CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 67

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	67	A67V		nonsyn	gCt	gTt	19793	19783	0.999495	21761-21763
S	67	A67V		nonsyn	gCT	gTA	19793	6	0.000303137	21761-21763
S	67	A67V		nonsyn	gCT	gTC	19793	2	0.000101046	21761-21763
S	67	A67V		nonsyn	gCT	gTG	19793	2	0.000101046	21761-21763
S	67	A67S		nonsyn	Gct	Tct	5358	5349	0.99832	21761-21763
S	67	A67S		nonsyn	GcT	TcA	5358	5	0.000933184	21761-21763
S	67	A67S		nonsyn	GCt	AGt	5358	2	0.000373274	21761-21763
S	67	A67S		nonsyn	GcT	TcC	5358	1	0.000186637	21761-21763
S	67	A67S		nonsyn	GcT	TcG	5358	1	0.000186637	21761-21763
S	67	A67A		syn	gcT	gcC	1420	1369	0.964085	21761-21763
S	67	A67A		syn	gcT	gcA	1420	39	0.0274648	21761-21763
S	67	A67A		syn	gcT	gcG	1420	12	0.0084507	21761-21763
S	67	A67del		del	GCT	---	1313	1313	1	21761-21763
S	67	A67D		nonsyn	gCt	gAt	280	280	1	21761-21763
S	67	A67del1		del	gcT	gc-	187	157	0.839572	21761-21763
S	67	A67del1		del	gCT	gT-	187	15	0.0802139	21761-21763
S	67	A67del1		del	GCT	-NN	187	4	0.0213904	21761-21763
S	67	A67del1		del	Gct	-ct	187	4	0.0213904	21761-21763
S	67	A67del1		del	GCT	-YW	187	2	0.0106952	21761-21763
S	67	A67del1		del	gCt	g-t	187	1	0.00534759	21761-21763
S	67	A67del1		del	GCt	-At	187	1	0.00534759	21761-21763
S	67	A67del1		del	GCT	KB-	187	1	0.00534759	21761-21763
S	67	A67del1		del	GcT	Nc-	187	1	0.00534759	21761-21763
S	67	A67del1		del	GcT	-cN	187	1	0.00534759	21761-21763
S	67	A67T		nonsyn	Gct	Act	139	136	0.978417	21761-21763
S	67	A67T		nonsyn	GcT	AcG	139	2	0.0143885	21761-21763
S	67	A67T		nonsyn	GcT	AcA	139	1	0.00719424	21761-21763
S	67	A67G		nonsyn	gCt	gGt	33	30	0.909091	21761-21763
S	67	A67G		nonsyn	gCT	gGG	33	2	0.0606061	21761-21763
S	67	A67G		nonsyn	gCT	gGA	33	1	0.030303	21761-21763
S	67	A67P		nonsyn	Gct	Cct	32	30	0.9375	21761-21763
S	67	A67P		nonsyn	GcT	CcG	32	2	0.0625	21761-21763
S	67	A67del2		del	GCt	--t	13	8	0.615385	21761-21763
S	67	A67del2		del	gCT	g--	13	4	0.307692	21761-21763
S	67	A67del2		del	GCT	A--	13	1	0.0769231	21761-21763
S	67	A67F		nonsyn	GCt	TTt	8	8	1	21761-21763
S	67	A67L		nonsyn	GCT	TTA	7	4	0.571429	21761-21763
S	67	A67L		nonsyn	GCt	CTt	7	1	0.142857	21761-21763
S	67	A67L		nonsyn	GCT	TTG	7	1	0.142857	21761-21763
S	67	A67L		nonsyn	GCT	CTG	7	1	0.142857	21761-21763
S	67	A67Y		nonsyn	GCt	TAt	2	2	1	21761-21763
S	67	A67N		nonsyn	GCt	AAt	2	1	0.5	21761-21763
S	67	A67N		nonsyn	GCT	AAC	2	1	0.5	21761-21763
S	67	A67K		nonsyn	GCT	AAA	1	1	1	21761-21763
S	67	A67X		nonsyn	GCT	TGA	1	1	1	21761-21763
S	67	A67C		nonsyn	GCt	TGt	1	1	1	21761-21763
S	67	A67M		nonsyn	GCT	ATG	1	1	1	21761-21763
S	67	A67E		nonsyn	gCT	gAG	1	1	1	21761-21763
S	67	A67H		nonsyn	GCt	CAt	1	1	1	21761-21763
S	67	A67R		nonsyn	GCT	AGG	1	1	1	21761-21763
S	67	A67W		nonsyn	GCT	TGG	1	1	1	21761-21763

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	67	A67V	gCt	gTt	19783	19793	All	0.003784
S	67	A67V	gCT	gTA	6	19793	All	0.000001
S	67	A67V	gCT	gTG	2	19793	All	0
S	67	A67V	gCT	gTC	2	19793	All	0
S	67	A67V	gCt	gTt	8543	8545	B.1.525	0.966731
S	67	A67V	gCT	gTG	1	8545	B.1.525	0.000113
S	67	A67V	gCT	gTC	1	8545	B.1.525	0.000113
S	67	A67S	Gct	Tct	5349	5358	All	0.001023
S	67	A67S	GcT	TcA	5	5358	All	0.000001
S	67	A67S	GCt	AGt	2	5358	All	0
S	67	A67S	GcT	TcC	1	5358	All	0
S	67	A67S	GcT	TcG	1	5358	All	0
S	67	A67V	gCt	gTt	2211	2212	B.1.1.7	0.001979
S	67	A67V	gCT	gTA	1	2212	B.1.1.7	0.000001
S	67	A67V	gCt	gTt	1953	1953	AY.6	0.080324
S	67	A67S	Gct	Tct	1878	1878	AY.43	0.00832
S	67	A67V	gCt	gTt	1601	1601	AY.9.2	0.058804
S	67	A67A	gcT	gcC	1369	1420	All	0.000262
S	67	A67A	gcT	gcA	39	1420	All	0.000007
S	67	A67A	gcT	gcG	12	1420	All	0.000002
S	67	A67V	gCt	gTt	1321	1322	AY.4	0.002056
S	67	A67V	gCT	gTC	1	1322	AY.4	0.000002
S	67	A67del	GCT	---	1313	1313	All	0.000251
S	67	A67S	Gct	Tct	1053	1053	B.1.1.7	0.000943
S	67	A67A	gcT	gcC	1039	1051	B.1.1.7	0.00093
S	67	A67A	gcT	gcA	12	1051	B.1.1.7	0.000011
S	67	A67S	Gct	Tct	591	591	AY.4	0.00092
S	67	A67V	gCt	gTt	470	470	B.1.351.3	0.411919
S	67	A67V	gCt	gTt	350	350	B.1.617.2	0.001318
S	67	A67V	gCt	gTt	340	340	B.1.258.22	0.906667
S	67	A67V	gCt	gTt	338	338	AY.26	0.009569
S	67	A67del	GCT	---	282	282	C.37	0.03273
S	67	A67D	gCt	gAt	280	280	All	0.000054
S	67	A67S	Gct	Tct	236	236	B.1.617.2	0.000889
S	67	A67D	gCt	gAt	211	211	B.1.1.7	0.000189
S	67	A67del1	gcT	gc-	157	187	All	0.00003
S	67	A67del1	gCT	gT-	15	187	All	0.000003
S	67	A67del1	GCT	-NN	4	187	All	0.000001
S	67	A67del1	Gct	-ct	4	187	All	0.000001
S	67	A67del1	GCT	-YW	2	187	All	0
S	67	A67del1	GCT	KB-	1	187	All	0
S	67	A67del1	GcT	Nc-	1	187	All	0
S	67	A67del1	GCt	-At	1	187	All	0
S	67	A67del1	GcT	-cN	1	187	All	0
S	67	A67del1	gCt	g-t	1	187	All	0
S	67	A67V	gCt	gTt	171	171	B.1.177	0.002252
S	67	A67del	GCT	---	167	167	B.1.626	0.954286
S	67	A67A	gcT	gcC	152	154	AY.4	0.000237
S	67	A67A	gcT	gcA	2	154	AY.4	0.000003
S	67	A67V	gCt	gTt	154	154	AY.44	0.000937
S	67	A67V	gCt	gTt	141	141	B.1.2	0.001242
S	67	A67T	Gct	Act	136	139	All	0.000026
