CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 67 | A67V | nonsyn | gCt | gTt | 19793 | 19783 | 0.999495 | 21761-21763 | |
S | 67 | A67V | nonsyn | gCT | gTA | 19793 | 6 | 0.000303137 | 21761-21763 | |
S | 67 | A67V | nonsyn | gCT | gTC | 19793 | 2 | 0.000101046 | 21761-21763 | |
S | 67 | A67V | nonsyn | gCT | gTG | 19793 | 2 | 0.000101046 | 21761-21763 | |
S | 67 | A67S | nonsyn | Gct | Tct | 5358 | 5349 | 0.99832 | 21761-21763 | |
S | 67 | A67S | nonsyn | GcT | TcA | 5358 | 5 | 0.000933184 | 21761-21763 | |
S | 67 | A67S | nonsyn | GCt | AGt | 5358 | 2 | 0.000373274 | 21761-21763 | |
S | 67 | A67S | nonsyn | GcT | TcC | 5358 | 1 | 0.000186637 | 21761-21763 | |
S | 67 | A67S | nonsyn | GcT | TcG | 5358 | 1 | 0.000186637 | 21761-21763 | |
S | 67 | A67A | syn | gcT | gcC | 1420 | 1369 | 0.964085 | 21761-21763 | |
S | 67 | A67A | syn | gcT | gcA | 1420 | 39 | 0.0274648 | 21761-21763 | |
S | 67 | A67A | syn | gcT | gcG | 1420 | 12 | 0.0084507 | 21761-21763 | |
S | 67 | A67del | del | GCT | --- | 1313 | 1313 | 1 | 21761-21763 | |
S | 67 | A67D | nonsyn | gCt | gAt | 280 | 280 | 1 | 21761-21763 | |
S | 67 | A67del1 | del | gcT | gc- | 187 | 157 | 0.839572 | 21761-21763 | |
S | 67 | A67del1 | del | gCT | gT- | 187 | 15 | 0.0802139 | 21761-21763 | |
S | 67 | A67del1 | del | GCT | -NN | 187 | 4 | 0.0213904 | 21761-21763 | |
S | 67 | A67del1 | del | Gct | -ct | 187 | 4 | 0.0213904 | 21761-21763 | |
S | 67 | A67del1 | del | GCT | -YW | 187 | 2 | 0.0106952 | 21761-21763 | |
S | 67 | A67del1 | del | gCt | g-t | 187 | 1 | 0.00534759 | 21761-21763 | |
S | 67 | A67del1 | del | GCt | -At | 187 | 1 | 0.00534759 | 21761-21763 | |
S | 67 | A67del1 | del | GCT | KB- | 187 | 1 | 0.00534759 | 21761-21763 | |
S | 67 | A67del1 | del | GcT | Nc- | 187 | 1 | 0.00534759 | 21761-21763 | |
S | 67 | A67del1 | del | GcT | -cN | 187 | 1 | 0.00534759 | 21761-21763 | |
S | 67 | A67T | nonsyn | Gct | Act | 139 | 136 | 0.978417 | 21761-21763 | |
S | 67 | A67T | nonsyn | GcT | AcG | 139 | 2 | 0.0143885 | 21761-21763 | |
S | 67 | A67T | nonsyn | GcT | AcA | 139 | 1 | 0.00719424 | 21761-21763 | |
S | 67 | A67G | nonsyn | gCt | gGt | 33 | 30 | 0.909091 | 21761-21763 | |
S | 67 | A67G | nonsyn | gCT | gGG | 33 | 2 | 0.0606061 | 21761-21763 | |
S | 67 | A67G | nonsyn | gCT | gGA | 33 | 1 | 0.030303 | 21761-21763 | |
S | 67 | A67P | nonsyn | Gct | Cct | 32 | 30 | 0.9375 | 21761-21763 | |
S | 67 | A67P | nonsyn | GcT | CcG | 32 | 2 | 0.0625 | 21761-21763 | |
S | 67 | A67del2 | del | GCt | --t | 13 | 8 | 0.615385 | 21761-21763 | |
S | 67 | A67del2 | del | gCT | g-- | 13 | 4 | 0.307692 | 21761-21763 | |
S | 67 | A67del2 | del | GCT | A-- | 13 | 1 | 0.0769231 | 21761-21763 | |
S | 67 | A67F | nonsyn | GCt | TTt | 8 | 8 | 1 | 21761-21763 | |
S | 67 | A67L | nonsyn | GCT | TTA | 7 | 4 | 0.571429 | 21761-21763 | |
S | 67 | A67L | nonsyn | GCt | CTt | 7 | 1 | 0.142857 | 21761-21763 | |
S | 67 | A67L | nonsyn | GCT | TTG | 7 | 1 | 0.142857 | 21761-21763 | |
S | 67 | A67L | nonsyn | GCT | CTG | 7 | 1 | 0.142857 | 21761-21763 | |
S | 67 | A67Y | nonsyn | GCt | TAt | 2 | 2 | 1 | 21761-21763 | |
S | 67 | A67N | nonsyn | GCt | AAt | 2 | 1 | 0.5 | 21761-21763 | |
S | 67 | A67N | nonsyn | GCT | AAC | 2 | 1 | 0.5 | 21761-21763 | |
S | 67 | A67K | nonsyn | GCT | AAA | 1 | 1 | 1 | 21761-21763 | |
S | 67 | A67X | nonsyn | GCT | TGA | 1 | 1 | 1 | 21761-21763 | |
S | 67 | A67C | nonsyn | GCt | TGt | 1 | 1 | 1 | 21761-21763 | |
S | 67 | A67M | nonsyn | GCT | ATG | 1 | 1 | 1 | 21761-21763 | |
S | 67 | A67E | nonsyn | gCT | gAG | 1 | 1 | 1 | 21761-21763 | |
S | 67 | A67H | nonsyn | GCt | CAt | 1 | 1 | 1 | 21761-21763 | |
S | 67 | A67R | nonsyn | GCT | AGG | 1 | 1 | 1 | 21761-21763 | |
S | 67 | A67W | nonsyn | GCT | TGG | 1 | 1 | 1 | 21761-21763 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 67 | A67V | gCt | gTt | 19783 | 19793 | All | 0.003784 |
S | 67 | A67V | gCT | gTA | 6 | 19793 | All | 0.000001 |
S | 67 | A67V | gCT | gTG | 2 | 19793 | All | 0 |
S | 67 | A67V | gCT | gTC | 2 | 19793 | All | 0 |
S | 67 | A67V | gCt | gTt | 8543 | 8545 | B.1.525 | 0.966731 |
S | 67 | A67V | gCT | gTG | 1 | 8545 | B.1.525 | 0.000113 |
S | 67 | A67V | gCT | gTC | 1 | 8545 | B.1.525 | 0.000113 |
S | 67 | A67S | Gct | Tct | 5349 | 5358 | All | 0.001023 |
S | 67 | A67S | GcT | TcA | 5 | 5358 | All | 0.000001 |
S | 67 | A67S | GCt | AGt | 2 | 5358 | All | 0 |
S | 67 | A67S | GcT | TcC | 1 | 5358 | All | 0 |
S | 67 | A67S | GcT | TcG | 1 | 5358 | All | 0 |
S | 67 | A67V | gCt | gTt | 2211 | 2212 | B.1.1.7 | 0.001979 |
S | 67 | A67V | gCT | gTA | 1 | 2212 | B.1.1.7 | 0.000001 |
S | 67 | A67V | gCt | gTt | 1953 | 1953 | AY.6 | 0.080324 |
S | 67 | A67S | Gct | Tct | 1878 | 1878 | AY.43 | 0.00832 |
S | 67 | A67V | gCt | gTt | 1601 | 1601 | AY.9.2 | 0.058804 |
S | 67 | A67A | gcT | gcC | 1369 | 1420 | All | 0.000262 |
S | 67 | A67A | gcT | gcA | 39 | 1420 | All | 0.000007 |
S | 67 | A67A | gcT | gcG | 12 | 1420 | All | 0.000002 |
S | 67 | A67V | gCt | gTt | 1321 | 1322 | AY.4 | 0.002056 |
S | 67 | A67V | gCT | gTC | 1 | 1322 | AY.4 | 0.000002 |
S | 67 | A67del | GCT | --- | 1313 | 1313 | All | 0.000251 |
S | 67 | A67S | Gct | Tct | 1053 | 1053 | B.1.1.7 | 0.000943 |
S | 67 | A67A | gcT | gcC | 1039 | 1051 | B.1.1.7 | 0.00093 |
S | 67 | A67A | gcT | gcA | 12 | 1051 | B.1.1.7 | 0.000011 |
S | 67 | A67S | Gct | Tct | 591 | 591 | AY.4 | 0.00092 |
S | 67 | A67V | gCt | gTt | 470 | 470 | B.1.351.3 | 0.411919 |
S | 67 | A67V | gCt | gTt | 350 | 350 | B.1.617.2 | 0.001318 |
S | 67 | A67V | gCt | gTt | 340 | 340 | B.1.258.22 | 0.906667 |
S | 67 | A67V | gCt | gTt | 338 | 338 | AY.26 | 0.009569 |
S | 67 | A67del | GCT | --- | 282 | 282 | C.37 | 0.03273 |
S | 67 | A67D | gCt | gAt | 280 | 280 | All | 0.000054 |
S | 67 | A67S | Gct | Tct | 236 | 236 | B.1.617.2 | 0.000889 |
S | 67 | A67D | gCt | gAt | 211 | 211 | B.1.1.7 | 0.000189 |
S | 67 | A67del1 | gcT | gc- | 157 | 187 | All | 0.00003 |
S | 67 | A67del1 | gCT | gT- | 15 | 187 | All | 0.000003 |
S | 67 | A67del1 | GCT | -NN | 4 | 187 | All | 0.000001 |
S | 67 | A67del1 | Gct | -ct | 4 | 187 | All | 0.000001 |
S | 67 | A67del1 | GCT | -YW | 2 | 187 | All | 0 |
S | 67 | A67del1 | GCT | KB- | 1 | 187 | All | 0 |
S | 67 | A67del1 | GcT | Nc- | 1 | 187 | All | 0 |
S | 67 | A67del1 | GCt | -At | 1 | 187 | All | 0 |
S | 67 | A67del1 | GcT | -cN | 1 | 187 | All | 0 |
S | 67 | A67del1 | gCt | g-t | 1 | 187 | All | 0 |
S | 67 | A67V | gCt | gTt | 171 | 171 | B.1.177 | 0.002252 |
S | 67 | A67del | GCT | --- | 167 | 167 | B.1.626 | 0.954286 |
S | 67 | A67A | gcT | gcC | 152 | 154 | AY.4 | 0.000237 |
S | 67 | A67A | gcT | gcA | 2 | 154 | AY.4 | 0.000003 |
S | 67 | A67V | gCt | gTt | 154 | 154 | AY.44 | 0.000937 |
S | 67 | A67V | gCt | gTt | 141 | 141 | B.1.2 | 0.001242 |
S | 67 | A67T | Gct | Act | 136 | 139 | All | 0.000026 |
S | 67 | A67T | GcT | AcG | 2 | 139 | All | 0 |
S | 67 | A67T | GcT | AcA | 1 | 139 | All | 0 |
S | 67 | A67del1 | gcT | gc- | 123 | 127 | B.1.1.7 | 0.00011 |
S | 67 | A67del1 | gCT | gT- | 4 | 127 | B.1.1.7 | 0.000004 |
S | 67 | A67S | Gct | Tct | 124 | 126 | P.1 | 0.001953 |
