CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 66 | H66Y | nonsyn | Cat | Tat | 2176 | 2176 | 1 | 21758-21760 | |
S | 66 | H66del | del | CAT | --- | 1305 | 1305 | 1 | 21758-21760 | |
S | 66 | H66H | syn | caT | caC | 561 | 561 | 1 | 21758-21760 | |
S | 66 | H66R | nonsyn | cAt | cGt | 457 | 446 | 0.97593 | 21758-21760 | |
S | 66 | H66R | nonsyn | cAT | cGG | 457 | 5 | 0.0109409 | 21758-21760 | |
S | 66 | H66R | nonsyn | CAT | AGG | 457 | 4 | 0.00875274 | 21758-21760 | |
S | 66 | H66R | nonsyn | cAT | cGC | 457 | 1 | 0.00218818 | 21758-21760 | |
S | 66 | H66R | nonsyn | CAT | AGA | 457 | 1 | 0.00218818 | 21758-21760 | |
S | 66 | H66Q | nonsyn | caT | caA | 120 | 75 | 0.625 | 21758-21760 | |
S | 66 | H66Q | nonsyn | caT | caG | 120 | 45 | 0.375 | 21758-21760 | |
S | 66 | H66N | nonsyn | Cat | Aat | 90 | 90 | 1 | 21758-21760 | |
S | 66 | H66P | nonsyn | cAt | cCt | 90 | 84 | 0.933333 | 21758-21760 | |
S | 66 | H66P | nonsyn | cAT | cCG | 90 | 5 | 0.0555556 | 21758-21760 | |
S | 66 | H66P | nonsyn | cAT | cCC | 90 | 1 | 0.0111111 | 21758-21760 | |
S | 66 | H66D | nonsyn | Cat | Gat | 51 | 51 | 1 | 21758-21760 | |
S | 66 | H66L | nonsyn | cAt | cTt | 31 | 27 | 0.870968 | 21758-21760 | |
S | 66 | H66L | nonsyn | CAT | TTA | 31 | 2 | 0.0645161 | 21758-21760 | |
S | 66 | H66L | nonsyn | cAT | cTG | 31 | 2 | 0.0645161 | 21758-21760 | |
S | 66 | H66T | nonsyn | CAt | ACt | 10 | 6 | 0.6 | 21758-21760 | |
S | 66 | H66T | nonsyn | CAT | ACG | 10 | 4 | 0.4 | 21758-21760 | |
S | 66 | H66K | nonsyn | CaT | AaG | 5 | 5 | 1 | 21758-21760 | |
S | 66 | H66del2 | del | CAT | --N | 5 | 2 | 0.4 | 21758-21760 | |
S | 66 | H66del1 | del | Cat | -at | 5 | 2 | 0.4 | 21758-21760 | |
S | 66 | H66del1 | del | caT | ca- | 5 | 1 | 0.2 | 21758-21760 | |
S | 66 | H66del1 | del | CAT | -CA | 5 | 1 | 0.2 | 21758-21760 | |
S | 66 | H66del1 | del | CAT | -NN | 5 | 1 | 0.2 | 21758-21760 | |
S | 66 | H66del2 | del | CAt | --t | 5 | 1 | 0.2 | 21758-21760 | |
S | 66 | H66del2 | del | cAT | c-- | 5 | 1 | 0.2 | 21758-21760 | |
S | 66 | H66del2 | del | CAT | --A | 5 | 1 | 0.2 | 21758-21760 | |
S | 66 | H66S | nonsyn | CAt | AGt | 4 | 4 | 1 | 21758-21760 | |
S | 66 | H66E | nonsyn | CaT | GaA | 3 | 2 | 0.666667 | 21758-21760 | |
S | 66 | H66F | nonsyn | CAT | TTC | 3 | 2 | 0.666667 | 21758-21760 | |
S | 66 | H66E | nonsyn | CaT | GaG | 3 | 1 | 0.333333 | 21758-21760 | |
S | 66 | H66F | nonsyn | CAt | TTt | 3 | 1 | 0.333333 | 21758-21760 | |
S | 66 | H66C | nonsyn | CAT | TGC | 2 | 2 | 1 | 21758-21760 | |
S | 66 | H66X | nonsyn | CAT | TGA | 2 | 2 | 1 | 21758-21760 | |
S | 66 | H66V | nonsyn | CAt | GTt | 2 | 1 | 0.5 | 21758-21760 | |
S | 66 | H66V | nonsyn | CAT | GTG | 2 | 1 | 0.5 | 21758-21760 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 66 | H66Y | Cat | Tat | 2176 | 2176 | All | 0.000416 |
