CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 663

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S663D663DsyngaCgaT15061506123549-23551
S663D663deldelGAC---5454123549-23551
S663D663PnonsynGAcCCc1070.723549-23551
S663D663AnonsyngAcgCc1050.523549-23551
S663D663AnonsyngACgCT1030.323549-23551
S663D663AnonsyngACgCG1020.223549-23551
S663D663PnonsynGACCCG1020.223549-23551
S663D663PnonsynGACCCA1010.123549-23551
S663D663YnonsynGacTac99123549-23551
S663D663HnonsynGacCac77123549-23551
S663D663TnonsynGAcACc750.71428623549-23551
S663D663EnonsyngaCgaG740.57142923549-23551
S663D663EnonsyngaCgaA730.42857123549-23551
S663D663TnonsynGACACA710.14285723549-23551
S663D663TnonsynGACACG710.14285723549-23551
S663D663GnonsyngAcgGc650.83333323549-23551
S663D663GnonsyngACgGA610.16666723549-23551
S663D663NnonsynGacAac55123549-23551
S663D663RnonsynGACCGA420.523549-23551
S663D663RnonsynGAcCGc410.2523549-23551
S663D663RnonsynGACAGA410.2523549-23551
S663D663del2delgACg--33123549-23551
S663D663XnonsynGACTGA320.66666723549-23551
S663D663LnonsynGAcCTc320.66666723549-23551
S663D663XnonsynGaCTaA310.33333323549-23551
S663D663LnonsynGACCTG310.33333323549-23551
S663D663del1delGac-ac22123549-23551
S663D663QnonsynGaCCaG22123549-23551
S663D663InonsynGAcATc11123549-23551
S663D663SnonsynGAcAGc11123549-23551
S663D663CnonsynGAcTGc11123549-23551

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S663D663DgaCgaT15061506All0.000288
S663D663DgaCgaT379379B.1.4480.994751
S663D663DgaCgaT270270AY.440.001643
S663D663DgaCgaT6767B.1.20.00059
S663D663DgaCgaT6262B.10.000568
S663D663DgaCgaT5959B.1.4080.217712
S663D663DgaCgaT5555B.1.177.870.040029
S663D663delGAC---5454All0.00001
S663D663DgaCgaT5454B.1.1770.000711
S663D663DgaCgaT5151B.1.6370.003727
S663D663DgaCgaT4747B.1.617.20.000177
S663D663DgaCgaT4040C.36.30.022689
S663D663DgaCgaT3737B.1.2210.002628
S663D663DgaCgaT3333AY.1030.000205
S663D663DgaCgaT3030B.1.1.70.000027
S663D663DgaCgaT2424B.1.4290.000565
S663D663DgaCgaT2323AY.40.000036
S663D663DgaCgaT2020P.10.000315
S663D663DgaCgaT1717AY.250.000102
S663D663DgaCgaT1616B.1.3510.000476
S663D663DgaCgaT1212P.1.160.004489
S663D663DgaCgaT1111AY.1190.000388
S663D663DgaCgaT1111B.1.10.0002
S663D663PGAcCCc710All0.000001
S663D663AgAcgCc510All0.000001
S663D663AgACgCT310All0.000001
S663D663PGACCCG210All0
S663D663AgACgCG210All0
S663D663PGACCCA110All0
S663D663DgaCgaT1010B.1.360.001459
S663D663YGacTac99All0.000002
S663D663DgaCgaT99AY.200.00035
S663D663DgaCgaT99B.1.1600.000281
S663D663DgaCgaT99B.1.160.140.019068
S663D663delGAC---88B.10.000073
S663D663DgaCgaT88B.1.2580.000532
S663D663DgaCgaT88B.1.5760.007253
S663D663HGacCac77All0.000001
S663D663TGAcACc57All0.000001
S663D663EgaCgaG47All0.000001
S663D663EgaCgaA37All0.000001
S663D663TGACACG17All0
S663D663TGACACA17All0
S663D663delGAC---77B.1.1.70.000006
S663D663GgAcgGc56All0.000001
S663D663GgACgGA16All0
S663D663DgaCgaT66B.1.1.2410.012422
S663D663NGacAac55All0.000001