S	67	A67T	GcT	AcG	2	139	All	0
S	67	A67T	GcT	AcA	1	139	All	0
S	67	A67del1	gcT	gc-	123	127	B.1.1.7	0.00011
S	67	A67del1	gCT	gT-	4	127	B.1.1.7	0.000004
S	67	A67S	Gct	Tct	124	126	P.1	0.001953
S	67	A67S	GcT	TcA	2	126	P.1	0.000032
S	67	A67V	gCt	gTt	123	123	AY.103	0.000764
S	67	A67S	Gct	Tct	123	123	B.1.541	0.544248
S	67	A67V	gCt	gTt	107	107	AY.25	0.000644
S	67	A67V	gCt	gTt	104	104	B.1	0.000953
S	67	A67del	GCT	---	101	101	AY.43	0.000447
S	67	A67V	gCt	gTt	98	98	AY.43	0.000434
S	67	A67del	GCT	---	98	98	B.1.1.7	0.000088
S	67	A67V	gCt	gTt	84	84	AY.36	0.01245
S	67	A67del	GCT	---	80	80	B.1.617.2	0.000301
S	67	A67S	Gct	Tct	74	74	B.1.1.50	0.050238
S	67	A67V	gCt	gTt	72	72	B.1.427	0.003636
S	67	A67S	Gct	Tct	71	71	B.1.177.7	0.011705
S	67	A67S	Gct	Tct	69	69	AY.25	0.000415
S	67	A67S	Gct	Tct	68	68	AY.103	0.000422
S	67	A67V	gCt	gTt	64	64	B.1.1	0.001161
S	67	A67del	GCT	---	61	61	AY.4	0.000095
S	67	A67V	gCt	gTt	60	60	Q.2	0.03681
S	67	A67S	Gct	Tct	58	58	B.1.177	0.000764
S	67	A67V	gCt	gTt	57	57	B.1.351	0.001694
S	67	A67A	gcT	gcC	53	55	AY.44	0.000323
S	67	A67A	gcT	gcA	2	55	AY.44	0.000012
S	67	A67V	gCt	gTt	54	54	B.1.1.519	0.002144
S	67	A67V	gCt	gTt	53	53	AY.3	0.000527
S	67	A67V	gCt	gTt	52	52	AY.109	0.038462
S	67	A67S	Gct	Tct	49	49	B.1.1	0.000889
S	67	A67V	gCt	gTt	47	47	AY.14	0.004137
S	67	A67S	Gct	Tct	47	47	AY.9.2	0.001726
S	67	A67del	GCT	---	46	46	AY.44	0.00028
S	67	A67S	Gct	Tct	41	41	AY.113	0.005838
S	67	A67del	GCT	---	41	41	AY.25	0.000247
S	67	A67S	Gct	Tct	40	41	B.1.2	0.000352
S	67	A67S	GCt	AGt	1	41	B.1.2	0.000009
S	67	A67V	gCt	gTt	36	36	AY.4.2	0.000781
S	67	A67S	Gct	Tct	36	36	AY.9.1	0.003014
S	67	A67V	gCt	gTt	35	35	B.1.429	0.000824
S	67	A67del	GCT	---	34	34	AY.9	0.002298
S	67	A67G	gCt	gGt	30	33	All	0.000006
S	67	A67G	gCT	gGG	2	33	All	0
S	67	A67G	gCT	gGA	1	33	All	0
S	67	A67V	gCt	gTt	33	33	B.1.526	0.000776
S	67	A67P	Gct	Cct	30	32	All	0.000006
S	67	A67P	GcT	CcG	2	32	All	0
S	67	A67S	Gct	Tct	31	31	B.1	0.000284
S	67	A67S	Gct	Tct	30	30	B.1.1.214	0.001664
S	67	A67S	Gct	Tct	29	29	AY.102	0.000769
S	67	A67S	Gct	Tct	29	29	B.1.596	0.002527
S	67	A67A	gcT	gcC	27	27	B.1.258	0.001797
S	67	A67V	gCt	gTt	27	27	B.1.438.1	0.002896
S	67	A67V	gCt	gTt	26	26	AY.102	0.000689
S	67	A67V	gCt	gTt	26	26	AY.27	0.001683
S	67	A67S	Gct	Tct	26	26	AY.5	0.000537
S	67	A67S	Gct	Tct	25	25	AY.26	0.000708
S	67	A67V	gCt	gTt	25	25	AY.75	0.001401
S	67	A67V	gCt	gTt	25	25	B.1.177.53	0.059809
S	67	A67V	gCt	gTt	25	25	B.1.596	0.002178
S	67	A67V	gCt	gTt	23	23	B.1.1.368	0.070988
S	67	A67V	gCt	gTt	23	23	B.1.160	0.000717
S	67	A67V	gCt	gTt	22	22	AY.119	0.000777
S	67	A67S	Gct	Tct	22	22	B.1.1.277	0.016692
S	67	A67S	Gct	Tct	21	21	AY.20	0.000816
S	67	A67S	Gct	Tct	21	21	AY.3.1	0.00179
S	67	A67T	Gct	Act	21	21	B.1.2	0.000185
S	67	A67V	gCt	gTt	18	21	P.1	0.000284
S	67	A67V	gCT	gTA	3	21	P.1	0.000047
S	67	A67S	Gct	Tct	20	20	AY.3	0.000199
S	67	A67V	gCt	gTt	20	20	AY.5	0.000413
S	67	A67del	GCT	---	19	19	AY.103	0.000118
S	67	A67S	Gct	Tct	19	19	AY.119	0.000671
S	67	A67V	gCt	gTt	19	19	AY.20	0.000738
S	67	A67del	GCT	---	19	19	AY.3	0.000189
S	67	A67V	gCt	gTt	19	19	AY.47	0.000591
S	67	A67S	Gct	Tct	19	19	B.1.427	0.000959
S	67	A67S	Gct	Tct	19	19	P.1.10	0.00512
S	67	A67T	Gct	Act	18	18	B.1.1.7	0.000016
S	67	A67V	gCt	gTt	18	18	C.37	0.002089
S	67	A67del	GCT	---	17	17	AY.102	0.000451
S	67	A67V	gCt	gTt	17	17	AY.39	0.00042
S	67	A67S	Gct	Tct	17	17	AY.46.4	0.002797
S	67	A67V	gCt	gTt	17	17	B.1.351.2	0.005144
S	67	A67T	Gct	Act	16	16	AY.33	0.001068
S	67	A67V	gCt	gTt	16	16	AY.53	0.0046
S	67	A67V	gCt	gTt	16	16	B.1.243	0.001113
S	67	A67S	Gct	Tct	16	16	B.1.258.17	0.001664
S	67	A67S	Gct	Tct	16	16	B.1.351	0.000476
S	67	A67V	gCt	gTt	16	16	R.1	0.00144
S	67	A67T	Gct	Act	15	15	B.1.1.519	0.000596
S	67	A67S	Gct	Tct	14	14	AY.39	0.000346
S	67	A67del	GCT	---	14	14	B.1.1	0.000254
S	67	A67G	gCt	gGt	13	14	B.1.1.7	0.000012
S	67	A67G	gCT	gGG	1	14	B.1.1.7	0.000001
S	67	A67del	GCT	---	14	14	B.1.177	0.000184
S	67	A67del2	GCt	--t	8	13	All	0.000002
S	67	A67del2	gCT	g--	4	13	All	0.000001
S	67	A67del2	GCT	A--	1	13	All	0
S	67	A67V	gCt	gTt	13	13	AY.46	0.001353
S	67	A67V	gCt	gTt	13	13	B.1.258	0.000865
S	67	A67V	gCt	gTt	13	13	B.1.621	0.001151
S	67	A67A	gcT	gcC	12	12	AY.118	0.000752
S	67	A67V	gCt	gTt	12	12	AY.3.1	0.001023
S	67	A67V	gCt	gTt	12	12	AY.45	0.00146
S	67	A67V	gCt	gTt	11	11	AY.100	0.000506
S	67	A67A	gcT	gcC	9	11	AY.103	0.000056
S	67	A67A	gcT	gcA	2	11	AY.103	0.000012
S	67	A67V	gCt	gTt	11	11	AY.29	0.000174
S	67	A67S	Gct	Tct	11	11	AY.29	0.000174
S	67	A67del	GCT	---	11	11	AY.34.1	0.005609
S	67	A67S	Gct	Tct	11	11	AY.44	0.000067
S	67	A67S	Gct	Tct	11	11	AY.46	0.001145
S	67	A67del	GCT	---	11	11	AY.5	0.000227
S	67	A67V	gCt	gTt	11	11	AY.61	0.001153
S	67	A67V	gCt	gTt	11	11	AY.62	0.004793
S	67	A67V	gCt	gTt	11	11	AY.98	0.000869
S	67	A67S	Gct	Tct	11	11	B.1.1.186	0.037801
S	67	A67V	gCt	gTt	11	11	B.1.234	0.001451
S	67	A67S	Gct	Tct	11	11	P.1.15	0.002556
S	67	A67V	gCt	gTt	10	10	AY.120	0.000372
