CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 68

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	68	I68I		syn	atA	atC	1151097	1149496	0.998609	21764-21766
S	68	I68I		syn	atA	atT	1151097	1601	0.00139085	21764-21766
S	68	I68del2		del	aTA	a--	3395	3388	0.997938	21764-21766
S	68	I68del2		del	ATa	--a	3395	6	0.0017673	21764-21766
S	68	I68del2		del	ATA	--N	3395	1	0.000294551	21764-21766
S	68	I68del		del	ATA	---	2576	2576	1	21764-21766
S	68	I68del1		del	atA	at-	1646	1527	0.927703	21764-21766
S	68	I68del1		del	Ata	-ta	1646	60	0.036452	21764-21766
S	68	I68del1		del	aTA	a-N	1646	50	0.0303767	21764-21766
S	68	I68del1		del	aTa	a-a	1646	3	0.0018226	21764-21766
S	68	I68del1		del	ATA	-NN	1646	2	0.00121507	21764-21766
S	68	I68del1		del	AtA	Nt-	1646	1	0.000607533	21764-21766
S	68	I68del1		del	ATA	-YW	1646	1	0.000607533	21764-21766
S	68	I68del1		del	AtA	-tC	1646	1	0.000607533	21764-21766
S	68	I68del1		del	aTA	aC-	1646	1	0.000607533	21764-21766
S	68	I68T		nonsyn	aTa	aCa	1080	997	0.923148	21764-21766
S	68	I68T		nonsyn	aTA	aCC	1080	79	0.0731481	21764-21766
S	68	I68T		nonsyn	aTA	aCG	1080	3	0.00277778	21764-21766
S	68	I68T		nonsyn	aTA	aCT	1080	1	0.000925926	21764-21766
S	68	I68L		nonsyn	Ata	Tta	212	164	0.773585	21764-21766
S	68	I68L		nonsyn	Ata	Cta	212	20	0.0943396	21764-21766
S	68	I68L		nonsyn	AtA	CtT	212	13	0.0613208	21764-21766
S	68	I68L		nonsyn	AtA	CtC	212	13	0.0613208	21764-21766
S	68	I68L		nonsyn	AtA	CtG	212	2	0.00943396	21764-21766
S	68	I68V		nonsyn	Ata	Gta	170	167	0.982353	21764-21766
S	68	I68V		nonsyn	AtA	GtC	170	2	0.0117647	21764-21766
S	68	I68V		nonsyn	AtA	GtT	170	1	0.00588235	21764-21766
S	68	I68N		nonsyn	aTA	aAC	160	146	0.9125	21764-21766
S	68	I68N		nonsyn	aTA	aAT	160	14	0.0875	21764-21766
S	68	I68M		nonsyn	atA	atG	67	67	1	21764-21766
S	68	I68K		nonsyn	aTa	aAa	47	45	0.957447	21764-21766
S	68	I68K		nonsyn	aTA	aAG	47	2	0.0425532	21764-21766
S	68	I68R		nonsyn	aTa	aGa	41	41	1	21764-21766
S	68	I68H		nonsyn	ATA	CAT	26	13	0.5	21764-21766
S	68	I68H		nonsyn	ATA	CAC	26	13	0.5	21764-21766
S	68	I68S		nonsyn	aTA	aGC	8	6	0.75	21764-21766
S	68	I68S		nonsyn	aTA	aGT	8	2	0.25	21764-21766
S	68	I68E		nonsyn	ATa	GAa	7	7	1	21764-21766
S	68	I68G		nonsyn	ATa	GGa	5	5	1	21764-21766
S	68	I68F		nonsyn	AtA	TtC	3	2	0.666667	21764-21766
S	68	I68F		nonsyn	AtA	TtT	3	1	0.333333	21764-21766
S	68	I68A		nonsyn	ATA	GCT	2	1	0.5	21764-21766
S	68	I68A		nonsyn	ATa	GCa	2	1	0.5	21764-21766
S	68	I68Q		nonsyn	ATa	CAa	1	1	1	21764-21766
S	68	I68D		nonsyn	ATA	GAC	1	1	1	21764-21766

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	68	I68I	atA	atC	1149496	1151097	All	0.219855
S	68	I68I	atA	atT	1601	1151097	All	0.000306
S	68	I68I	atA	atC	1077158	1078634	B.1.1.7	0.964297
S	68	I68I	atA	atT	1476	1078634	B.1.1.7	0.001321
S	68	I68I	atA	atC	10202	10207	B.1.258	0.678911
S	68	I68I	atA	atT	5	10207	B.1.258	0.000333
S	68	I68I	atA	atC	9004	9043	B.1.258.17	0.936161
S	68	I68I	atA	atT	39	9043	B.1.258.17	0.004055
S	68	I68I	atA	atC	8263	8281	B.1.525	0.935046
S	68	I68I	atA	atT	18	8281	B.1.525	0.002037
S	68	I68I	atA	atC	7720	7726	Q.1	0.97524
S	68	I68I	atA	atT	6	7726	Q.1	0.000758
S	68	I68I	atA	atC	6744	6744	Q.3	0.9781
S	68	I68I	atA	atC	5976	5976	Q.8	0.985488
S	68	I68del2	aTA	a--	3388	3395	All	0.000648
S	68	I68del2	ATa	--a	6	3395	All	0.000001
S	68	I68del2	ATA	--N	1	3395	All	0
S	68	I68del2	aTA	a--	3073	3074	B.1.1.7	0.002751
S	68	I68del2	ATA	--N	1	3074	B.1.1.7	0.000001
S	68	I68del	ATA	---	2576	2576	All	0.000493
S	68	I68I	atA	atC	2310	2310	B.1.258.11	0.915577
S	68	I68I	atA	atC	2142	2142	Q.4	0.974079
S	68	I68I	atA	atC	2114	2117	B.1.1	0.03835
S	68	I68I	atA	atT	3	2117	B.1.1	0.000054
S	68	I68del1	atA	at-	1527	1646	All	0.000292
S	68	I68del1	Ata	-ta	60	1646	All	0.000011
S	68	I68del1	aTA	a-N	50	1646	All	0.00001
S	68	I68del1	aTa	a-a	3	1646	All	0.000001
S	68	I68del1	ATA	-NN	2	1646	All	0
S	68	I68del1	aTA	aC-	1	1646	All	0
S	68	I68del1	AtA	Nt-	1	1646	All	0
S	68	I68del1	ATA	-YW	1	1646	All	0
S	68	I68del1	AtA	-tC	1	1646	All	0
S	68	I68I	atA	atC	1434	1434	Q.2	0.879755
S	68	I68del1	atA	at-	1368	1427	B.1.1.7	0.001225
S	68	I68del1	aTA	a-N	31	1427	B.1.1.7	0.000028
S	68	I68del1	Ata	-ta	23	1427	B.1.1.7	0.000021
S	68	I68del1	ATA	-NN	2	1427	B.1.1.7	0.000002
S	68	I68del1	aTA	aC-	1	1427	B.1.1.7	0.000001
S	68	I68del1	AtA	Nt-	1	1427	B.1.1.7	0.000001
S	68	I68del1	AtA	-tC	1	1427	B.1.1.7	0.000001
S	68	I68I	atA	atC	1349	1354	C.36.3	0.765173
S	68	I68I	atA	atT	5	1354	C.36.3	0.002836
S	68	I68I	atA	atC	1280	1281	B.1	0.011724
S	68	I68I	atA	atT	1	1281	B.1	0.000009
S	68	I68I	atA	atC	1171	1172	B.1.375	0.959836
S	68	I68I	atA	atT	1	1172	B.1.375	0.00082
S	68	I68del	ATA	---	1117	1117	B.1.1.7	0.001
S	68	I68T	aTa	aCa	997	1080	All	0.000191
S	68	I68T	aTA	aCC	79	1080	All	0.000015
S	68	I68T	aTA	aCG	3	1080	All	0.000001
S	68	I68T	aTA	aCT	1	1080	All	0
S	68	I68I	atA	atC	1043	1052	B.1.620	0.986755
S	68	I68I	atA	atT	9	1052	B.1.620	0.008515
S	68	I68I	atA	atC	1022	1022	B.1.1.298	0.881034
S	68	I68I	atA	atC	893	893	Q.7	0.992222
S	68	I68I	atA	atC	518	519	B.1.258.7	0.99044
S	68	I68I	atA	atT	1	519	B.1.258.7	0.001912
S	68	I68I	atA	atC	498	498	AY.44	0.003031
S	68	I68T	aTa	aCa	411	411	AY.25	0.002472
S	68	I68I	atA	atC	359	361	AY.43	0.001591
S	68	I68I	atA	atT	2	361	AY.43	0.000009
S	68	I68I	atA	atC	345	349	A.28	0.912698
S	68	I68I	atA	atT	4	349	A.28	0.010582
S	68	I68I	atA	atC	340	340	B.1.258.22	0.906667
S	68	I68I	atA	atC	332	334	B.1.625	0.781176
S	68	I68I	atA	atT	2	334	B.1.625	0.004706
S	68	I68I	atA	atC	288	291	B.1.617.2	0.001084
S	68	I68I	atA	atT	3	291	B.1.617.2	0.000011
S	68	I68del	ATA	---	289	289	C.37	0.033542
S	68	I68I	atA	atC	286	286	B.1.258.4	0.986207
