CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 679 | N679K | nonsyn | aaT | aaA | 4948 | 2949 | 0.595998 | 23597-23599 | |
S | 679 | N679K | nonsyn | aaT | aaG | 4948 | 1999 | 0.404002 | 23597-23599 | |
S | 679 | N679S | nonsyn | aAt | aGt | 483 | 479 | 0.991718 | 23597-23599 | |
S | 679 | N679S | nonsyn | AAT | TCA | 483 | 2 | 0.00414079 | 23597-23599 | |
S | 679 | N679S | nonsyn | aAT | aGC | 483 | 2 | 0.00414079 | 23597-23599 | |
S | 679 | N679T | nonsyn | aAt | aCt | 444 | 440 | 0.990991 | 23597-23599 | |
S | 679 | N679T | nonsyn | aAT | aCA | 444 | 4 | 0.00900901 | 23597-23599 | |
S | 679 | N679N | syn | aaT | aaC | 409 | 409 | 1 | 23597-23599 | |
S | 679 | N679Y | nonsyn | Aat | Tat | 212 | 209 | 0.985849 | 23597-23599 | |
S | 679 | N679Y | nonsyn | AaT | TaC | 212 | 3 | 0.0141509 | 23597-23599 | |
S | 679 | N679I | nonsyn | aAt | aTt | 198 | 198 | 1 | 23597-23599 | |
S | 679 | N679del | del | AAT | --- | 161 | 161 | 1 | 23597-23599 | |
S | 679 | N679D | nonsyn | Aat | Gat | 85 | 85 | 1 | 23597-23599 | |
S | 679 | N679H | nonsyn | Aat | Cat | 42 | 42 | 1 | 23597-23599 | |
S | 679 | N679G | nonsyn | AAt | GGt | 9 | 9 | 1 | 23597-23599 | |
S | 679 | N679del2 | del | aAT | a-- | 5 | 5 | 1 | 23597-23599 | |
S | 679 | N679R | nonsyn | aAT | aGG | 3 | 3 | 1 | 23597-23599 | |
S | 679 | N679X | nonsyn | AaT | TaA | 3 | 3 | 1 | 23597-23599 | |
S | 679 | N679del1 | del | Aat | -at | 2 | 2 | 1 | 23597-23599 | |
S | 679 | N679L | nonsyn | AAT | CTC | 1 | 1 | 1 | 23597-23599 | |
S | 679 | N679E | nonsyn | AaT | GaA | 1 | 1 | 1 | 23597-23599 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 679 | N679K | aaT | aaA | 2949 | 4948 | All | 0.000564 |
S | 679 | N679K | aaT | aaG | 1999 | 4948 | All | 0.000382 |
S | 679 | N679K | aaT | aaG | 1021 | 1021 | P.1.4 | 0.99707 |
S | 679 | N679K | aaT | aaG | 665 | 717 | B.1.2 | 0.005856 |
S | 679 | N679K | aaT | aaA | 52 | 717 | B.1.2 | 0.000458 |
S | 679 | N679K | aaT | aaA | 684 | 684 | P.1.12 | 0.331075 |
S | 679 | N679K | aaT | aaA | 609 | 609 | B.1.1.433 | 0.867521 |
S | 679 | N679S | aAt | aGt | 479 | 483 | All | 0.000092 |
S | 679 | N679S | AAT | TCA | 2 | 483 | All | 0 |
S | 679 | N679S | aAT | aGC | 2 | 483 | All | 0 |
S | 679 | N679T | aAt | aCt | 440 | 444 | All | 0.000084 |
S | 679 | N679T | aAT | aCA | 4 | 444 | All | 0.000001 |
S | 679 | N679N | aaT | aaC | 409 | 409 | All | 0.000078 |
S | 679 | N679K | aaT | aaA | 253 | 281 | B.1.1 | 0.00459 |
S | 679 | N679K | aaT | aaG | 28 | 281 | B.1.1 | 0.000508 |
S | 679 | N679K | aaT | aaA | 254 | 254 | B.1.111 | 0.298472 |
S | 679 | N679K | aaT | aaA | 249 | 249 | B.1.234 | 0.032854 |
S | 679 | N679Y | Aat | Tat | 209 | 212 | All | 0.00004 |
S | 679 | N679Y | AaT | TaC | 3 | 212 | All | 0.000001 |
S | 679 | N679K | aaT | aaA | 210 | 210 | C.1.2 | 0.893617 |
S | 679 | N679I | aAt | aTt | 198 | 198 | All | 0.000038 |
S | 679 | N679del | AAT | --- | 161 | 161 | All | 0.000031 |
S | 679 | N679S | aAt | aGt | 100 | 100 | AY.27 | 0.006472 |
S | 679 | N679K | aaT | aaA | 84 | 86 | B.1.258 | 0.00559 |
S | 679 | N679K | aaT | aaG | 2 | 86 | B.1.258 | 0.000133 |
S | 679 | N679D | Aat | Gat | 85 | 85 | All | 0.000016 |
S | 679 | N679K | aaT | aaA | 58 | 85 | B.1 | 0.000531 |
S | 679 | N679K | aaT | aaG | 27 | 85 | B.1 | 0.000247 |
S | 679 | N679Y | Aat | Tat | 79 | 79 | AY.4 | 0.000123 |
S | 679 | N679I | aAt | aTt | 78 | 78 | AY.4.2 | 0.001692 |
S | 679 | N679N | aaT | aaC | 72 | 72 | AY.4 | 0.000112 |
S | 679 | N679K | aaT | aaG | 68 | 68 | B.1.243.2 | 0.985507 |
S | 679 | N679K | aaT | aaA | 56 | 64 | P.1 | 0.000882 |
S | 679 | N679K | aaT | aaG | 8 | 64 | P.1 | 0.000126 |
S | 679 | N679K | aaT | aaA | 63 | 63 | B.1.1.28 | 0.019608 |
S | 679 | N679S | aAt | aGt | 61 | 61 | B.1.617.2 | 0.00023 |
S | 679 | N679T | aAt | aCt | 59 | 59 | B.1.2 | 0.00052 |
S | 679 | N679Y | Aat | Tat | 51 | 51 | B.1.1.7 | 0.000046 |
S | 679 | N679D | Aat | Gat | 48 | 48 | B.1.1.7 | 0.000043 |
S | 679 | N679S | aAt | aGt | 47 | 47 | AY.4 | 0.000073 |