S	67	A67del	GCT	---	10	10	AY.26	0.000283
S	67	A67V	gCt	gTt	10	10	AY.30	0.003957
S	67	A67V	gCt	gTt	10	10	AY.42	0.000402
S	67	A67del	GCT	---	10	10	AY.45	0.001217
S	67	A67S	Gct	Tct	10	10	AY.9	0.000676
S	67	A67S	Gct	Tct	10	10	B.1.1.25	0.005685
S	67	A67V	gCt	gTt	10	10	B.1.551	0.012903
S	67	A67V	gCt	gTt	9	9	AY.113	0.001282
S	67	A67S	Gct	Tct	9	9	AY.4.2	0.000195
S	67	A67del	GCT	---	9	9	AY.4.5	0.000967
S	67	A67del	GCT	---	9	9	B.1	0.000082
S	67	A67V	gCt	gTt	9	9	B.1.1.318	0.002716
S	67	A67S	Gct	Tct	9	9	B.1.1.519	0.000357
S	67	A67V	gCt	gTt	9	9	B.1.177.81	0.001704
S	67	A67S	Gct	Tct	9	9	B.1.258	0.000599
S	67	A67del	GCT	---	9	9	B.1.429	0.000212
S	67	A67F	GCt	TTt	8	8	All	0.000002
S	67	A67D	gCt	gAt	8	8	AY.103	0.00005
S	67	A67V	gCt	gTt	8	8	AY.35	0.001864
S	67	A67del	GCT	---	8	8	AY.47	0.000249
S	67	A67S	Gct	Tct	8	8	AY.6	0.000329
S	67	A67V	gCt	gTt	8	8	AY.9	0.000541
S	67	A67del	GCT	---	8	8	AY.98	0.000632
S	67	A67V	gCt	gTt	8	8	B.1.177.4	0.001688
S	67	A67del	GCT	---	8	8	B.1.177.86	0.001468
S	67	A67del	GCT	---	8	8	B.1.2	0.00007
S	67	A67S	Gct	Tct	8	8	B.1.526	0.000188
S	67	A67S	Gct	Tct	8	8	C.36.3	0.004538
S	67	A67A	gcT	gcC	4	8	P.1	0.000063
S	67	A67A	gcT	gcA	3	8	P.1	0.000047
S	67	A67A	gcT	gcG	1	8	P.1	0.000016
S	67	A67L	GCT	TTA	4	7	All	0.000001
S	67	A67L	GCT	CTG	1	7	All	0
S	67	A67L	GCT	TTG	1	7	All	0
S	67	A67L	GCt	CTt	1	7	All	0
S	67	A67D	gCt	gAt	7	7	AY.25	0.000042
S	67	A67V	gCt	gTt	7	7	AY.32	0.003727
S	67	A67V	gCt	gTt	7	7	AY.33	0.000467
S	67	A67del	GCT	---	7	7	AY.42	0.000282
S	67	A67D	gCt	gAt	7	7	AY.43	0.000031
S	67	A67A	gcT	gcC	6	7	AY.43	0.000027
S	67	A67A	gcT	gcA	1	7	AY.43	0.000004
S	67	A67V	gCt	gTt	7	7	AY.5.4	0.001937
S	67	A67V	gCt	gTt	7	7	AY.7.1	0.000789
S	67	A67V	gCt	gTt	7	7	AY.9.1	0.000586
S	67	A67S	Gct	Tct	7	7	AY.96	0.014523
S	67	A67S	Gct	Tct	7	7	AY.99.2	0.000645
S	67	A67del	GCT	---	7	7	B.1.160	0.000218
S	67	A67V	gCt	gTt	7	7	B.1.177.73	0.003964
S	67	A67V	gCt	gTt	7	7	B.1.177.86	0.001284
S	67	A67A	gcT	gcA	4	7	B.1.2	0.000035
S	67	A67A	gcT	gcC	3	7	B.1.2	0.000026
S	67	A67V	gCt	gTt	7	7	B.1.362	0.010786
S	67	A67A	gcT	gcA	3	7	B.1.427	0.000151
S	67	A67A	gcT	gcG	2	7	B.1.427	0.000101
S	67	A67A	gcT	gcC	2	7	B.1.427	0.000101
S	67	A67V	gCt	gTt	7	7	B.1.588	0.006369
S	67	A67V	gCt	gTt	7	7	B.1.617.1	0.000903
S	67	A67S	Gct	Tct	7	7	B.1.91	0.014523
S	67	A67del	GCT	---	7	7	P.1	0.00011
S	67	A67S	Gct	Tct	7	7	Q.8	0.001154
S	67	A67del	GCT	---	6	6	AY.100	0.000276
S	67	A67del	GCT	---	6	6	AY.101	0.002943
S	67	A67V	gCt	gTt	6	6	AY.114	0.001387
S	67	A67del	GCT	---	6	6	AY.121	0.000812
S	67	A67S	Gct	Tct	6	6	AY.23	0.000418
S	67	A67A	gcT	gcC	6	6	AY.23	0.000418
S	67	A67V	gCt	gTt	6	6	AY.34.1	0.00306
S	67	A67V	gCt	gTt	6	6	AY.39.1	0.000238
S	67	A67D	gCt	gAt	6	6	AY.4	0.000009
S	67	A67V	gCt	gTt	6	6	AY.54	0.000572
S	67	A67V	gCt	gTt	6	6	AY.91	0.004383
S	67	A67V	gCt	gTt	6	6	AY.99.2	0.000553
S	67	A67del1	gcT	gc-	3	6	B.1	0.000027
S	67	A67del1	gCT	gT-	2	6	B.1	0.000018
S	67	A67del1	GCT	-YW	1	6	B.1	0.000009
S	67	A67V	gCt	gTt	6	6	B.1.1.263	0.009346
S	67	A67S	Gct	Tct	5	6	B.1.1.28	0.001556
S	67	A67S	GcT	TcA	1	6	B.1.1.28	0.000311
S	67	A67V	gCt	gTt	6	6	B.1.1.312	0.011472
S	67	A67S	Gct	Tct	6	6	B.1.160	0.000187
S	67	A67V	gCt	gTt	6	6	B.1.177.44	0.003114
S	67	A67V	gCt	gTt	6	6	B.1.177.60	0.001311
S	67	A67V	gCt	gTt	6	6	B.1.258.14	0.005882
S	67	A67V	gCt	gTt	6	6	B.1.36	0.000875
S	67	A67V	gCt	gTt	6	6	B.1.36.29	0.003104
S	67	A67S	Gct	Tct	5	5	AY.100	0.00023
S	67	A67V	gCt	gTt	5	5	AY.107	0.00233
S	67	A67V	gCt	gTt	5	5	AY.117	0.000423
S	67	A67S	Gct	Tct	5	5	AY.117	0.000423
S	67	A67del	GCT	---	5	5	AY.33	0.000334
S	67	A67del	GCT	---	5	5	AY.46	0.00052
S	67	A67S	Gct	Tct	5	5	AY.47	0.000156
S	67	A67P	Gct	Cct	5	5	AY.61	0.000524
S	67	A67V	gCt	gTt	5	5	AY.98.1	0.000242
S	67	A67A	gcT	gcC	5	5	B.1	0.000046
S	67	A67A	gcT	gcC	3	5	B.1.1	0.000054
S	67	A67A	gcT	gcA	1	5	B.1.1	0.000018
S	67	A67A	gcT	gcG	1	5	B.1.1	0.000018
S	67	A67S	Gct	Tct	5	5	B.1.1.174	0.016892
S	67	A67V	gCt	gTt	5	5	B.1.1.70	0.001705
S	67	A67S	Gct	Tct	5	5	B.1.177.86	0.000917
S	67	A67del1	gCT	gT-	5	5	B.1.525	0.000566
S	67	A67V	gCt	gTt	5	5	B.1.575	0.001517
S	67	A67V	gCt	gTt	5	5	B.1.576	0.004533
S	67	A67S	Gct	Tct	5	5	B.1.621	0.000443
S	67	A67S	Gct	Tct	5	5	P.1.7	0.001596
S	67	A67S	Gct	Tct	4	5	P.2	0.000747
S	67	A67S	GcT	TcA	1	5	P.2	0.000187
S	67	A67V	gCt	gTt	5	5	P.6	0.015723
S	67	A67V	gCt	gTt	5	5	Q.8	0.000825
S	67	A67V	gCt	gTt	5	5	W.1	0.043478
S	67	A67del	GCT	---	4	4		0.222222
S	67	A67del	GCT	---	4	4	AY.119	0.000141
S	67	A67A	gcT	gcG	2	4	AY.119	0.000071
S	67	A67A	gcT	gcA	1	4	AY.119	0.000035
S	67	A67A	gcT	gcC	1	4	AY.119	0.000035
S	67	A67S	Gct	Tct	4	4	AY.120	0.000149
S	67	A67del	GCT	---	4	4	AY.20	0.000155
S	67	A67V	gCt	gTt	4	4	AY.23	0.000279
S	67	A67S	Gct	Tct	4	4	AY.33	0.000267
S	67	A67del	GCT	---	4	4	AY.39	0.000099
S	67	A67del1	gcT	gc-	3	4	AY.4	0.000005
S	67	A67del1	Gct	-ct	1	4	AY.4	0.000002
S	67	A67del2	GCt	--t	4	4	AY.43	0.000018
S	67	A67del1	gcT	gc-	3	4	AY.44	0.000018
S	67	A67del1	GCT	-NN	1	4	AY.44	0.000006