S	68	I68I	atA	atC	272	272	B.1.634	0.931507
S	68	I68I	atA	atC	264	264	C.36.3.1	0.717391
S	68	I68I	atA	atC	258	259	B.1.429	0.00607
S	68	I68I	atA	atT	1	259	B.1.429	0.000024
S	68	I68I	atA	atC	231	231	AY.25	0.001389
S	68	I68I	atA	atC	224	230	AY.4	0.000349
S	68	I68I	atA	atT	6	230	AY.4	0.000009
S	68	I68L	Ata	Tta	164	212	All	0.000031
S	68	I68L	Ata	Cta	20	212	All	0.000004
S	68	I68L	AtA	CtT	13	212	All	0.000002
S	68	I68L	AtA	CtC	13	212	All	0.000002
S	68	I68L	AtA	CtG	2	212	All	0
S	68	I68I	atA	atC	199	199	B.1.258.9	0.995
S	68	I68V	Ata	Gta	167	170	All	0.000032
S	68	I68V	AtA	GtC	2	170	All	0
S	68	I68V	AtA	GtT	1	170	All	0
S	68	I68del	ATA	---	166	166	B.1.626	0.948571
S	68	I68I	atA	atC	152	165	AY.3	0.001512
S	68	I68I	atA	atT	13	165	AY.3	0.000129
S	68	I68I	atA	atC	163	163	B.1.427	0.008231
S	68	I68I	atA	atC	162	162	B.1.576	0.146872
S	68	I68N	aTA	aAC	146	160	All	0.000028
S	68	I68N	aTA	aAT	14	160	All	0.000003
S	68	I68I	atA	atC	154	154	P.1	0.002426
S	68	I68I	atA	atC	152	152	AY.103	0.000944
S	68	I68N	aTA	aAC	140	151	B.1.1.7	0.000125
S	68	I68N	aTA	aAT	11	151	B.1.1.7	0.00001
S	68	I68I	atA	atC	151	151	Q.6	1
S	68	I68del2	aTA	a--	148	148	B.1.258.11	0.05866
S	68	I68I	atA	atC	142	142	B.1.2	0.00125
S	68	I68I	atA	atC	140	140	AY.23	0.009765
S	68	I68I	atA	atC	138	138	B.1.258.19	0.978723
S	68	I68T	aTa	aCa	134	134	AY.4	0.000209
S	68	I68I	atA	atC	129	129	B.1.415.1	0.977273
S	68	I68I	atA	atC	128	128	B.1.258.21	0.992248
S	68	I68I	atA	atC	123	123	AY.36	0.01823
S	68	I68I	atA	atC	123	123	B.1.258.12	0.968504
S	68	I68I	atA	atC	113	113	B.1.258.5	0.991228
S	68	I68I	atA	atC	110	110	B.1.1.70	0.037517
S	68	I68del	ATA	---	103	103	AY.43	0.000456
S	68	I68I	atA	atC	94	94	B.1.177	0.001238
S	68	I68I	atA	atC	83	83	B.1.258.10	0.943182
S	68	I68del	ATA	---	82	82	B.1.617.2	0.000309
S	68	I68I	atA	atC	77	77	AY.26	0.00218
S	68	I68I	atA	atC	73	74	B.1.160	0.002277
S	68	I68I	atA	atT	1	74	B.1.160	0.000031
S	68	I68I	atA	atC	72	72	AY.39	0.001779
S	68	I68T	aTA	aCC	70	72	B.1.1.7	0.000063
S	68	I68T	aTA	aCT	1	72	B.1.1.7	0.000001
S	68	I68T	aTa	aCa	1	72	B.1.1.7	0.000001
S	68	I68del1	atA	at-	72	72	B.1.258.17	0.007486
S	68	I68I	atA	atC	68	68	AY.42	0.002736
S	68	I68I	atA	atC	68	68	P.1.10.1	0.552846
S	68	I68M	atA	atG	67	67	All	0.000013
S	68	I68del	ATA	---	64	64	AY.4	0.0001
S	68	I68I	atA	atC	63	63	B.1.1.205	0.234201
S	68	I68I	atA	atC	63	63	C.37	0.007312
S	68	I68I	atA	atC	62	62	B.1.596	0.005403
S	68	I68I	atA	atC	60	60	AY.9.2	0.002204
S	68	I68del2	aTA	a--	60	60	B.1.258	0.003993
S	68	I68I	atA	atC	60	60	B.1.258.20	0.952381
S	68	I68I	atA	atC	59	59	Q.5	1
S	68	I68I	atA	atC	58	58	R.1	0.005221
S	68	I68I	atA	atC	56	56	B.1.609	0.026846
S	68	I68del	ATA	---	54	54	AY.44	0.000329
S	68	I68I	atA	atC	53	53	B.1.617.1	0.006835
S	68	I68I	atA	atC	50	50	B.1.258.6	0.980392
S	68	I68I	atA	atC	49	49	AY.109	0.036243
S	68	I68I	atA	atC	46	48	AY.102	0.00122
S	68	I68I	atA	atT	2	48	AY.102	0.000053
S	68	I68del	ATA	---	48	48	AY.25	0.000289
S	68	I68K	aTa	aAa	45	47	All	0.000009
S	68	I68K	aTA	aAG	2	47	All	0
S	68	I68I	atA	atC	47	47	B.1.526	0.001105
S	68	I68del	ATA	---	45	45	B.1	0.000412
S	68	I68I	atA	atC	45	45	B.1.221	0.003196
S	68	I68I	atA	atC	45	45	XA	1
S	68	I68L	Ata	Tta	33	43	AY.4	0.000051
S	68	I68L	Ata	Cta	10	43	AY.4	0.000016
S	68	I68T	aTa	aCa	42	43	AY.44	0.000256
S	68	I68T	aTA	aCG	1	43	AY.44	0.000006
S	68	I68I	atA	atC	43	43	AY.75	0.002409
S	68	I68R	aTa	aGa	41	41	All	0.000008
S	68	I68I	atA	atC	41	41	B.1.258.23	0.97619
S	68	I68I	atA	atC	40	40	B	0.005112
S	68	I68del	ATA	---	40	40	B.1.1	0.000726
S	68	I68I	atA	atC	40	40	B.1.639	0.869565
S	68	I68V	Ata	Gta	35	36	AY.3	0.000348
S	68	I68V	AtA	GtC	1	36	AY.3	0.00001
S	68	I68I	atA	atC	36	36	AY.61	0.003772
S	68	I68T	aTa	aCa	36	36	P.1	0.000567
S	68	I68T	aTa	aCa	35	35	AY.103	0.000217
S	68	I68I	atA	atC	35	35	B.1.1.409	0.09915
S	68	I68I	atA	atC	35	35	B.1.637	0.002558
S	68	I68I	atA	atC	35	35	P.1.1	0.011118
S	68	I68L	Ata	Tta	34	34	B.1.588	0.030937
S	68	I68del	ATA	---	33	33	AY.103	0.000205
S	68	I68del	ATA	---	33	33	AY.9	0.002231
S	68	I68del	ATA	---	33	33	B.1.258.22	0.088
S	68	I68I	atA	atC	32	32	AY.46	0.003331
S	68	I68I	atA	atC	32	32	AY.53	0.009201
S	68	I68I	atA	atC	31	31	AY.75.1	0.00559
S	68	I68I	atA	atC	31	31	C.36	0.028233
S	68	I68I	atA	atC	28	29	AY.100	0.001288
S	68	I68I	atA	atT	1	29	AY.100	0.000046
S	68	I68V	Ata	Gta	29	29	B.1.617.2	0.000109
S	68	I68I	atA	atC	28	28	AY.47	0.000871
S	68	I68I	atA	atC	28	28	AY.5	0.000578
S	68	I68I	atA	atC	28	28	AY.99.2	0.00258
S	68	I68I	atA	atC	28	28	B.1.258.24	0.301075
S	68	I68I	atA	atC	27	27	B.1.1.519	0.001072
S	68	I68H	ATA	CAT	13	26	All	0.000002
S	68	I68H	ATA	CAC	13	26	All	0.000002
S	68	I68I	atA	atC	26	26	AY.118	0.001629
S	68	I68I	atA	atC	24	24	AY.65	0.012793
S	68	I68I	atA	atC	24	24	AY.98	0.001896
S	68	I68I	atA	atC	24	24	AY.98.1	0.001162
S	68	I68T	aTa	aCa	24	24	B.1.2	0.000211
S	68	I68V	Ata	Gta	23	23	AY.116	0.006596
S	68	I68I	atA	atC	23	23	B.1.1.161	0.081272
S	68	I68L	AtA	CtT	11	23	B.1.1.7	0.00001
S	68	I68L	AtA	CtC	11	23	B.1.1.7	0.00001
S	68	I68L	Ata	Tta	1	23	B.1.1.7	0.000001
S	68	I68I	atA	atC	22	22	AY.117	0.001859
S	68	I68H	ATA	CAT	11	22	B.1.1.7	0.00001
S	68	I68H	ATA	CAC	11	22	B.1.1.7	0.00001
S	68	I68del1	atA	at-	17	22	B.1.525	0.001924
S	68	I68del1	Ata	-ta	4	22	B.1.525	0.000453
S	68	I68del1	aTA	a-N	1	22	B.1.525	0.000113
S	68	I68T	aTa	aCa	21	21	AY.46.6	0.001516
S	68	I68T	aTa	aCa	21	21	B.1.617.2	0.000079
S	68	I68I	atA	atC	21	21	B.1.621	0.001859
S	68	I68del	ATA	---	20	20	AY.3	0.000199
S	68	I68I	atA	atC	20	20	AY.4.5	0.00215
S	68	I68I	atA	atC	18	18	B.1.1.222	0.003672
S	68	I68I	atA	atC	18	18	B.1.351	0.000535
S	68	I68T	aTa	aCa	18	18	B.1.631	0.060606