S | 66 | H66Y | Cat | Tat | 1668 | 1668 | AY.120.2.1 | 0.831091 |
S | 66 | H66del | CAT | --- | 1305 | 1305 | All | 0.00025 |
S | 66 | H66H | caT | caC | 561 | 561 | All | 0.000107 |
S | 66 | H66R | cAt | cGt | 446 | 457 | All | 0.000085 |
S | 66 | H66R | cAT | cGG | 5 | 457 | All | 0.000001 |
S | 66 | H66R | CAT | AGG | 4 | 457 | All | 0.000001 |
S | 66 | H66R | cAT | cGC | 1 | 457 | All | 0 |
S | 66 | H66R | CAT | AGA | 1 | 457 | All | 0 |
S | 66 | H66Y | Cat | Tat | 284 | 284 | AY.120.2 | 0.365039 |
S | 66 | H66del | CAT | --- | 282 | 282 | C.37 | 0.03273 |
S | 66 | H66R | cAt | cGt | 197 | 197 | B.1.1.7 | 0.000176 |
S | 66 | H66del | CAT | --- | 165 | 165 | B.1.626 | 0.942857 |
S | 66 | H66H | caT | caC | 161 | 161 | B.1.1.7 | 0.000144 |
S | 66 | H66Q | caT | caA | 75 | 120 | All | 0.000014 |
S | 66 | H66Q | caT | caG | 45 | 120 | All | 0.000009 |
S | 66 | H66del | CAT | --- | 106 | 106 | AY.43 | 0.00047 |
S | 66 | H66Y | Cat | Tat | 105 | 105 | B.1.1.7 | 0.000094 |
S | 66 | H66N | Cat | Aat | 90 | 90 | All | 0.000017 |
S | 66 | H66P | cAt | cCt | 84 | 90 | All | 0.000016 |
S | 66 | H66P | cAT | cCG | 5 | 90 | All | 0.000001 |
S | 66 | H66P | cAT | cCC | 1 | 90 | All | 0 |
S | 66 | H66del | CAT | --- | 80 | 80 | B.1.1.7 | 0.000072 |
S | 66 | H66H | caT | caC | 79 | 79 | B.1.534 | 0.9875 |
S | 66 | H66del | CAT | --- | 78 | 78 | B.1.617.2 | 0.000294 |
S | 66 | H66H | caT | caC | 68 | 68 | B.1.131 | 0.596491 |
S | 66 | H66del | CAT | --- | 63 | 63 | AY.4 | 0.000098 |
S | 66 | H66P | cAt | cCt | 56 | 56 | AY.39 | 0.001384 |
S | 66 | H66D | Cat | Gat | 51 | 51 | All | 0.00001 |
S | 66 | H66del | CAT | --- | 48 | 48 | AY.44 | 0.000292 |
S | 66 | H66H | caT | caC | 46 | 46 | B.1.617.2 | 0.000173 |
S | 66 | H66R | cAt | cGt | 43 | 43 | AY.4 | 0.000067 |
S | 66 | H66N | Cat | Aat | 43 | 43 | AY.5.4 | 0.011898 |
S | 66 | H66D | Cat | Gat | 41 | 41 | B.1.616 | 1 |
S | 66 | H66del | CAT | --- | 40 | 40 | AY.25 | 0.000241 |
S | 66 | H66H | caT | caC | 35 | 35 | AY.34 | 0.003394 |
S | 66 | H66del | CAT | --- | 35 | 35 | AY.9 | 0.002366 |
S | 66 | H66Q | caT | caG | 21 | 33 | C.37 | 0.002437 |
S | 66 | H66Q | caT | caA | 12 | 33 | C.37 | 0.001393 |
S | 66 | H66L | cAt | cTt | 27 | 31 | All | 0.000005 |
S | 66 | H66L | cAT | cTG | 2 | 31 | All | 0 |
S | 66 | H66L | CAT | TTA | 2 | 31 | All | 0 |
S | 66 | H66R | cAt | cGt | 26 | 26 | B.1.617.2 | 0.000098 |
S | 66 | H66Q | caT | caA | 24 | 24 | B.1.429 | 0.000565 |
S | 66 | H66H | caT | caC | 21 | 21 | AY.43 | 0.000093 |
S | 66 | H66del | CAT | --- | 20 | 20 | AY.103 | 0.000124 |
S | 66 | H66H | caT | caC | 20 | 20 | AY.75 | 0.00112 |
S | 66 | H66del | CAT | --- | 19 | 19 | AY.3 | 0.000189 |
S | 66 | H66del | CAT | --- | 17 | 17 | AY.102 | 0.000451 |