S	67	A67V	gCt	gTt	4	4	AY.46.4	0.000658
S	67	A67del	GCT	---	4	4	AY.61	0.000419
S	67	A67V	gCt	gTt	4	4	AY.71	0.0019
S	67	A67V	gCt	gTt	4	4	AY.75.1	0.000721
S	67	A67del	GCT	---	4	4	AY.85	0.001709
S	67	A67del	GCT	---	4	4	AY.9.2	0.000147
S	67	A67S	Gct	Tct	4	4	AY.98.1	0.000194
S	67	A67del	GCT	---	4	4	AY.99.2	0.000369
S	67	A67V	gCt	gTt	4	4	B	0.000511
S	67	A67del1	gcT	gc-	4	4	B.1.1	0.000073
S	67	A67S	Gct	Tct	4	4	B.1.1.163	0.030534
S	67	A67S	Gct	Tct	4	4	B.1.1.176	0.001757
S	67	A67V	gCt	gTt	4	4	B.1.1.214	0.000222
S	67	A67V	gCt	gTt	4	4	B.1.1.222	0.000816
S	67	A67S	Gct	Tct	4	4	B.1.1.294	0.005063
S	67	A67V	gCt	gTt	4	4	B.1.1.512	0.114286
S	67	A67P	Gct	Cct	4	4	B.1.1.7	0.000004
S	67	A67del	GCT	---	4	4	B.1.108	0.023256
S	67	A67T	Gct	Act	4	4	B.1.164	0.059701
S	67	A67V	gCt	gTt	4	4	B.1.177.32	0.005398
S	67	A67V	gCt	gTt	4	4	B.1.177.33	0.006579
S	67	A67S	Gct	Tct	4	4	B.1.177.48	0.0125
S	67	A67V	gCt	gTt	4	4	B.1.177.56	0.00267
S	67	A67del	GCT	---	4	4	B.1.221	0.000284
S	67	A67del1	gCT	gT-	4	4	B.1.258.22	0.010667
S	67	A67S	Gct	Tct	4	4	B.1.311	0.001098
S	67	A67V	gCt	gTt	4	4	B.1.337	0.022346
S	67	A67del	GCT	---	4	4	B.1.525	0.000453
S	67	A67S	Gct	Tct	4	4	B.1.566	0.076923
S	67	A67D	gCt	gAt	4	4	B.1.617.2	0.000015
S	67	A67V	gCt	gTt	4	4	D.2	0.0003
S	67	A67S	Gct	Tct	4	4	P.1.12	0.001936
S	67	A67S	Gct	Tct	4	4	P.1.14	0.000191
S	67	A67S	Gct	Tct	4	4	P.1.17	0.000647
S	67	A67V	gCt	gTt	3	4	P.2	0.00056
S	67	A67V	gCT	gTA	1	4	P.2	0.000187
S	67	A67V	gCt	gTt	4	4	Q.1	0.000505
S	67	A67A	gcT	gcC	3	3		0.166667
S	67	A67S	Gct	Tct	2	3		0.111111
S	67	A67S	GcT	TcC	1	3		0.055556
S	67	A67V	gCt	gTt	3	3	A.2.5.3	0.030928
S	67	A67V	gCt	gTt	3	3	A.23.1	0.002113
S	67	A67del	GCT	---	3	3	AY.113	0.000427
S	67	A67P	Gct	Cct	3	3	AY.113	0.000427
S	67	A67V	gCt	gTt	3	3	AY.116	0.00086
S	67	A67V	gCt	gTt	3	3	AY.118	0.000188
S	67	A67del	GCT	---	3	3	AY.118	0.000188
S	67	A67del	GCT	---	3	3	AY.12	0.000948
S	67	A67V	gCt	gTt	3	3	AY.121	0.000406
S	67	A67S	Gct	Tct	3	3	AY.14	0.000264
S	67	A67D	gCt	gAt	3	3	AY.3	0.00003
S	67	A67A	gcT	gcC	1	3	AY.3	0.00001
S	67	A67A	gcT	gcA	1	3	AY.3	0.00001
S	67	A67A	gcT	gcG	1	3	AY.3	0.00001
S	67	A67S	Gct	Tct	2	3	AY.30	0.000791
S	67	A67S	GcT	TcA	1	3	AY.30	0.000396
S	67	A67del	GCT	---	3	3	AY.38	0.001498
S	67	A67del	GCT	---	3	3	AY.39.1	0.000119
S	67	A67V	gCt	gTt	3	3	AY.4.5	0.000322
S	67	A67S	Gct	Tct	3	3	AY.42	0.000121
S	67	A67T	Gct	Act	3	3	AY.43	0.000013
S	67	A67T	Gct	Act	3	3	AY.44	0.000018
S	67	A67S	Gct	Tct	3	3	AY.5.4	0.00083
S	67	A67V	gCt	gTt	3	3	AY.58	0.002722
S	67	A67S	Gct	Tct	3	3	AY.61	0.000314
S	67	A67V	gCt	gTt	3	3	AY.65	0.001599
S	67	A67V	gCt	gTt	3	3	AY.74	0.000347
S	67	A67del	GCT	---	3	3	AY.75.1	0.000541
S	67	A67del	GCT	---	3	3	AY.9.1	0.000251
S	67	A67del	GCT	---	3	3	AY.98.1	0.000145
S	67	A67V	gCt	gTt	3	3	AY.99	0.003148
S	67	A67D	gCt	gAt	3	3	B.1	0.000027
S	67	A67T	Gct	Act	3	3	B.1.1	0.000054
S	67	A67A	gcT	gcC	3	3	B.1.1.1	0.00098
S	67	A67V	gCt	gTt	3	3	B.1.1.186	0.010309
S	67	A67S	Gct	Tct	3	3	B.1.1.196	0.017143
S	67	A67V	gCt	gTt	2	3	B.1.1.28	0.000622
S	67	A67V	gCT	gTA	1	3	B.1.1.28	0.000311
S	67	A67V	gCt	gTt	3	3	B.1.1.284	0.000322
S	67	A67V	gCt	gTt	3	3	B.1.1.311	0.001074
S	67	A67A	gcT	gcG	2	3	B.1.1.33	0.000842
S	67	A67S	Gct	Tct	1	3	B.1.1.33	0.000421
S	67	A67A	gcT	gcC	1	3	B.1.1.33	0.000421
S	67	A67S	GcT	TcG	1	3	B.1.1.33	0.000421
S	67	A67L	GCt	CTt	1	3	B.1.1.33	0.000421
S	67	A67L	GCT	TTG	1	3	B.1.1.33	0.000421
S	67	A67S	GCt	AGt	1	3	B.1.1.33	0.000421
S	67	A67L	GCT	CTG	1	3	B.1.1.33	0.000421
S	67	A67V	gCt	gTt	3	3	B.1.1.37	0.000579
S	67	A67V	gCt	gTt	3	3	B.1.1.391	0.025641
S	67	A67A	gcT	gcC	3	3	B.1.1.519	0.000119
S	67	A67S	Gct	Tct	3	3	B.1.1.523	0.004687
S	67	A67T	Gct	Act	3	3	B.1.1.523	0.004687
S	67	A67V	gCt	gTt	3	3	B.1.160.22	0.02027
S	67	A67S	Gct	Tct	3	3	B.1.160.7	0.006237
S	67	A67A	gcT	gcC	3	3	B.1.177	0.00004
S	67	A67T	Gct	Act	3	3	B.1.177.7	0.000495
S	67	A67S	Gct	Tct	3	3	B.1.177.73	0.001699
S	67	A67V	gCt	gTt	3	3	B.1.177.79	0.007026
S	67	A67S	Gct	Tct	3	3	B.1.177.81	0.000568
S	67	A67del1	gcT	gc-	2	3	B.1.2	0.000018
S	67	A67del1	GCT	-NN	1	3	B.1.2	0.000009
S	67	A67T	Gct	Act	3	3	B.1.221	0.000213
S	67	A67S	Gct	Tct	3	3	B.1.240	0.000647
S	67	A67V	gCt	gTt	3	3	B.1.258.17	0.000312
S	67	A67A	gcT	gcA	2	3	B.1.351	0.000059
S	67	A67A	gcT	gcC	1	3	B.1.351	0.00003
S	67	A67V	gCt	gTt	3	3	B.1.448	0.007874
S	67	A67V	gCt	gTt	3	3	B.1.465	0.011407
S	67	A67V	gCt	gTt	3	3	B.1.468	0.017143
S	67	A67V	gCt	gTt	3	3	B.1.637	0.000219
S	67	A67S	Gct	Tct	3	3	B.1.637	0.000219
S	67	A67S	Gct	Tct	3	3	B.6	0.00273
S	67	A67T	Gct	Act	3	3	P.1	0.000047
S	67	A67P	Gct	Cct	3	3	P.1	0.000047
S	67	A67S	Gct	Tct	3	3	P.1.2	0.003468
S	67	A67P	Gct	Cct	2	2		0.111111
S	67	A67T	Gct	Act	2	2		0.111111
S	67	A67del1	gcT	gc-	1	2		0.055556
S	67	A67del1	GCT	KB-	1	2		0.055556
S	67	A67Y	GCt	TAt	2	2	All	0
S	67	A67N	GCT	AAC	1	2	All	0
S	67	A67N	GCt	AAt	1	2	All	0
S	67	A67del	GCT	---	2	2	AY.108	0.002205
S	67	A67del	GCT	---	2	2	AY.111	0.000366
S	67	A67del	GCT	---	2	2	AY.117	0.000169
S	67	A67D	gCt	gAt	2	2	AY.117	0.000169
