CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 675 & Codon = cGg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S675Q675RnonsyncAgcGg293129230.99727123585-23587

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S675Q675RcAgcGg29232931All0.000559
S675Q675RcAgcGg17281730B.1.1.3170.711404
S675Q675RcAgcGg379379B.1.30.992147
S675Q675RcAgcGg105106B.10.000962
S675Q675RcAgcGg8282B.1.1.4610.987952
S675Q675RcAgcGg6464AS.21
S675Q675RcAgcGg5858AY.200.002254
S675Q675RcAgcGg5656B.1.10.001016
S675Q675RcAgcGg4444AY.40.000068
S675Q675RcAgcGg4242B.1.1.70.000038
S675Q675RcAgcGg3939A.20.025811
S675Q675RcAgcGg3333B.1.20.000291
S675Q675RcAgcGg2222B.1.1.630.008488
S675Q675RcAgcGg2121AY.1030.00013
S675Q675RcAgcGg2121AY.430.000093
S675Q675RcAgcGg1414B.1.4690.050542
S675Q675RcAgcGg1014P.10.000158
S675Q675RcAgcGg1212B.1.36.290.006208
S675Q675RcAgcGg1111AY.4.20.000239
S675Q675RcAgcGg1010B.1.1.250.005685
S675Q675RcAgcGg99B.1.4710.02459
S675Q675RcAgcGg88B.1.160.260.01937
S675Q675RcAgcGg88B.40.01766
S675Q675RcAgcGg66B.1.617.20.000023
S675Q675RcAgcGg66C.140.025974
S675Q675RcAgcGg55AY.1020.000133
S675Q675RcAgcGg55B.1.2400.001078
S675Q675RcAgcGg55B.1.360.00073
S675Q675RcAgcGg55B.1.4270.000252
S675Q675RcAgcGg44AY.250.000024
S675Q675RcAgcGg44B.1.3200.004981
S675Q675RcAgcGg44B.1.4290.000094
S675Q675RcAgcGg44B.1.5260.000094
S675Q675RcAgcGg44C.370.000464
S675Q675RcAgcGg33AY.1040.005952
S675Q675RcAgcGg33B.1.1.3260.005282
S675Q675RcAgcGg33B.1.1770.00004
S675Q675RcAgcGg33B.1.6380.157895
S675Q675RcAgcGg33P.1.140.000143
S675Q675RcAgcGg33P.1.170.000485
S675Q675RcAgcGg22A.210.00554
S675Q675RcAgcGg22AY.1200.000074
S675Q675RcAgcGg22AY.300.000791
S675Q675RcAgcGg22AY.320.001065
S675Q675RcAgcGg22AY.460.000208
S675Q675RcAgcGg22AY.610.00021
S675Q675RcAgcGg22B.1.1.1610.007067
S675Q675RcAgcGg22B.1.1.3700.025316
S675Q675RcAgcGg22B.1.1.4090.005666
S675Q675RcAgcGg22B.1.1.5210.010695
S675Q675RcAgcGg22B.1.1.830.00542
S675Q675RcAgcGg22B.1.1600.000062
S675Q675RcAgcGg22B.1.2430.000139
S675Q675RcAgcGg22B.1.3240.00321
S675Q675RcAgcGg22B.1.36.390.004435
S675Q675RcAgcGg22B.1.4590.008163
S675Q675RcAgcGg11A0.000387
S675Q675RcAgcGg11A.50.001923
S675Q675RcAgcGg11AY.1080.001103
S675Q675RcAgcGg11AY.1130.000142
S675Q675RcAgcGg11AY.120.20.001285
S675Q675RcAgcGg11AY.16.10.00047
S675Q675RcAgcGg11AY.230.00007
S675Q675RcAgcGg11AY.30.00001
S675Q675RcAgcGg11AY.360.000148
S675Q675RcAgcGg11AY.420.00004
S675Q675RcAgcGg11AY.440.000006
S675Q675RcAgcGg11AY.830.001724
S675Q675RcAgcGg11B.1.1.100.001115
S675Q675RcAgcGg11B.1.1.2000.007463
S675Q675RcAgcGg11B.1.1.2160.00089
S675Q675RcAgcGg11B.1.1.2220.000204
S675Q675RcAgcGg11B.1.1.280.000311
S675Q675RcAgcGg11B.1.1.3190.017544
S675Q675RcAgcGg11B.1.1.3490.010309
S675Q675RcAgcGg11B.1.1.3720.000689
S675Q675RcAgcGg11B.1.1.3730.02381
S675Q675RcAgcGg11B.1.1.4340.000349
S675Q675RcAgcGg11B.1.1.500.000679
S675Q675RcAgcGg11B.1.1.570.011494
S675Q675RcAgcGg11B.1.1390.000733
S675Q675RcAgcGg11B.1.177.120.000152
S675Q675RcAgcGg11B.1.177.600.000218
S675Q675RcAgcGg11B.1.177.70.000165
S675Q675RcAgcGg11B.1.177.810.000189
S675Q675RcAgcGg11B.1.177.860.000183
S675Q675RcAgcGg11B.1.2600.003344
S675Q675RcAgcGg11B.1.3510.00003
S675Q675RcAgcGg11B.1.36.360.000602
S675Q675RcAgcGg11B.1.4010.008197
S675Q675RcAgcGg11B.1.4680.005714
S675Q675RcAgcGg11B.1.5580.004566
S675Q675RcAgcGg11B.1.575.10.002439
S675Q675RcAgcGg11B.1.6210.000089
S675Q675RcAgcGg11B.1.6370.000073
S675Q675RcAgcGg11B.6.60.000889
S675Q675RcAgcGg11D.20.000075
S675Q675RcAgcGg11N.40.004255
S675Q675RcAgcGg11P.1.120.000484
S675Q675RcAgcGg11P.20.000187
S675Q675RcAgcGg11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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