S | 66 | H66R | cAt | cGt | 17 | 17 | B.1.1.318 | 0.00513 |
S | 66 | H66Y | Cat | Tat | 15 | 15 | AY.4 | 0.000023 |
S | 66 | H66del | CAT | --- | 15 | 15 | B.1.1 | 0.000272 |
S | 66 | H66Y | Cat | Tat | 15 | 15 | B.1.617.2 | 0.000056 |
S | 66 | H66del | CAT | --- | 14 | 14 | B.1.177 | 0.000184 |
S | 66 | H66Q | caT | caA | 9 | 13 | B.1.1.7 | 0.000008 |
S | 66 | H66Q | caT | caG | 4 | 13 | B.1.1.7 | 0.000004 |
S | 66 | H66H | caT | caC | 13 | 13 | B.1.2 | 0.000114 |
S | 66 | H66R | cAt | cGt | 12 | 12 | AY.20 | 0.000466 |
S | 66 | H66del | CAT | --- | 12 | 12 | AY.5 | 0.000248 |
S | 66 | H66L | cAt | cTt | 12 | 12 | B.1.1.7 | 0.000011 |
S | 66 | H66del | CAT | --- | 11 | 11 | AY.34.1 | 0.005609 |
S | 66 | H66H | caT | caC | 11 | 11 | AY.4 | 0.000017 |
S | 66 | H66T | CAt | ACt | 6 | 10 | All | 0.000001 |
S | 66 | H66T | CAT | ACG | 4 | 10 | All | 0.000001 |
S | 66 | H66R | cAt | cGt | 10 | 10 | AY.118 | 0.000626 |
S | 66 | H66del | CAT | --- | 10 | 10 | AY.26 | 0.000283 |
S | 66 | H66H | caT | caC | 10 | 10 | B.1 | 0.000092 |
S | 66 | H66R | cAt | cGt | 10 | 10 | B.1.1 | 0.000181 |
S | 66 | H66N | Cat | Aat | 10 | 10 | B.1.1.7 | 0.000009 |
S | 66 | H66R | cAt | cGt | 10 | 10 | B.1.351 | 0.000297 |
S | 66 | H66del | CAT | --- | 9 | 9 | AY.4.5 | 0.000967 |
S | 66 | H66del | CAT | --- | 9 | 9 | B.1 | 0.000082 |
S | 66 | H66R | cAt | cGt | 9 | 9 | B.1.243 | 0.000626 |
S | 66 | H66del | CAT | --- | 9 | 9 | B.1.429 | 0.000212 |
S | 66 | H66del | CAT | --- | 8 | 8 | AY.42 | 0.000322 |
S | 66 | H66del | CAT | --- | 8 | 8 | AY.45 | 0.000973 |
S | 66 | H66del | CAT | --- | 8 | 8 | AY.47 | 0.000249 |
S | 66 | H66del | CAT | --- | 8 | 8 | AY.98 | 0.000632 |
S | 66 | H66del | CAT | --- | 8 | 8 | B.1.177.86 | 0.001468 |
S | 66 | H66del | CAT | --- | 8 | 8 | B.1.2 | 0.00007 |
S | 66 | H66R | cAt | cGt | 4 | 8 | P.1 | 0.000063 |
S | 66 | H66R | cAT | cGG | 2 | 8 | P.1 | 0.000032 |
S | 66 | H66R | CAT | AGG | 2 | 8 | P.1 | 0.000032 |
S | 66 | H66del | CAT | --- | 7 | 7 | AY.101 | 0.003433 |
S | 66 | H66H | caT | caC | 7 | 7 | AY.44 | 0.000043 |
S | 66 | H66del | CAT | --- | 7 | 7 | AY.46 | 0.000729 |
S | 66 | H66del | CAT | --- | 7 | 7 | B.1.160 | 0.000218 |
S | 66 | H66H | caT | caC | 7 | 7 | B.1.177.81 | 0.001325 |
S | 66 | H66H | caT | caC | 7 | 7 | B.1.351 | 0.000208 |
S | 66 | H66del | CAT | --- | 7 | 7 | P.1 | 0.00011 |
S | 66 | H66del | CAT | --- | 6 | 6 | AY.100 | 0.000276 |
S | 66 | H66Y | Cat | Tat | 6 | 6 | AY.103 | 0.000037 |
S | 66 | H66del | CAT | --- | 6 | 6 | AY.121 | 0.000812 |
S | 66 | H66Y | Cat | Tat | 6 | 6 | AY.4.2 | 0.00013 |
S | 66 | H66Q | caT | caA | 5 | 6 | B.1 | 0.000046 |
S | 66 | H66Q | caT | caG | 1 | 6 | B.1 | 0.000009 |
S | 66 | H66R | cAt | cGt | 6 | 6 | B.1.221 | 0.000426 |