S	67	A67S	Gct	Tct	2	2	AY.118	0.000125
S	67	A67del	GCT	---	2	2	AY.120	0.000074
S	67	A67A	gcT	gcC	2	2	AY.120	0.000074
S	67	A67V	gCt	gTt	2	2	AY.120.2.1	0.000997
S	67	A67del2	gCT	g--	2	2	AY.25	0.000012
S	67	A67A	gcT	gcC	2	2	AY.25	0.000012
S	67	A67del1	GcT	Nc-	1	2	AY.25	0.000006
S	67	A67del1	gcT	gc-	1	2	AY.25	0.000006
S	67	A67S	Gct	Tct	2	2	AY.27	0.000129
S	67	A67T	GcT	AcG	1	2	AY.3	0.00001
S	67	A67T	GcT	AcA	1	2	AY.3	0.00001
S	67	A67del	GCT	---	2	2	AY.3.1	0.000171
S	67	A67G	gCT	gGA	1	2	AY.30	0.000396
S	67	A67G	gCt	gGt	1	2	AY.30	0.000396
S	67	A67S	Gct	Tct	2	2	AY.34	0.000194
S	67	A67V	gCt	gTt	2	2	AY.34	0.000194
S	67	A67S	Gct	Tct	2	2	AY.34.1	0.00102
S	67	A67A	gcT	gcC	2	2	AY.39	0.000049
S	67	A67T	Gct	Act	2	2	AY.4	0.000003
S	67	A67S	Gct	Tct	2	2	AY.4.5	0.000215
S	67	A67del1	GCT	-YW	1	2	AY.43	0.000004
S	67	A67del1	gcT	gc-	1	2	AY.43	0.000004
S	67	A67D	gCt	gAt	2	2	AY.44	0.000012
S	67	A67S	Gct	Tct	2	2	AY.46.5	0.000397
S	67	A67V	gCt	gTt	2	2	AY.46.6	0.000144
S	67	A67del1	gcT	gc-	1	2	AY.5	0.000021
S	67	A67del1	Gct	-ct	1	2	AY.5	0.000021
S	67	A67V	gCt	gTt	2	2	AY.5.2	0.004926
S	67	A67S	Gct	Tct	2	2	AY.5.3	0.000675
S	67	A67del	GCT	---	2	2	AY.52	0.001629
S	67	A67del	GCT	---	2	2	AY.54	0.000191
S	67	A67S	Gct	Tct	2	2	AY.54	0.000191
S	67	A67T	Gct	Act	2	2	AY.59	0.001059
S	67	A67del	GCT	---	2	2	AY.6	0.000082
S	67	A67S	Gct	Tct	2	2	AY.67	0.000929
S	67	A67V	gCt	gTt	2	2	AY.69	0.000373
S	67	A67V	gCt	gTt	2	2	AY.7	0.000392
S	67	A67V	gCt	gTt	2	2	AY.7.2	0.001119
S	67	A67del	GCT	---	2	2	AY.7.2	0.001119
S	67	A67del	GCT	---	2	2	AY.71	0.00095
S	67	A67D	gCt	gAt	2	2	AY.75	0.000112
S	67	A67del	GCT	---	2	2	AY.75	0.000112
S	67	A67V	gCt	gTt	2	2	AY.85	0.000854
S	67	A67del1	gcT	gc-	2	2	AY.9	0.000135
S	67	A67V	gCt	gTt	2	2	AY.92	0.000575
S	67	A67del	GCT	---	2	2	AY.94	0.000885
S	67	A67del1	Gct	-ct	1	2	AY.96	0.002075
S	67	A67del1	gcT	gc-	1	2	AY.96	0.002075
S	67	A67S	Gct	Tct	2	2	AY.98	0.000158
S	67	A67T	Gct	Act	2	2	B.1	0.000018
S	67	A67V	gCt	gTt	2	2	B.1.1.231	0.006192
S	67	A67A	gcT	gcC	2	2	B.1.1.306	0.000877
S	67	A67P	GcT	CcG	1	2	B.1.1.33	0.000421
S	67	A67V	gCT	gTG	1	2	B.1.1.33	0.000421
S	67	A67P	Gct	Cct	1	2	B.1.1.33	0.000421
S	67	A67G	gCt	gGt	1	2	B.1.1.33	0.000421
S	67	A67V	gCt	gTt	1	2	B.1.1.33	0.000421
S	67	A67G	gCT	gGG	1	2	B.1.1.33	0.000421
S	67	A67T	GcT	AcG	1	2	B.1.1.33	0.000421
S	67	A67T	Gct	Act	1	2	B.1.1.33	0.000421
S	67	A67V	gCt	gTt	2	2	B.1.170	0.008621
S	67	A67T	Gct	Act	2	2	B.1.177	0.000026
S	67	A67V	gCt	gTt	2	2	B.1.177.12	0.000303
S	67	A67V	gCt	gTt	2	2	B.1.177.21	0.000153
S	67	A67V	gCt	gTt	2	2	B.1.177.57	0.000562
S	67	A67S	Gct	Tct	2	2	B.1.177.60	0.000437
S	67	A67del	GCT	---	2	2	B.1.177.81	0.000379
S	67	A67del	GCT	---	2	2	B.1.179	0.007519
S	67	A67P	Gct	Cct	2	2	B.1.2	0.000018
S	67	A67G	gCt	gGt	2	2	B.1.2	0.000018
S	67	A67D	gCt	gAt	2	2	B.1.2	0.000018
S	67	A67V	gCt	gTt	2	2	B.1.221	0.000142
S	67	A67V	gCt	gTt	2	2	B.1.232	0.001075
S	67	A67V	gCt	gTt	2	2	B.1.240	0.000431
S	67	A67S	Gct	Tct	2	2	B.1.243	0.000139
S	67	A67del	GCT	---	2	2	B.1.258	0.000133
S	67	A67T	Gct	Act	2	2	B.1.258.17	0.000208
S	67	A67S	Gct	Tct	2	2	B.1.279	0.001027
S	67	A67V	gCt	gTt	2	2	B.1.311	0.000549
S	67	A67V	gCt	gTt	2	2	B.1.349	0.00143
S	67	A67del	GCT	---	2	2	B.1.351	0.000059
S	67	A67S	Gct	Tct	2	2	B.1.351.2	0.000605
S	67	A67S	Gct	Tct	2	2	B.1.36	0.000292
S	67	A67V	gCt	gTt	2	2	B.1.36.17	0.000988
S	67	A67V	gCt	gTt	2	2	B.1.369	0.00057
S	67	A67V	gCt	gTt	2	2	B.1.399	0.003868
S	67	A67V	gCt	gTt	2	2	B.1.426	0.002018
S	67	A67T	Gct	Act	2	2	B.1.429	0.000047
S	67	A67S	Gct	Tct	2	2	B.1.429	0.000047
S	67	A67V	gCt	gTt	2	2	B.1.497	0.00063
S	67	A67V	gCt	gTt	2	2	B.1.517	0.000854
S	67	A67F	GCt	TTt	2	2	B.1.525	0.000226
S	67	A67T	Gct	Act	2	2	B.1.526	0.000047
S	67	A67V	gCt	gTt	2	2	B.1.560	0.009259
S	67	A67V	gCt	gTt	2	2	B.1.567	0.006667
S	67	A67V	gCt	gTt	2	2	B.1.582	0.000981
S	67	A67V	gCt	gTt	2	2	B.1.595	0.000522
S	67	A67V	gCt	gTt	2	2	B.1.609	0.000959
S	67	A67T	Gct	Act	2	2	B.1.617.2	0.000008
S	67	A67A	gcT	gcC	2	2	B.1.617.2	0.000008
S	67	A67V	gCt	gTt	2	2	B.1.619	0.001742
S	67	A67S	Gct	Tct	2	2	B.1.621.1	0.001012
S	67	A67S	Gct	Tct	2	2	B.1.627	0.00404
S	67	A67V	gCt	gTt	2	2	B.1.630	0.010471
S	67	A67S	Gct	Tct	2	2	B.40	0.000729
S	67	A67V	gCt	gTt	2	2	C.1.2	0.008511
S	67	A67S	Gct	Tct	2	2	C.37	0.000232
S	67	A67S	Gct	Tct	2	2	D.2	0.00015
S	67	A67F	GCt	TTt	2	2	P.1	0.000032
S	67	A67L	GCT	TTA	2	2	P.1	0.000032
S	67	A67D	gCt	gAt	2	2	P.1	0.000032
S	67	A67del	GCT	---	2	2	P.1.12	0.000968
S	67	A67S	Gct	Tct	2	2	P.1.13	0.001797
S	67	A67A	gcT	gcC	2	2	P.1.15	0.000465
S	67	A67S	Gct	Tct	2	2	P.1.17.1	0.00175
S	67	A67S	Gct	Tct	2	2	P.3	0.00319
S	67	A67V	gCt	gTt	2	2	P.3	0.00319
S	67	A67S	Gct	Tct	2	2	Q.1	0.000253
S	67	A67S	Gct	Tct	2	2	Q.7	0.002222
S	67	A67del	GCT	---	2	2	R.1	0.00018
S	67	A67V	gCt	gTt	1	1	A	0.000387
S	67	A67S	Gct	Tct	1	1	A	0.000387
S	67	A67D	gCt	gAt	1	1	A.2.5	0.000499
S	67	A67S	Gct	Tct	1	1	AA.2	0.007692
S	67	A67V	gCt	gTt	1	1	AD.2	0.000219
S	67	A67V	gCt	gTt	1	1	AK.1	0.012658