S | 679 | N679T | aAt | aCt | 45 | 45 | B.1.617.2 | 0.000169 |
S | 679 | N679S | aAt | aGt | 43 | 43 | B.1.1.7 | 0.000038 |
S | 679 | N679H | Aat | Cat | 42 | 42 | All | 0.000008 |
S | 679 | N679T | aAt | aCt | 42 | 42 | AY.3 | 0.000418 |
S | 679 | N679K | aaT | aaA | 42 | 42 | B.1.9.5 | 0.238636 |
S | 679 | N679N | aaT | aaC | 41 | 41 | AY.25 | 0.000247 |
S | 679 | N679S | aAt | aGt | 41 | 41 | AY.29 | 0.000647 |
S | 679 | N679K | aaT | aaA | 26 | 41 | B.1.1.7 | 0.000023 |
S | 679 | N679K | aaT | aaG | 15 | 41 | B.1.1.7 | 0.000013 |
S | 679 | N679K | aaT | aaG | 40 | 40 | B.1.36.1 | 0.04561 |
S | 679 | N679T | aAt | aCt | 38 | 38 | AY.4 | 0.000059 |
S | 679 | N679N | aaT | aaC | 37 | 37 | AY.44 | 0.000225 |
S | 679 | N679I | aAt | aTt | 35 | 35 | AY.43 | 0.000155 |
S | 679 | N679del | AAT | --- | 35 | 35 | B.1 | 0.000321 |
S | 679 | N679S | aAt | aGt | 34 | 34 | AY.121 | 0.004601 |
S | 679 | N679N | aaT | aaC | 32 | 32 | B.1.1.7 | 0.000029 |
S | 679 | N679T | aAt | aCt | 29 | 29 | AY.26 | 0.000821 |
S | 679 | N679K | aaT | aaA | 29 | 29 | C.36.3.1 | 0.078804 |
S | 679 | N679S | aAt | aGt | 28 | 28 | AY.39 | 0.000692 |
S | 679 | N679T | aAt | aCt | 28 | 28 | B.1.1.7 | 0.000025 |
S | 679 | N679T | aAt | aCt | 27 | 27 | AY.25 | 0.000162 |
S | 679 | N679S | aAt | aGt | 27 | 27 | B.1.177 | 0.000356 |
S | 679 | N679K | aaT | aaG | 26 | 26 | B.1.637 | 0.0019 |
S | 679 | N679N | aaT | aaC | 25 | 25 | B.1.2 | 0.00022 |
S | 679 | N679I | aAt | aTt | 24 | 24 | AY.103 | 0.000149 |
S | 679 | N679N | aaT | aaC | 22 | 22 | AY.43 | 0.000097 |
S | 679 | N679N | aaT | aaC | 22 | 22 | B.1.177 | 0.00029 |
S | 679 | N679K | aaT | aaA | 22 | 22 | B.1.214.2 | 0.013189 |
S | 679 | N679S | aAt | aGt | 21 | 21 | B.1.609 | 0.010067 |
S | 679 | N679T | aAt | aCt | 20 | 20 | AY.43 | 0.000089 |
S | 679 | N679K | aaT | aaA | 20 | 20 | B.1.1.203 | 0.338983 |
S | 679 | N679K | aaT | aaA | 20 | 20 | B.1.560 | 0.092593 |
S | 679 | N679N | aaT | aaC | 19 | 19 | B.1.617.2 | 0.000072 |
S | 679 | N679Y | Aat | Tat | 18 | 18 | AY.103 | 0.000112 |
S | 679 | N679K | aaT | aaA | 18 | 18 | B.1.1.1 | 0.00588 |
S | 679 | N679K | aaT | aaG | 18 | 18 | B.1.529 | 1 |
S | 679 | N679T | aAt | aCt | 17 | 17 | AY.103 | 0.000106 |
S | 679 | N679K | aaT | aaA | 16 | 16 | B.1.177 | 0.000211 |
S | 679 | N679I | aAt | aTt | 16 | 16 | B.1.617.2 | 0.00006 |
S | 679 | N679K | aaT | aaA | 12 | 16 | C.37 | 0.001393 |
S | 679 | N679K | aaT | aaG | 4 | 16 | C.37 | 0.000464 |
S | 679 | N679H | Aat | Cat | 15 | 15 | B.1.1 | 0.000272 |
S | 679 | N679del | AAT | --- | 15 | 15 | B.1.1 | 0.000272 |
S | 679 | N679K | aaT | aaA | 15 | 15 | K.2 | 0.6 |
S | 679 | N679K | aaT | aaG | 14 | 14 | AY.25 | 0.000084 |
S | 679 | N679K | aaT | aaA | 14 | 14 | B.1.470 | 0.019663 |
S | 679 | N679K | aaT | aaG | 13 | 13 | B.1.596 | 0.001133 |
S | 679 | N679K | aaT | aaA | 13 | 13 | P.1.5 | 1 |
S | 679 | N679N | aaT | aaC | 11 | 11 | B.1.1.274 | 0.055556 |
S | 679 | N679del | AAT | --- | 11 | 11 | B.1.160 | 0.000343 |
S | 679 | N679T | aAt | aCt | 10 | 10 | AY.120.1 | 0.00321 |
S | 679 | N679N | aaT | aaC | 10 | 10 | AY.3 | 0.000099 |
S | 679 | N679del | AAT | --- | 10 | 10 | B | 0.001278 |
S | 679 | N679I | aAt | aTt | 10 | 10 | B.1.1.7 | 0.000009 |
S | 679 | N679K | aaT | aaG | 5 | 10 | B.1.36 | 0.00073 |
S | 679 | N679K | aaT | aaA | 5 | 10 | B.1.36 | 0.00073 |
S | 679 | N679G | AAt | GGt | 9 | 9 | All | 0.000002 |
S | 679 | N679T | aAt | aCt | 9 | 9 | AY.9.2 | 0.000331 |
S | 679 | N679H | Aat | Cat | 9 | 9 | B.1.1.419 | 0.066667 |
S | 679 | N679D | Aat | Gat | 8 | 8 | AY.4 | 0.000012 |
S | 679 | N679N | aaT | aaC | 8 | 8 | AY.45 | 0.000973 |
S | 679 | N679T | aAt | aCt | 8 | 8 | AY.47 | 0.000249 |
S | 679 | N679K | aaT | aaA | 8 | 8 | B.1.1.291 | 0.005939 |
S | 679 | N679H | Aat | Cat | 8 | 8 | B.1.1.306 | 0.003507 |
S | 679 | N679del | AAT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
S | 679 | N679N | aaT | aaC | 8 | 8 | B.1.177.7 | 0.001319 |
S | 679 | N679Y | Aat | Tat | 8 | 8 | B.1.2 | 0.00007 |