S | 66 | H66Y | Cat | Tat | 6 | 6 | B.1.623 | 0.003219 |
S | 66 | H66K | CaT | AaG | 5 | 5 | All | 0.000001 |
S | 66 | H66del2 | CAT | --N | 2 | 5 | All | 0 |
S | 66 | H66del1 | Cat | -at | 2 | 5 | All | 0 |
S | 66 | H66del2 | CAT | --A | 1 | 5 | All | 0 |
S | 66 | H66del2 | cAT | c-- | 1 | 5 | All | 0 |
S | 66 | H66del1 | CAT | -NN | 1 | 5 | All | 0 |
S | 66 | H66del2 | CAt | --t | 1 | 5 | All | 0 |
S | 66 | H66del1 | CAT | -CA | 1 | 5 | All | 0 |
S | 66 | H66del1 | caT | ca- | 1 | 5 | All | 0 |
S | 66 | H66Y | Cat | Tat | 5 | 5 | AY.100 | 0.00023 |
S | 66 | H66R | cAt | cGt | 5 | 5 | AY.102 | 0.000133 |
S | 66 | H66H | caT | caC | 5 | 5 | AY.25 | 0.00003 |
S | 66 | H66del | CAT | --- | 5 | 5 | AY.33 | 0.000334 |
S | 66 | H66Y | Cat | Tat | 5 | 5 | AY.39 | 0.000124 |
S | 66 | H66R | cAt | cGt | 5 | 5 | AY.44 | 0.00003 |
S | 66 | H66del | CAT | --- | 5 | 5 | AY.85 | 0.002136 |
S | 66 | H66P | cAt | cCt | 5 | 5 | B.1.1.7 | 0.000004 |
S | 66 | H66N | Cat | Aat | 5 | 5 | B.1.243 | 0.000348 |
S | 66 | H66H | caT | caC | 5 | 5 | B.1.526 | 0.000118 |
S | 66 | H66R | cAt | cGt | 5 | 5 | B.1.621.1 | 0.002529 |
S | 66 | H66del | CAT | --- | 4 | 4 | 0.222222 | |
S | 66 | H66S | CAt | AGt | 4 | 4 | All | 0.000001 |
S | 66 | H66H | caT | caC | 4 | 4 | AY.103 | 0.000025 |
S | 66 | H66del | CAT | --- | 4 | 4 | AY.119 | 0.000141 |
S | 66 | H66del | CAT | --- | 4 | 4 | AY.20 | 0.000155 |
S | 66 | H66Y | Cat | Tat | 4 | 4 | AY.26 | 0.000113 |
S | 66 | H66R | cAt | cGt | 4 | 4 | AY.30 | 0.001583 |
S | 66 | H66Y | Cat | Tat | 4 | 4 | AY.32 | 0.00213 |
S | 66 | H66Y | Cat | Tat | 4 | 4 | AY.33 | 0.000267 |
S | 66 | H66del | CAT | --- | 4 | 4 | AY.39 | 0.000099 |
S | 66 | H66N | Cat | Aat | 4 | 4 | AY.4 | 0.000006 |
S | 66 | H66Q | caT | caA | 4 | 4 | AY.4 | 0.000006 |
S | 66 | H66Y | Cat | Tat | 4 | 4 | AY.43 | 0.000018 |
S | 66 | H66Y | Cat | Tat | 4 | 4 | AY.44 | 0.000024 |
S | 66 | H66del | CAT | --- | 4 | 4 | AY.61 | 0.000419 |
S | 66 | H66R | cAt | cGt | 4 | 4 | AY.85 | 0.001709 |
S | 66 | H66del | CAT | --- | 4 | 4 | AY.9.2 | 0.000147 |
S | 66 | H66del | CAT | --- | 4 | 4 | AY.99.2 | 0.000369 |
S | 66 | H66H | caT | caC | 4 | 4 | B.1.1 | 0.000073 |
S | 66 | H66del | CAT | --- | 4 | 4 | B.1.108 | 0.023256 |
S | 66 | H66del | CAT | --- | 4 | 4 | B.1.221 | 0.000284 |
S | 66 | H66N | Cat | Aat | 4 | 4 | P.1 | 0.000063 |
S | 66 | H66Q | caT | caG | 3 | 4 | P.1 | 0.000047 |
S | 66 | H66T | CAT | ACG | 2 | 4 | P.1 | 0.000032 |
S | 66 | H66P | cAt | cCt | 2 | 4 | P.1 | 0.000032 |
S | 66 | H66P | cAT | cCG | 2 | 4 | P.1 | 0.000032 |
S | 66 | H66T | CAt | ACt | 2 | 4 | P.1 | 0.000032 |
S | 66 | H66Q | caT | caA | 1 | 4 | P.1 | 0.000016 |
S | 66 | H66P | cAt | cCt | 3 | 3 | 0.166667 | |
S | 66 | H66F | CAT | TTC | 2 | 3 | All | 0 |