S	68	I68del	ATA	---	17	17	AY.102	0.000451
S	68	I68I	atA	atC	16	16	A	0.006192
S	68	I68I	atA	atC	16	16	AY.92	0.004596
S	68	I68del2	aTA	a--	16	16	B.1.1	0.00029
S	68	I68I	atA	atC	16	16	B.1.1.37	0.003086
S	68	I68I	atA	atC	16	16	B.1.1.507	0.13913
S	68	I68del	ATA	---	16	16	B.1.525	0.001811
S	68	I68I	atA	atC	15	15	AY.16.1	0.007049
S	68	I68I	atA	atC	15	15	AY.70	0.003128
S	68	I68I	atA	atC	15	15	B.1.1.25	0.008528
S	68	I68T	aTa	aCa	15	15	B.1.1.301	0.017689
S	68	I68I	atA	atC	14	14	AY.34	0.001358
S	68	I68I	atA	atC	14	14	AY.52	0.011401
S	68	I68T	aTa	aCa	14	14	B.1	0.000128
S	68	I68L	Ata	Tta	14	14	B.1	0.000128
S	68	I68del1	atA	at-	5	14	B.1	0.000046
S	68	I68del1	Ata	-ta	5	14	B.1	0.000046
S	68	I68del1	aTA	a-N	4	14	B.1	0.000037
S	68	I68I	atA	atC	14	14	B.1.1.220	0.026022
S	68	I68del1	atA	at-	13	14	B.1.258	0.000865
S	68	I68del1	aTA	a-N	1	14	B.1.258	0.000067
S	68	I68I	atA	atC	14	14	B.1.258.14	0.013725
S	68	I68I	atA	atC	13	13	AY.30	0.005144
S	68	I68I	atA	atC	13	13	AY.35	0.00303
S	68	I68I	atA	atC	12	13	AY.54	0.001144
S	68	I68I	atA	atT	1	13	AY.54	0.000095
S	68	I68del1	atA	at-	7	13	B.1.1	0.000127
S	68	I68del1	Ata	-ta	3	13	B.1.1	0.000054
S	68	I68del1	aTA	a-N	3	13	B.1.1	0.000054
S	68	I68I	atA	atC	13	13	B.1.1.312	0.024857
S	68	I68del	ATA	---	13	13	B.1.177	0.000171
S	68	I68del	ATA	---	13	13	B.1.258	0.000865
S	68	I68T	aTa	aCa	13	13	B.1.621	0.001151
S	68	I68I	atA	atC	13	13	P.1.12	0.006292
S	68	I68I	atA	atC	12	12	AY.20	0.000466
S	68	I68del	ATA	---	12	12	AY.34.1	0.006119
S	68	I68M	atA	atG	12	12	AY.4	0.000019
S	68	I68I	atA	atC	12	12	AY.45	0.00146
S	68	I68I	atA	atC	12	12	AY.46.6	0.000866
S	68	I68I	atA	atC	12	12	AY.91	0.008766
S	68	I68L	Ata	Tta	12	12	B.1.621	0.001062
S	68	I68del	ATA	---	11	11	AY.5	0.000227
S	68	I68del	ATA	---	11	11	AY.98.1	0.000533
S	68	I68I	atA	atC	11	11	B.1.1.294	0.013924
S	68	I68del	ATA	---	11	11	B.1.2	0.000097
S	68	I68I	atA	atC	11	11	B.1.411	0.040741
S	68	I68del	ATA	---	10	10	AY.26	0.000283
S	68	I68V	Ata	Gta	10	10	AY.43	0.000044
S	68	I68T	aTa	aCa	9	10	AY.43	0.00004
S	68	I68T	aTA	aCG	1	10	AY.43	0.000004
S	68	I68I	atA	atC	10	10	AY.68	0.002737
S	68	I68I	atA	atC	10	10	AY.9	0.000676
S	68	I68del	ATA	---	10	10	AY.9.2	0.000367
S	68	I68I	atA	atC	10	10	B.1.1.528	0.048077
S	68	I68I	atA	atC	10	10	B.1.258.18	1
S	68	I68I	atA	atC	9	9	AY.16	0.003417
S	68	I68I	atA	atC	8	9	AY.3.1	0.000682
S	68	I68I	atA	atT	1	9	AY.3.1	0.000085
S	68	I68R	aTa	aGa	9	9	AY.4	0.000014
S	68	I68del	ATA	---	9	9	AY.4.5	0.000967
S	68	I68I	atA	atC	9	9	AY.40	0.008679
S	68	I68del2	aTA	a--	9	9	B.1.1.298	0.007759
S	68	I68L	Ata	Tta	9	9	B.1.177.77	0.006536
S	68	I68I	atA	atC	9	9	B.1.388	0.818182
S	68	I68del2	aTA	a--	9	9	Q.1	0.001137
S	68	I68S	aTA	aGC	6	8	All	0.000001
S	68	I68S	aTA	aGT	2	8	All	0
S	68	I68T	aTa	aCa	8	8	AY.4.2	0.000174
S	68	I68V	Ata	Gta	8	8	AY.47	0.000249
S	68	I68del	ATA	---	8	8	AY.47	0.000249
S	68	I68I	atA	atC	8	8	AY.9.1	0.00067
S	68	I68del	ATA	---	8	8	AY.98	0.000632
S	68	I68I	atA	atC	8	8	B.1.1.50	0.005431
S	68	I68del	ATA	---	8	8	B.1.177.86	0.001468
S	68	I68I	atA	atC	8	8	B.1.311	0.002197
S	68	I68I	atA	atC	8	8	B.1.367	0.006339
S	68	I68T	aTa	aCa	8	8	B.1.429	0.000188
S	68	I68del	ATA	---	8	8	B.1.429	0.000188
S	68	I68E	ATa	GAa	7	7	All	0.000001
S	68	I68I	atA	atC	7	7	AY.1	0.00277
S	68	I68del	ATA	---	7	7	AY.101	0.003433
S	68	I68T	aTa	aCa	7	7	AY.102	0.000186
S	68	I68I	atA	atC	7	7	AY.119	0.000247
S	68	I68T	aTa	aCa	7	7	AY.26	0.000198
S	68	I68T	aTa	aCa	7	7	AY.3	0.00007
S	68	I68I	atA	atC	7	7	AY.34.1	0.00357
S	68	I68I	atA	atC	7	7	AY.39.1	0.000277
S	68	I68V	Ata	Gta	7	7	AY.4	0.000011
S	68	I68del	ATA	---	7	7	AY.42	0.000282
S	68	I68T	aTa	aCa	7	7	AY.47	0.000218
S	68	I68I	atA	atC	7	7	AY.74	0.00081
S	68	I68I	atA	atC	7	7	B.1.1.28	0.002179
S	68	I68I	atA	atC	7	7	B.1.243	0.000487
S	68	I68I	atA	atC	7	7	B.1.393	0.2
S	68	I68L	Ata	Tta	7	7	B.1.617.2	0.000026
S	68	I68I	atA	atC	7	7	B.1.623	0.003755
S	68	I68I	atA	atC	7	7	B.4.1	0.132075
S	68	I68L	Ata	Tta	7	7	P.1	0.00011
S	68	I68del	ATA	---	7	7	P.1	0.00011
S	68	I68del	ATA	---	7	7	Q.8	0.001154
S	68	I68del	ATA	---	6	6		0.333333
S	68	I68del	ATA	---	6	6	AY.100	0.000276
S	68	I68I	atA	atC	6	6	AY.106	0.002009
S	68	I68I	atA	atC	6	6	AY.113	0.000854
S	68	I68del	ATA	---	6	6	AY.121	0.000812
S	68	I68T	aTA	aCC	4	6	AY.23	0.000279
S	68	I68T	aTa	aCa	2	6	AY.23	0.000139
S	68	I68I	atA	atC	6	6	AY.33	0.000401
S	68	I68L	Ata	Tta	6	6	AY.39	0.000148
S	68	I68del	ATA	---	6	6	AY.39	0.000148
S	68	I68K	aTa	aAa	5	6	AY.4	0.000008
S	68	I68del1	Ata	-ta	3	6	AY.4	0.000005
S	68	I68del1	atA	at-	2	6	AY.4	0.000003
S	68	I68K	aTA	aAG	1	6	AY.4	0.000002
S	68	I68del1	aTA	a-N	1	6	AY.4	0.000002
S	68	I68del2	aTA	a--	6	6	AY.43	0.000027
S	68	I68del1	atA	at-	3	6	AY.43	0.000013
S	68	I68del1	aTA	a-N	2	6	AY.43	0.000009
S	68	I68del1	aTa	a-a	1	6	AY.43	0.000004
S	68	I68del	ATA	---	6	6	AY.45	0.00073
S	68	I68I	atA	atC	6	6	AY.85	0.002563
S	68	I68I	atA	atC	6	6	AY.99	0.006296
S	68	I68del	ATA	---	6	6	B	0.000767
S	68	I68del2	aTA	a--	6	6	B.1	0.000055
S	68	I68I	atA	atC	6	6	B.1.1.1	0.00196
S	68	I68I	atA	atC	6	6	B.1.1.141	0.012072
S	68	I68I	atA	atC	6	6	B.1.1.317	0.00247
S	68	I68I	atA	atC	6	6	B.1.1.523	0.009375
S	68	I68S	aTA	aGC	6	6	B.1.1.7	0.000005
S	68	I68del	ATA	---	6	6	B.1.160	0.000187
S	68	I68T	aTa	aCa	6	6	B.1.177	0.000079
S	68	I68I	atA	atC	6	6	B.1.177.31	0.068966
S	68	I68M	atA	atG	6	6	B.1.258	0.000399
S	68	I68del	ATA	---	6	6	B.1.258.17	0.000624
S	68	I68I	atA	atC	6	6	B.1.564	0.002555
S	68	I68V	Ata	Gta	6	6	P.1	0.000095
S	68	I68I	atA	atC	6	6	P.1.15	0.001394
S	68	I68I	atA	atC	6	6	P.1.16	0.002245
S	68	I68G	ATa	GGa	5	5	All	0.000001
S	68	I68del	ATA	---	5	5	AU.2	0.012107
S	68	I68del	ATA	---	5	5	AY.117	0.000423
S	68	I68del	ATA	---	5	5	AY.119	0.000177
