.00295
S	681	P681L	cCt	cTt	1	1	B.6	0.00091
S	681	P681R	cCt	cGt	1	1	C.17	0.055556
S	681	P681H	cCt	cAt	1	1	C.26	0.007353
S	681	P681L	cCt	cTt	1	1	C.36	0.000911
S	681	P681R	cCt	cGt	1	1	C.36.3	0.000567
S	681	P681del	CCT	---	1	1	C.37	0.000116
S	681	P681H	cCt	cAt	1	1	C.4	0.01
S	681	P681T	Cct	Act	1	1	D.2	0.000075
S	681	P681S	Cct	Tct	1	1	D.2	0.000075
S	681	P681H	cCt	cAt	1	1	N.3	0.005814
S	681	P681H	cCt	cAt	1	1	P.1.10	0.000269
S	681	P681del	CCT	---	1	1	P.1.13	0.000898
S	681	P681R	cCt	cGt	1	1	P.1.15	0.000232
S	681	P681L	cCt	cTt	1	1	P.1.16	0.000374
S	681	P681T	Cct	Act	1	1	P.1.4	0.000977
S	681	P681R	cCt	cGt	1	1	P.2	0.000187
S	681	P681S	Cct	Tct	1	1	P.2	0.000187
S	681	P681L	cCt	cTt	1	1	P.2	0.000187
S	681	P681R	cCt	cGt	1	1	P.5	0.013699

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.