S663D663DgaCgaT55B.1.1.4320.006329
S663D663NGacAac440.222222
S663D663PGAcCCc440.222222
S663D663AgACgCT240.111111
S663D663AgAcgCc240.111111
S663D663RGACCGA24All0
S663D663RGACAGA14All0
S663D663RGAcCGc14All0
S663D663delGAC---44AY.430.000018
S663D663DgaCgaT44AY.430.000018
S663D663DgaCgaT44B.1.1.3620.022472
S663D663delGAC---44P.10.000063
S663D663DgaCgaT44P.1.150.000929
S663D663DgaCgaT44P.20.000747
S663D663del2gACg--33All0.000001
S663D663LGAcCTc23All0
S663D663XGACTGA23All0
S663D663XGaCTaA13All0
S663D663LGACCTG13All0
S663D663delGAC---33AY.250.000018
S663D663RGACCGA13AY.30.00001
S663D663RGACAGA13AY.30.00001
S663D663RGAcCGc13AY.30.00001
S663D663DgaCgaT33AY.9.20.00011
S663D663YGacTac33B.1.10.000054
S663D663DgaCgaT33B.1.1.3260.005282
S663D663DgaCgaT33B.1.177.70.000495
S663D663DgaCgaT33B.1.5960.000261
S663D663delGAC---33B.1.6210.000266
S663D663DgaCgaT33C.370.000348
S663D663delGAC---33P.1.150.000697
S663D663HGacCac220.111111
S663D663TGAcACc220.111111
S663D663del1Gac-ac22All0
S663D663QGaCCaG22All0
S663D663DgaCgaT22AY.1000.000092
S663D663DgaCgaT22AY.1020.000053
S663D663DgaCgaT22AY.1180.000125
S663D663DgaCgaT22AY.1200.000074
S663D663DgaCgaT22AY.1210.000271
S663D663TGACACA12AY.30.00001
S663D663TGAcACc12AY.30.00001
S663D663PGAcCCc12AY.30.00001
S663D663PGACCCA12AY.30.00001
S663D663DgaCgaT22AY.390.000049
S663D663LGACCTG12AY.430.000004
S663D663PGACCCG12AY.430.000004
S663D663LGAcCTc12AY.430.000004
S663D663PGAcCCc12AY.430.000004
S663D663AgAcgCc12AY.430.000004
S663D663AgACgCG12AY.430.000004
S663D663EgaCgaG22AY.440.000012
S663D663DgaCgaT22AY.470.000062
S663D663GgAcgGc22B0.000256
S663D663DgaCgaT22B0.000256
S663D663GgACgGA12B.1.10.000018
S663D663XGACTGA12B.1.10.000018
S663D663XGaCTaA12B.1.10.000018
S663D663GgAcgGc12B.1.10.000018
S663D663DgaCgaT22B.1.1.2970.004474
S663D663DgaCgaT22B.1.1.3060.000877
S663D663DgaCgaT22B.1.1.3110.000716
S663D663DgaCgaT22B.1.1.390.001019
S663D663DgaCgaT22B.1.1100.00905
S663D663DgaCgaT22B.1.177.120.000303
S663D663DgaCgaT22B.1.177.460.001837
S663D663DgaCgaT22B.1.177.730.001133
S663D663DgaCgaT22B.1.177.860.000367
S663D663delGAC---22B.1.20.000018
S663D663DgaCgaT22B.1.2320.001075
S663D663DgaCgaT22B.1.2650.002541
S663D663DgaCgaT22B.1.3110.000549
S663D663DgaCgaT22B.1.3690.00057
S663D663DgaCgaT22B.1.4270.000101
S663D663DgaCgaT22B.1.4780.023529
S663D663delGAC---22B.1.5960.000174
S663D663DgaCgaT22B.1.6090.000959
S663D663delGAC---22B.1.617.20.000008
S663D663AgAcgCc12B.1.617.20.000004
S663D663AgACgCG12B.1.617.20.000004
S663D663PGACCCG12B.1.617.20.000004
S663D663PGAcCCc12B.1.617.20.000004
S663D663delGAC---11A.2.20.001689
S663D663DgaCgaT11AD.20.000219
S663D663IGAcATc11All0
S663D663SGAcAGc11All0
S663D663CGAcTGc11All0
S663D663delGAC---11AY.1030.000006
S663D663RGACCGA11AY.1130.000142
S663D663DgaCgaT11AY.1130.000142
S663D663HGacCac11AY.230.00007
S663D663DgaCgaT11AY.230.00007
S663D663TGAcACc11AY.240.000431
S663D663DgaCgaT11AY.290.000016
S663D663SGAcAGc11AY.30.00001