S | 679 | N679del | AAT | --- | 8 | 8 | B.1.617.2 | 0.00003 |
S | 679 | N679S | aAt | aGt | 7 | 7 | AY.103 | 0.000043 |
S | 679 | N679N | aaT | aaC | 7 | 7 | AY.103 | 0.000043 |
S | 679 | N679del | AAT | --- | 7 | 7 | AY.43 | 0.000031 |
S | 679 | N679Y | Aat | Tat | 7 | 7 | B.1.177.10 | 0.006146 |
S | 679 | N679Y | Aat | Tat | 7 | 7 | B.1.617.2 | 0.000026 |
S | 679 | N679Y | Aat | Tat | 7 | 7 | P.1 | 0.00011 |
S | 679 | N679T | aAt | aCt | 6 | 6 | AY.102 | 0.000159 |
S | 679 | N679N | aaT | aaC | 6 | 6 | AY.20 | 0.000233 |
S | 679 | N679I | aAt | aTt | 6 | 6 | AY.3 | 0.00006 |
S | 679 | N679K | aaT | aaA | 6 | 6 | B.1.1.317 | 0.00247 |
S | 679 | N679K | aaT | aaA | 6 | 6 | B.1.1.382 | 0.214286 |
S | 679 | N679del2 | aAT | a-- | 5 | 5 | All | 0.000001 |
S | 679 | N679del | AAT | --- | 5 | 5 | AY.107 | 0.00233 |
S | 679 | N679T | aAt | aCt | 5 | 5 | AY.119 | 0.000177 |
S | 679 | N679D | Aat | Gat | 5 | 5 | AY.120 | 0.000186 |
S | 679 | N679N | aaT | aaC | 5 | 5 | AY.23 | 0.000349 |
S | 679 | N679S | aAt | aGt | 5 | 5 | AY.25 | 0.00003 |
S | 679 | N679T | aAt | aCt | 4 | 5 | AY.39 | 0.000099 |
S | 679 | N679T | aAT | aCA | 1 | 5 | AY.39 | 0.000025 |
S | 679 | N679T | aAt | aCt | 5 | 5 | AY.5 | 0.000103 |
S | 679 | N679D | Aat | Gat | 5 | 5 | AY.9.2 | 0.000184 |
S | 679 | N679T | aAt | aCt | 5 | 5 | AY.99.2 | 0.000461 |
S | 679 | N679N | aaT | aaC | 5 | 5 | B.1.1 | 0.000091 |
S | 679 | N679K | aaT | aaG | 4 | 5 | B.1.1.25 | 0.002274 |
S | 679 | N679K | aaT | aaA | 1 | 5 | B.1.1.25 | 0.000569 |
S | 679 | N679K | aaT | aaA | 5 | 5 | B.1.1.372 | 0.003444 |
S | 679 | N679T | aAt | aCt | 5 | 5 | B.1.429 | 0.000118 |
S | 679 | N679K | aaT | aaG | 5 | 5 | P.1.10 | 0.001347 |
S | 679 | N679N | aaT | aaC | 5 | 5 | P.2 | 0.000933 |
S | 679 | N679del | AAT | --- | 4 | 4 | A | 0.001548 |
S | 679 | N679N | aaT | aaC | 4 | 4 | AY.102 | 0.000106 |
S | 679 | N679del | AAT | --- | 4 | 4 | AY.4 | 0.000006 |
S | 679 | N679T | aAt | aCt | 4 | 4 | AY.4.2 | 0.000087 |
S | 679 | N679T | aAt | aCt | 3 | 4 | AY.46 | 0.000312 |
S | 679 | N679T | aAT | aCA | 1 | 4 | AY.46 | 0.000104 |
S | 679 | N679S | aAt | aGt | 4 | 4 | AY.6 | 0.000165 |
S | 679 | N679T | aAt | aCt | 4 | 4 | AY.87 | 0.003331 |
S | 679 | N679D | Aat | Gat | 4 | 4 | B.1 | 0.000037 |
S | 679 | N679S | aAt | aGt | 4 | 4 | B.1.1.431 | 0.064516 |
S | 679 | N679H | Aat | Cat | 4 | 4 | B.1.351 | 0.000119 |
S | 679 | N679K | aaT | aaG | 4 | 4 | B.1.411 | 0.014815 |
S | 679 | N679K | aaT | aaA | 4 | 4 | B.1.540 | 0.038835 |
S | 679 | N679del | AAT | --- | 4 | 4 | P.1.15 | 0.000929 |
S | 679 | N679K | aaT | aaA | 2 | 3 | 0.111111 | |
S | 679 | N679K | aaT | aaG | 1 | 3 | 0.055556 | |
S | 679 | N679X | AaT | TaA | 3 | 3 | All | 0.000001 |
S | 679 | N679R | aAT | aGG | 3 | 3 | All | 0.000001 |
S | 679 | N679N | aaT | aaC | 3 | 3 | AY.100 | 0.000138 |
S | 679 | N679del | AAT | --- | 3 | 3 | AY.103 | 0.000019 |
S | 679 | N679N | aaT | aaC | 3 | 3 | AY.118 | 0.000188 |
S | 679 | N679T | aAt | aCt | 3 | 3 | AY.12 | 0.000948 |
S | 679 | N679I | aAt | aTt | 3 | 3 | AY.14 | 0.000264 |
S | 679 | N679del | AAT | --- | 3 | 3 | AY.25 | 0.000018 |
S | 679 | N679del | AAT | --- | 3 | 3 | AY.3 | 0.00003 |
S | 679 | N679N | aaT | aaC | 3 | 3 | AY.3.1 | 0.000256 |
S | 679 | N679I | aAt | aTt | 3 | 3 | AY.4 | 0.000005 |
S | 679 | N679S | aAt | aGt | 3 | 3 | AY.5 | 0.000062 |
S | 679 | N679T | aAt | aCt | 3 | 3 | AY.7.1 | 0.000338 |
S | 679 | N679N | aaT | aaC | 3 | 3 | AY.92 | 0.000862 |
S | 679 | N679I | aAt | aTt | 3 | 3 | B.1 | 0.000027 |
S | 679 | N679K | aaT | aaA | 3 | 3 | B.1.1.153 | 0.003286 |
S | 679 | N679K | aaT | aaA | 3 | 3 | B.1.1.216 | 0.002671 |
S | 679 | N679K | aaT | aaA | 3 | 3 | B.1.1.54 | 0.009063 |
S | 679 | N679G | AAt | GGt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 679 | N679K | aaT | aaA | 3 | 3 | B.1.177.60 | 0.000655 |
S | 679 | N679R | aAT | aGG | 3 | 3 | B.1.2 | 0.000026 |
S | 679 | N679S | aAt | aGt | 2 | 3 | B.1.2 | 0.000018 |