S | 67 | A67S | GcT | TcA | 2 | 126 | P.1 | 0.000032 |
S | 67 | A67V | gCt | gTt | 123 | 123 | AY.103 | 0.000764 |
S | 67 | A67S | Gct | Tct | 123 | 123 | B.1.541 | 0.544248 |
S | 67 | A67V | gCt | gTt | 107 | 107 | AY.25 | 0.000644 |
S | 67 | A67V | gCt | gTt | 104 | 104 | B.1 | 0.000953 |
S | 67 | A67del | GCT | --- | 101 | 101 | AY.43 | 0.000447 |
S | 67 | A67V | gCt | gTt | 98 | 98 | AY.43 | 0.000434 |
S | 67 | A67del | GCT | --- | 98 | 98 | B.1.1.7 | 0.000088 |
S | 67 | A67V | gCt | gTt | 84 | 84 | AY.36 | 0.01245 |
S | 67 | A67del | GCT | --- | 80 | 80 | B.1.617.2 | 0.000301 |
S | 67 | A67S | Gct | Tct | 74 | 74 | B.1.1.50 | 0.050238 |
S | 67 | A67V | gCt | gTt | 72 | 72 | B.1.427 | 0.003636 |
S | 67 | A67S | Gct | Tct | 71 | 71 | B.1.177.7 | 0.011705 |
S | 67 | A67S | Gct | Tct | 69 | 69 | AY.25 | 0.000415 |
S | 67 | A67S | Gct | Tct | 68 | 68 | AY.103 | 0.000422 |
S | 67 | A67V | gCt | gTt | 64 | 64 | B.1.1 | 0.001161 |
S | 67 | A67del | GCT | --- | 61 | 61 | AY.4 | 0.000095 |
S | 67 | A67V | gCt | gTt | 60 | 60 | Q.2 | 0.03681 |
S | 67 | A67S | Gct | Tct | 58 | 58 | B.1.177 | 0.000764 |
S | 67 | A67V | gCt | gTt | 57 | 57 | B.1.351 | 0.001694 |
S | 67 | A67A | gcT | gcC | 53 | 55 | AY.44 | 0.000323 |
S | 67 | A67A | gcT | gcA | 2 | 55 | AY.44 | 0.000012 |
S | 67 | A67V | gCt | gTt | 54 | 54 | B.1.1.519 | 0.002144 |
S | 67 | A67V | gCt | gTt | 53 | 53 | AY.3 | 0.000527 |
S | 67 | A67V | gCt | gTt | 52 | 52 | AY.109 | 0.038462 |
S | 67 | A67S | Gct | Tct | 49 | 49 | B.1.1 | 0.000889 |
S | 67 | A67V | gCt | gTt | 47 | 47 | AY.14 | 0.004137 |
S | 67 | A67S | Gct | Tct | 47 | 47 | AY.9.2 | 0.001726 |
S | 67 | A67del | GCT | --- | 46 | 46 | AY.44 | 0.00028 |
S | 67 | A67S | Gct | Tct | 41 | 41 | AY.113 | 0.005838 |
S | 67 | A67del | GCT | --- | 41 | 41 | AY.25 | 0.000247 |
S | 67 | A67S | Gct | Tct | 40 | 41 | B.1.2 | 0.000352 |
S | 67 | A67S | GCt | AGt | 1 | 41 | B.1.2 | 0.000009 |
S | 67 | A67V | gCt | gTt | 36 | 36 | AY.4.2 | 0.000781 |
S | 67 | A67S | Gct | Tct | 36 | 36 | AY.9.1 | 0.003014 |
S | 67 | A67V | gCt | gTt | 35 | 35 | B.1.429 | 0.000824 |
S | 67 | A67del | GCT | --- | 34 | 34 | AY.9 | 0.002298 |
S | 67 | A67G | gCt | gGt | 30 | 33 | All | 0.000006 |
S | 67 | A67G | gCT | gGG | 2 | 33 | All | 0 |
S | 67 | A67G | gCT | gGA | 1 | 33 | All | 0 |
S | 67 | A67V | gCt | gTt | 33 | 33 | B.1.526 | 0.000776 |
S | 67 | A67P | Gct | Cct | 30 | 32 | All | 0.000006 |
S | 67 | A67P | GcT | CcG | 2 | 32 | All | 0 |
S | 67 | A67S | Gct | Tct | 31 | 31 | B.1 | 0.000284 |
S | 67 | A67S | Gct | Tct | 30 | 30 | B.1.1.214 | 0.001664 |
S | 67 | A67S | Gct | Tct | 29 | 29 | AY.102 | 0.000769 |
S | 67 | A67S | Gct | Tct | 29 | 29 | B.1.596 | 0.002527 |
S | 67 | A67A | gcT | gcC | 27 | 27 | B.1.258 | 0.001797 |
S | 67 | A67V | gCt | gTt | 27 | 27 | B.1.438.1 | 0.002896 |
S | 67 | A67V | gCt | gTt | 26 | 26 | AY.102 | 0.000689 |
S | 67 | A67V | gCt | gTt | 26 | 26 | AY.27 | 0.001683 |
S | 67 | A67S | Gct | Tct | 26 | 26 | AY.5 | 0.000537 |
S | 67 | A67S | Gct | Tct | 25 | 25 | AY.26 | 0.000708 |
S | 67 | A67V | gCt | gTt | 25 | 25 | AY.75 | 0.001401 |
S | 67 | A67V | gCt | gTt | 25 | 25 | B.1.177.53 | 0.059809 |
S | 67 | A67V | gCt | gTt | 25 | 25 | B.1.596 | 0.002178 |
S | 67 | A67V | gCt | gTt | 23 | 23 | B.1.1.368 | 0.070988 |
S | 67 | A67V | gCt | gTt | 23 | 23 | B.1.160 | 0.000717 |
S | 67 | A67V | gCt | gTt | 22 | 22 | AY.119 | 0.000777 |
S | 67 | A67S | Gct | Tct | 22 | 22 | B.1.1.277 | 0.016692 |
S | 67 | A67S | Gct | Tct | 21 | 21 | AY.20 | 0.000816 |
S | 67 | A67S | Gct | Tct | 21 | 21 | AY.3.1 | 0.00179 |
S | 67 | A67T | Gct | Act | 21 | 21 | B.1.2 | 0.000185 |
S | 67 | A67V | gCt | gTt | 18 | 21 | P.1 | 0.000284 |
S | 67 | A67V | gCT | gTA | 3 | 21 | P.1 | 0.000047 |
S | 67 | A67S | Gct | Tct | 20 | 20 | AY.3 | 0.000199 |
S | 67 | A67V | gCt | gTt | 20 | 20 | AY.5 | 0.000413 |
S | 67 | A67del | GCT | --- | 19 | 19 | AY.103 | 0.000118 |
S | 67 | A67S | Gct | Tct | 19 | 19 | AY.119 | 0.000671 |
S | 67 | A67V | gCt | gTt | 19 | 19 | AY.20 | 0.000738 |
S | 67 | A67del | GCT | --- | 19 | 19 | AY.3 | 0.000189 |
S | 67 | A67V | gCt | gTt | 19 | 19 | AY.47 | 0.000591 |
S | 67 | A67S | Gct | Tct | 19 | 19 | B.1.427 | 0.000959 |
S | 67 | A67S | Gct | Tct | 19 | 19 | P.1.10 | 0.00512 |
S | 67 | A67T | Gct | Act | 18 | 18 | B.1.1.7 | 0.000016 |
S | 67 | A67V | gCt | gTt | 18 | 18 | C.37 | 0.002089 |
S | 67 | A67del | GCT | --- | 17 | 17 | AY.102 | 0.000451 |
S | 67 | A67V | gCt | gTt | 17 | 17 | AY.39 | 0.00042 |
S | 67 | A67S | Gct | Tct | 17 | 17 | AY.46.4 | 0.002797 |
S | 67 | A67V | gCt | gTt | 17 | 17 | B.1.351.2 | 0.005144 |
S | 67 | A67T | Gct | Act | 16 | 16 | AY.33 | 0.001068 |
S | 67 | A67V | gCt | gTt | 16 | 16 | AY.53 | 0.0046 |
S | 67 | A67V | gCt | gTt | 16 | 16 | B.1.243 | 0.001113 |
S | 67 | A67S | Gct | Tct | 16 | 16 | B.1.258.17 | 0.001664 |
S | 67 | A67S | Gct | Tct | 16 | 16 | B.1.351 | 0.000476 |
S | 67 | A67V | gCt | gTt | 16 | 16 | R.1 | 0.00144 |
S | 67 | A67T | Gct | Act | 15 | 15 | B.1.1.519 | 0.000596 |
S | 67 | A67S | Gct | Tct | 14 | 14 | AY.39 | 0.000346 |
S | 67 | A67del | GCT | --- | 14 | 14 | B.1.1 | 0.000254 |
S | 67 | A67G | gCt | gGt | 13 | 14 | B.1.1.7 | 0.000012 |
S | 67 | A67G | gCT | gGG | 1 | 14 | B.1.1.7 | 0.000001 |
S | 67 | A67del | GCT | --- | 14 | 14 | B.1.177 | 0.000184 |
S | 67 | A67del2 | GCt | --t | 8 | 13 | All | 0.000002 |
S | 67 | A67del2 | gCT | g-- | 4 | 13 | All | 0.000001 |
S | 67 | A67del2 | GCT | A-- | 1 | 13 | All | 0 |
S | 67 | A67V | gCt | gTt | 13 | 13 | AY.46 | 0.001353 |
S | 67 | A67V | gCt | gTt | 13 | 13 | B.1.258 | 0.000865 |
S | 67 | A67V | gCt | gTt | 13 | 13 | B.1.621 | 0.001151 |
S | 67 | A67A | gcT | gcC | 12 | 12 | AY.118 | 0.000752 |
S | 67 | A67V | gCt | gTt | 12 | 12 | AY.3.1 | 0.001023 |
S | 67 | A67V | gCt | gTt | 12 | 12 | AY.45 | 0.00146 |
S | 67 | A67V | gCt | gTt | 11 | 11 | AY.100 | 0.000506 |
S | 67 | A67A | gcT | gcC | 9 | 11 | AY.103 | 0.000056 |
S | 67 | A67A | gcT | gcA | 2 | 11 | AY.103 | 0.000012 |
S | 67 | A67V | gCt | gTt | 11 | 11 | AY.29 | 0.000174 |
S | 67 | A67S | Gct | Tct | 11 | 11 | AY.29 | 0.000174 |
S | 67 | A67del | GCT | --- | 11 | 11 | AY.34.1 | 0.005609 |
S | 67 | A67S | Gct | Tct | 11 | 11 | AY.44 | 0.000067 |
S | 67 | A67S | Gct | Tct | 11 | 11 | AY.46 | 0.001145 |
S | 67 | A67del | GCT | --- | 11 | 11 | AY.5 | 0.000227 |
S | 67 | A67V | gCt | gTt | 11 | 11 | AY.61 | 0.001153 |
S | 67 | A67V | gCt | gTt | 11 | 11 | AY.62 | 0.004793 |
S | 67 | A67V | gCt | gTt | 11 | 11 | AY.98 | 0.000869 |
S | 67 | A67S | Gct | Tct | 11 | 11 | B.1.1.186 | 0.037801 |
S | 67 | A67V | gCt | gTt | 11 | 11 | B.1.234 | 0.001451 |
S | 67 | A67S | Gct | Tct | 11 | 11 | P.1.15 | 0.002556 |
S | 67 | A67V | gCt | gTt | 10 | 10 | AY.120 | 0.000372 |
S | 67 | A67del | GCT | --- | 10 | 10 | AY.26 | 0.000283 |
S | 67 | A67V | gCt | gTt | 10 | 10 | AY.30 | 0.003957 |
S | 67 | A67V | gCt | gTt | 10 | 10 | AY.42 | 0.000402 |
S | 67 | A67del | GCT | --- | 10 | 10 | AY.45 | 0.001217 |
S | 67 | A67S | Gct | Tct | 10 | 10 | AY.9 | 0.000676 |
S | 67 | A67S | Gct | Tct | 10 | 10 | B.1.1.25 | 0.005685 |
S | 67 | A67V | gCt | gTt | 10 | 10 | B.1.551 | 0.012903 |