S	68	I68I	atA	atC	5	5	AY.14	0.00044
S	68	I68T	aTa	aCa	5	5	AY.20	0.000194
S	68	I68del	ATA	---	5	5	AY.33	0.000334
S	68	I68I	atA	atC	5	5	AY.39.2	0.007704
S	68	I68del2	aTA	a--	4	5	AY.4	0.000006
S	68	I68del2	ATa	--a	1	5	AY.4	0.000002
S	68	I68del	ATA	---	5	5	AY.46	0.00052
S	68	I68T	aTa	aCa	5	5	AY.5	0.000103
S	68	I68T	aTa	aCa	5	5	AY.5.4	0.001384
S	68	I68I	atA	atC	5	5	AY.56	0.008026
S	68	I68I	atA	atC	5	5	AY.59	0.002648
S	68	I68I	atA	atC	5	5	AY.69	0.000933
S	68	I68I	atA	atC	5	5	AY.71	0.002375
S	68	I68I	atA	atC	5	5	AY.94	0.002213
S	68	I68I	atA	atC	5	5	B.1.1.318	0.001509
S	68	I68T	aTa	aCa	5	5	B.1.1.50	0.003394
S	68	I68I	atA	atC	5	5	B.1.139	0.003666
S	68	I68I	atA	atC	5	5	B.1.157	0.014925
S	68	I68M	atA	atG	5	5	B.1.2	0.000044
S	68	I68I	atA	atC	5	5	B.1.214	0.018315
S	68	I68I	atA	atC	5	5	B.1.36	0.00073
S	68	I68del	ATA	---	5	5	B.1.427	0.000252
S	68	I68T	aTa	aCa	5	5	B.1.499	0.005252
S	68	I68I	atA	atC	5	5	B.1.554	0.022026
S	68	I68I	atA	atC	5	5	B.1.575	0.001517
S	68	I68I	atA	atC	5	5	B.1.580	0.020325
S	68	I68I	atA	atC	5	5	B.1.599	0.018248
S	68	I68del2	aTA	a--	5	5	B.1.617.2	0.000019
S	68	I68del1	atA	at-	3	5	B.1.617.2	0.000011
S	68	I68del1	Ata	-ta	1	5	B.1.617.2	0.000004
S	68	I68del1	aTA	a-N	1	5	B.1.617.2	0.000004
S	68	I68I	atA	atC	5	5	B.1.628	0.001762
S	68	I68K	aTa	aAa	5	5	P.1	0.000079
S	68	I68I	atA	atC	5	5	P.1.7	0.001596
S	68	I68del	ATA	---	5	5	Q.1	0.000632
S	68	I68I	atA	atC	4	4	A.2.5	0.001996
S	68	I68I	atA	atC	4	4	A.25	0.072727
S	68	I68V	Ata	Gta	4	4	AY.102	0.000106
S	68	I68I	atA	atC	4	4	AY.105	0.002572
S	68	I68L	Ata	Tta	4	4	AY.106	0.00134
S	68	I68I	atA	atC	4	4	AY.110	0.000451
S	68	I68del	ATA	---	4	4	AY.118	0.000251
S	68	I68T	aTa	aCa	4	4	AY.120.2.1	0.001993
S	68	I68I	atA	atC	4	4	AY.13	0.000644
S	68	I68V	Ata	Gta	4	4	AY.2	0.001425
S	68	I68del	ATA	---	4	4	AY.20	0.000155
S	68	I68I	atA	atC	4	4	AY.21	0.00759
S	68	I68I	atA	atC	4	4	AY.24	0.001724
S	68	I68I	atA	atC	4	4	AY.29.1	0.000882
S	68	I68M	atA	atG	4	4	AY.4.2	0.000087
S	68	I68L	Ata	Tta	4	4	AY.43	0.000018
S	68	I68I	atA	atC	4	4	AY.5.3	0.00135
S	68	I68I	atA	atC	4	4	AY.5.4	0.001107
S	68	I68I	atA	atC	4	4	AY.55	0.00367
S	68	I68del	ATA	---	4	4	AY.61	0.000419
S	68	I68T	aTa	aCa	4	4	AY.61	0.000419
S	68	I68del	ATA	---	4	4	AY.75	0.000224
S	68	I68del	ATA	---	4	4	AY.85	0.001709
S	68	I68del	ATA	---	4	4	AY.9.1	0.000335
S	68	I68I	atA	atC	4	4	AY.95	0.003044
S	68	I68del	ATA	---	4	4	AY.99.2	0.000369
S	68	I68T	aTa	aCa	4	4	B.1.1	0.000073
S	68	I68I	atA	atC	4	4	B.1.1.10	0.004459
S	68	I68T	aTa	aCa	4	4	B.1.1.39	0.002039
S	68	I68I	atA	atC	4	4	B.1.1.420	0.004024
S	68	I68I	atA	atC	4	4	B.1.1.448	0.00813
S	68	I68M	atA	atG	4	4	B.1.1.7	0.000004
S	68	I68del	ATA	---	4	4	B.1.108	0.023256
S	68	I68del	ATA	---	4	4	B.1.177.73	0.002265
S	68	I68T	aTa	aCa	4	4	B.1.177.86	0.000734
S	68	I68del	ATA	---	4	4	B.1.221	0.000284
S	68	I68del2	aTA	a--	4	4	B.1.258.17	0.000416
S	68	I68del2	aTA	a--	4	4	B.1.375	0.003279
S	68	I68del1	atA	at-	3	4	B.1.429	0.000071
S	68	I68del1	aTA	a-N	1	4	B.1.429	0.000024
S	68	I68I	atA	atC	4	4	B.1.466.2	0.001565
S	68	I68I	atA	atC	4	4	B.1.619	0.003484
S	68	I68I	atA	atC	4	4	B.1.621.1	0.002023
S	68	I68del1	atA	at-	4	4	B.1.625	0.009412
S	68	I68H	ATA	CAT	2	4	B.1.625	0.004706
S	68	I68L	AtA	CtC	2	4	B.1.625	0.004706
S	68	I68N	aTA	aAC	2	4	B.1.625	0.004706
S	68	I68N	aTA	aAT	2	4	B.1.625	0.004706
S	68	I68L	AtA	CtT	2	4	B.1.625	0.004706
S	68	I68H	ATA	CAC	2	4	B.1.625	0.004706
S	68	I68del	ATA	---	4	4	P.1.12	0.001936
S	68	I68I	atA	atC	3	3	AD.2	0.000657
S	68	I68F	AtA	TtC	2	3	All	0
S	68	I68F	AtA	TtT	1	3	All	0
S	68	I68M	atA	atG	3	3	AY.103	0.000019
S	68	I68del	ATA	---	3	3	AY.113	0.000427
S	68	I68L	Ata	Cta	2	3	AY.119	0.000071
S	68	I68L	Ata	Tta	1	3	AY.119	0.000035
S	68	I68del	ATA	---	3	3	AY.12	0.000948
S	68	I68I	atA	atC	3	3	AY.120	0.000112
S	68	I68I	atA	atC	3	3	AY.120.2.1	0.001495
S	68	I68del1	atA	at-	3	3	AY.23	0.000209
S	68	I68del2	aTA	a--	3	3	AY.25	0.000018
S	68	I68I	atA	atC	3	3	AY.29	0.000047
S	68	I68T	aTa	aCa	3	3	AY.3.1	0.000256
S	68	I68del	ATA	---	3	3	AY.3.1	0.000256
S	68	I68I	atA	atC	3	3	AY.37	0.000948
S	68	I68del	ATA	---	3	3	AY.38	0.001498
S	68	I68T	aTa	aCa	3	3	AY.39	0.000074
S	68	I68del	ATA	---	3	3	AY.39.1	0.000119
S	68	I68I	atA	atC	3	3	AY.4.2	0.000065
S	68	I68I	atA	atC	3	3	AY.4.2.1	0.000447
S	68	I68del1	Ata	-ta	2	3	AY.42	0.00008
S	68	I68del1	atA	at-	1	3	AY.42	0.00004
S	68	I68I	atA	atC	3	3	AY.46.5	0.000595
S	68	I68del1	atA	at-	2	3	AY.5	0.000041
S	68	I68del1	Ata	-ta	1	3	AY.5	0.000021
S	68	I68I	atA	atC	3	3	AY.6	0.000123
S	68	I68del	ATA	---	3	3	AY.6	0.000123
S	68	I68I	atA	atC	3	3	AY.7.2	0.001678
S	68	I68del	ATA	---	3	3	AY.71	0.001425
S	68	I68del	ATA	---	3	3	AY.75.1	0.000541
S	68	I68T	aTa	aCa	3	3	AY.93	0.000819
S	68	I68I	atA	atC	3	3	AY.97	0.005102
S	68	I68I	atA	atC	3	3	B.1.1.153	0.003286
S	68	I68T	aTa	aCa	3	3	B.1.1.25	0.001706
S	68	I68V	Ata	Gta	2	3	B.1.1.33	0.000842
S	68	I68V	AtA	GtC	1	3	B.1.1.33	0.000421
S	68	I68I	atA	atC	3	3	B.1.1.372	0.002066
S	68	I68I	atA	atC	3	3	B.1.1.434	0.001046
S	68	I68I	atA	atC	3	3	B.1.1.525	0.016393
S	68	I68K	aTa	aAa	3	3	B.1.1.7	0.000003
S	68	I68T	aTa	aCa	3	3	B.1.177.79	0.007026
S	68	I68K	aTa	aAa	3	3	B.1.2	0.000026
S	68	I68V	Ata	Gta	3	3	B.1.2	0.000026
S	68	I68I	atA	atC	3	3	B.1.234	0.000396
S	68	I68I	atA	atC	3	3	B.1.237	0.014925
S	68	I68T	aTa	aCa	3	3	B.1.240	0.000647
S	68	I68I	atA	atC	3	3	B.1.258.15	0.056604
S	68	I68del2	aTA	a--	3	3	B.1.258.19	0.021277
S	68	I68del2	aTA	a--	3	3	B.1.258.4	0.010345
S	68	I68L	Ata	Tta	3	3	B.1.351	0.000089
S	68	I68T	aTa	aCa	3	3	B.1.36.29	0.001552
S	68	I68I	atA	atC	3	3	B.1.36.38	0.004926
S	68	I68I	atA	atC	3	3	B.1.36.8	0.003
S	68	I68I	atA	atC	3	3	B.1.369	0.000856
