CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 661

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S661E661DnonsyngaGgaT515851520.99883723543-23545
S661E661DnonsyngaGgaC515860.0011632423543-23545
S661E661EsyngaGgaA185185123543-23545
S661E661deldelGAG---5656123543-23545
S661E661VnonsyngAggTg30290.96666723543-23545
S661E661VnonsyngAGgTC3010.033333323543-23545
S661E661AnonsyngAggCg24230.95833323543-23545
S661E661AnonsyngAGgCT2410.041666723543-23545
S661E661GnonsyngAggGg2323123543-23545
S661E661KnonsynGagAag1818123543-23545
S661E661QnonsynGagCag1818123543-23545
S661E661XnonsynGagTag1212123543-23545
S661E661TnonsynGAGACA66123543-23545
S661E661RnonsynGAGCGC530.623543-23545
S661E661RnonsynGAGAGA510.223543-23545
S661E661RnonsynGAgAGg510.223543-23545
S661E661HnonsynGaGCaC430.7523543-23545
S661E661del1delgaGga-420.523543-23545
S661E661del1delGag-ag420.523543-23545
S661E661HnonsynGaGCaT410.2523543-23545
S661E661SnonsynGAGAGC22123543-23545
S661E661NnonsynGaGAaC22123543-23545
S661E661YnonsynGaGTaC11123543-23545
S661E661PnonsynGAGCCA11123543-23545
S661E661LnonsynGAGCTC11123543-23545
S661E661CnonsynGAGTGC11123543-23545

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S661E661DgaGgaT51525158All0.000985
S661E661DgaGgaC65158All0.000001
S661E661DgaGgaT41344134AY.46.40.680046
S661E661DgaGgaT472472P.10.007436
S661E661EgaGgaA185185All0.000035
S661E661EgaGgaA100100P.1.10.031766
S661E661delGAG---5656All0.000011
S661E661DgaGgaT4144B.1.1.70.000037
S661E661DgaGgaC344B.1.1.70.000003
S661E661DgaGgaT4343B.1.617.20.000162
S661E661DgaGgaT3232AY.460.003331
S661E661DgaGgaT3131AY.440.000189
S661E661VgAggTg2930All0.000006
S661E661VgAGgTC130All0
S661E661DgaGgaT2828B.1.177.810.005301
S661E661EgaGgaA2727B.1.5950.007046
S661E661DgaGgaT2626AY.1170.002197
S661E661DgaGgaT2626AY.40.00004
S661E661DgaGgaT2525B.1.258.170.002599
S661E661AgAggCg2324All0.000004
S661E661AgAGgCT124All0
S661E661DgaGgaT2424AY.750.001345
S661E661GgAggGg2323All0.000004
S661E661DgaGgaT2222AY.1200.000818
S661E661DgaGgaT1919B.1.6370.001388
S661E661QGagCag1818All0.000003
S661E661KGagAag1818All0.000003
S661E661DgaGgaT1717AY.1030.000106
S661E661EgaGgaA1616B.1.5260.000376
S661E661DgaGgaT1515AY.430.000066
S661E661DgaGgaT1414B.1.177.540.00849
S661E661XGagTag1212All0.000002
S661E661DgaGgaT1111AY.390.000272
S661E661DgaGgaT1111P.1.140.000526
S661E661DgaGgaT1010B.10.000092
S661E661DgaGgaT1010B.1.10.000181
S661E661delGAG---88B.10.000073
S661E661delGAG---88B.1.1.70.000007
S661E661DgaGgaT88B.1.4290.000188
S661E661DgaGgaT77AY.250.000042
S661E661EgaGgaA77AY.40.000011
S661E661DgaGgaT77AY.450.000852
S661E661VgAggTg77P.10.00011
S661E661TGAGACA66All0.000001
S661E661DgaGgaT66AY.1180.000376
S661E661VgAggTg66AY.40.000009
S661E661RGAGCGC35All0.000001
S661E661RGAgAGg15All0
S661E661RGAGAGA15All0
S661E661XGagTag55B.10.000046
S661E661EgaGgaA55B.1.10.000091
S661E661DgaGgaT55B.1.1.3680.015432
S661E661VgAggTg45B.1.1.70.000004
S661E661VgAGgTC15B.1.1.70.000001
S661E661HGaGCaC34All0.000001
S661E661del1Gag-ag24All0
S661E661del1gaGga-24All0
S661E661HGaGCaT14All0
S661E661DgaGgaT44AY.200.000155
S661E661KGagAag44AY.40.000006
S661E661DgaGgaT44AY.4.20.000087