S | 66 | H66E | CaT | GaA | 2 | 3 | All | 0 |
S | 66 | H66E | CaT | GaG | 1 | 3 | All | 0 |
S | 66 | H66F | CAt | TTt | 1 | 3 | All | 0 |
S | 66 | H66R | cAt | cGt | 3 | 3 | AY.103 | 0.000019 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.113 | 0.000427 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.118 | 0.000188 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.12 | 0.000948 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.120 | 0.000112 |
S | 66 | H66R | cAt | cGt | 3 | 3 | AY.25 | 0.000018 |
S | 66 | H66P | cAT | cCG | 1 | 3 | AY.3 | 0.00001 |
S | 66 | H66P | cAt | cCt | 1 | 3 | AY.3 | 0.00001 |
S | 66 | H66P | cAT | cCC | 1 | 3 | AY.3 | 0.00001 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.38 | 0.001498 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.39.1 | 0.000119 |
S | 66 | H66H | caT | caC | 3 | 3 | AY.4.2 | 0.000065 |
S | 66 | H66Q | caT | caG | 3 | 3 | AY.43 | 0.000013 |
S | 66 | H66R | cAt | cGt | 3 | 3 | AY.47 | 0.000093 |
S | 66 | H66H | caT | caC | 3 | 3 | AY.5.3 | 0.001012 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.75.1 | 0.000541 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.9.1 | 0.000251 |
S | 66 | H66del | CAT | --- | 3 | 3 | AY.98.1 | 0.000145 |
S | 66 | H66R | cAt | cGt | 3 | 3 | B.1 | 0.000027 |
S | 66 | H66R | cAt | cGt | 3 | 3 | B.1.1.214 | 0.000166 |
S | 66 | H66D | Cat | Gat | 3 | 3 | B.1.1.25 | 0.001706 |
S | 66 | H66R | CAT | AGG | 1 | 3 | B.1.1.28 | 0.000311 |
S | 66 | H66R | cAT | cGG | 1 | 3 | B.1.1.28 | 0.000311 |
S | 66 | H66R | cAt | cGt | 1 | 3 | B.1.1.28 | 0.000311 |
S | 66 | H66H | caT | caC | 3 | 3 | B.1.1.306 | 0.001315 |
S | 66 | H66Q | caT | caA | 3 | 3 | B.1.1.523 | 0.004687 |
S | 66 | H66R | cAt | cGt | 3 | 3 | B.1.177 | 0.00004 |
S | 66 | H66R | cAt | cGt | 3 | 3 | B.1.2 | 0.000026 |
S | 66 | H66L | cAt | cTt | 3 | 3 | B.1.258 | 0.0002 |
S | 66 | H66Y | Cat | Tat | 3 | 3 | B.1.351 | 0.000089 |
S | 66 | H66K | CaT | AaG | 3 | 3 | P.1 | 0.000047 |
S | 66 | H66H | caT | caC | 3 | 3 | P.1 | 0.000047 |
S | 66 | H66H | caT | caC | 3 | 3 | P.2 | 0.00056 |
S | 66 | H66R | cAt | cGt | 1 | 3 | P.2 | 0.000187 |
S | 66 | H66R | cAT | cGG | 1 | 3 | P.2 | 0.000187 |
S | 66 | H66R | CAT | AGG | 1 | 3 | P.2 | 0.000187 |
S | 66 | H66L | CAT | TTA | 2 | 2 | 0.111111 | |
S | 66 | H66X | CAT | TGA | 2 | 2 | 0.111111 | |
S | 66 | H66F | CAT | TTC | 2 | 2 | 0.111111 | |
S | 66 | H66C | CAT | TGC | 2 | 2 | 0.111111 | |
S | 66 | H66C | CAT | TGC | 2 | 2 | All | 0 |
S | 66 | H66X | CAT | TGA | 2 | 2 | All | 0 |
S | 66 | H66V | CAT | GTG | 1 | 2 | All | 0 |
S | 66 | H66V | CAt | GTt | 1 | 2 | All | 0 |
S | 66 | H66R | cAt | cGt | 2 | 2 | AY.100 | 0.000092 |