S	68	I68I	atA	atC	3	3	B.1.470	0.004213
S	68	I68T	aTA	aCC	3	3	B.1.525	0.000339
S	68	I68T	aTa	aCa	3	3	B.1.526	0.000071
S	68	I68I	atA	atC	3	3	B.1.533	0.028846
S	68	I68I	atA	atC	3	3	B.1.565	0.002431
S	68	I68L	Ata	Tta	3	3	B.1.596	0.000261
S	68	I68del	ATA	---	3	3	B.1.596	0.000261
S	68	I68I	atA	atC	3	3	B.1.600	0.017544
S	68	I68T	aTa	aCa	3	3	B.1.610	0.010638
S	68	I68K	aTa	aAa	3	3	B.1.617.2	0.000011
S	68	I68R	aTa	aGa	3	3	B.1.617.2	0.000011
S	68	I68I	atA	atC	3	3	B.1.633	0.125
S	68	I68I	atA	atC	3	3	B.1.636	0.020134
S	68	I68I	atA	atC	3	3	B.52	0.030303
S	68	I68E	ATa	GAa	3	3	P.1	0.000047
S	68	I68I	atA	atC	3	3	P.1.10	0.000808
S	68	I68T	aTa	aCa	3	3	P.1.15	0.000697
S	68	I68I	atA	atC	3	3	P.1.6	0.005837
S	68	I68del1	atA	at-	3	3	Q.3	0.000435
S	68	I68del2	aTA	a--	2	2		0.111111
S	68	I68del1	Ata	-ta	1	2		0.055556
S	68	I68del1	ATA	-YW	1	2		0.055556
S	68	I68del	ATA	---	2	2	A	0.000774
S	68	I68A	ATa	GCa	1	2	All	0
S	68	I68A	ATA	GCT	1	2	All	0
S	68	I68I	atA	atC	2	2	AY.10	0.00106
S	68	I68T	aTa	aCa	2	2	AY.100	0.000092
S	68	I68M	atA	atG	2	2	AY.102	0.000053
S	68	I68del1	aTa	a-a	1	2	AY.102	0.000027
S	68	I68del1	Ata	-ta	1	2	AY.102	0.000027
S	68	I68I	atA	atC	2	2	AY.107	0.000932
S	68	I68del	ATA	---	2	2	AY.108	0.002205
S	68	I68del2	aTA	a--	2	2	AY.109	0.001479
S	68	I68del	ATA	---	2	2	AY.111	0.000366
S	68	I68I	atA	atC	2	2	AY.114	0.000462
S	68	I68T	aTa	aCa	2	2	AY.119	0.000071
S	68	I68V	Ata	Gta	2	2	AY.119	0.000071
S	68	I68I	atA	atC	2	2	AY.12	0.000632
S	68	I68T	aTa	aCa	2	2	AY.120	0.000074
S	68	I68del1	Ata	-ta	2	2	AY.120	0.000074
S	68	I68I	atA	atC	2	2	AY.121	0.000271
S	68	I68I	atA	atC	2	2	AY.19	0.002281
S	68	I68T	aTa	aCa	2	2	AY.23.1	0.000835
S	68	I68V	Ata	Gta	2	2	AY.25	0.000012
S	68	I68L	Ata	Tta	2	2	AY.25	0.000012
S	68	I68del1	atA	at-	1	2	AY.25	0.000006
S	68	I68del1	Ata	-ta	1	2	AY.25	0.000006
S	68	I68del1	atA	at-	1	2	AY.26	0.000028
S	68	I68del1	aTA	a-N	1	2	AY.26	0.000028
S	68	I68M	atA	atG	2	2	AY.3	0.00002
S	68	I68del	ATA	---	2	2	AY.30	0.000791
S	68	I68I	atA	atC	2	2	AY.32	0.001065
S	68	I68I	atA	atC	2	2	AY.38	0.000999
S	68	I68del2	aTA	a--	2	2	AY.39	0.000049
S	68	I68M	atA	atG	2	2	AY.39	0.000049
S	68	I68T	aTa	aCa	2	2	AY.4.2.1	0.000298
S	68	I68T	aTa	aCa	2	2	AY.42	0.00008
S	68	I68M	atA	atG	2	2	AY.43	0.000009
S	68	I68R	aTa	aGa	2	2	AY.43	0.000009
S	68	I68del1	Ata	-ta	2	2	AY.44	0.000012
S	68	I68L	Ata	Tta	2	2	AY.44	0.000012
S	68	I68K	aTa	aAa	2	2	AY.44	0.000012
S	68	I68M	atA	atG	2	2	AY.44	0.000012
S	68	I68V	Ata	Gta	2	2	AY.45	0.000243
S	68	I68K	aTa	aAa	2	2	AY.46.6	0.000144
S	68	I68M	atA	atG	2	2	AY.46.6	0.000144
S	68	I68del	ATA	---	2	2	AY.52	0.001629
S	68	I68del	ATA	---	2	2	AY.54	0.000191
S	68	I68R	aTa	aGa	2	2	AY.59	0.001059
S	68	I68I	atA	atC	2	2	AY.62	0.000871
S	68	I68I	atA	atC	2	2	AY.67	0.000929
S	68	I68del	ATA	---	2	2	AY.69	0.000373
S	68	I68del	ATA	---	2	2	AY.7.2	0.001119
S	68	I68I	atA	atC	2	2	AY.81	0.003984
S	68	I68I	atA	atC	2	2	AY.88	0.001768
S	68	I68R	aTa	aGa	2	2	AY.9.1	0.000167
S	68	I68M	atA	atG	2	2	AY.9.2	0.000073
S	68	I68V	Ata	Gta	2	2	AY.91	0.001461
S	68	I68del	ATA	---	2	2	AY.94	0.000885
S	68	I68V	Ata	Gta	2	2	AY.94	0.000885
S	68	I68T	aTa	aCa	2	2	AY.98	0.000158
S	68	I68L	Ata	Cta	1	2	AY.98.1	0.000048
S	68	I68L	Ata	Tta	1	2	AY.98.1	0.000048
S	68	I68L	Ata	Tta	1	2	B.1.1	0.000018
S	68	I68L	AtA	CtG	1	2	B.1.1	0.000018
S	68	I68I	atA	atC	2	2	B.1.1.166	0.066667
S	68	I68I	atA	atC	2	2	B.1.1.216	0.001781
S	68	I68I	atA	atC	2	2	B.1.1.241	0.004141
S	68	I68M	atA	atG	2	2	B.1.1.28	0.000622
S	68	I68I	atA	atC	2	2	B.1.1.291	0.001485
S	68	I68I	atA	atC	2	2	B.1.1.299	0.02439
S	68	I68I	atA	atC	2	2	B.1.1.306	0.000877
S	68	I68I	atA	atC	2	2	B.1.1.315	0.016949
S	68	I68T	aTa	aCa	2	2	B.1.1.316	0.00185
S	68	I68K	aTa	aAa	2	2	B.1.1.33	0.000842
S	68	I68T	aTa	aCa	2	2	B.1.1.336	0.033333
S	68	I68I	atA	atC	2	2	B.1.1.34	0.026316
S	68	I68I	atA	atC	2	2	B.1.1.370	0.025316
S	68	I68I	atA	atC	2	2	B.1.1.39	0.001019
S	68	I68T	aTa	aCa	2	2	B.1.1.513	0.024691
S	68	I68V	Ata	Gta	2	2	B.1.1.519	0.000079
S	68	I68I	atA	atC	2	2	B.1.1.524	0.041667
S	68	I68I	atA	atC	2	2	B.1.1.83	0.00542
S	68	I68I	atA	atC	2	2	B.1.111	0.00235
S	68	I68T	aTa	aCa	2	2	B.1.160	0.000062
S	68	I68I	atA	atC	2	2	B.1.170	0.008621
S	68	I68del2	aTA	a--	1	2	B.1.177	0.000013
S	68	I68del2	ATa	--a	1	2	B.1.177	0.000013
S	68	I68I	atA	atC	2	2	B.1.177.44	0.001038
S	68	I68I	atA	atC	2	2	B.1.177.6	0.001953
S	68	I68del	ATA	---	2	2	B.1.177.81	0.000379
S	68	I68I	atA	atC	2	2	B.1.177.86	0.000367
S	68	I68del	ATA	---	2	2	B.1.179	0.007519
S	68	I68del2	aTA	a--	2	2	B.1.2	0.000018
S	68	I68del1	aTA	a-N	1	2	B.1.2	0.000009
S	68	I68del1	Ata	-ta	1	2	B.1.2	0.000009
S	68	I68I	atA	atC	2	2	B.1.214.2	0.001199
S	68	I68I	atA	atC	2	2	B.1.22	0.002635
S	68	I68I	atA	atC	2	2	B.1.239	0.002442
S	68	I68T	aTA	aCC	2	2	B.1.258	0.000133
S	68	I68I	atA	atC	2	2	B.1.336	0.004878
S	68	I68T	aTa	aCa	2	2	B.1.351	0.000059
S	68	I68del	ATA	---	2	2	B.1.351	0.000059
S	68	I68del1	atA	at-	2	2	B.1.375	0.001639
S	68	I68I	atA	atC	2	2	B.1.380	0.013245
S	68	I68M	atA	atG	2	2	B.1.429	0.000047
S	68	I68K	aTa	aAa	2	2	B.1.429	0.000047
S	68	I68V	Ata	Gta	2	2	B.1.429	0.000047
S	68	I68I	atA	atC	2	2	B.1.468	0.011429
S	68	I68L	Ata	Tta	2	2	B.1.525	0.000226
S	68	I68del2	aTA	a--	2	2	B.1.576	0.001813
S	68	I68I	atA	atC	2	2	B.1.582	0.000981
S	68	I68I	atA	atC	2	2	B.1.590	0.009091
S	68	I68del2	aTA	a--	2	2	B.1.617.1	0.000258
S	68	I68M	atA	atG	2	2	B.1.617.2	0.000008
S	68	I68I	atA	atC	2	2	B.1.626	0.011429
S	68	I68del	ATA	---	2	2	B.1.634	0.006849
S	68	I68del	ATA	---	2	2	B.1.637	0.000146
S	68	I68T	aTa	aCa	2	2	B.1.637	0.000146
S	68	I68I	atA	atC	2	2	B.1.94	0.054054
S	68	I68I	atA	atC	2	2	B.6.6	0.001778
S	68	I68del	ATA	---	2	2	C.36.3	0.001134