S	67	A67R	GCT	AGG	1	1	All	0
S	67	A67W	GCT	TGG	1	1	All	0
S	67	A67K	GCT	AAA	1	1	All	0
S	67	A67C	GCt	TGt	1	1	All	0
S	67	A67M	GCT	ATG	1	1	All	0
S	67	A67H	GCt	CAt	1	1	All	0
S	67	A67X	GCT	TGA	1	1	All	0
S	67	A67E	gCT	gAG	1	1	All	0
S	67	A67V	gCt	gTt	1	1	AM.4	0.003571
S	67	A67del1	gcT	gc-	1	1	AT.1	0.005128
S	67	A67V	gCt	gTt	1	1	AU.1	0.001266
S	67	A67V	gCt	gTt	1	1	AY.1	0.000396
S	67	A67V	gCt	gTt	1	1	AY.10	0.00053
S	67	A67A	gcT	gcC	1	1	AY.100	0.000046
S	67	A67del1	gcT	gc-	1	1	AY.102	0.000027
S	67	A67G	gCt	gGt	1	1	AY.102	0.000027
S	67	A67A	gcT	gcC	1	1	AY.102	0.000027
S	67	A67D	gCt	gAt	1	1	AY.102	0.000027
S	67	A67T	Gct	Act	1	1	AY.103	0.000006
S	67	A67del2	GCt	--t	1	1	AY.103	0.000006
S	67	A67S	Gct	Tct	1	1	AY.104	0.001984
S	67	A67del	GCT	---	1	1	AY.105	0.000643
S	67	A67S	Gct	Tct	1	1	AY.106	0.000335
S	67	A67S	Gct	Tct	1	1	AY.107	0.000466
S	67	A67V	gCt	gTt	1	1	AY.11	0.001339
S	67	A67P	GcT	CcG	1	1	AY.110	0.000113
S	67	A67A	gcT	gcG	1	1	AY.110	0.000113
S	67	A67V	gCt	gTt	1	1	AY.111	0.000183
S	67	A67S	Gct	Tct	1	1	AY.114	0.000231
S	67	A67D	gCt	gAt	1	1	AY.119	0.000035
S	67	A67D	gCt	gAt	1	1	AY.120	0.000037
S	67	A67del1	gcT	gc-	1	1	AY.120	0.000037
S	67	A67S	Gct	Tct	1	1	AY.121	0.000135
S	67	A67A	gcT	gcC	1	1	AY.13	0.000161
S	67	A67del1	GcT	-cN	1	1	AY.14	0.000088
S	67	A67S	Gct	Tct	1	1	AY.19	0.00114
S	67	A67V	gCt	gTt	1	1	AY.21	0.001898
S	67	A67D	gCt	gAt	1	1	AY.23	0.00007
S	67	A67del	GCT	---	1	1	AY.24	0.000431
S	67	A67T	Gct	Act	1	1	AY.25	0.000006
S	67	A67del2	gCT	g--	1	1	AY.26	0.000028
S	67	A67A	gcT	gcC	1	1	AY.27	0.000065
S	67	A67del	GCT	---	1	1	AY.29	0.000016
S	67	A67V	gCt	gTt	1	1	AY.29.1	0.000221
S	67	A67P	Gct	Cct	1	1	AY.3.1	0.000085
S	67	A67D	gCt	gAt	1	1	AY.3.1	0.000085
S	67	A67A	gcT	gcC	1	1	AY.3.1	0.000085
S	67	A67X	GCT	TGA	1	1	AY.30	0.000396
S	67	A67del	GCT	---	1	1	AY.30	0.000396
S	67	A67A	gcT	gcA	1	1	AY.30	0.000396
S	67	A67C	GCt	TGt	1	1	AY.30	0.000396
S	67	A67del	GCT	---	1	1	AY.34	0.000097
S	67	A67S	Gct	Tct	1	1	AY.36	0.000148
S	67	A67D	gCt	gAt	1	1	AY.36	0.000148
S	67	A67S	Gct	Tct	1	1	AY.37	0.000316
S	67	A67D	gCt	gAt	1	1	AY.39	0.000025
S	67	A67A	gcT	gcC	1	1	AY.39.1	0.00004
S	67	A67S	Gct	Tct	1	1	AY.39.1	0.00004
S	67	A67D	gCt	gAt	1	1	AY.39.2	0.001541
S	67	A67del	GCT	---	1	1	AY.39.2	0.001541
S	67	A67S	Gct	Tct	1	1	AY.39.2	0.001541
S	67	A67V	gCt	gTt	1	1	AY.39.2	0.001541
S	67	A67Y	GCt	TAt	1	1	AY.39.2	0.001541
S	67	A67G	gCt	gGt	1	1	AY.4	0.000002
S	67	A67del2	GCt	--t	1	1	AY.4	0.000002
S	67	A67P	Gct	Cct	1	1	AY.4	0.000002
S	67	A67S	Gct	Tct	1	1	AY.4.1	0.000737
S	67	A67A	gcT	gcC	1	1	AY.4.2	0.000022
S	67	A67del	GCT	---	1	1	AY.4.2	0.000022
S	67	A67del	GCT	---	1	1	AY.4.2.1	0.000149
S	67	A67del	GCT	---	1	1	AY.4.4	0.000409
S	67	A67S	Gct	Tct	1	1	AY.4.4	0.000409
S	67	A67V	gCt	gTt	1	1	AY.40	0.000964
S	67	A67del1	gcT	gc-	1	1	AY.42	0.00004
S	67	A67N	GCT	AAC	1	1	AY.43	0.000004
S	67	A67del2	GCt	--t	1	1	AY.44	0.000006
S	67	A67E	gCT	gAG	1	1	AY.44	0.000006
S	67	A67P	Gct	Cct	1	1	AY.44	0.000006
S	67	A67S	Gct	Tct	1	1	AY.45	0.000122
S	67	A67D	gCt	gAt	1	1	AY.46	0.000104
S	67	A67del1	GCT	-NN	1	1	AY.46	0.000104
S	67	A67V	gCt	gTt	1	1	AY.46.2	0.000635
S	67	A67T	Gct	Act	1	1	AY.46.2	0.000635
S	67	A67del	GCT	---	1	1	AY.46.5	0.000198
S	67	A67P	Gct	Cct	1	1	AY.46.6	0.000072
S	67	A67del	GCT	---	1	1	AY.46.6	0.000072
S	67	A67S	Gct	Tct	1	1	AY.46.6	0.000072
S	67	A67del1	gcT	gc-	1	1	AY.47	0.000031
S	67	A67P	Gct	Cct	1	1	AY.47	0.000031
S	67	A67V	gCt	gTt	1	1	AY.48	0.000465
S	67	A67T	Gct	Act	1	1	AY.49	0.003195
S	67	A67A	gcT	gcG	1	1	AY.5	0.000021
S	67	A67G	gCt	gGt	1	1	AY.5	0.000021
S	67	A67del	GCT	---	1	1	AY.5.3	0.000337
S	67	A67del	GCT	---	1	1	AY.5.4	0.000277
S	67	A67del1	gCt	g-t	1	1	AY.50	0.000799
S	67	A67A	gcT	gcC	1	1	AY.51	0.000909
S	67	A67T	Gct	Act	1	1	AY.54	0.000095
S	67	A67S	Gct	Tct	1	1	AY.55	0.000917
S	67	A67D	gCt	gAt	1	1	AY.56	0.001605
S	67	A67V	gCt	gTt	1	1	AY.57	0.000656
S	67	A67S	Gct	Tct	1	1	AY.58	0.000907
S	67	A67H	GCt	CAt	1	1	AY.59	0.00053
S	67	A67del	GCT	---	1	1	AY.59	0.00053
S	67	A67V	gCt	gTt	1	1	AY.59	0.00053
S	67	A67P	Gct	Cct	1	1	AY.59	0.00053
S	67	A67del1	gcT	gc-	1	1	AY.6	0.000041
S	67	A67T	Gct	Act	1	1	AY.6	0.000041
S	67	A67del	GCT	---	1	1	AY.60	0.000938
S	67	A67T	Gct	Act	1	1	AY.60	0.000938
S	67	A67A	gcT	gcC	1	1	AY.64	0.000595
S	67	A67del	GCT	---	1	1	AY.64	0.000595
S	67	A67T	Gct	Act	1	1	AY.66	0.00107
S	67	A67del	GCT	---	1	1	AY.67	0.000464
S	67	A67del1	GCt	-At	1	1	AY.67	0.000464
S	67	A67del	GCT	---	1	1	AY.68	0.000274
S	67	A67del	GCT	---	1	1	AY.70	0.000209
S	67	A67D	gCt	gAt	1	1	AY.71	0.000475
S	67	A67del1	gcT	gc-	1	1	AY.71	0.000475
S	67	A67V	gCt	gTt	1	1	AY.72	0.001361
S	67	A67del	GCT	---	1	1	AY.72	0.001361
S	67	A67del	GCT	---	1	1	AY.73	0.000665
S	67	A67del	GCT	---	1	1	AY.74	0.000116
S	67	A67del1	gcT	gc-	1	1	AY.75	0.000056
S	67	A67del2	gCT	g--	1	1	AY.75	0.000056
S	67	A67V	gCt	gTt	1	1	AY.76	0.004831
S	67	A67V	gCt	gTt	1	1	AY.78	0.001541
S	67	A67V	gCt	gTt	1	1	AY.79	0.001211
S	67	A67M	GCT	ATG	1	1	AY.79	0.001211
S	67	A67V	gCt	gTt	1	1	AY.8	0.000606