S | 67 | A67V | gCt | gTt | 9 | 9 | AY.113 | 0.001282 |
S | 67 | A67S | Gct | Tct | 9 | 9 | AY.4.2 | 0.000195 |
S | 67 | A67del | GCT | --- | 9 | 9 | AY.4.5 | 0.000967 |
S | 67 | A67del | GCT | --- | 9 | 9 | B.1 | 0.000082 |
S | 67 | A67V | gCt | gTt | 9 | 9 | B.1.1.318 | 0.002716 |
S | 67 | A67S | Gct | Tct | 9 | 9 | B.1.1.519 | 0.000357 |
S | 67 | A67V | gCt | gTt | 9 | 9 | B.1.177.81 | 0.001704 |
S | 67 | A67S | Gct | Tct | 9 | 9 | B.1.258 | 0.000599 |
S | 67 | A67del | GCT | --- | 9 | 9 | B.1.429 | 0.000212 |
S | 67 | A67F | GCt | TTt | 8 | 8 | All | 0.000002 |
S | 67 | A67D | gCt | gAt | 8 | 8 | AY.103 | 0.00005 |
S | 67 | A67V | gCt | gTt | 8 | 8 | AY.35 | 0.001864 |
S | 67 | A67del | GCT | --- | 8 | 8 | AY.47 | 0.000249 |
S | 67 | A67S | Gct | Tct | 8 | 8 | AY.6 | 0.000329 |
S | 67 | A67V | gCt | gTt | 8 | 8 | AY.9 | 0.000541 |
S | 67 | A67del | GCT | --- | 8 | 8 | AY.98 | 0.000632 |
S | 67 | A67V | gCt | gTt | 8 | 8 | B.1.177.4 | 0.001688 |
S | 67 | A67del | GCT | --- | 8 | 8 | B.1.177.86 | 0.001468 |
S | 67 | A67del | GCT | --- | 8 | 8 | B.1.2 | 0.00007 |
S | 67 | A67S | Gct | Tct | 8 | 8 | B.1.526 | 0.000188 |
S | 67 | A67S | Gct | Tct | 8 | 8 | C.36.3 | 0.004538 |
S | 67 | A67A | gcT | gcC | 4 | 8 | P.1 | 0.000063 |
S | 67 | A67A | gcT | gcA | 3 | 8 | P.1 | 0.000047 |
S | 67 | A67A | gcT | gcG | 1 | 8 | P.1 | 0.000016 |
S | 67 | A67L | GCT | TTA | 4 | 7 | All | 0.000001 |
S | 67 | A67L | GCT | CTG | 1 | 7 | All | 0 |
S | 67 | A67L | GCT | TTG | 1 | 7 | All | 0 |
S | 67 | A67L | GCt | CTt | 1 | 7 | All | 0 |
S | 67 | A67D | gCt | gAt | 7 | 7 | AY.25 | 0.000042 |
S | 67 | A67V | gCt | gTt | 7 | 7 | AY.32 | 0.003727 |
S | 67 | A67V | gCt | gTt | 7 | 7 | AY.33 | 0.000467 |
S | 67 | A67del | GCT | --- | 7 | 7 | AY.42 | 0.000282 |
S | 67 | A67D | gCt | gAt | 7 | 7 | AY.43 | 0.000031 |
S | 67 | A67A | gcT | gcC | 6 | 7 | AY.43 | 0.000027 |
S | 67 | A67A | gcT | gcA | 1 | 7 | AY.43 | 0.000004 |
S | 67 | A67V | gCt | gTt | 7 | 7 | AY.5.4 | 0.001937 |
S | 67 | A67V | gCt | gTt | 7 | 7 | AY.7.1 | 0.000789 |
S | 67 | A67V | gCt | gTt | 7 | 7 | AY.9.1 | 0.000586 |
S | 67 | A67S | Gct | Tct | 7 | 7 | AY.96 | 0.014523 |
S | 67 | A67S | Gct | Tct | 7 | 7 | AY.99.2 | 0.000645 |
S | 67 | A67del | GCT | --- | 7 | 7 | B.1.160 | 0.000218 |
S | 67 | A67V | gCt | gTt | 7 | 7 | B.1.177.73 | 0.003964 |
S | 67 | A67V | gCt | gTt | 7 | 7 | B.1.177.86 | 0.001284 |
S | 67 | A67A | gcT | gcA | 4 | 7 | B.1.2 | 0.000035 |
S | 67 | A67A | gcT | gcC | 3 | 7 | B.1.2 | 0.000026 |
S | 67 | A67V | gCt | gTt | 7 | 7 | B.1.362 | 0.010786 |
S | 67 | A67A | gcT | gcA | 3 | 7 | B.1.427 | 0.000151 |
S | 67 | A67A | gcT | gcG | 2 | 7 | B.1.427 | 0.000101 |
S | 67 | A67A | gcT | gcC | 2 | 7 | B.1.427 | 0.000101 |
S | 67 | A67V | gCt | gTt | 7 | 7 | B.1.588 | 0.006369 |
S | 67 | A67V | gCt | gTt | 7 | 7 | B.1.617.1 | 0.000903 |
S | 67 | A67S | Gct | Tct | 7 | 7 | B.1.91 | 0.014523 |
S | 67 | A67del | GCT | --- | 7 | 7 | P.1 | 0.00011 |
S | 67 | A67S | Gct | Tct | 7 | 7 | Q.8 | 0.001154 |
S | 67 | A67del | GCT | --- | 6 | 6 | AY.100 | 0.000276 |
S | 67 | A67del | GCT | --- | 6 | 6 | AY.101 | 0.002943 |
S | 67 | A67V | gCt | gTt | 6 | 6 | AY.114 | 0.001387 |
S | 67 | A67del | GCT | --- | 6 | 6 | AY.121 | 0.000812 |
S | 67 | A67S | Gct | Tct | 6 | 6 | AY.23 | 0.000418 |
S | 67 | A67A | gcT | gcC | 6 | 6 | AY.23 | 0.000418 |
S | 67 | A67V | gCt | gTt | 6 | 6 | AY.34.1 | 0.00306 |
S | 67 | A67V | gCt | gTt | 6 | 6 | AY.39.1 | 0.000238 |
S | 67 | A67D | gCt | gAt | 6 | 6 | AY.4 | 0.000009 |
S | 67 | A67V | gCt | gTt | 6 | 6 | AY.54 | 0.000572 |
S | 67 | A67V | gCt | gTt | 6 | 6 | AY.91 | 0.004383 |
S | 67 | A67V | gCt | gTt | 6 | 6 | AY.99.2 | 0.000553 |
S | 67 | A67del1 | gcT | gc- | 3 | 6 | B.1 | 0.000027 |
S | 67 | A67del1 | gCT | gT- | 2 | 6 | B.1 | 0.000018 |
S | 67 | A67del1 | GCT | -YW | 1 | 6 | B.1 | 0.000009 |
S | 67 | A67V | gCt | gTt | 6 | 6 | B.1.1.263 | 0.009346 |
S | 67 | A67S | Gct | Tct | 5 | 6 | B.1.1.28 | 0.001556 |
S | 67 | A67S | GcT | TcA | 1 | 6 | B.1.1.28 | 0.000311 |
S | 67 | A67V | gCt | gTt | 6 | 6 | B.1.1.312 | 0.011472 |
S | 67 | A67S | Gct | Tct | 6 | 6 | B.1.160 | 0.000187 |
S | 67 | A67V | gCt | gTt | 6 | 6 | B.1.177.44 | 0.003114 |
S | 67 | A67V | gCt | gTt | 6 | 6 | B.1.177.60 | 0.001311 |
S | 67 | A67V | gCt | gTt | 6 | 6 | B.1.258.14 | 0.005882 |
S | 67 | A67V | gCt | gTt | 6 | 6 | B.1.36 | 0.000875 |
S | 67 | A67V | gCt | gTt | 6 | 6 | B.1.36.29 | 0.003104 |
S | 67 | A67S | Gct | Tct | 5 | 5 | AY.100 | 0.00023 |
S | 67 | A67V | gCt | gTt | 5 | 5 | AY.107 | 0.00233 |
S | 67 | A67V | gCt | gTt | 5 | 5 | AY.117 | 0.000423 |
S | 67 | A67S | Gct | Tct | 5 | 5 | AY.117 | 0.000423 |
S | 67 | A67del | GCT | --- | 5 | 5 | AY.33 | 0.000334 |
S | 67 | A67del | GCT | --- | 5 | 5 | AY.46 | 0.00052 |
S | 67 | A67S | Gct | Tct | 5 | 5 | AY.47 | 0.000156 |
S | 67 | A67P | Gct | Cct | 5 | 5 | AY.61 | 0.000524 |
S | 67 | A67V | gCt | gTt | 5 | 5 | AY.98.1 | 0.000242 |
S | 67 | A67A | gcT | gcC | 5 | 5 | B.1 | 0.000046 |
S | 67 | A67A | gcT | gcC | 3 | 5 | B.1.1 | 0.000054 |
S | 67 | A67A | gcT | gcA | 1 | 5 | B.1.1 | 0.000018 |
S | 67 | A67A | gcT | gcG | 1 | 5 | B.1.1 | 0.000018 |
S | 67 | A67S | Gct | Tct | 5 | 5 | B.1.1.174 | 0.016892 |
S | 67 | A67V | gCt | gTt | 5 | 5 | B.1.1.70 | 0.001705 |
S | 67 | A67S | Gct | Tct | 5 | 5 | B.1.177.86 | 0.000917 |
S | 67 | A67del1 | gCT | gT- | 5 | 5 | B.1.525 | 0.000566 |
S | 67 | A67V | gCt | gTt | 5 | 5 | B.1.575 | 0.001517 |
S | 67 | A67V | gCt | gTt | 5 | 5 | B.1.576 | 0.004533 |
S | 67 | A67S | Gct | Tct | 5 | 5 | B.1.621 | 0.000443 |
S | 67 | A67S | Gct | Tct | 5 | 5 | P.1.7 | 0.001596 |
S | 67 | A67S | Gct | Tct | 4 | 5 | P.2 | 0.000747 |
S | 67 | A67S | GcT | TcA | 1 | 5 | P.2 | 0.000187 |
S | 67 | A67V | gCt | gTt | 5 | 5 | P.6 | 0.015723 |
S | 67 | A67V | gCt | gTt | 5 | 5 | Q.8 | 0.000825 |
S | 67 | A67V | gCt | gTt | 5 | 5 | W.1 | 0.043478 |
S | 67 | A67del | GCT | --- | 4 | 4 | 0.222222 | |
S | 67 | A67del | GCT | --- | 4 | 4 | AY.119 | 0.000141 |
S | 67 | A67A | gcT | gcG | 2 | 4 | AY.119 | 0.000071 |
S | 67 | A67A | gcT | gcA | 1 | 4 | AY.119 | 0.000035 |
S | 67 | A67A | gcT | gcC | 1 | 4 | AY.119 | 0.000035 |
S | 67 | A67S | Gct | Tct | 4 | 4 | AY.120 | 0.000149 |
S | 67 | A67del | GCT | --- | 4 | 4 | AY.20 | 0.000155 |
S | 67 | A67V | gCt | gTt | 4 | 4 | AY.23 | 0.000279 |
S | 67 | A67S | Gct | Tct | 4 | 4 | AY.33 | 0.000267 |
S | 67 | A67del | GCT | --- | 4 | 4 | AY.39 | 0.000099 |
S | 67 | A67del1 | gcT | gc- | 3 | 4 | AY.4 | 0.000005 |
S | 67 | A67del1 | Gct | -ct | 1 | 4 | AY.4 | 0.000002 |
S | 67 | A67del2 | GCt | --t | 4 | 4 | AY.43 | 0.000018 |
S | 67 | A67del1 | gcT | gc- | 3 | 4 | AY.44 | 0.000018 |
S | 67 | A67del1 | GCT | -NN | 1 | 4 | AY.44 | 0.000006 |
S | 67 | A67V | gCt | gTt | 4 | 4 | AY.46.4 | 0.000658 |
S | 67 | A67del | GCT | --- | 4 | 4 | AY.61 | 0.000419 |
S | 67 | A67V | gCt | gTt | 4 | 4 | AY.71 | 0.0019 |
S | 67 | A67V | gCt | gTt | 4 | 4 | AY.75.1 | 0.000721 |
S | 67 | A67del | GCT | --- | 4 | 4 | AY.85 | 0.001709 |
S | 67 | A67del | GCT | --- | 4 | 4 | AY.9.2 | 0.000147 |