S661E661DgaGgaT44B.1.1.3170.001647
S661E661DgaGgaT44B.1.1.5190.000159
S661E661GgAggGg44B.1.1.70.000004
S661E661DgaGgaT44B.1.1770.000053
S661E661AgAggCg44B.1.3510.000119
S661E661DgaGgaT44B.1.466.20.001565
S661E661delGAG---44P.10.000063
S661E661DgaGgaT44P.1.120.001936
S661E661KGagAag44Q.20.002454
S661E661DgaGgaT33AY.230.000209
S661E661delGAG---33AY.250.000018
S661E661DgaGgaT33AY.260.000085
S661E661QGagCag33AY.290.000047
S661E661DgaGgaT33AY.360.000445
S661E661delGAG---33AY.430.000013
S661E661del1Gag-ag23B.10.000018
S661E661del1gaGga-13B.10.000009
S661E661AgAggCg33B.1.4290.000071
S661E661EgaGgaA33B.1.617.20.000011
S661E661VgAggTg33B.1.617.20.000011
S661E661delGAG---33B.1.617.20.000011
S661E661AgAggCg33B.1.617.20.000011
S661E661EgaGgaA33B.1.6210.000266
S661E661delGAG---33B.1.6210.000266
S661E661delGAG---33P.1.150.000697
S661E661GgAggGg220.111111
S661E661XGagTag220.111111
S661E661KGagAag220.111111
S661E661RGAGCGC220.111111
S661E661HGaGCaC220.111111
S661E661SGAGAGC220.111111
S661E661NGaGAaC220.111111
S661E661EgaGgaA22A.23.10.001408
S661E661NGaGAaC22All0
S661E661SGAGAGC22All0
S661E661DgaGgaT22AY.1130.000285
S661E661DgaGgaT22AY.1190.000071
S661E661QGagCag22AY.200.000078
S661E661DgaGgaT22AY.290.000032
S661E661EgaGgaA22AY.30.00002
S661E661GgAggGg22AY.30.00002
S661E661TGAGACA22AY.430.000009
S661E661AgAggCg22AY.440.000012
S661E661DgaGgaT22AY.470.000062
S661E661DgaGgaT22AY.50.000041
S661E661DgaGgaT22AY.98.10.000097
S661E661DgaGgaT22AY.99.20.000184
S661E661KGagAag22B.10.000018
S661E661GgAggGg22B.10.000018
S661E661QGagCag22B.10.000018
S661E661AgAggCg22B.1.10.000036
S661E661delGAG---22B.1.10.000036
S661E661DgaGgaT22B.1.1.3650.011173
S661E661DgaGgaT22B.1.1.390.001019
S661E661DgaGgaT22B.1.1.4660.017391
S661E661EgaGgaA22B.1.1.70.000002
S661E661AgAggCg22B.1.1.70.000002
S661E661DgaGgaT22B.1.1600.000062
S661E661GgAggGg22B.1.1770.000026
S661E661QGagCag22B.1.20.000018
S661E661DgaGgaT22B.1.20.000018
S661E661GgAggGg22B.1.20.000018
S661E661delGAG---22B.1.20.000018
S661E661DgaGgaT22B.1.2340.000264
S661E661DgaGgaT22B.1.351.30.001753
S661E661EgaGgaA22B.1.36.310.003503
S661E661DgaGgaT22B.1.4270.000101
S661E661KGagAag22B.1.5260.000047
S661E661delGAG---22B.1.5960.000174
S661E661DgaGgaT22B.1.5960.000174
S661E661DgaGgaT22B.1.617.10.000258
S661E661QGagCag22B.1.617.20.000008
S661E661DgaGgaT22C.36.30.001134
S661E661QGagCag22D.20.00015
S661E661DgaGgaT22D.20.00015
S661E661AgAggCg12D.20.000075
S661E661AgAGgCT12D.20.000075
S661E661EgaGgaA22P.10.000032
S661E661DgaGgaT22P.1.150.000465
S661E661DgaGgaT22Q.10.000253
S661E661delGAG---11A.2.20.001689
S661E661DgaGgaT11A.210.00277
S661E661XGagTag11A.270.001656
S661E661YGaGTaC11All0
S661E661CGAGTGC11All0
S661E661LGAGCTC11All0
S661E661PGAGCCA11All0
S661E661EgaGgaA11AY.1030.000006
S661E661delGAG---11AY.1030.000006
S661E661DgaGgaT11AY.1100.000113
S661E661DgaGgaT11AY.1160.000287
S661E661EgaGgaA11AY.1170.000085
S661E661KGagAag11AY.1200.000037
S661E661DgaGgaT11AY.130.000161
S661E661DgaGgaT11AY.170.008197
S661E661DgaGgaT11AY.220.002092
S661E661GgAggGg11AY.230.00007
S661E661DgaGgaT11AY.240.000431
S661E661VgAggTg11AY.250.000006
S661E661VgAggTg11AY.290.000016