S663D663LGAcCTc11AY.30.00001
S663D663del1Gac-ac11AY.380.000499
S663D663TGACACG11AY.39.10.00004
S663D663EgaCgaG11AY.430.000004
S663D663HGacCac11AY.430.000004
S663D663QGaCCaG11AY.430.000004
S663D663delGAC---11AY.440.000006
S663D663YGacTac11AY.450.000122
S663D663delGAC---11AY.460.000104
S663D663DgaCgaT11AY.550.000917
S663D663DgaCgaT11AY.640.000595
S663D663IGAcATc11AY.670.000464
S663D663delGAC---11AY.840.000437
S663D663DgaCgaT11AY.850.000427
S663D663delGAC---11AY.850.000427
S663D663DgaCgaT11AY.870.000833
S663D663GgAcgGc11AY.9.20.000037
S663D663delGAC---11AY.990.001049
S663D663AgAcgCc11B.10.000009
S663D663YGacTac11B.10.000009
S663D663GgAcgGc11B.10.000009
S663D663del2gACg--11B.10.000009
S663D663delGAC---11B.1.10.000018
S663D663CGAcTGc11B.1.10.000018
S663D663AgACgCT11B.1.10.000018
S663D663EgaCgaA11B.1.10.000018
S663D663del2gACg--11B.1.1.1970.037037
S663D663DgaCgaT11B.1.1.2140.000055
S663D663DgaCgaT11B.1.1.2160.00089
S663D663DgaCgaT11B.1.1.2220.000204
S663D663DgaCgaT11B.1.1.250.000569
S663D663DgaCgaT11B.1.1.2630.001558
S663D663DgaCgaT11B.1.1.280.000311
S663D663DgaCgaT11B.1.1.3170.000412
S663D663HGacCac11B.1.1.370.000193
S663D663DgaCgaT11B.1.1.370.000193
S663D663delGAC---11B.1.1.3720.000689
S663D663DgaCgaT11B.1.1.4250.045455
S663D663HGacCac11B.1.1.70.000001
S663D663TGAcACc11B.1.1.70.000001
S663D663DgaCgaT11B.1.1.710.006061
S663D663DgaCgaT11B.1.1400.018868
S663D663DgaCgaT11B.1.160.310.008065
S663D663delGAC---11B.1.1770.000013
S663D663DgaCgaT11B.1.177.170.000821
S663D663DgaCgaT11B.1.177.210.000076
S663D663DgaCgaT11B.1.177.350.000691
S663D663DgaCgaT11B.1.177.440.000519
S663D663DgaCgaT11B.1.177.540.000606
S663D663DgaCgaT11B.1.177.600.000218
S663D663DgaCgaT11B.1.177.810.000189
S663D663DgaCgaT11B.1.177.820.000477
S663D663YGacTac11B.1.20.000009
S663D663delGAC---11B.1.2340.000132
S663D663DgaCgaT11B.1.258.140.00098
S663D663DgaCgaT11B.1.258.20.004505
S663D663YGacTac11B.1.3110.000275
S663D663DgaCgaT11B.1.3130.006579
S663D663DgaCgaT11B.1.3250.006897
S663D663EgaCgaA11B.1.36.80.001
S663D663DgaCgaT11B.1.3670.000792
S663D663DgaCgaT11B.1.3710.001122
S663D663del2gACg--11B.1.4290.000024
S663D663DgaCgaT11B.1.438.10.000107
S663D663DgaCgaT11B.1.4970.000315
S663D663DgaCgaT11B.1.5950.000261
S663D663DgaCgaT11B.1.6020.006536
S663D663DgaCgaT11B.1.617.10.000129
S663D663YGacTac11B.1.617.20.000004
S663D663EgaCgaG11B.1.617.20.000004
S663D663HGacCac11B.1.617.20.000004
S663D663XGACTGA11B.1.617.20.000004
S663D663QGaCCaG11B.1.617.20.000004
S663D663del1Gac-ac11B.1.617.20.000004
S663D663delGAC---11B.1.6200.000946
S663D663delGAC---11B.1.6270.00202
S663D663delGAC---11B.1.6380.052632
S663D663YGacTac11B.30.000831
S663D663DgaCgaT11B.60.00091
S663D663delGAC---11C.370.000116
S663D663DgaCgaT11D.20.000075
S663D663EgaCgaA11D.20.000075
S663D663NGacAac11P.10.000016
S663D663DgaCgaT11P.1.120.000484
S663D663delGAC---11P.1.130.000898
S663D663DgaCgaT11P.1.140.000048
S663D663DgaCgaT11P.1.20.001156
S663D663DgaCgaT11Q.80.000165