S	67	A67D	gCt	gAt	1	1	AY.8	0.000606
S	67	A67V	gCt	gTt	1	1	AY.82	0.001357
S	67	A67del	GCT	---	1	1	AY.84	0.000437
S	67	A67V	gCt	gTt	1	1	AY.84	0.000437
S	67	A67A	gcT	gcC	1	1	AY.85	0.000427
S	67	A67S	Gct	Tct	1	1	AY.85	0.000427
S	67	A67V	gCt	gTt	1	1	AY.86	0.00083
S	67	A67T	Gct	Act	1	1	AY.9	0.000068
S	67	A67A	gcT	gcC	1	1	AY.9.2	0.000037
S	67	A67G	gCt	gGt	1	1	AY.9.2	0.000037
S	67	A67S	Gct	Tct	1	1	AY.91	0.00073
S	67	A67S	Gct	Tct	1	1	AY.92	0.000287
S	67	A67del1	GCT	-NN	1	1	AY.92	0.000287
S	67	A67S	Gct	Tct	1	1	AY.93	0.000273
S	67	A67V	gCt	gTt	1	1	AY.94	0.000443
S	67	A67del1	gcT	gc-	1	1	AY.94	0.000443
S	67	A67S	Gct	Tct	1	1	AY.94	0.000443
S	67	A67T	Gct	Act	1	1	AY.98.1	0.000048
S	67	A67del	GCT	---	1	1	AY.99	0.001049
S	67	A67del	GCT	---	1	1	AZ.2	0.000821
S	67	A67S	Gct	Tct	1	1	B	0.000128
S	67	A67G	gCt	gGt	1	1	B	0.000128
S	67	A67G	gCt	gGt	1	1	B.1.1	0.000018
S	67	A67del2	GCt	--t	1	1	B.1.1	0.000018
S	67	A67D	gCt	gAt	1	1	B.1.1	0.000018
S	67	A67S	Gct	Tct	1	1	B.1.1.1	0.000327
S	67	A67V	gCt	gTt	1	1	B.1.1.1	0.000327
S	67	A67del	GCT	---	1	1	B.1.1.118	0.010204
S	67	A67del	GCT	---	1	1	B.1.1.148	0.008772
S	67	A67V	gCt	gTt	1	1	B.1.1.157	0.000913
S	67	A67S	Gct	Tct	1	1	B.1.1.161	0.003534
S	67	A67V	gCt	gTt	1	1	B.1.1.163	0.007634
S	67	A67S	Gct	Tct	1	1	B.1.1.207	0.001182
S	67	A67V	gCt	gTt	1	1	B.1.1.216	0.00089
S	67	A67del	GCT	---	1	1	B.1.1.216	0.00089
S	67	A67T	Gct	Act	1	1	B.1.1.220	0.001859
S	67	A67P	Gct	Cct	1	1	B.1.1.222	0.000204
S	67	A67S	Gct	Tct	1	1	B.1.1.222	0.000204
S	67	A67V	gCt	gTt	1	1	B.1.1.228	0.003049
S	67	A67T	Gct	Act	1	1	B.1.1.262	0.015152
S	67	A67del	GCT	---	1	1	B.1.1.263	0.001558
S	67	A67V	gCt	gTt	1	1	B.1.1.277	0.000759
S	67	A67A	gcT	gcA	1	1	B.1.1.279	0.001121
S	67	A67F	GCt	TTt	1	1	B.1.1.28	0.000311
S	67	A67A	gcT	gcA	1	1	B.1.1.28	0.000311
S	67	A67L	GCT	TTA	1	1	B.1.1.28	0.000311
S	67	A67del1	gcT	gc-	1	1	B.1.1.284	0.000107
S	67	A67V	gCt	gTt	1	1	B.1.1.291	0.000742
S	67	A67V	gCt	gTt	1	1	B.1.1.294	0.001266
S	67	A67V	gCt	gTt	1	1	B.1.1.297	0.002237
S	67	A67V	gCt	gTt	1	1	B.1.1.3	0.008696
S	67	A67S	Gct	Tct	1	1	B.1.1.305	0.003861
S	67	A67V	gCt	gTt	1	1	B.1.1.306	0.000438
S	67	A67del	GCT	---	1	1	B.1.1.306	0.000438
S	67	A67T	Gct	Act	1	1	B.1.1.306	0.000438
S	67	A67del	GCT	---	1	1	B.1.1.311	0.000358
S	67	A67del	GCT	---	1	1	B.1.1.312	0.001912
S	67	A67del	GCT	---	1	1	B.1.1.315	0.008475
S	67	A67V	gCt	gTt	1	1	B.1.1.317	0.000412
S	67	A67S	Gct	Tct	1	1	B.1.1.317	0.000412
S	67	A67del	GCT	---	1	1	B.1.1.318	0.000302
S	67	A67R	GCT	AGG	1	1	B.1.1.33	0.000421
S	67	A67F	GCt	TTt	1	1	B.1.1.33	0.000421
S	67	A67S	Gct	Tct	1	1	B.1.1.347	0.018182
S	67	A67V	gCt	gTt	1	1	B.1.1.359	0.027778
S	67	A67del	GCT	---	1	1	B.1.1.361	0.045455
S	67	A67S	Gct	Tct	1	1	B.1.1.369	0.000446
S	67	A67A	gcT	gcC	1	1	B.1.1.37	0.000193
S	67	A67S	Gct	Tct	1	1	B.1.1.37	0.000193
S	67	A67V	gCt	gTt	1	1	B.1.1.376	0.005952
S	67	A67V	gCt	gTt	1	1	B.1.1.377	0.001381
S	67	A67V	gCt	gTt	1	1	B.1.1.385	0.004464
S	67	A67V	gCt	gTt	1	1	B.1.1.389	0.006061
S	67	A67G	gCt	gGt	1	1	B.1.1.39	0.00051
S	67	A67V	gCt	gTt	1	1	B.1.1.404	0.015873
S	67	A67V	gCt	gTt	1	1	B.1.1.416	0.000905
S	67	A67S	Gct	Tct	1	1	B.1.1.420	0.001006
S	67	A67del	GCT	---	1	1	B.1.1.424	0.045455
S	67	A67V	gCt	gTt	1	1	B.1.1.432	0.001266
S	67	A67A	gcT	gcA	1	1	B.1.1.434	0.000349
S	67	A67del	GCT	---	1	1	B.1.1.434	0.000349
S	67	A67T	Gct	Act	1	1	B.1.1.434	0.000349
S	67	A67D	gCt	gAt	1	1	B.1.1.464	0.001473
S	67	A67V	gCt	gTt	1	1	B.1.1.518	0.006329
S	67	A67del	GCT	---	1	1	B.1.1.523	0.001563
S	67	A67S	Gct	Tct	1	1	B.1.1.528	0.004808
S	67	A67V	gCt	gTt	1	1	B.1.1.528	0.004808
S	67	A67V	gCt	gTt	1	1	B.1.1.54	0.003021
S	67	A67T	Gct	Act	1	1	B.1.1.63	0.000386
S	67	A67S	Gct	Tct	1	1	B.1.1.63	0.000386
S	67	A67W	GCT	TGG	1	1	B.1.1.7	0.000001
S	67	A67del2	GCT	A--	1	1	B.1.1.7	0.000001
S	67	A67del	GCT	---	1	1	B.1.1.70	0.000341
S	67	A67V	gCt	gTt	1	1	B.1.110.3	0.000718
S	67	A67V	gCt	gTt	1	1	B.1.111	0.001175
S	67	A67A	gcT	gcC	1	1	B.1.126	0.001276
S	67	A67V	gCt	gTt	1	1	B.1.131	0.008772
S	67	A67V	gCt	gTt	1	1	B.1.139	0.000733
S	67	A67A	gcT	gcC	1	1	B.1.160	0.000031
S	67	A67T	Gct	Act	1	1	B.1.160.26	0.002421
S	67	A67del	GCT	---	1	1	B.1.160.32	0.004292
S	67	A67V	gCt	gTt	1	1	B.1.177.11	0.001698
S	67	A67del	GCT	---	1	1	B.1.177.15	0.000631
S	67	A67del	GCT	---	1	1	B.1.177.16	0.000664
S	67	A67del	GCT	---	1	1	B.1.177.17	0.000821
S	67	A67del	GCT	---	1	1	B.1.177.18	0.00116
S	67	A67del	GCT	---	1	1	B.1.177.21	0.000076
S	67	A67V	gCt	gTt	1	1	B.1.177.23	0.003236
S	67	A67del	GCT	---	1	1	B.1.177.4	0.000211
S	67	A67V	gCt	gTt	1	1	B.1.177.43	0.001477
S	67	A67S	Gct	Tct	1	1	B.1.177.44	0.000519
S	67	A67del	GCT	---	1	1	B.1.177.51	0.004566
S	67	A67del	GCT	---	1	1	B.1.177.56	0.000668
S	67	A67T	Gct	Act	1	1	B.1.177.56	0.000668
S	67	A67del	GCT	---	1	1	B.1.177.57	0.000281
S	67	A67D	gCt	gAt	1	1	B.1.177.60	0.000218
S	67	A67V	gCt	gTt	1	1	B.1.177.77	0.000726
S	67	A67del	GCT	---	1	1	B.1.177.77	0.000726
S	67	A67del	GCT	---	1	1	B.1.177.83	0.001481