S661E661DgaGgaT11AY.29.10.000221
S661E661CGAGTGC11AY.30.00001
S661E661HGaGCaC11AY.30.00001
S661E661TGAGACA11AY.30.00001
S661E661YGaGTaC11AY.30.00001
S661E661RGAGCGC11AY.30.00001
S661E661AgAggCg11AY.320.000532
S661E661VgAggTg11AY.330.000067
S661E661DgaGgaT11AY.340.000097
S661E661EgaGgaA11AY.390.000025
S661E661AgAggCg11AY.40.000002
S661E661VgAggTg11AY.4.20.000022
S661E661DgaGgaT11AY.4.2.10.000149
S661E661DgaGgaT11AY.420.00004
S661E661EgaGgaA11AY.430.000004
S661E661del1gaGga-11AY.430.000004
S661E661VgAggTg11AY.440.000006
S661E661QGagCag11AY.440.000006
S661E661TGAGACA11AY.440.000006
S661E661delGAG---11AY.440.000006
S661E661delGAG---11AY.460.000104
S661E661EgaGgaA11AY.46.40.000165
S661E661DgaGgaT11AY.46.50.000198
S661E661delGAG---11AY.46.60.000072
S661E661HGaGCaT11AY.590.00053
S661E661DgaGgaC11AY.60.000041
S661E661GgAggGg11AY.60.000041
S661E661KGagAag11AY.620.000436
S661E661DgaGgaC11AY.670.000464
S661E661VgAggTg11AY.7.20.000559
S661E661EgaGgaA11AY.730.000665
S661E661DgaGgaT11AY.770.001127
S661E661QGagCag11AY.790.001211
S661E661delGAG---11AY.840.000437
S661E661DgaGgaT11AY.850.000427
S661E661delGAG---11AY.850.000427
S661E661DgaGgaT11AY.90.000068
S661E661EgaGgaA11AY.9.10.000084
S661E661DgaGgaT11AY.9.20.000037
S661E661TGAGACA11AY.9.20.000037
S661E661EgaGgaA11AY.920.000287
S661E661DgaGgaT11AY.920.000287
S661E661DgaGgaT11AY.980.000079
S661E661GgAggGg11AY.98.10.000048
S661E661delGAG---11AY.990.001049
S661E661VgAggTg11AZ.20.000821
S661E661EgaGgaA11B.10.000009
S661E661RGAGAGA11B.10.000009
S661E661VgAggTg11B.1.10.000018
S661E661QGagCag11B.1.10.000018
S661E661DgaGgaT11B.1.1.2200.001859
S661E661KGagAag11B.1.1.2430.004082
S661E661DgaGgaT11B.1.1.3030.002762
S661E661DgaGgaC11B.1.1.370.000193
S661E661delGAG---11B.1.1.3720.000689
S661E661DgaGgaT11B.1.1.4480.002033
S661E661GgAggGg11B.1.1.500.000679
S661E661XGagTag11B.1.1.70.000001
S661E661RGAgAGg11B.1.1.70.000001
S661E661QGagCag11B.1.1.70.000001
S661E661AgAggCg11B.1.1170.0125
S661E661delGAG---11B.1.1770.000013
S661E661AgAggCg11B.1.1770.000013
S661E661DgaGgaT11B.1.177.120.000152
S661E661AgAggCg11B.1.177.860.000183
S661E661XGagTag11B.1.20.000009
S661E661VgAggTg11B.1.20.000009
S661E661XGagTag11B.1.2010.005682
S661E661DgaGgaT11B.1.2100.002132
S661E661DgaGgaT11B.1.2210.000071
S661E661EgaGgaA11B.1.2210.000071
S661E661DgaGgaT11B.1.2580.000067
S661E661XGagTag11B.1.3290.000608
S661E661DgaGgaT11B.1.3510.00003
S661E661LGAGCTC11B.1.3510.00003
S661E661DgaGgaT11B.1.360.000146
S661E661AgAggCg11B.1.36.100.004785
S661E661GgAggGg11B.1.4290.000024
S661E661EgaGgaA11B.1.4290.000024
S661E661GgAggGg11B.1.438.10.000107
S661E661QGagCag11B.1.5650.00081
S661E661DgaGgaT11B.1.5950.000261
S661E661EgaGgaA11B.1.6040.017241
S661E661GgAggGg11B.1.617.20.000004
S661E661PGAGCCA11B.1.617.20.000004
S661E661TGAGACA11B.1.617.20.000004
S661E661delGAG---11B.1.6200.000946
S661E661DgaGgaT11B.1.6210.000089
S661E661KGagAag11B.1.6210.000089
S661E661delGAG---11B.1.6270.00202
S661E661delGAG---11B.1.6380.052632
S661E661delGAG---11C.370.000116
S661E661EgaGgaA11C.370.000116
S661E661EgaGgaA11D.20.000075
S661E661GgAggGg11P.10.000016
S661E661delGAG---11P.1.130.000898
S661E661GgAggGg11P.1.140.000048