S | 67 | A67S | Gct | Tct | 4 | 4 | AY.98.1 | 0.000194 |
S | 67 | A67del | GCT | --- | 4 | 4 | AY.99.2 | 0.000369 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B | 0.000511 |
S | 67 | A67del1 | gcT | gc- | 4 | 4 | B.1.1 | 0.000073 |
S | 67 | A67S | Gct | Tct | 4 | 4 | B.1.1.163 | 0.030534 |
S | 67 | A67S | Gct | Tct | 4 | 4 | B.1.1.176 | 0.001757 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B.1.1.214 | 0.000222 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B.1.1.222 | 0.000816 |
S | 67 | A67S | Gct | Tct | 4 | 4 | B.1.1.294 | 0.005063 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B.1.1.512 | 0.114286 |
S | 67 | A67P | Gct | Cct | 4 | 4 | B.1.1.7 | 0.000004 |
S | 67 | A67del | GCT | --- | 4 | 4 | B.1.108 | 0.023256 |
S | 67 | A67T | Gct | Act | 4 | 4 | B.1.164 | 0.059701 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B.1.177.32 | 0.005398 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B.1.177.33 | 0.006579 |
S | 67 | A67S | Gct | Tct | 4 | 4 | B.1.177.48 | 0.0125 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B.1.177.56 | 0.00267 |
S | 67 | A67del | GCT | --- | 4 | 4 | B.1.221 | 0.000284 |
S | 67 | A67del1 | gCT | gT- | 4 | 4 | B.1.258.22 | 0.010667 |
S | 67 | A67S | Gct | Tct | 4 | 4 | B.1.311 | 0.001098 |
S | 67 | A67V | gCt | gTt | 4 | 4 | B.1.337 | 0.022346 |
S | 67 | A67del | GCT | --- | 4 | 4 | B.1.525 | 0.000453 |
S | 67 | A67S | Gct | Tct | 4 | 4 | B.1.566 | 0.076923 |
S | 67 | A67D | gCt | gAt | 4 | 4 | B.1.617.2 | 0.000015 |
S | 67 | A67V | gCt | gTt | 4 | 4 | D.2 | 0.0003 |
S | 67 | A67S | Gct | Tct | 4 | 4 | P.1.12 | 0.001936 |
S | 67 | A67S | Gct | Tct | 4 | 4 | P.1.14 | 0.000191 |
S | 67 | A67S | Gct | Tct | 4 | 4 | P.1.17 | 0.000647 |
S | 67 | A67V | gCt | gTt | 3 | 4 | P.2 | 0.00056 |
S | 67 | A67V | gCT | gTA | 1 | 4 | P.2 | 0.000187 |
S | 67 | A67V | gCt | gTt | 4 | 4 | Q.1 | 0.000505 |
S | 67 | A67A | gcT | gcC | 3 | 3 | 0.166667 | |
S | 67 | A67S | Gct | Tct | 2 | 3 | 0.111111 | |
S | 67 | A67S | GcT | TcC | 1 | 3 | 0.055556 | |
S | 67 | A67V | gCt | gTt | 3 | 3 | A.2.5.3 | 0.030928 |
S | 67 | A67V | gCt | gTt | 3 | 3 | A.23.1 | 0.002113 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.113 | 0.000427 |
S | 67 | A67P | Gct | Cct | 3 | 3 | AY.113 | 0.000427 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.116 | 0.00086 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.118 | 0.000188 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.118 | 0.000188 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.12 | 0.000948 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.121 | 0.000406 |
S | 67 | A67S | Gct | Tct | 3 | 3 | AY.14 | 0.000264 |
S | 67 | A67D | gCt | gAt | 3 | 3 | AY.3 | 0.00003 |
S | 67 | A67A | gcT | gcC | 1 | 3 | AY.3 | 0.00001 |
S | 67 | A67A | gcT | gcA | 1 | 3 | AY.3 | 0.00001 |
S | 67 | A67A | gcT | gcG | 1 | 3 | AY.3 | 0.00001 |
S | 67 | A67S | Gct | Tct | 2 | 3 | AY.30 | 0.000791 |
S | 67 | A67S | GcT | TcA | 1 | 3 | AY.30 | 0.000396 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.38 | 0.001498 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.39.1 | 0.000119 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.4.5 | 0.000322 |
S | 67 | A67S | Gct | Tct | 3 | 3 | AY.42 | 0.000121 |
S | 67 | A67T | Gct | Act | 3 | 3 | AY.43 | 0.000013 |
S | 67 | A67T | Gct | Act | 3 | 3 | AY.44 | 0.000018 |
S | 67 | A67S | Gct | Tct | 3 | 3 | AY.5.4 | 0.00083 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.58 | 0.002722 |
S | 67 | A67S | Gct | Tct | 3 | 3 | AY.61 | 0.000314 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.65 | 0.001599 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.74 | 0.000347 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.75.1 | 0.000541 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.9.1 | 0.000251 |
S | 67 | A67del | GCT | --- | 3 | 3 | AY.98.1 | 0.000145 |
S | 67 | A67V | gCt | gTt | 3 | 3 | AY.99 | 0.003148 |
S | 67 | A67D | gCt | gAt | 3 | 3 | B.1 | 0.000027 |
S | 67 | A67T | Gct | Act | 3 | 3 | B.1.1 | 0.000054 |
S | 67 | A67A | gcT | gcC | 3 | 3 | B.1.1.1 | 0.00098 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.1.186 | 0.010309 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.1.1.196 | 0.017143 |
S | 67 | A67V | gCt | gTt | 2 | 3 | B.1.1.28 | 0.000622 |
S | 67 | A67V | gCT | gTA | 1 | 3 | B.1.1.28 | 0.000311 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.1.284 | 0.000322 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.1.311 | 0.001074 |
S | 67 | A67A | gcT | gcG | 2 | 3 | B.1.1.33 | 0.000842 |
S | 67 | A67S | Gct | Tct | 1 | 3 | B.1.1.33 | 0.000421 |
S | 67 | A67A | gcT | gcC | 1 | 3 | B.1.1.33 | 0.000421 |
S | 67 | A67S | GcT | TcG | 1 | 3 | B.1.1.33 | 0.000421 |
S | 67 | A67L | GCt | CTt | 1 | 3 | B.1.1.33 | 0.000421 |
S | 67 | A67L | GCT | TTG | 1 | 3 | B.1.1.33 | 0.000421 |
S | 67 | A67S | GCt | AGt | 1 | 3 | B.1.1.33 | 0.000421 |
S | 67 | A67L | GCT | CTG | 1 | 3 | B.1.1.33 | 0.000421 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.1.37 | 0.000579 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.1.391 | 0.025641 |
S | 67 | A67A | gcT | gcC | 3 | 3 | B.1.1.519 | 0.000119 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.1.1.523 | 0.004687 |
S | 67 | A67T | Gct | Act | 3 | 3 | B.1.1.523 | 0.004687 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.160.22 | 0.02027 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.1.160.7 | 0.006237 |
S | 67 | A67A | gcT | gcC | 3 | 3 | B.1.177 | 0.00004 |
S | 67 | A67T | Gct | Act | 3 | 3 | B.1.177.7 | 0.000495 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.1.177.73 | 0.001699 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.177.79 | 0.007026 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.1.177.81 | 0.000568 |
S | 67 | A67del1 | gcT | gc- | 2 | 3 | B.1.2 | 0.000018 |
S | 67 | A67del1 | GCT | -NN | 1 | 3 | B.1.2 | 0.000009 |
S | 67 | A67T | Gct | Act | 3 | 3 | B.1.221 | 0.000213 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.1.240 | 0.000647 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.258.17 | 0.000312 |
S | 67 | A67A | gcT | gcA | 2 | 3 | B.1.351 | 0.000059 |
S | 67 | A67A | gcT | gcC | 1 | 3 | B.1.351 | 0.00003 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.448 | 0.007874 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.465 | 0.011407 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.468 | 0.017143 |
S | 67 | A67V | gCt | gTt | 3 | 3 | B.1.637 | 0.000219 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.1.637 | 0.000219 |
S | 67 | A67S | Gct | Tct | 3 | 3 | B.6 | 0.00273 |
S | 67 | A67T | Gct | Act | 3 | 3 | P.1 | 0.000047 |
S | 67 | A67P | Gct | Cct | 3 | 3 | P.1 | 0.000047 |
S | 67 | A67S | Gct | Tct | 3 | 3 | P.1.2 | 0.003468 |
S | 67 | A67P | Gct | Cct | 2 | 2 | 0.111111 | |
S | 67 | A67T | Gct | Act | 2 | 2 | 0.111111 | |
S | 67 | A67del1 | gcT | gc- | 1 | 2 | 0.055556 | |
S | 67 | A67del1 | GCT | KB- | 1 | 2 | 0.055556 | |
S | 67 | A67Y | GCt | TAt | 2 | 2 | All | 0 |
S | 67 | A67N | GCT | AAC | 1 | 2 | All | 0 |
