CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 675 & Codon = caA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S675Q675QsyncaGcaA11151115123585-23587

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S675Q675QcaGcaA11151115All0.000213
S675Q675QcaGcaA407407B.1.1.70.000364
S675Q675QcaGcaA172172B.1.1600.005364
S675Q675QcaGcaA124124Q.10.015664
S675Q675QcaGcaA3939B.1.4040.050781
S675Q675QcaGcaA3636AY.40.000056
S675Q675QcaGcaA3131P.1.70.009898
S675Q675QcaGcaA3030B.1.617.20.000113
S675Q675QcaGcaA2222B.1.4270.001111
S675Q675QcaGcaA2121AY.250.000126
S675Q675QcaGcaA1919AY.440.000116
S675Q675QcaGcaA1717B.1.20.00015
S675Q675QcaGcaA1313P.10.000205
S675Q675QcaGcaA1313R.10.00117
S675Q675QcaGcaA1212AY.1000.000552
S675Q675QcaGcaA1111B.1.1770.000145
S675Q675QcaGcaA1111Q.40.005002
S675Q675QcaGcaA99B.1.3161
S675Q675QcaGcaA88B.10.000073
S675Q675QcaGcaA66B.1.4800.014925
S675Q675QcaGcaA66B.1.5960.000523
S675Q675QcaGcaA55AY.430.000022
S675Q675QcaGcaA55B.1.1.3220.04386
S675Q675QcaGcaA55B.1.1.5190.000199
S675Q675QcaGcaA55B.1.160.300.014881
S675Q675QcaGcaA44AY.1030.000025
S675Q675QcaGcaA44B.1.1.630.001543
S675Q675QcaGcaA33AY.30.00003
S675Q675QcaGcaA33AY.610.000314
S675Q675QcaGcaA33B.1.10.000054
S675Q675QcaGcaA33B.1.1.3110.001074
S675Q675QcaGcaA33B.1.4000.001287
S675Q675QcaGcaA22AY.360.000296
S675Q675QcaGcaA22AY.4.20.000043
S675Q675QcaGcaA22AY.920.000575
S675Q675QcaGcaA22AY.98.10.000097
S675Q675QcaGcaA22B.1.177.810.000379
S675Q675QcaGcaA22B.1.2100.004264
S675Q675QcaGcaA22B.1.2580.000133
S675Q675QcaGcaA22B.1.360.000292
S675Q675QcaGcaA22B.1.5090.001732
S675Q675QcaGcaA22B.1.5260.000047
S675Q675QcaGcaA22C.36.30.001134
S675Q675QcaGcaA11A.2.50.000499
S675Q675QcaGcaA11AY.1170.000085
S675Q675QcaGcaA11AY.1210.000135
S675Q675QcaGcaA11AY.260.000028
S675Q675QcaGcaA11AY.290.000016
S675Q675QcaGcaA11AY.300.000396
S675Q675QcaGcaA11AY.34.10.00051
S675Q675QcaGcaA11AY.390.000025
S675Q675QcaGcaA11AY.4.50.000107
S675Q675QcaGcaA11AY.450.000122
S675Q675QcaGcaA11AY.460.000104
S675Q675QcaGcaA11AY.470.000031
S675Q675QcaGcaA11AY.590.00053
S675Q675QcaGcaA11AY.770.001127
S675Q675QcaGcaA11AY.980.000079
S675Q675QcaGcaA11B.1.1.1760.000439
S675Q675QcaGcaA11B.1.1.2690.001353
S675Q675QcaGcaA11B.1.1.3480.000796
S675Q675QcaGcaA11B.1.1.4200.001006
S675Q675QcaGcaA11B.1.1280.000635
S675Q675QcaGcaA11B.1.1460.004237
S675Q675QcaGcaA11B.1.1470.000756
S675Q675QcaGcaA11B.1.177.600.000218
S675Q675QcaGcaA11B.1.2210.000071
S675Q675QcaGcaA11B.1.2340.000132
S675Q675QcaGcaA11B.1.2430.00007
S675Q675QcaGcaA11B.1.258.30.001675
S675Q675QcaGcaA11B.1.2600.003344
S675Q675QcaGcaA11B.1.3200.001245
S675Q675QcaGcaA11B.1.351.30.000876
S675Q675QcaGcaA11B.1.36.290.000517
S675Q675QcaGcaA11B.1.3770.004566
S675Q675QcaGcaA11B.1.4590.004082
S675Q675QcaGcaA11B.1.4680.005714
S675Q675QcaGcaA11B.1.5510.00129
S675Q675QcaGcaA11B.1.5950.000261
S675Q675QcaGcaA11B.1.617.10.000129
S675Q675QcaGcaA11B.1.6200.000946
S675Q675QcaGcaA11B.1.6370.000073
S675Q675QcaGcaA11C.140.004329
S675Q675QcaGcaA11C.37.10.002618
S675Q675QcaGcaA11D.20.000075
S675Q675QcaGcaA11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.