CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 662

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S662C662CsyntgTtgC354354123546-23548
S662C662deldelTGT---5656123546-23548
S662C662FnonsyntGttTt24230.95833323546-23548
S662C662FnonsyntGTtTC2410.041666723546-23548
S662C662SnonsyntGttCt17130.76470623546-23548
S662C662SnonsynTgtAgt1740.23529423546-23548
S662C662RnonsynTgtCgt1040.423546-23548
S662C662RnonsynTgTCgA1030.323546-23548
S662C662RnonsynTgTAgA1020.223546-23548
S662C662RnonsynTgTCgG1010.123546-23548
S662C662YnonsyntGttAt970.77777823546-23548
S662C662YnonsyntGTtAC920.22222223546-23548
S662C662HnonsynTGtCAt640.66666723546-23548
S662C662HnonsynTGTCAC620.33333323546-23548
S662C662GnonsynTgtGgt420.523546-23548
S662C662PnonsynTGtCCt420.523546-23548
S662C662DnonsynTGtGAt420.523546-23548
S662C662DnonsynTGTGAC420.523546-23548
S662C662GnonsynTgTGgA410.2523546-23548
S662C662PnonsynTGTCCC410.2523546-23548
S662C662GnonsynTgTGgG410.2523546-23548
S662C662PnonsynTGTCCA410.2523546-23548
S662C662del1delTgt-gt320.66666723546-23548
S662C662del1deltgTtg-310.33333323546-23548
S662C662QnonsynTGTCAA22123546-23548
S662C662KnonsynTGTAAA22123546-23548
S662C662EnonsynTGTGAA22123546-23548
S662C662XnonsyntGTtAA22123546-23548
S662C662WnonsyntgTtgG22123546-23548
S662C662VnonsynTGTGTC210.523546-23548
S662C662VnonsynTGtGTt210.523546-23548

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S662C662CtgTtgC354354All0.000068
S662C662CtgTtgC169169D.31
S662C662delTGT---5656All0.000011
S662C662CtgTtgC4646AY.1030.000286
S662C662CtgTtgC3030AY.40.000047
S662C662CtgTtgC2626B.1.1.70.000023
S662C662FtGttTt2324All0.000004
S662C662FtGTtTC124All0
S662C662StGttCt1317All0.000002
S662C662STgtAgt417All0.000001
S662C662CtgTtgC1717AY.440.000103
S662C662RTgtCgt410All0.000001
S662C662RTgTCgA310All0.000001
S662C662RTgTAgA210All0
S662C662RTgTCgG110All0
S662C662YtGttAt79All0.000001
S662C662YtGTtAC29All0
S662C662delTGT---88B.10.000073
S662C662CtgTtgC88B.1.617.20.00003
S662C662delTGT---77B.1.1.70.000006
S662C662HTGtCAt46All0.000001
S662C662HTGTCAC26All0
S662C662CtgTtgC66AY.980.000474
S662C662CtgTtgC66B.1.20.000053
S662C662HTGtCAt240.111111
S662C662DTGtGAt240.111111
S662C662YtGTtAC240.111111
S662C662YtGttAt240.111111
S662C662HTGTCAC240.111111
S662C662DTGTGAC240.111111
S662C662GTgtGgt24All0
S662C662PTGtCCt24All0
S662C662DTGtGAt24All0
S662C662DTGTGAC24All0
S662C662GTgTGgG14All0
S662C662GTgTGgA14All0
S662C662PTGTCCC14All0
S662C662PTGTCCA14All0
S662C662delTGT---44AY.430.000018
S662C662CtgTtgC44B.1.4290.000094
S662C662FtGttTt44D.20.0003
S662C662delTGT---44P.10.000063
S662C662del1Tgt-gt23All0
S662C662del1tgTtg-13All0
S662C662delTGT---33AY.250.000018
S662C662CtgTtgC33B.10.000027
S662C662FtGttTt33B.1.1.70.000003
S662C662CtgTtgC33B.1.214.20.001799
S662C662delTGT---33B.1.617.20.000011
S662C662StGttCt33B.1.617.20.000011
S662C662delTGT---33B.1.6210.000266
S662C662delTGT---33P.1.150.000697
S662C662KTGTAAA220.111111
S662C662QTGTCAA220.111111
S662C662RTgTAgA220.111111
S662C662CtgTtgC220.111111
S662C662XtGTtAA220.111111
S662C662ETGTGAA220.111111
S662C662ETGTGAA22All0
S662C662WtgTtgG22All0
S662C662KTGTAAA22All0
S662C662XtGTtAA22All0
S662C662QTGTCAA22All0
S662C662VTGTGTC12All0
S662C662VTGtGTt12All0
S662C662CtgTtgC22AY.200.000078
S662C662GTgTGgA12AY.30.00001
S662C662RTgTCgG12AY.30.00001