S	67	A67S	Gct	Tct	1	1	B.1.195	0.005025
S	67	A67P	Gct	Cct	1	1	B.1.210	0.002132
S	67	A67V	gCt	gTt	1	1	B.1.212	0.016667
S	67	A67V	gCt	gTt	1	1	B.1.214	0.003663
S	67	A67S	Gct	Tct	1	1	B.1.214.2	0.0006
S	67	A67S	Gct	Tct	1	1	B.1.221	0.000071
S	67	A67S	Gct	Tct	1	1	B.1.234	0.000132
S	67	A67del	GCT	---	1	1	B.1.239	0.001221
S	67	A67V	gCt	gTt	1	1	B.1.241	0.000812
S	67	A67V	gCt	gTt	1	1	B.1.247	0.014925
S	67	A67D	gCt	gAt	1	1	B.1.258.16	0.001637
S	67	A67del	GCT	---	1	1	B.1.258.24	0.010753
S	67	A67S	Gct	Tct	1	1	B.1.276	0.016949
S	67	A67V	gCt	gTt	1	1	B.1.279	0.000514
S	67	A67V	gCt	gTt	1	1	B.1.298	0.002114
S	67	A67V	gCt	gTt	1	1	B.1.305	0.002151
S	67	A67S	Gct	Tct	1	1	B.1.308	0.034483
S	67	A67T	Gct	Act	1	1	B.1.311	0.000275
S	67	A67V	gCt	gTt	1	1	B.1.320	0.001245
S	67	A67S	Gct	Tct	1	1	B.1.321	0.034483
S	67	A67V	gCt	gTt	1	1	B.1.325	0.006897
S	67	A67G	gCt	gGt	1	1	B.1.351	0.00003
S	67	A67V	gCt	gTt	1	1	B.1.351.5	0.0006
S	67	A67S	Gct	Tct	1	1	B.1.351.5	0.0006
S	67	A67V	gCt	gTt	1	1	B.1.356	0.001727
S	67	A67A	gcT	gcC	1	1	B.1.356	0.001727
S	67	A67V	gCt	gTt	1	1	B.1.36.1	0.00114
S	67	A67V	gCt	gTt	1	1	B.1.36.18	0.00042
S	67	A67S	Gct	Tct	1	1	B.1.36.19	0.009259
S	67	A67S	Gct	Tct	1	1	B.1.36.29	0.000517
S	67	A67V	gCt	gTt	1	1	B.1.36.31	0.001751
S	67	A67V	gCt	gTt	1	1	B.1.36.35	0.002604
S	67	A67V	gCt	gTt	1	1	B.1.36.36	0.000602
S	67	A67V	gCt	gTt	1	1	B.1.36.38	0.001642
S	67	A67V	gCt	gTt	1	1	B.1.36.8	0.001
S	67	A67S	Gct	Tct	1	1	B.1.362	0.001541
S	67	A67T	Gct	Act	1	1	B.1.369	0.000285
S	67	A67A	gcT	gcC	1	1	B.1.375	0.00082
S	67	A67S	Gct	Tct	1	1	B.1.375	0.00082
S	67	A67del	GCT	---	1	1	B.1.391	0.001127
S	67	A67V	gCt	gTt	1	1	B.1.396	0.000706
S	67	A67S	Gct	Tct	1	1	B.1.400	0.000429
S	67	A67V	gCt	gTt	1	1	B.1.409	0.000781
S	67	A67S	Gct	Tct	1	1	B.1.409	0.000781
S	67	A67A	gcT	gcG	1	1	B.1.424	0.008065
S	67	A67S	Gct	Tct	1	1	B.1.426	0.001009
S	67	A67del	GCT	---	1	1	B.1.427	0.00005
S	67	A67D	gCt	gAt	1	1	B.1.427	0.00005
S	67	A67V	gCt	gTt	1	1	B.1.428	0.00102
S	67	A67N	GCt	AAt	1	1	B.1.429	0.000024
S	67	A67A	gcT	gcC	1	1	B.1.429	0.000024
S	67	A67P	Gct	Cct	1	1	B.1.438	0.006536
S	67	A67S	Gct	Tct	1	1	B.1.438.1	0.000107
S	67	A67V	gCt	gTt	1	1	B.1.459	0.004082
S	67	A67V	gCt	gTt	1	1	B.1.466.2	0.000391
S	67	A67V	gCt	gTt	1	1	B.1.469	0.00361
S	67	A67V	gCt	gTt	1	1	B.1.470	0.001404
S	67	A67D	gCt	gAt	1	1	B.1.497	0.000315
S	67	A67V	gCt	gTt	1	1	B.1.499	0.00105
S	67	A67G	gCt	gGt	1	1	B.1.521	0.004975
S	67	A67G	gCt	gGt	1	1	B.1.525	0.000113
S	67	A67D	gCt	gAt	1	1	B.1.525	0.000113
S	67	A67K	GCT	AAA	1	1	B.1.525	0.000113
S	67	A67del1	Gct	-ct	1	1	B.1.526	0.000024
S	67	A67V	gCt	gTt	1	1	B.1.541	0.004425
S	67	A67V	gCt	gTt	1	1	B.1.543	0.01
S	67	A67V	gCt	gTt	1	1	B.1.564	0.000426
S	67	A67V	gCt	gTt	1	1	B.1.564.1	0.001577
S	67	A67S	Gct	Tct	1	1	B.1.565	0.00081
S	67	A67V	gCt	gTt	1	1	B.1.575.1	0.002439
S	67	A67del	GCT	---	1	1	B.1.575.2	0.004808
S	67	A67S	Gct	Tct	1	1	B.1.595	0.000261
S	67	A67del	GCT	---	1	1	B.1.596	0.000087
S	67	A67V	gCt	gTt	1	1	B.1.598	0.016949
S	67	A67S	Gct	Tct	1	1	B.1.609	0.000479
S	67	A67S	Gct	Tct	1	1	B.1.617.1	0.000129
S	67	A67T	Gct	Act	1	1	B.1.617.1	0.000129
S	67	A67G	gCt	gGt	1	1	B.1.617.2	0.000004
S	67	A67F	GCt	TTt	1	1	B.1.617.2	0.000004
S	67	A67P	Gct	Cct	1	1	B.1.617.2	0.000004
S	67	A67Y	GCt	TAt	1	1	B.1.617.2	0.000004
S	67	A67del1	gcT	gc-	1	1	B.1.617.2	0.000004
S	67	A67V	gCt	gTt	1	1	B.1.617.3	0.002985
S	67	A67S	Gct	Tct	1	1	B.1.618	0.004032
S	67	A67S	Gct	Tct	1	1	B.1.619.1	0.000641
S	67	A67del	GCT	---	1	1	B.1.620	0.000946
S	67	A67del	GCT	---	1	1	B.1.621	0.000089
S	67	A67V	gCt	gTt	1	1	B.1.621.1	0.000506
S	67	A67V	gCt	gTt	1	1	B.1.628	0.000352
S	67	A67G	gCt	gGt	1	1	B.1.637	0.000073
S	67	A67del1	gcT	gc-	1	1	B.1.637	0.000073
S	67	A67del	GCT	---	1	1	B.1.637	0.000073
S	67	A67S	Gct	Tct	1	1	B.1.9.5	0.005682
S	67	A67V	gCt	gTt	1	1	B.1.93	0.000934
S	67	A67V	gCt	gTt	1	1	B.3	0.000831
S	67	A67T	Gct	Act	1	1	B.6	0.00091
S	67	A67V	gCt	gTt	1	1	B.61	0.005747
S	67	A67V	gCt	gTt	1	1	C.16	0.00106
S	67	A67S	Gct	Tct	1	1	C.31	0.017857
S	67	A67del	GCT	---	1	1	C.35	0.000774
S	67	A67V	gCt	gTt	1	1	C.35	0.000774
S	67	A67V	gCt	gTt	1	1	C.36	0.000911
S	67	A67A	gcT	gcC	1	1	C.36.3	0.000567
S	67	A67del	GCT	---	1	1	C.36.3	0.000567
S	67	A67D	gCt	gAt	1	1	C.37	0.000116
S	67	A67A	gcT	gcC	1	1	N.5	0.001767
S	67	A67G	gCt	gGt	1	1	P.1	0.000016
S	67	A67del	GCT	---	1	1	P.1.1	0.000318
S	67	A67del	GCT	---	1	1	P.1.10.1	0.00813
S	67	A67V	gCt	gTt	1	1	P.1.12	0.000484
S	67	A67T	Gct	Act	1	1	P.1.14	0.000048
S	67	A67V	gCt	gTt	1	1	P.1.14	0.000048
S	67	A67V	gCt	gTt	1	1	P.1.15	0.000232
S	67	A67S	Gct	Tct	1	1	P.1.16	0.000374
S	67	A67V	gCt	gTt	1	1	P.1.17	0.000162
S	67	A67V	gCt	gTt	1	1	P.1.17.1	0.000875
S	67	A67A	gcT	gcA	1	1	P.2	0.000187
S	67	A67L	GCT	TTA	1	1	P.2	0.000187
S	67	A67F	GCt	TTt	1	1	P.2	0.000187
S	67	A67del	GCT	---	1	1	Q.1	0.000126
S	67	A67V	gCt	gTt	1	1	Q.4	0.000455
S	67	A67A	gcT	gcC	1	1	Q.8	0.000165
S	67	A67S	Gct	Tct	1	1	R.1	0.00009
S	67	A67del	GCT	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.