S	68	I68del2	aTA	a--	2	2	C.36.3	0.001134
S	68	I68I	atA	atC	2	2	C.39	0.037736
S	68	I68R	aTa	aGa	2	2	P.1	0.000032
S	68	I68G	ATa	GGa	2	2	P.1	0.000032
S	68	I68I	atA	atC	2	2	P.1.17	0.000324
S	68	I68V	Ata	Gta	2	2	P.1.3	0.068966
S	68	I68del2	aTA	a--	2	2	Q.3	0.00029
S	68	I68del	ATA	---	2	2	R.1	0.00018
S	68	I68L	Ata	Tta	1	1	A.2.4	0.003367
S	68	I68I	atA	atC	1	1	A.2.5.1	0.004808
S	68	I68T	aTa	aCa	1	1	A.2.5.1	0.004808
S	68	I68I	atA	atC	1	1	A.2.5.2	0.001572
S	68	I68I	atA	atC	1	1	A.23.1	0.000704
S	68	I68del1	atA	at-	1	1	A.28	0.002646
S	68	I68T	aTa	aCa	1	1	AH.2	0.012048
S	68	I68Q	ATa	CAa	1	1	All	0
S	68	I68D	ATA	GAC	1	1	All	0
S	68	I68del1	Ata	-ta	1	1	AT.1	0.005128
S	68	I68T	aTa	aCa	1	1	AY.10	0.00053
S	68	I68M	atA	atG	1	1	AY.100	0.000046
S	68	I68T	aTa	aCa	1	1	AY.101	0.00049
S	68	I68I	atA	atC	1	1	AY.101	0.00049
S	68	I68K	aTa	aAa	1	1	AY.102	0.000027
S	68	I68L	Ata	Cta	1	1	AY.102	0.000027
S	68	I68R	aTa	aGa	1	1	AY.102	0.000027
S	68	I68K	aTa	aAa	1	1	AY.103	0.000006
S	68	I68L	Ata	Tta	1	1	AY.103	0.000006
S	68	I68R	aTa	aGa	1	1	AY.103	0.000006
S	68	I68del1	aTA	a-N	1	1	AY.103	0.000006
S	68	I68del	ATA	---	1	1	AY.105	0.000643
S	68	I68F	AtA	TtT	1	1	AY.107	0.000466
S	68	I68V	Ata	Gta	1	1	AY.107	0.000466
S	68	I68del	ATA	---	1	1	AY.109	0.00074
S	68	I68R	aTa	aGa	1	1	AY.11	0.001339
S	68	I68T	aTa	aCa	1	1	AY.11	0.001339
S	68	I68I	atA	atC	1	1	AY.11	0.001339
S	68	I68L	Ata	Cta	1	1	AY.110	0.000113
S	68	I68R	aTa	aGa	1	1	AY.110	0.000113
S	68	I68del	ATA	---	1	1	AY.110	0.000113
S	68	I68I	atA	atC	1	1	AY.111	0.000183
S	68	I68T	aTa	aCa	1	1	AY.111	0.000183
S	68	I68del2	aTA	a--	1	1	AY.115	0.005208
S	68	I68I	atA	atC	1	1	AY.116.1	0.000311
S	68	I68del1	atA	at-	1	1	AY.118	0.000063
S	68	I68R	aTa	aGa	1	1	AY.119	0.000035
S	68	I68del2	aTA	a--	1	1	AY.119	0.000035
S	68	I68del	ATA	---	1	1	AY.120	0.000037
S	68	I68del2	ATa	--a	1	1	AY.120	0.000037
S	68	I68L	Ata	Cta	1	1	AY.120	0.000037
S	68	I68I	atA	atC	1	1	AY.120.1	0.000321
S	68	I68I	atA	atC	1	1	AY.120.2	0.001285
S	68	I68del2	aTA	a--	1	1	AY.121	0.000135
S	68	I68T	aTa	aCa	1	1	AY.13	0.000161
S	68	I68T	aTa	aCa	1	1	AY.14	0.000088
S	68	I68del	ATA	---	1	1	AY.16	0.00038
S	68	I68T	aTa	aCa	1	1	AY.16	0.00038
S	68	I68L	Ata	Cta	1	1	AY.16.1	0.00047
S	68	I68I	atA	atC	1	1	AY.17	0.008197
S	68	I68del1	atA	at-	1	1	AY.20	0.000039
S	68	I68L	Ata	Tta	1	1	AY.23	0.00007
S	68	I68del	ATA	---	1	1	AY.23	0.00007
S	68	I68R	aTa	aGa	1	1	AY.23	0.00007
S	68	I68M	atA	atG	1	1	AY.24	0.000431
S	68	I68T	aTa	aCa	1	1	AY.24	0.000431
S	68	I68del	ATA	---	1	1	AY.24	0.000431
S	68	I68K	aTa	aAa	1	1	AY.26	0.000028
S	68	I68V	Ata	Gta	1	1	AY.28	0.00189
S	68	I68T	aTa	aCa	1	1	AY.29	0.000016
S	68	I68del	ATA	---	1	1	AY.29	0.000016
S	68	I68V	Ata	Gta	1	1	AY.29	0.000016
S	68	I68K	aTa	aAa	1	1	AY.3	0.00001
S	68	I68R	aTa	aGa	1	1	AY.3	0.00001
S	68	I68L	Ata	Tta	1	1	AY.3	0.00001
S	68	I68K	aTa	aAa	1	1	AY.30	0.000396
S	68	I68del1	atA	at-	1	1	AY.30	0.000396
S	68	I68del2	aTA	a--	1	1	AY.30	0.000396
S	68	I68E	ATa	GAa	1	1	AY.30	0.000396
S	68	I68L	Ata	Cta	1	1	AY.33	0.000067
S	68	I68del	ATA	---	1	1	AY.34	0.000097
S	68	I68T	aTa	aCa	1	1	AY.34	0.000097
S	68	I68K	aTa	aAa	1	1	AY.34	0.000097
S	68	I68del2	aTA	a--	1	1	AY.34.1	0.00051
S	68	I68M	atA	atG	1	1	AY.36	0.000148
S	68	I68L	Ata	Tta	1	1	AY.36	0.000148
S	68	I68del2	aTA	a--	1	1	AY.36	0.000148
S	68	I68K	aTa	aAa	1	1	AY.38	0.000499
S	68	I68K	aTa	aAa	1	1	AY.39	0.000025
S	68	I68del	ATA	---	1	1	AY.39.2	0.001541
S	68	I68I	atA	atC	1	1	AY.4.1	0.000737
S	68	I68del	ATA	---	1	1	AY.4.2	0.000022
S	68	I68del	ATA	---	1	1	AY.4.2.1	0.000149
S	68	I68I	atA	atC	1	1	AY.4.3	0.000842
S	68	I68I	atA	atC	1	1	AY.4.4	0.000409
S	68	I68T	aTa	aCa	1	1	AY.4.4	0.000409
S	68	I68del	ATA	---	1	1	AY.4.4	0.000409
S	68	I68del2	aTA	a--	1	1	AY.42	0.00004
S	68	I68M	atA	atG	1	1	AY.42	0.00004
S	68	I68S	aTA	aGT	1	1	AY.43	0.000004
S	68	I68del2	aTA	a--	1	1	AY.44	0.000006
S	68	I68V	Ata	Gta	1	1	AY.44	0.000006
S	68	I68del2	aTA	a--	1	1	AY.45	0.000122
S	68	I68R	aTa	aGa	1	1	AY.46	0.000104
S	68	I68T	aTa	aCa	1	1	AY.46	0.000104
S	68	I68M	atA	atG	1	1	AY.46	0.000104
S	68	I68M	atA	atG	1	1	AY.46.4	0.000165
S	68	I68I	atA	atC	1	1	AY.46.4	0.000165
S	68	I68del	ATA	---	1	1	AY.46.5	0.000198
S	68	I68del	ATA	---	1	1	AY.46.6	0.000072
S	68	I68del2	aTA	a--	1	1	AY.46.6	0.000072
S	68	I68del1	Ata	-ta	1	1	AY.47	0.000031
S	68	I68M	atA	atG	1	1	AY.5	0.000021
S	68	I68V	Ata	Gta	1	1	AY.5	0.000021
S	68	I68L	Ata	Tta	1	1	AY.5	0.000021
S	68	I68I	atA	atC	1	1	AY.5.1	0.003759
S	68	I68del	ATA	---	1	1	AY.5.3	0.000337
S	68	I68del	ATA	---	1	1	AY.5.4	0.000277
S	68	I68V	Ata	Gta	1	1	AY.50	0.000799
S	68	I68I	atA	atC	1	1	AY.51	0.000909
S	68	I68del	ATA	---	1	1	AY.56	0.001605
S	68	I68I	atA	atC	1	1	AY.58	0.000907
S	68	I68N	aTA	aAT	1	1	AY.59	0.00053
S	68	I68R	aTa	aGa	1	1	AY.6	0.000041
S	68	I68M	atA	atG	1	1	AY.6	0.000041
S	68	I68V	Ata	Gta	1	1	AY.6	0.000041
S	68	I68T	aTa	aCa	1	1	AY.6	0.000041
S	68	I68L	Ata	Tta	1	1	AY.6	0.000041
S	68	I68del1	Ata	-ta	1	1	AY.6	0.000041
S	68	I68del	ATA	---	1	1	AY.60	0.000938
S	68	I68del1	aTA	a-N	1	1	AY.62	0.000436
S	68	I68T	aTa	aCa	1	1	AY.63	0.000387
S	68	I68I	atA	atC	1	1	AY.63	0.000387
S	68	I68I	atA	atC	1	1	AY.64	0.000595
S	68	I68del	ATA	---	1	1	AY.64	0.000595
S	68	I68L	Ata	Tta	1	1	AY.65	0.000533
S	68	I68T	aTa	aCa	1	1	AY.65	0.000533
S	68	I68T	aTa	aCa	1	1	AY.67	0.000464
S	68	I68del	ATA	---	1	1	AY.67	0.000464
S	68	I68del	ATA	---	1	1	AY.68	0.000274
S	68	I68T	aTa	aCa	1	1	AY.7	0.000196
S	68	I68I	atA	atC	1	1	AY.7	0.000196
S	68	I68R	aTa	aGa	1	1	AY.7.1	0.000113
S	68	I68K	aTa	aAa	1	1	AY.7.1	0.000113
S	68	I68T	aTa	aCa	1	1	AY.7.2	0.000559
S	68	I68del	ATA	---	1	1	AY.70	0.000209
S	68	I68del1	Ata	-ta	1	1	AY.71	0.000475
S	68	I68del1	aTA	a-N	1	1	AY.72	0.001361