S | 66 | H66H | caT | caC | 2 | 2 | AY.102 | 0.000053 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.108 | 0.002205 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.111 | 0.000366 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.117 | 0.000169 |
S | 66 | H66H | caT | caC | 2 | 2 | AY.119 | 0.000071 |
S | 66 | H66Y | Cat | Tat | 2 | 2 | AY.16 | 0.000759 |
S | 66 | H66Q | caT | caA | 2 | 2 | AY.16 | 0.000759 |
S | 66 | H66R | cAt | cGt | 2 | 2 | AY.19 | 0.002281 |
S | 66 | H66P | cAt | cCt | 2 | 2 | AY.25 | 0.000012 |
S | 66 | H66H | caT | caC | 2 | 2 | AY.3 | 0.00002 |
S | 66 | H66Y | Cat | Tat | 2 | 2 | AY.3 | 0.00002 |
S | 66 | H66R | cAt | cGt | 2 | 2 | AY.3 | 0.00002 |
S | 66 | H66Y | Cat | Tat | 2 | 2 | AY.3.1 | 0.000171 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.3.1 | 0.000171 |
S | 66 | H66Q | caT | caG | 2 | 2 | AY.33 | 0.000134 |
S | 66 | H66H | caT | caC | 2 | 2 | AY.39 | 0.000049 |
S | 66 | H66L | cAt | cTt | 2 | 2 | AY.4 | 0.000003 |
S | 66 | H66P | cAt | cCt | 2 | 2 | AY.4 | 0.000003 |
S | 66 | H66H | caT | caC | 2 | 2 | AY.45 | 0.000243 |
S | 66 | H66Y | Cat | Tat | 2 | 2 | AY.45 | 0.000243 |
S | 66 | H66Y | Cat | Tat | 2 | 2 | AY.46.3 | 0.001867 |
S | 66 | H66R | cAt | cGt | 2 | 2 | AY.5 | 0.000041 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.52 | 0.001629 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.54 | 0.000191 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.6 | 0.000082 |
S | 66 | H66Y | Cat | Tat | 2 | 2 | AY.63 | 0.000774 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.67 | 0.000929 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.7.2 | 0.001119 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.71 | 0.00095 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.75 | 0.000112 |
S | 66 | H66R | CAT | AGA | 1 | 2 | AY.75 | 0.000056 |
S | 66 | H66R | cAt | cGt | 1 | 2 | AY.75 | 0.000056 |
S | 66 | H66R | cAt | cGt | 2 | 2 | AY.9 | 0.000135 |
S | 66 | H66del | CAT | --- | 2 | 2 | AY.94 | 0.000885 |
S | 66 | H66H | caT | caC | 2 | 2 | AY.99.2 | 0.000184 |
S | 66 | H66Y | Cat | Tat | 2 | 2 | B.1.1 | 0.000036 |
S | 66 | H66Q | caT | caG | 1 | 2 | B.1.1 | 0.000018 |
S | 66 | H66Q | caT | caA | 1 | 2 | B.1.1 | 0.000018 |
S | 66 | H66H | caT | caC | 2 | 2 | B.1.1.153 | 0.002191 |
S | 66 | H66R | cAt | cGt | 2 | 2 | B.1.1.220 | 0.003717 |
S | 66 | H66P | cAt | cCt | 1 | 2 | B.1.1.28 | 0.000311 |
S | 66 | H66T | CAT | ACG | 1 | 2 | B.1.1.28 | 0.000311 |
S | 66 | H66T | CAt | ACt | 1 | 2 | B.1.1.28 | 0.000311 |
S | 66 | H66P | cAT | cCG | 1 | 2 | B.1.1.28 | 0.000311 |
S | 66 | H66D | Cat | Gat | 2 | 2 | B.1.1.33 | 0.000842 |