S | 679 | N679S | aAT | aGC | 1 | 3 | B.1.2 | 0.000009 |
S | 679 | N679K | aaT | aaA | 3 | 3 | B.1.221 | 0.000213 |
S | 679 | N679N | aaT | aaC | 3 | 3 | B.1.236 | 0.00616 |
S | 679 | N679K | aaT | aaA | 3 | 3 | B.1.258.3 | 0.005025 |
S | 679 | N679K | aaT | aaG | 3 | 3 | B.1.36.8 | 0.003 |
S | 679 | N679K | aaT | aaG | 3 | 3 | B.1.396 | 0.002117 |
S | 679 | N679K | aaT | aaA | 3 | 3 | B.1.429 | 0.000071 |
S | 679 | N679N | aaT | aaC | 3 | 3 | B.1.509 | 0.002597 |
S | 679 | N679K | aaT | aaA | 2 | 3 | B.1.525 | 0.000226 |
S | 679 | N679K | aaT | aaG | 1 | 3 | B.1.525 | 0.000113 |
S | 679 | N679K | aaT | aaG | 3 | 3 | B.1.526 | 0.000071 |
S | 679 | N679N | aaT | aaC | 3 | 3 | B.1.526 | 0.000071 |
S | 679 | N679S | aAt | aGt | 3 | 3 | B.1.561 | 0.001191 |
S | 679 | N679Y | AaT | TaC | 3 | 3 | B.1.575 | 0.00091 |
S | 679 | N679K | aaT | aaG | 3 | 3 | B.1.617.2 | 0.000011 |
S | 679 | N679del | AAT | --- | 3 | 3 | P.1 | 0.000047 |
S | 679 | N679N | aaT | aaC | 3 | 3 | P.1.14 | 0.000143 |
S | 679 | N679X | AaT | TaA | 2 | 2 | 0.111111 | |
S | 679 | N679del | AAT | --- | 2 | 2 | 0.111111 | |
S | 679 | N679T | aAT | aCA | 2 | 2 | 0.111111 | |
S | 679 | N679S | AAT | TCA | 2 | 2 | 0.111111 | |
S | 679 | N679K | aaT | aaA | 1 | 2 | A | 0.000387 |
S | 679 | N679K | aaT | aaG | 1 | 2 | A | 0.000387 |
S | 679 | N679K | aaT | aaG | 2 | 2 | A.2.4 | 0.006734 |
S | 679 | N679H | Aat | Cat | 2 | 2 | A.2.5 | 0.000998 |
S | 679 | N679del1 | Aat | -at | 2 | 2 | All | 0 |
S | 679 | N679N | aaT | aaC | 2 | 2 | AY.101 | 0.000981 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.113 | 0.000285 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.118 | 0.000125 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.121 | 0.000271 |
S | 679 | N679K | aaT | aaA | 2 | 2 | AY.20 | 0.000078 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | AY.20 | 0.000078 |
S | 679 | N679S | aAt | aGt | 2 | 2 | AY.23.1 | 0.000835 |
S | 679 | N679D | Aat | Gat | 2 | 2 | AY.29 | 0.000032 |
S | 679 | N679S | aAt | aGt | 2 | 2 | AY.3 | 0.00002 |
S | 679 | N679N | aaT | aaC | 2 | 2 | AY.34 | 0.000194 |
S | 679 | N679I | aAt | aTt | 2 | 2 | AY.39 | 0.000049 |
S | 679 | N679S | aAt | aGt | 2 | 2 | AY.4.2 | 0.000043 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.4.5 | 0.000215 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.42 | 0.00008 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | AY.43 | 0.000009 |
S | 679 | N679del | AAT | --- | 2 | 2 | AY.44 | 0.000012 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | AY.44 | 0.000012 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.44 | 0.000012 |
S | 679 | N679S | aAt | aGt | 2 | 2 | AY.44 | 0.000012 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.45 | 0.000243 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.54 | 0.000191 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.6 | 0.000082 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.61 | 0.00021 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.84 | 0.000875 |
S | 679 | N679N | aaT | aaC | 2 | 2 | AY.9.2.1 | 0.003953 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.91 | 0.001461 |
S | 679 | N679T | aAt | aCt | 2 | 2 | AY.98.1 | 0.000097 |
S | 679 | N679N | aaT | aaC | 2 | 2 | B | 0.000256 |
S | 679 | N679N | aaT | aaC | 2 | 2 | B.1 | 0.000018 |
S | 679 | N679S | aAt | aGt | 2 | 2 | B.1 | 0.000018 |
S | 679 | N679S | aAt | aGt | 2 | 2 | B.1.1 | 0.000036 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.1.148 | 0.017544 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.1.161 | 0.007067 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.1.198 | 0.002937 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.1.306 | 0.000877 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | B.1.1.326 | 0.003521 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | B.1.1.329 | 0.007692 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.1.453 | 0.016949 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.1.464 | 0.002946 |