S	68	I68I	atA	atC	1	1	AY.72	0.001361
S	68	I68del	ATA	---	1	1	AY.72	0.001361
S	68	I68del	ATA	---	1	1	AY.73	0.000665
S	68	I68del	ATA	---	1	1	AY.74	0.000116
S	68	I68del1	Ata	-ta	1	1	AY.75	0.000056
S	68	I68del1	atA	at-	1	1	AY.75.1	0.00018
S	68	I68V	Ata	Gta	1	1	AY.75.1	0.00018
S	68	I68I	atA	atC	1	1	AY.77	0.001127
S	68	I68L	AtA	CtG	1	1	AY.79	0.001211
S	68	I68V	Ata	Gta	1	1	AY.82	0.001357
S	68	I68I	atA	atC	1	1	AY.83	0.001724
S	68	I68del	ATA	---	1	1	AY.84	0.000437
S	68	I68T	aTa	aCa	1	1	AY.85	0.000427
S	68	I68R	aTa	aGa	1	1	AY.85	0.000427
S	68	I68K	aTA	aAG	1	1	AY.85	0.000427
S	68	I68I	atA	atC	1	1	AY.86	0.00083
S	68	I68I	atA	atC	1	1	AY.87	0.000833
S	68	I68del1	Ata	-ta	1	1	AY.9	0.000068
S	68	I68del2	ATa	--a	1	1	AY.9	0.000068
S	68	I68T	aTa	aCa	1	1	AY.9.1	0.000084
S	68	I68T	aTa	aCa	1	1	AY.9.2	0.000037
S	68	I68del1	atA	at-	1	1	AY.9.2	0.000037
S	68	I68del2	aTA	a--	1	1	AY.9.2	0.000037
S	68	I68I	atA	atC	1	1	AY.91.1	0.004065
S	68	I68T	aTa	aCa	1	1	AY.92	0.000287
S	68	I68del1	Ata	-ta	1	1	AY.94	0.000443
S	68	I68T	aTA	aCG	1	1	AY.95	0.000761
S	68	I68del1	Ata	-ta	1	1	AY.96	0.002075
S	68	I68N	aTA	aAC	1	1	AY.98.1	0.000048
S	68	I68R	aTa	aGa	1	1	AY.98.1	0.000048
S	68	I68del1	atA	at-	1	1	AY.98.1	0.000048
S	68	I68del	ATA	---	1	1	AY.99	0.001049
S	68	I68del	ATA	---	1	1	AZ.2	0.000821
S	68	I68I	atA	atC	1	1	AZ.3	0.00152
S	68	I68R	aTa	aGa	1	1	B	0.000128
S	68	I68K	aTa	aAa	1	1	B.1	0.000009
S	68	I68V	Ata	Gta	1	1	B.1	0.000009
S	68	I68R	aTa	aGa	1	1	B.1	0.000009
S	68	I68N	aTA	aAC	1	1	B.1	0.000009
S	68	I68R	aTa	aGa	1	1	B.1.1	0.000018
S	68	I68del	ATA	---	1	1	B.1.1.118	0.010204
S	68	I68I	atA	atC	1	1	B.1.1.134	0.011364
S	68	I68I	atA	atC	1	1	B.1.1.135	0.004695
S	68	I68del	ATA	---	1	1	B.1.1.148	0.008772
S	68	I68I	atA	atC	1	1	B.1.1.159	0.004673
S	68	I68I	atA	atC	1	1	B.1.1.160	0.02381
S	68	I68I	atA	atC	1	1	B.1.1.171	0.003676
S	68	I68I	atA	atC	1	1	B.1.1.187	0.00885
S	68	I68I	atA	atC	1	1	B.1.1.189	0.001513
S	68	I68del	ATA	---	1	1	B.1.1.216	0.00089
S	68	I68I	atA	atC	1	1	B.1.1.231	0.003096
S	68	I68I	atA	atC	1	1	B.1.1.237	0.005405
S	68	I68I	atA	atC	1	1	B.1.1.254	0.011236
S	68	I68V	Ata	Gta	1	1	B.1.1.263	0.001558
S	68	I68I	atA	atC	1	1	B.1.1.265	0.003155
S	68	I68R	aTa	aGa	1	1	B.1.1.28	0.000311
S	68	I68G	ATa	GGa	1	1	B.1.1.28	0.000311
S	68	I68E	ATa	GAa	1	1	B.1.1.28	0.000311
S	68	I68K	aTa	aAa	1	1	B.1.1.28	0.000311
S	68	I68T	aTa	aCa	1	1	B.1.1.282	0.011628
S	68	I68del1	Ata	-ta	1	1	B.1.1.284	0.000107
S	68	I68del	ATA	---	1	1	B.1.1.306	0.000438
S	68	I68T	aTa	aCa	1	1	B.1.1.311	0.000358
S	68	I68del	ATA	---	1	1	B.1.1.311	0.000358
S	68	I68del	ATA	---	1	1	B.1.1.315	0.008475
S	68	I68T	aTa	aCa	1	1	B.1.1.318	0.000302
S	68	I68del	ATA	---	1	1	B.1.1.318	0.000302
S	68	I68E	ATa	GAa	1	1	B.1.1.33	0.000421
S	68	I68I	atA	atC	1	1	B.1.1.33	0.000421
S	68	I68D	ATA	GAC	1	1	B.1.1.33	0.000421
S	68	I68N	aTA	aAC	1	1	B.1.1.33	0.000421
S	68	I68R	aTa	aGa	1	1	B.1.1.33	0.000421
S	68	I68G	ATa	GGa	1	1	B.1.1.33	0.000421
S	68	I68I	atA	atC	1	1	B.1.1.348	0.000796
S	68	I68I	atA	atC	1	1	B.1.1.351	0.002793
S	68	I68T	aTa	aCa	1	1	B.1.1.37	0.000193
S	68	I68V	Ata	Gta	1	1	B.1.1.372	0.000689
S	68	I68I	atA	atC	1	1	B.1.1.374	0.002375
S	68	I68I	atA	atC	1	1	B.1.1.375	0.011905
S	68	I68I	atA	atC	1	1	B.1.1.388	0.045455
S	68	I68I	atA	atC	1	1	B.1.1.389	0.006061
S	68	I68del2	aTA	a--	1	1	B.1.1.39	0.00051
S	68	I68I	atA	atC	1	1	B.1.1.397	0.002252
S	68	I68I	atA	atC	1	1	B.1.1.416	0.000905
S	68	I68I	atA	atC	1	1	B.1.1.417	0.002703
S	68	I68V	Ata	Gta	1	1	B.1.1.424	0.045455
S	68	I68T	aTa	aCa	1	1	B.1.1.434	0.000349
S	68	I68del	ATA	---	1	1	B.1.1.434	0.000349
S	68	I68I	atA	atC	1	1	B.1.1.44	0.00241
S	68	I68I	atA	atC	1	1	B.1.1.459	0.015385
S	68	I68I	atA	atC	1	1	B.1.1.462	0.008621
S	68	I68R	aTa	aGa	1	1	B.1.1.519	0.00004
S	68	I68T	aTa	aCa	1	1	B.1.1.519	0.00004
S	68	I68del	ATA	---	1	1	B.1.1.523	0.001563
S	68	I68I	atA	atC	1	1	B.1.1.55	0.012987
S	68	I68I	atA	atC	1	1	B.1.1.62	0.027027
S	68	I68I	atA	atC	1	1	B.1.1.63	0.000386
S	68	I68F	AtA	TtC	1	1	B.1.1.7	0.000001
S	68	I68A	ATA	GCT	1	1	B.1.1.7	0.000001
S	68	I68del	ATA	---	1	1	B.1.1.70	0.000341
S	68	I68I	atA	atC	1	1	B.1.1.71	0.006061
S	68	I68I	atA	atC	1	1	B.1.1.99	0.02381
S	68	I68L	Ata	Tta	1	1	B.1.104	0.00369
S	68	I68I	atA	atC	1	1	B.1.126	0.001276
S	68	I68I	atA	atC	1	1	B.1.128	0.000635
S	68	I68M	atA	atG	1	1	B.1.128	0.000635
S	68	I68I	atA	atC	1	1	B.1.140	0.018868
S	68	I68del1	atA	at-	1	1	B.1.157	0.002985
S	68	I68F	AtA	TtC	1	1	B.1.160	0.000031
S	68	I68del2	ATa	--a	1	1	B.1.160	0.000031
S	68	I68V	Ata	Gta	1	1	B.1.160	0.000031
S	68	I68I	atA	atC	1	1	B.1.160.14	0.002119
S	68	I68I	atA	atC	1	1	B.1.160.16	0.000929
S	68	I68del	ATA	---	1	1	B.1.160.32	0.004292
S	68	I68V	Ata	Gta	1	1	B.1.177	0.000013
S	68	I68K	aTa	aAa	1	1	B.1.177	0.000013
S	68	I68L	Ata	Tta	1	1	B.1.177	0.000013
S	68	I68del	ATA	---	1	1	B.1.177.15	0.000631
S	68	I68del	ATA	---	1	1	B.1.177.16	0.000664
S	68	I68del	ATA	---	1	1	B.1.177.17	0.000821
S	68	I68T	aTa	aCa	1	1	B.1.177.18	0.00116
S	68	I68del	ATA	---	1	1	B.1.177.18	0.00116
S	68	I68I	atA	atC	1	1	B.1.177.21	0.000076
S	68	I68del	ATA	---	1	1	B.1.177.21	0.000076
S	68	I68I	atA	atC	1	1	B.1.177.33	0.001645
S	68	I68del	ATA	---	1	1	B.1.177.4	0.000211
S	68	I68I	atA	atC	1	1	B.1.177.40	0.005155
S	68	I68I	atA	atC	1	1	B.1.177.45	0.000381
S	68	I68I	atA	atC	1	1	B.1.177.49	0.037037
S	68	I68del	ATA	---	1	1	B.1.177.51	0.004566
S	68	I68del	ATA	---	1	1	B.1.177.56	0.000668
S	68	I68del	ATA	---	1	1	B.1.177.57	0.000281
S	68	I68T	aTa	aCa	1	1	B.1.177.7	0.000165
S	68	I68L	Ata	Tta	1	1	B.1.177.7	0.000165
S	68	I68del2	aTA	a--	1	1	B.1.177.73	0.000566
S	68	I68I	atA	atC	1	1	B.1.177.73	0.000566
S	68	I68I	atA	atC	1	1	B.1.177.75	0.001041