S | 67 | A67N | GCt | AAt | 1 | 2 | All | 0 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.108 | 0.002205 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.111 | 0.000366 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.117 | 0.000169 |
S | 67 | A67D | gCt | gAt | 2 | 2 | AY.117 | 0.000169 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.118 | 0.000125 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.120 | 0.000074 |
S | 67 | A67A | gcT | gcC | 2 | 2 | AY.120 | 0.000074 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.120.2.1 | 0.000997 |
S | 67 | A67del2 | gCT | g-- | 2 | 2 | AY.25 | 0.000012 |
S | 67 | A67A | gcT | gcC | 2 | 2 | AY.25 | 0.000012 |
S | 67 | A67del1 | GcT | Nc- | 1 | 2 | AY.25 | 0.000006 |
S | 67 | A67del1 | gcT | gc- | 1 | 2 | AY.25 | 0.000006 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.27 | 0.000129 |
S | 67 | A67T | GcT | AcG | 1 | 2 | AY.3 | 0.00001 |
S | 67 | A67T | GcT | AcA | 1 | 2 | AY.3 | 0.00001 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.3.1 | 0.000171 |
S | 67 | A67G | gCT | gGA | 1 | 2 | AY.30 | 0.000396 |
S | 67 | A67G | gCt | gGt | 1 | 2 | AY.30 | 0.000396 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.34 | 0.000194 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.34 | 0.000194 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.34.1 | 0.00102 |
S | 67 | A67A | gcT | gcC | 2 | 2 | AY.39 | 0.000049 |
S | 67 | A67T | Gct | Act | 2 | 2 | AY.4 | 0.000003 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.4.5 | 0.000215 |
S | 67 | A67del1 | GCT | -YW | 1 | 2 | AY.43 | 0.000004 |
S | 67 | A67del1 | gcT | gc- | 1 | 2 | AY.43 | 0.000004 |
S | 67 | A67D | gCt | gAt | 2 | 2 | AY.44 | 0.000012 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.46.5 | 0.000397 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.46.6 | 0.000144 |
S | 67 | A67del1 | gcT | gc- | 1 | 2 | AY.5 | 0.000021 |
S | 67 | A67del1 | Gct | -ct | 1 | 2 | AY.5 | 0.000021 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.5.2 | 0.004926 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.5.3 | 0.000675 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.52 | 0.001629 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.54 | 0.000191 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.54 | 0.000191 |
S | 67 | A67T | Gct | Act | 2 | 2 | AY.59 | 0.001059 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.6 | 0.000082 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.67 | 0.000929 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.69 | 0.000373 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.7 | 0.000392 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.7.2 | 0.001119 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.7.2 | 0.001119 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.71 | 0.00095 |
S | 67 | A67D | gCt | gAt | 2 | 2 | AY.75 | 0.000112 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.75 | 0.000112 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.85 | 0.000854 |
S | 67 | A67del1 | gcT | gc- | 2 | 2 | AY.9 | 0.000135 |
S | 67 | A67V | gCt | gTt | 2 | 2 | AY.92 | 0.000575 |
S | 67 | A67del | GCT | --- | 2 | 2 | AY.94 | 0.000885 |
S | 67 | A67del1 | Gct | -ct | 1 | 2 | AY.96 | 0.002075 |
S | 67 | A67del1 | gcT | gc- | 1 | 2 | AY.96 | 0.002075 |
S | 67 | A67S | Gct | Tct | 2 | 2 | AY.98 | 0.000158 |
S | 67 | A67T | Gct | Act | 2 | 2 | B.1 | 0.000018 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.1.231 | 0.006192 |
S | 67 | A67A | gcT | gcC | 2 | 2 | B.1.1.306 | 0.000877 |
S | 67 | A67P | GcT | CcG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67V | gCT | gTG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67P | Gct | Cct | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67G | gCt | gGt | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67V | gCt | gTt | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67G | gCT | gGG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67T | GcT | AcG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67T | Gct | Act | 1 | 2 | B.1.1.33 | 0.000421 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.170 | 0.008621 |
S | 67 | A67T | Gct | Act | 2 | 2 | B.1.177 | 0.000026 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.177.12 | 0.000303 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.177.21 | 0.000153 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.177.57 | 0.000562 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.177.60 | 0.000437 |
S | 67 | A67del | GCT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
S | 67 | A67del | GCT | --- | 2 | 2 | B.1.179 | 0.007519 |
S | 67 | A67P | Gct | Cct | 2 | 2 | B.1.2 | 0.000018 |
S | 67 | A67G | gCt | gGt | 2 | 2 | B.1.2 | 0.000018 |
S | 67 | A67D | gCt | gAt | 2 | 2 | B.1.2 | 0.000018 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.221 | 0.000142 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.232 | 0.001075 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.240 | 0.000431 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.243 | 0.000139 |
S | 67 | A67del | GCT | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 67 | A67T | Gct | Act | 2 | 2 | B.1.258.17 | 0.000208 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.279 | 0.001027 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.311 | 0.000549 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.349 | 0.00143 |
S | 67 | A67del | GCT | --- | 2 | 2 | B.1.351 | 0.000059 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.351.2 | 0.000605 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.36 | 0.000292 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.369 | 0.00057 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.399 | 0.003868 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.426 | 0.002018 |
S | 67 | A67T | Gct | Act | 2 | 2 | B.1.429 | 0.000047 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.429 | 0.000047 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.497 | 0.00063 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.517 | 0.000854 |
S | 67 | A67F | GCt | TTt | 2 | 2 | B.1.525 | 0.000226 |
S | 67 | A67T | Gct | Act | 2 | 2 | B.1.526 | 0.000047 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.560 | 0.009259 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.567 | 0.006667 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.582 | 0.000981 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.595 | 0.000522 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.609 | 0.000959 |
S | 67 | A67T | Gct | Act | 2 | 2 | B.1.617.2 | 0.000008 |
S | 67 | A67A | gcT | gcC | 2 | 2 | B.1.617.2 | 0.000008 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.619 | 0.001742 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.621.1 | 0.001012 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.1.627 | 0.00404 |
S | 67 | A67V | gCt | gTt | 2 | 2 | B.1.630 | 0.010471 |
S | 67 | A67S | Gct | Tct | 2 | 2 | B.40 | 0.000729 |
S | 67 | A67V | gCt | gTt | 2 | 2 | C.1.2 | 0.008511 |
S | 67 | A67S | Gct | Tct | 2 | 2 | C.37 | 0.000232 |
S | 67 | A67S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
S | 67 | A67F | GCt | TTt | 2 | 2 | P.1 | 0.000032 |