S | 66 | H66Q | caT | caA | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66E | CaT | GaA | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66Q | caT | caG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66V | CAt | GTt | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66V | CAT | GTG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66E | CaT | GaG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66L | cAT | cTG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66L | cAt | cTt | 1 | 2 | B.1.1.33 | 0.000421 |
S | 66 | H66Q | caT | caA | 2 | 2 | B.1.1.348 | 0.001592 |
S | 66 | H66R | cAt | cGt | 2 | 2 | B.1.1.452 | 0.222222 |
S | 66 | H66R | cAt | cGt | 2 | 2 | B.1.1.464 | 0.002946 |
S | 66 | H66R | cAt | cGt | 2 | 2 | B.1.160 | 0.000062 |
S | 66 | H66del | CAT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
S | 66 | H66del | CAT | --- | 2 | 2 | B.1.179 | 0.007519 |
S | 66 | H66H | caT | caC | 2 | 2 | B.1.243 | 0.000139 |
S | 66 | H66del | CAT | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 66 | H66P | cAt | cCt | 2 | 2 | B.1.258.7 | 0.003824 |
S | 66 | H66del | CAT | --- | 2 | 2 | B.1.351 | 0.000059 |
S | 66 | H66Q | caT | caA | 2 | 2 | B.1.351.3 | 0.001753 |
S | 66 | H66N | Cat | Aat | 2 | 2 | B.1.427 | 0.000101 |
S | 66 | H66P | cAt | cCt | 2 | 2 | B.1.429 | 0.000047 |
S | 66 | H66del | CAT | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 66 | H66R | cAt | cGt | 2 | 2 | B.1.560 | 0.009259 |
S | 66 | H66L | cAt | cTt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 66 | H66H | caT | caC | 2 | 2 | B.1.621 | 0.000177 |
S | 66 | H66S | CAt | AGt | 2 | 2 | P.1 | 0.000032 |
S | 66 | H66del | CAT | --- | 2 | 2 | P.1.12 | 0.000968 |
S | 66 | H66T | CAt | ACt | 1 | 2 | P.2 | 0.000187 |
S | 66 | H66P | cAt | cCt | 1 | 2 | P.2 | 0.000187 |
S | 66 | H66P | cAT | cCG | 1 | 2 | P.2 | 0.000187 |
S | 66 | H66T | CAT | ACG | 1 | 2 | P.2 | 0.000187 |
S | 66 | H66del | CAT | --- | 2 | 2 | R.1 | 0.00018 |
S | 66 | H66R | cAt | cGt | 1 | 1 | A | 0.000387 |
S | 66 | H66L | cAt | cTt | 1 | 1 | AY.100 | 0.000046 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.100 | 0.000046 |
S | 66 | H66K | CaT | AaG | 1 | 1 | AY.102 | 0.000027 |
S | 66 | H66Q | caT | caG | 1 | 1 | AY.102 | 0.000027 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.102 | 0.000027 |
S | 66 | H66Q | caT | caA | 1 | 1 | AY.103 | 0.000006 |
S | 66 | H66P | cAt | cCt | 1 | 1 | AY.103 | 0.000006 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.105 | 0.000643 |
S | 66 | H66L | cAt | cTt | 1 | 1 | AY.107 | 0.000466 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.11 | 0.001339 |
S | 66 | H66L | cAT | cTG | 1 | 1 | AY.110 | 0.000113 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.111 | 0.000183 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.113 | 0.000142 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.116 | 0.000287 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.117 | 0.000085 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.117 | 0.000085 |