S | 679 | N679K | aaT | aaG | 2 | 2 | B.1.110.3 | 0.001437 |
S | 679 | N679G | AAt | GGt | 2 | 2 | B.1.177 | 0.000026 |
S | 679 | N679D | Aat | Gat | 2 | 2 | B.1.177 | 0.000026 |
S | 679 | N679del | AAT | --- | 2 | 2 | B.1.177 | 0.000026 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.177.23 | 0.006472 |
S | 679 | N679N | aaT | aaC | 2 | 2 | B.1.206 | 0.001631 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | B.1.232 | 0.001075 |
S | 679 | N679K | aaT | aaA | 1 | 2 | B.1.243 | 0.00007 |
S | 679 | N679K | aaT | aaG | 1 | 2 | B.1.243 | 0.00007 |
S | 679 | N679N | aaT | aaC | 2 | 2 | B.1.258 | 0.000133 |
S | 679 | N679S | aAt | aGt | 2 | 2 | B.1.258 | 0.000133 |
S | 679 | N679S | aAt | aGt | 2 | 2 | B.1.351 | 0.000059 |
S | 679 | N679T | aAt | aCt | 2 | 2 | B.1.351 | 0.000059 |
S | 679 | N679K | aaT | aaG | 1 | 2 | B.1.351 | 0.00003 |
S | 679 | N679K | aaT | aaA | 1 | 2 | B.1.351 | 0.00003 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | B.1.36 | 0.000292 |
S | 679 | N679del | AAT | --- | 2 | 2 | B.1.416 | 0.002538 |
S | 679 | N679K | aaT | aaG | 1 | 2 | B.1.427 | 0.00005 |
S | 679 | N679K | aaT | aaA | 1 | 2 | B.1.427 | 0.00005 |
S | 679 | N679K | aaT | aaA | 1 | 2 | B.1.456 | 0.003268 |
S | 679 | N679K | aaT | aaG | 1 | 2 | B.1.456 | 0.003268 |
S | 679 | N679del | AAT | --- | 2 | 2 | B.1.462 | 0.014493 |
S | 679 | N679del2 | aAT | a-- | 2 | 2 | B.1.462 | 0.014493 |
S | 679 | N679K | aaT | aaA | 2 | 2 | B.1.466.2 | 0.000782 |
S | 679 | N679del | AAT | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 679 | N679K | aaT | aaA | 2 | 2 | C.1 | 0.004785 |
S | 679 | N679S | aAt | aGt | 2 | 2 | C.37 | 0.000232 |
S | 679 | N679I | aAt | aTt | 2 | 2 | P.1.14 | 0.000096 |
S | 679 | N679K | aaT | aaA | 2 | 2 | P.1.15 | 0.000465 |
S | 679 | N679T | aAt | aCt | 2 | 2 | P.1.7 | 0.000639 |
S | 679 | N679Y | Aat | Tat | 2 | 2 | Q.1 | 0.000253 |
S | 679 | N679N | aaT | aaC | 1 | 1 | A | 0.000387 |
S | 679 | N679T | aAt | aCt | 1 | 1 | A | 0.000387 |
S | 679 | N679del | AAT | --- | 1 | 1 | A.1 | 0.000282 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AB.1 | 0.008197 |
S | 679 | N679E | AaT | GaA | 1 | 1 | All | 0 |
S | 679 | N679L | AAT | CTC | 1 | 1 | All | 0 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.100 | 0.000046 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.102 | 0.000027 |
S | 679 | N679D | Aat | Gat | 1 | 1 | AY.103 | 0.000006 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.104 | 0.001984 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.106 | 0.000335 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.108 | 0.001103 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.110 | 0.000113 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.111 | 0.000183 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.116 | 0.000287 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.119 | 0.000035 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.120 | 0.000037 |
S | 679 | N679D | Aat | Gat | 1 | 1 | AY.121 | 0.000135 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.14 | 0.000088 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.16 | 0.00038 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.19 | 0.00114 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.20 | 0.000039 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.23 | 0.00007 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.24 | 0.000431 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.25 | 0.000006 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | AY.25 | 0.000006 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.26 | 0.000028 |
S | 679 | N679K | aaT | aaG | 1 | 1 | AY.26 | 0.000028 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.29 | 0.000016 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.29 | 0.000016 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.29.1 | 0.000221 |