S | 67 | A67L | GCT | TTA | 2 | 2 | P.1 | 0.000032 |
S | 67 | A67D | gCt | gAt | 2 | 2 | P.1 | 0.000032 |
S | 67 | A67del | GCT | --- | 2 | 2 | P.1.12 | 0.000968 |
S | 67 | A67S | Gct | Tct | 2 | 2 | P.1.13 | 0.001797 |
S | 67 | A67A | gcT | gcC | 2 | 2 | P.1.15 | 0.000465 |
S | 67 | A67S | Gct | Tct | 2 | 2 | P.1.17.1 | 0.00175 |
S | 67 | A67S | Gct | Tct | 2 | 2 | P.3 | 0.00319 |
S | 67 | A67V | gCt | gTt | 2 | 2 | P.3 | 0.00319 |
S | 67 | A67S | Gct | Tct | 2 | 2 | Q.1 | 0.000253 |
S | 67 | A67S | Gct | Tct | 2 | 2 | Q.7 | 0.002222 |
S | 67 | A67del | GCT | --- | 2 | 2 | R.1 | 0.00018 |
S | 67 | A67V | gCt | gTt | 1 | 1 | A | 0.000387 |
S | 67 | A67S | Gct | Tct | 1 | 1 | A | 0.000387 |
S | 67 | A67D | gCt | gAt | 1 | 1 | A.2.5 | 0.000499 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AA.2 | 0.007692 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AK.1 | 0.012658 |
S | 67 | A67R | GCT | AGG | 1 | 1 | All | 0 |
S | 67 | A67W | GCT | TGG | 1 | 1 | All | 0 |
S | 67 | A67K | GCT | AAA | 1 | 1 | All | 0 |
S | 67 | A67C | GCt | TGt | 1 | 1 | All | 0 |
S | 67 | A67M | GCT | ATG | 1 | 1 | All | 0 |
S | 67 | A67H | GCt | CAt | 1 | 1 | All | 0 |
S | 67 | A67X | GCT | TGA | 1 | 1 | All | 0 |
S | 67 | A67E | gCT | gAG | 1 | 1 | All | 0 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AM.4 | 0.003571 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AT.1 | 0.005128 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AU.1 | 0.001266 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.10 | 0.00053 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.100 | 0.000046 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.102 | 0.000027 |
S | 67 | A67G | gCt | gGt | 1 | 1 | AY.102 | 0.000027 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.102 | 0.000027 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.102 | 0.000027 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.103 | 0.000006 |
S | 67 | A67del2 | GCt | --t | 1 | 1 | AY.103 | 0.000006 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.104 | 0.001984 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.105 | 0.000643 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.106 | 0.000335 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.107 | 0.000466 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.11 | 0.001339 |
S | 67 | A67P | GcT | CcG | 1 | 1 | AY.110 | 0.000113 |
S | 67 | A67A | gcT | gcG | 1 | 1 | AY.110 | 0.000113 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.114 | 0.000231 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.119 | 0.000035 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.120 | 0.000037 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.120 | 0.000037 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.121 | 0.000135 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.13 | 0.000161 |
S | 67 | A67del1 | GcT | -cN | 1 | 1 | AY.14 | 0.000088 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.19 | 0.00114 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.21 | 0.001898 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.23 | 0.00007 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.24 | 0.000431 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.25 | 0.000006 |
S | 67 | A67del2 | gCT | g-- | 1 | 1 | AY.26 | 0.000028 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.27 | 0.000065 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.29 | 0.000016 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
S | 67 | A67P | Gct | Cct | 1 | 1 | AY.3.1 | 0.000085 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.3.1 | 0.000085 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.3.1 | 0.000085 |
S | 67 | A67X | GCT | TGA | 1 | 1 | AY.30 | 0.000396 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.30 | 0.000396 |
S | 67 | A67A | gcT | gcA | 1 | 1 | AY.30 | 0.000396 |
S | 67 | A67C | GCt | TGt | 1 | 1 | AY.30 | 0.000396 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.34 | 0.000097 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.36 | 0.000148 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.36 | 0.000148 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.37 | 0.000316 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.39 | 0.000025 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.39.2 | 0.001541 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.39.2 | 0.001541 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.39.2 | 0.001541 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.39.2 | 0.001541 |
S | 67 | A67Y | GCt | TAt | 1 | 1 | AY.39.2 | 0.001541 |
S | 67 | A67G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
S | 67 | A67del2 | GCt | --t | 1 | 1 | AY.4 | 0.000002 |
S | 67 | A67P | Gct | Cct | 1 | 1 | AY.4 | 0.000002 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.4.1 | 0.000737 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.4.2 | 0.000022 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.4.4 | 0.000409 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.40 | 0.000964 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.42 | 0.00004 |
S | 67 | A67N | GCT | AAC | 1 | 1 | AY.43 | 0.000004 |
S | 67 | A67del2 | GCt | --t | 1 | 1 | AY.44 | 0.000006 |
S | 67 | A67E | gCT | gAG | 1 | 1 | AY.44 | 0.000006 |
S | 67 | A67P | Gct | Cct | 1 | 1 | AY.44 | 0.000006 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.46 | 0.000104 |
S | 67 | A67del1 | GCT | -NN | 1 | 1 | AY.46 | 0.000104 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.46.2 | 0.000635 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.46.2 | 0.000635 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.46.5 | 0.000198 |
S | 67 | A67P | Gct | Cct | 1 | 1 | AY.46.6 | 0.000072 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.47 | 0.000031 |
S | 67 | A67P | Gct | Cct | 1 | 1 | AY.47 | 0.000031 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.48 | 0.000465 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.49 | 0.003195 |
S | 67 | A67A | gcT | gcG | 1 | 1 | AY.5 | 0.000021 |
S | 67 | A67G | gCt | gGt | 1 | 1 | AY.5 | 0.000021 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.5.4 | 0.000277 |
S | 67 | A67del1 | gCt | g-t | 1 | 1 | AY.50 | 0.000799 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.51 | 0.000909 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.54 | 0.000095 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.55 | 0.000917 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.56 | 0.001605 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.57 | 0.000656 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.58 | 0.000907 |
S | 67 | A67H | GCt | CAt | 1 | 1 | AY.59 | 0.00053 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.59 | 0.00053 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