S	68	I68del	ATA	---	1	1	B.1.177.77	0.000726
S	68	I68I	atA	atC	1	1	B.1.177.81	0.000189
S	68	I68K	aTa	aAa	1	1	B.1.177.81	0.000189
S	68	I68del	ATA	---	1	1	B.1.177.83	0.001481
S	68	I68I	atA	atC	1	1	B.1.199	0.004132
S	68	I68L	Ata	Tta	1	1	B.1.2	0.000009
S	68	I68del	ATA	---	1	1	B.1.214	0.003663
S	68	I68I	atA	atC	1	1	B.1.214.3	0.007143
S	68	I68L	Ata	Cta	1	1	B.1.221	0.000071
S	68	I68del1	atA	at-	1	1	B.1.221	0.000071
S	68	I68L	Ata	Cta	1	1	B.1.234	0.000132
S	68	I68del	ATA	---	1	1	B.1.239	0.001221
S	68	I68I	atA	atC	1	1	B.1.240	0.000216
S	68	I68I	atA	atC	1	1	B.1.241	0.000812
S	68	I68I	atA	atC	1	1	B.1.242	0.018868
S	68	I68T	aTa	aCa	1	1	B.1.243	0.00007
S	68	I68del1	atA	at-	1	1	B.1.258.10	0.011364
S	68	I68del1	atA	at-	1	1	B.1.258.12	0.007874
S	68	I68I	atA	atC	1	1	B.1.258.16	0.001637
S	68	I68T	aTa	aCa	1	1	B.1.258.2	0.004505
S	68	I68del	ATA	---	1	1	B.1.258.24	0.010753
S	68	I68I	atA	atC	1	1	B.1.258.3	0.001675
S	68	I68del	ATA	---	1	1	B.1.258.9	0.005
S	68	I68I	atA	atC	1	1	B.1.260	0.003344
S	68	I68T	aTa	aCa	1	1	B.1.279	0.000514
S	68	I68T	aTa	aCa	1	1	B.1.311	0.000275
S	68	I68T	aTa	aCa	1	1	B.1.324	0.001605
S	68	I68I	atA	atC	1	1	B.1.324	0.001605
S	68	I68T	aTa	aCa	1	1	B.1.349	0.000715
S	68	I68del1	atA	at-	1	1	B.1.351	0.00003
S	68	I68I	atA	atC	1	1	B.1.351.3	0.000876
S	68	I68T	aTa	aCa	1	1	B.1.36	0.000146
S	68	I68I	atA	atC	1	1	B.1.36.10	0.004785
S	68	I68I	atA	atC	1	1	B.1.36.22	0.001208
S	68	I68del	ATA	---	1	1	B.1.36.34	0.021277
S	68	I68del2	aTA	a--	1	1	B.1.36.8	0.001
S	68	I68I	atA	atC	1	1	B.1.361	0.001289
S	68	I68I	atA	atC	1	1	B.1.362	0.001541
S	68	I68T	aTa	aCa	1	1	B.1.380	0.006623
S	68	I68I	atA	atC	1	1	B.1.382	0.008929
S	68	I68del	ATA	---	1	1	B.1.391	0.001127
S	68	I68L	Ata	Tta	1	1	B.1.396	0.000706
S	68	I68I	atA	atC	1	1	B.1.398	0.002976
S	68	I68I	atA	atC	1	1	B.1.399	0.001934
S	68	I68I	atA	atC	1	1	B.1.400	0.000429
S	68	I68T	aTa	aCa	1	1	B.1.400	0.000429
S	68	I68I	atA	atC	1	1	B.1.406	0.006061
S	68	I68I	atA	atC	1	1	B.1.416.1	0.001563
S	68	I68del1	atA	at-	1	1	B.1.427	0.00005
S	68	I68R	aTa	aGa	1	1	B.1.427	0.00005
S	68	I68del2	aTA	a--	1	1	B.1.429	0.000024
S	68	I68Q	ATa	CAa	1	1	B.1.429	0.000024
S	68	I68L	Ata	Tta	1	1	B.1.429	0.000024
S	68	I68S	aTA	aGT	1	1	B.1.429	0.000024
S	68	I68I	atA	atC	1	1	B.1.432	0.011236
S	68	I68I	atA	atC	1	1	B.1.433	0.003195
S	68	I68I	atA	atC	1	1	B.1.438.1	0.000107
S	68	I68I	atA	atC	1	1	B.1.441	0.009615
S	68	I68I	atA	atC	1	1	B.1.446	0.02
S	68	I68I	atA	atC	1	1	B.1.462	0.007246
S	68	I68I	atA	atC	1	1	B.1.469	0.00361
S	68	I68K	aTa	aAa	1	1	B.1.497	0.000315
S	68	I68I	atA	atC	1	1	B.1.497	0.000315
S	68	I68I	atA	atC	1	1	B.1.499	0.00105
S	68	I68T	aTa	aCa	1	1	B.1.509	0.000866
S	68	I68V	AtA	GtT	1	1	B.1.525	0.000113
S	68	I68A	ATa	GCa	1	1	B.1.525	0.000113
S	68	I68N	aTA	aAC	1	1	B.1.525	0.000113
S	68	I68M	atA	atG	1	1	B.1.525	0.000113
S	68	I68del	ATA	---	1	1	B.1.526	0.000024
S	68	I68V	Ata	Gta	1	1	B.1.526	0.000024
S	68	I68L	Ata	Tta	1	1	B.1.527	0.003704
S	68	I68T	aTa	aCa	1	1	B.1.558	0.004566
S	68	I68I	atA	atC	1	1	B.1.560	0.00463
S	68	I68I	atA	atC	1	1	B.1.561	0.000397
S	68	I68L	Ata	Tta	1	1	B.1.564.1	0.001577
S	68	I68L	Ata	Tta	1	1	B.1.567	0.003333
S	68	I68I	atA	atC	1	1	B.1.568	0.001111
S	68	I68del	ATA	---	1	1	B.1.575.2	0.004808
S	68	I68del	ATA	---	1	1	B.1.577	0.000687
S	68	I68I	atA	atC	1	1	B.1.595	0.000261
S	68	I68K	aTa	aAa	1	1	B.1.595	0.000261
S	68	I68del	ATA	---	1	1	B.1.595	0.000261
S	68	I68del2	aTA	a--	1	1	B.1.596	0.000087
S	68	I68V	Ata	Gta	1	1	B.1.596	0.000087
S	68	I68M	atA	atG	1	1	B.1.599	0.00365
S	68	I68T	aTa	aCa	1	1	B.1.609	0.000479
S	68	I68del1	aTa	a-a	1	1	B.1.617.1	0.000129
S	68	I68I	atA	atC	1	1	B.1.617.3	0.002985
S	68	I68T	aTa	aCa	1	1	B.1.619	0.000871
S	68	I68del1	atA	at-	1	1	B.1.620	0.000946
S	68	I68del	ATA	---	1	1	B.1.620	0.000946
S	68	I68del	ATA	---	1	1	B.1.621	0.000089
S	68	I68M	atA	atG	1	1	B.1.621	0.000089
S	68	I68K	aTa	aAa	1	1	B.1.621	0.000089
S	68	I68del2	aTA	a--	1	1	B.1.623	0.000536
S	68	I68T	aTa	aCa	1	1	B.1.627	0.00202
S	68	I68V	Ata	Gta	1	1	B.1.628	0.000352
S	68	I68I	atA	atC	1	1	B.1.631	0.003367
S	68	I68V	Ata	Gta	1	1	B.1.637	0.000073
S	68	I68L	Ata	Tta	1	1	B.1.637	0.000073
S	68	I68del1	Ata	-ta	1	1	B.1.637	0.000073
S	68	I68I	atA	atC	1	1	B.1.78	0.008547
S	68	I68I	atA	atC	1	1	B.1.81	0.021277
S	68	I68I	atA	atC	1	1	B.1.9.5	0.005682
S	68	I68T	aTa	aCa	1	1	B.1.91	0.002075
S	68	I68I	atA	atC	1	1	B.28	0.003279
S	68	I68I	atA	atC	1	1	B.55	0.00295
S	68	I68K	aTa	aAa	1	1	B.6.6	0.000889
S	68	I68I	atA	atC	1	1	C.16	0.00106
S	68	I68I	atA	atC	1	1	C.26	0.007353
S	68	I68I	atA	atC	1	1	C.35	0.000774
S	68	I68del	ATA	---	1	1	C.35	0.000774
S	68	I68del1	atA	at-	1	1	C.36.3	0.000567
S	68	I68del	ATA	---	1	1	C.36.3.1	0.002717
S	68	I68I	atA	atC	1	1	L.3	0.003546
S	68	I68I	atA	atC	1	1	N.5	0.001767
S	68	I68M	atA	atG	1	1	P.1	0.000016
S	68	I68del	ATA	---	1	1	P.1.1	0.000318
S	68	I68del	ATA	---	1	1	P.1.10.1	0.00813
S	68	I68I	atA	atC	1	1	P.1.13	0.000898
S	68	I68del	ATA	---	1	1	P.1.15	0.000232
S	68	I68T	aTa	aCa	1	1	P.1.2	0.001156
S	68	I68T	aTa	aCa	1	1	P.1.7	0.000319
S	68	I68E	ATa	GAa	1	1	P.2	0.000187
S	68	I68R	aTa	aGa	1	1	P.2	0.000187
S	68	I68G	ATa	GGa	1	1	P.2	0.000187
S	68	I68I	atA	atC	1	1	P.2	0.000187
S	68	I68V	Ata	Gta	1	1	P.2	0.000187
S	68	I68K	aTa	aAa	1	1	P.2	0.000187
S	68	I68T	aTa	aCa	1	1	P.6	0.003145
S	68	I68I	atA	atC	1	1	P.6	0.003145
S	68	I68R	aTa	aGa	1	1	P.7	0.004367
S	68	I68del1	atA	at-	1	1	Q.1	0.000126
S	68	I68del	ATA	---	1	1	Q.2	0.000613
S	68	I68del	ATA	---	1	1	Q.3	0.000145
S	68	I68del1	atA	at-	1	1	Q.4	0.000455
S	68	I68del2	aTA	a--	1	1	Q.4	0.000455
S	68	I68del2	ATa	--a	1	1	U.3	0.003861
S	68	I68I	atA	atC	1	1	W.2	0.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.