S | 679 | N679H | Aat | Cat | 1 | 1 | AY.3 | 0.00001 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.3.1 | 0.000085 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.3.1 | 0.000085 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.30 | 0.000396 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.32 | 0.000532 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.33 | 0.000067 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | AY.35 | 0.000233 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.35 | 0.000233 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.39 | 0.000025 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.39 | 0.000025 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.39.1 | 0.00004 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.39.1 | 0.00004 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.4 | 0.000002 |
S | 679 | N679H | Aat | Cat | 1 | 1 | AY.4 | 0.000002 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.4.2 | 0.000022 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.4.5 | 0.000107 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.41 | 0.000294 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.42 | 0.00004 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.43 | 0.000004 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.44 | 0.000006 |
S | 679 | N679del1 | Aat | -at | 1 | 1 | AY.44 | 0.000006 |
S | 679 | N679H | Aat | Cat | 1 | 1 | AY.44 | 0.000006 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.45 | 0.000122 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.46 | 0.000104 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.46 | 0.000104 |
S | 679 | N679del | AAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.47 | 0.000031 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | AY.5 | 0.000021 |
S | 679 | N679del | AAT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.5.4 | 0.000277 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | AY.5.4 | 0.000277 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.54 | 0.000095 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.55 | 0.000917 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.57 | 0.000656 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.58 | 0.000907 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.59 | 0.00053 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.61 | 0.000105 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.61 | 0.000105 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.61 | 0.000105 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.65 | 0.000533 |
S | 679 | N679K | aaT | aaA | 1 | 1 | AY.67 | 0.000464 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.68 | 0.000274 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.69 | 0.000187 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.70 | 0.000209 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.70 | 0.000209 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.75 | 0.000056 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.75 | 0.000056 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.75.1 | 0.00018 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.77 | 0.001127 |
S | 679 | N679del | AAT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 679 | N679T | aAt | aCt | 1 | 1 | AY.9 | 0.000068 |
S | 679 | N679D | Aat | Gat | 1 | 1 | AY.9 | 0.000068 |
S | 679 | N679N | aaT | aaC | 1 | 1 | AY.9.1 | 0.000084 |
S | 679 | N679del | AAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.92 | 0.000287 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.94 | 0.000443 |
S | 679 | N679I | aAt | aTt | 1 | 1 | AY.98 | 0.000079 |
S | 679 | N679S | aAt | aGt | 1 | 1 | AY.98 | 0.000079 |
S | 679 | N679del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | AY.99.2 | 0.000092 |
S | 679 | N679del2 | aAT | a-- | 1 | 1 | B | 0.000128 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B | 0.000128 |
S | 679 | N679G | AAt | GGt | 1 | 1 | B.1 | 0.000009 |
S | 679 | N679T | aAt | aCt | 1 | 1 | B.1 | 0.000009 |
S | 679 | N679X | AaT | TaA | 1 | 1 | B.1.1 | 0.000018 |