S | 67 | A67P | Gct | Cct | 1 | 1 | AY.59 | 0.00053 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.6 | 0.000041 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.6 | 0.000041 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.60 | 0.000938 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.64 | 0.000595 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.64 | 0.000595 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.66 | 0.00107 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 67 | A67del1 | GCt | -At | 1 | 1 | AY.67 | 0.000464 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.70 | 0.000209 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.71 | 0.000475 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.71 | 0.000475 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.72 | 0.001361 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.73 | 0.000665 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.74 | 0.000116 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.75 | 0.000056 |
S | 67 | A67del2 | gCT | g-- | 1 | 1 | AY.75 | 0.000056 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.76 | 0.004831 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.78 | 0.001541 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.79 | 0.001211 |
S | 67 | A67M | GCT | ATG | 1 | 1 | AY.79 | 0.001211 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.8 | 0.000606 |
S | 67 | A67D | gCt | gAt | 1 | 1 | AY.8 | 0.000606 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.82 | 0.001357 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.84 | 0.000437 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.85 | 0.000427 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.85 | 0.000427 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.86 | 0.00083 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.9 | 0.000068 |
S | 67 | A67A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
S | 67 | A67G | gCt | gGt | 1 | 1 | AY.9.2 | 0.000037 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.91 | 0.00073 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.92 | 0.000287 |
S | 67 | A67del1 | GCT | -NN | 1 | 1 | AY.92 | 0.000287 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.93 | 0.000273 |
S | 67 | A67V | gCt | gTt | 1 | 1 | AY.94 | 0.000443 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | AY.94 | 0.000443 |
S | 67 | A67S | Gct | Tct | 1 | 1 | AY.94 | 0.000443 |
S | 67 | A67T | Gct | Act | 1 | 1 | AY.98.1 | 0.000048 |
S | 67 | A67del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 67 | A67del | GCT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B | 0.000128 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B | 0.000128 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B.1.1 | 0.000018 |
S | 67 | A67del2 | GCt | --t | 1 | 1 | B.1.1 | 0.000018 |
S | 67 | A67D | gCt | gAt | 1 | 1 | B.1.1 | 0.000018 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.118 | 0.010204 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.148 | 0.008772 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.157 | 0.000913 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.161 | 0.003534 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.163 | 0.007634 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.207 | 0.001182 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.1.220 | 0.001859 |
S | 67 | A67P | Gct | Cct | 1 | 1 | B.1.1.222 | 0.000204 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.228 | 0.003049 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.1.262 | 0.015152 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.263 | 0.001558 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.277 | 0.000759 |
S | 67 | A67A | gcT | gcA | 1 | 1 | B.1.1.279 | 0.001121 |
S | 67 | A67F | GCt | TTt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 67 | A67A | gcT | gcA | 1 | 1 | B.1.1.28 | 0.000311 |
S | 67 | A67L | GCT | TTA | 1 | 1 | B.1.1.28 | 0.000311 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | B.1.1.284 | 0.000107 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.291 | 0.000742 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.294 | 0.001266 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.297 | 0.002237 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.3 | 0.008696 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.305 | 0.003861 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.1.306 | 0.000438 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 67 | A67R | GCT | AGG | 1 | 1 | B.1.1.33 | 0.000421 |
S | 67 | A67F | GCt | TTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.347 | 0.018182 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.359 | 0.027778 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.369 | 0.000446 |
S | 67 | A67A | gcT | gcC | 1 | 1 | B.1.1.37 | 0.000193 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.376 | 0.005952 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.377 | 0.001381 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.385 | 0.004464 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.389 | 0.006061 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.404 | 0.015873 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.420 | 0.001006 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.424 | 0.045455 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.432 | 0.001266 |
S | 67 | A67A | gcT | gcA | 1 | 1 | B.1.1.434 | 0.000349 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.1.434 | 0.000349 |
S | 67 | A67D | gCt | gAt | 1 | 1 | B.1.1.464 | 0.001473 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.518 | 0.006329 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.523 | 0.001563 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.528 | 0.004808 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.528 | 0.004808 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.1.54 | 0.003021 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.1.63 | 0.000386 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
S | 67 | A67W | GCT | TGG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 67 | A67del2 | GCT | A-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.110.3 | 0.000718 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.111 | 0.001175 |
S | 67 | A67A | gcT | gcC | 1 | 1 | B.1.126 | 0.001276 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.131 | 0.008772 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.139 | 0.000733 |
S | 67 | A67A | gcT | gcC | 1 | 1 | B.1.160 | 0.000031 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.160.26 | 0.002421 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.160.32 | 0.004292 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.177.11 | 0.001698 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.177.23 | 0.003236 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.177.43 | 0.001477 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.177.56 | 0.000668 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
S | 67 | A67D | gCt | gAt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.177.77 | 0.000726 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.77 | 0.000726 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.195 | 0.005025 |