S662C662RTgTCgA12AY.30.00001
S662C662GTgTGgG12AY.30.00001
S662C662CtgTtgC22AY.39.10.000079
S662C662CtgTtgC22AY.410.000588
S662C662StGttCt12B.10.000009
S662C662STgtAgt12B.10.000009
S662C662FtGttTt22B.1.10.000036
S662C662FtGttTt22B.1.1.5190.000079
S662C662CtgTtgC22B.1.177.890.04878
S662C662delTGT---22B.1.20.000018
S662C662FtGttTt22B.1.20.000018
S662C662delTGT---22B.1.5960.000174
S662C662CtgTtgC22C.370.000232
S662C662delTGT---11A.2.20.001689
S662C662RTgtCgt11AD.20.000219
S662C662StGttCt11AE.80.000489
S662C662delTGT---11AY.1030.000006
S662C662CtgTtgC11AY.1070.000466
S662C662RTgTCgA11AY.1130.000142
S662C662PTGTCCA11AY.1130.000142
S662C662CtgTtgC11AY.1190.000035
S662C662STgtAgt11AY.1190.000035
S662C662CtgTtgC11AY.140.000088
S662C662CtgTtgC11AY.150.002222
S662C662WtgTtgG11AY.230.00007
S662C662VTGTGTC11AY.240.000431
S662C662HTGtCAt11AY.30.00001
S662C662CtgTtgC11AY.30.00001
S662C662CtgTtgC11AY.390.000025
S662C662PTGTCCC11AY.39.10.00004
S662C662StGttCt11AY.40.000002
S662C662StGttCt11AY.430.000004
S662C662CtgTtgC11AY.430.000004
S662C662HTGtCAt11AY.430.000004
S662C662StGttCt11AY.440.000006
S662C662YtGttAt11AY.440.000006
S662C662delTGT---11AY.440.000006
S662C662StGttCt11AY.450.000122
S662C662CtgTtgC11AY.450.000122
S662C662delTGT---11AY.460.000104
S662C662delTGT---11AY.46.60.000072
S662C662CtgTtgC11AY.50.000021
S662C662RTgtCgt11AY.5.40.000277
S662C662StGttCt11AY.660.00107
S662C662StGttCt11AY.670.000464
S662C662delTGT---11AY.840.000437
S662C662delTGT---11AY.850.000427
S662C662CtgTtgC11AY.9.10.000084
S662C662StGttCt11AY.9.20.000037
S662C662CtgTtgC11AY.910.00073
S662C662delTGT---11AY.990.001049
S662C662CtgTtgC11B0.000128
S662C662del1tgTtg-11B0.000128
S662C662YtGttAt11B.10.000009
S662C662FtGttTt11B.10.000009
S662C662del1Tgt-gt11B.10.000009
S662C662RTgtCgt11B.10.000009
S662C662GTgtGgt11B.1.10.000018
S662C662delTGT---11B.1.10.000018
S662C662VTGtGTt11B.1.10.000018
S662C662del1Tgt-gt11B.1.10.000018
S662C662STgtAgt11B.1.1.1610.003534
S662C662CtgTtgC11B.1.1.2140.000055
S662C662CtgTtgC11B.1.1.250.000569
S662C662CtgTtgC11B.1.1.280.000311
S662C662delTGT---11B.1.1.3720.000689
S662C662StGttCt11B.1.1.500.000679
S662C662GTgtGgt11B.1.1.70.000001
S662C662CtgTtgC11B.1.1600.000031
S662C662FtGttTt11B.1.1770.000013
S662C662delTGT---11B.1.1770.000013
S662C662PTGtCCt11B.1.2210.000071
S662C662FtGttTt11B.1.2320.000537
S662C662delTGT---11B.1.2340.000132
S662C662YtGttAt11B.1.2430.00007
S662C662FtGttTt11B.1.2430.00007
S662C662FtGttTt11B.1.258.170.000104
S662C662RTgtCgt11B.1.3200.001245
S662C662FtGttTt11B.1.3380.008621
S662C662CtgTtgC11B.1.3510.00003
S662C662CtgTtgC11B.1.351.20.000303
S662C662CtgTtgC11B.1.4270.00005
S662C662CtgTtgC11B.1.5090.000866
S662C662CtgTtgC11B.1.5260.000024
S662C662YtGttAt11B.1.5460.003704
S662C662FtGttTt11B.1.5900.004545
S662C662FtGttTt11B.1.5960.000087
S662C662CtgTtgC11B.1.617.10.000129
S662C662RTgTCgA11B.1.617.20.000004
S662C662PTGtCCt11B.1.617.20.000004
S662C662YtGttAt11B.1.617.20.000004
S662C662WtgTtgG11B.1.617.20.000004
S662C662delTGT---11B.1.6200.000946
S662C662CtgTtgC11B.1.6210.000089
S662C662delTGT---11B.1.6270.00202
S662C662delTGT---11B.1.6380.052632
S662C662STgtAgt11B.270.015385
S662C662delTGT---11C.370.000116
S662C662FtGTtTC11D.30.005917
S662C662FtGttTt11P.10.000016
S662C662FtGttTt11P.1.10.000318
S662C662delTGT---11P.1.130.000898
S662C662CtgTtgC11P.20.000187