S | 679 | N679D | Aat | Gat | 1 | 1 | B.1.1 | 0.000018 |
S | 679 | N679E | AaT | GaA | 1 | 1 | B.1.1 | 0.000018 |
S | 679 | N679G | AAt | GGt | 1 | 1 | B.1.1 | 0.000018 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | B.1.1 | 0.000018 |
S | 679 | N679T | aAt | aCt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.117 | 0.009709 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.220 | 0.001859 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.1.231 | 0.003096 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.1.241 | 0.00207 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.243 | 0.004082 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.1.269 | 0.001353 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.277 | 0.000759 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.31 | 0.066667 |
S | 679 | N679K | aaT | aaG | 1 | 1 | B.1.1.316 | 0.000925 |
S | 679 | N679K | aaT | aaG | 1 | 1 | B.1.1.322 | 0.008772 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.1.354 | 0.004386 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.37 | 0.000193 |
S | 679 | N679D | Aat | Gat | 1 | 1 | B.1.1.37 | 0.000193 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.39 | 0.00051 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.402 | 0.011111 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.419 | 0.007407 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.432 | 0.001266 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.1.482 | 0.023256 |
S | 679 | N679K | aaT | aaG | 1 | 1 | B.1.1.486 | 0.001577 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 679 | N679T | aAt | aCt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 679 | N679H | Aat | Cat | 1 | 1 | B.1.1.519 | 0.00004 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.523 | 0.001563 |
S | 679 | N679L | AAT | CTC | 1 | 1 | B.1.1.7 | 0.000001 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.1.99 | 0.02381 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.108 | 0.005814 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.139 | 0.000733 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.158 | 0.02381 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.160 | 0.000031 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.160 | 0.000031 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.160.20 | 0.008929 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.160.32 | 0.004292 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.160.33 | 0.004425 |
S | 679 | N679K | aaT | aaG | 1 | 1 | B.1.160.9 | 0.007194 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.177 | 0.000013 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.177.21 | 0.000076 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.177.21 | 0.000076 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.177.44 | 0.000519 |
S | 679 | N679D | Aat | Gat | 1 | 1 | B.1.177.7 | 0.000165 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.177.75 | 0.001041 |
S | 679 | N679D | Aat | Gat | 1 | 1 | B.1.177.8 | 0.000752 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.177.80 | 0.001912 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.177.86 | 0.000183 |
S | 679 | N679D | Aat | Gat | 1 | 1 | B.1.177.86 | 0.000183 |
S | 679 | N679D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.2 | 0.000009 |
S | 679 | N679G | AAt | GGt | 1 | 1 | B.1.2 | 0.000009 |
S | 679 | N679D | Aat | Gat | 1 | 1 | B.1.221 | 0.000071 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.221 | 0.000071 |
S | 679 | N679G | AAt | GGt | 1 | 1 | B.1.221 | 0.000071 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.221 | 0.000071 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.243 | 0.00007 |