S | 67 | A67P | Gct | Cct | 1 | 1 | B.1.210 | 0.002132 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.212 | 0.016667 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.214 | 0.003663 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.214.2 | 0.0006 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.221 | 0.000071 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.234 | 0.000132 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.239 | 0.001221 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.241 | 0.000812 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.247 | 0.014925 |
S | 67 | A67D | gCt | gAt | 1 | 1 | B.1.258.16 | 0.001637 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.258.24 | 0.010753 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.276 | 0.016949 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.279 | 0.000514 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.298 | 0.002114 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.305 | 0.002151 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.308 | 0.034483 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.311 | 0.000275 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.320 | 0.001245 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.321 | 0.034483 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.325 | 0.006897 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B.1.351 | 0.00003 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.351.5 | 0.0006 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.351.5 | 0.0006 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.356 | 0.001727 |
S | 67 | A67A | gcT | gcC | 1 | 1 | B.1.356 | 0.001727 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.36.1 | 0.00114 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.36.19 | 0.009259 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.36.29 | 0.000517 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.36.31 | 0.001751 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.36.35 | 0.002604 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.36.36 | 0.000602 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.36.38 | 0.001642 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.362 | 0.001541 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.369 | 0.000285 |
S | 67 | A67A | gcT | gcC | 1 | 1 | B.1.375 | 0.00082 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.375 | 0.00082 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.391 | 0.001127 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.396 | 0.000706 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.400 | 0.000429 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.409 | 0.000781 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.409 | 0.000781 |
S | 67 | A67A | gcT | gcG | 1 | 1 | B.1.424 | 0.008065 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.426 | 0.001009 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 67 | A67D | gCt | gAt | 1 | 1 | B.1.427 | 0.00005 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.428 | 0.00102 |
S | 67 | A67N | GCt | AAt | 1 | 1 | B.1.429 | 0.000024 |
S | 67 | A67A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
S | 67 | A67P | Gct | Cct | 1 | 1 | B.1.438 | 0.006536 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.459 | 0.004082 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.469 | 0.00361 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.470 | 0.001404 |
S | 67 | A67D | gCt | gAt | 1 | 1 | B.1.497 | 0.000315 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.499 | 0.00105 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B.1.521 | 0.004975 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B.1.525 | 0.000113 |
S | 67 | A67D | gCt | gAt | 1 | 1 | B.1.525 | 0.000113 |
S | 67 | A67K | GCT | AAA | 1 | 1 | B.1.525 | 0.000113 |
S | 67 | A67del1 | Gct | -ct | 1 | 1 | B.1.526 | 0.000024 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.541 | 0.004425 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.543 | 0.01 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.564.1 | 0.001577 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.565 | 0.00081 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.575.1 | 0.002439 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.575.2 | 0.004808 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.595 | 0.000261 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.598 | 0.016949 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.609 | 0.000479 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.1.617.1 | 0.000129 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 67 | A67F | GCt | TTt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 67 | A67P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
S | 67 | A67Y | GCt | TAt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.617.3 | 0.002985 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.618 | 0.004032 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.619.1 | 0.000641 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
S | 67 | A67G | gCt | gGt | 1 | 1 | B.1.637 | 0.000073 |
S | 67 | A67del1 | gcT | gc- | 1 | 1 | B.1.637 | 0.000073 |
S | 67 | A67del | GCT | --- | 1 | 1 | B.1.637 | 0.000073 |
S | 67 | A67S | Gct | Tct | 1 | 1 | B.1.9.5 | 0.005682 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.1.93 | 0.000934 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.3 | 0.000831 |
S | 67 | A67T | Gct | Act | 1 | 1 | B.6 | 0.00091 |
S | 67 | A67V | gCt | gTt | 1 | 1 | B.61 | 0.005747 |
S | 67 | A67V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
S | 67 | A67S | Gct | Tct | 1 | 1 | C.31 | 0.017857 |
S | 67 | A67del | GCT | --- | 1 | 1 | C.35 | 0.000774 |
S | 67 | A67V | gCt | gTt | 1 | 1 | C.35 | 0.000774 |
S | 67 | A67V | gCt | gTt | 1 | 1 | C.36 | 0.000911 |
S | 67 | A67A | gcT | gcC | 1 | 1 | C.36.3 | 0.000567 |
S | 67 | A67del | GCT | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 67 | A67D | gCt | gAt | 1 | 1 | C.37 | 0.000116 |
S | 67 | A67A | gcT | gcC | 1 | 1 | N.5 | 0.001767 |
S | 67 | A67G | gCt | gGt | 1 | 1 | P.1 | 0.000016 |
S | 67 | A67del | GCT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 67 | A67del | GCT | --- | 1 | 1 | P.1.10.1 | 0.00813 |
S | 67 | A67V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
S | 67 | A67T | Gct | Act | 1 | 1 | P.1.14 | 0.000048 |
S | 67 | A67V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
S | 67 | A67V | gCt | gTt | 1 | 1 | P.1.15 | 0.000232 |
S | 67 | A67S | Gct | Tct | 1 | 1 | P.1.16 | 0.000374 |
S | 67 | A67V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
S | 67 | A67V | gCt | gTt | 1 | 1 | P.1.17.1 | 0.000875 |
S | 67 | A67A | gcT | gcA | 1 | 1 | P.2 | 0.000187 |
S | 67 | A67L | GCT | TTA | 1 | 1 | P.2 | 0.000187 |
S | 67 | A67F | GCt | TTt | 1 | 1 | P.2 | 0.000187 |
S | 67 | A67del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
S | 67 | A67V | gCt | gTt | 1 | 1 | Q.4 | 0.000455 |
S | 67 | A67A | gcT | gcC | 1 | 1 | Q.8 | 0.000165 |
S | 67 | A67S | Gct | Tct | 1 | 1 | R.1 | 0.00009 |
S | 67 | A67del | GCT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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