S | 679 | N679del2 | aAT | a-- | 1 | 1 | B.1.243 | 0.00007 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.243 | 0.00007 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | B.1.243 | 0.00007 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 679 | N679T | aAt | aCt | 1 | 1 | B.1.258 | 0.000067 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.258.14 | 0.00098 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.258.17 | 0.000104 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.284 | 0.013158 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.311 | 0.000275 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.349 | 0.000715 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.351 | 0.00003 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | B.1.351.3 | 0.000876 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.36 | 0.000146 |
S | 679 | N679del1 | Aat | -at | 1 | 1 | B.1.36 | 0.000146 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.36.29 | 0.000517 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.36.29 | 0.000517 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.36.34 | 0.021277 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.36.35 | 0.002604 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.377 | 0.004566 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.408 | 0.00369 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | B.1.422 | 0.000812 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.429 | 0.000024 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | B.1.456 | 0.003268 |
S | 679 | N679I | aAt | aTt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.466.2 | 0.000391 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.468 | 0.005714 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.497 | 0.000315 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.501 | 0.007353 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.509 | 0.000866 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.561 | 0.000397 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.575 | 0.000303 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.595 | 0.000261 |
S | 679 | N679N | aaT | aaC | 1 | 1 | B.1.596 | 0.000087 |
S | 679 | N679S | aAT | aGC | 1 | 1 | B.1.596 | 0.000087 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 679 | N679K | aaT | aaG | 1 | 1 | B.1.609 | 0.000479 |
S | 679 | N679del2 | aAT | a-- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 679 | N679T | aAt | aCt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.617.1 | 0.000129 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.618 | 0.004032 |
S | 679 | N679S | aAt | aGt | 1 | 1 | B.1.619 | 0.000871 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.1.619 | 0.000871 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 679 | N679K | aaT | aaG | 1 | 1 | B.1.633 | 0.041667 |
S | 679 | N679del | AAT | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 679 | N679K | aaT | aaG | 1 | 1 | B.1.93 | 0.000934 |
S | 679 | N679K | aaT | aaA | 1 | 1 | B.52 | 0.010101 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | B.6.8 | 0.008264 |
S | 679 | N679D | Aat | Gat | 1 | 1 | C.16 | 0.00106 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | C.18 | 0.002591 |
S | 679 | N679S | aAt | aGt | 1 | 1 | C.2 | 0.016129 |
S | 679 | N679T | aAt | aCt | 1 | 1 | C.23 | 0.005814 |
S | 679 | N679K | aaT | aaG | 1 | 1 | C.33 | 0.058824 |
S | 679 | N679K | aaT | aaA | 1 | 1 | C.35 | 0.000774 |
S | 679 | N679N | aaT | aaC | 1 | 1 | C.36.3 | 0.000567 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | C.37 | 0.000116 |
S | 679 | N679del | AAT | --- | 1 | 1 | C.37 | 0.000116 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | N.3 | 0.005814 |
S | 679 | N679K | aaT | aaA | 1 | 1 | N.5 | 0.001767 |
S | 679 | N679S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
S | 679 | N679T | aAt | aCt | 1 | 1 | P.1 | 0.000016 |
S | 679 | N679N | aaT | aaC | 1 | 1 | P.1 | 0.000016 |
S | 679 | N679del | AAT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 679 | N679S | aAt | aGt | 1 | 1 | P.1.15 | 0.000232 |
S | 679 | N679Y | Aat | Tat | 1 | 1 | P.3 | 0.001595 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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