S | 66 | H66Q | caT | caA | 1 | 1 | AY.119 | 0.000035 |
S | 66 | H66P | cAt | cCt | 1 | 1 | AY.119 | 0.000035 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.120 | 0.000037 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.120 | 0.000037 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.120 | 0.000037 |
S | 66 | H66Q | caT | caG | 1 | 1 | AY.120 | 0.000037 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.14 | 0.000088 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.14 | 0.000088 |
S | 66 | H66del2 | CAT | --A | 1 | 1 | AY.16 | 0.00038 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.16 | 0.00038 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.20 | 0.000039 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.20 | 0.000039 |
S | 66 | H66P | cAt | cCt | 1 | 1 | AY.23 | 0.00007 |
S | 66 | H66Q | caT | caA | 1 | 1 | AY.23 | 0.00007 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.24 | 0.000431 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.25 | 0.000006 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.26 | 0.000028 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.27 | 0.000065 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.29 | 0.000016 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.29 | 0.000016 |
S | 66 | H66Q | caT | caG | 1 | 1 | AY.3 | 0.00001 |
S | 66 | H66D | Cat | Gat | 1 | 1 | AY.30 | 0.000396 |
S | 66 | H66Q | caT | caG | 1 | 1 | AY.30 | 0.000396 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.30 | 0.000396 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.30 | 0.000396 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.34 | 0.000097 |
S | 66 | H66del1 | CAT | -NN | 1 | 1 | AY.34.1 | 0.00051 |
S | 66 | H66D | Cat | Gat | 1 | 1 | AY.39.2 | 0.001541 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.39.2 | 0.001541 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.39.2 | 0.001541 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.4.2 | 0.000022 |
S | 66 | H66Q | caT | caA | 1 | 1 | AY.4.2 | 0.000022 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.4.2 | 0.000022 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.4.4 | 0.000409 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
S | 66 | H66Q | caT | caG | 1 | 1 | AY.4.5 | 0.000107 |
S | 66 | H66P | cAt | cCt | 1 | 1 | AY.4.5 | 0.000107 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.41 | 0.000294 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.42 | 0.00004 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.42 | 0.00004 |
S | 66 | H66D | Cat | Gat | 1 | 1 | AY.43 | 0.000004 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.43 | 0.000004 |
S | 66 | H66del1 | CAT | -CA | 1 | 1 | AY.43 | 0.000004 |
S | 66 | H66P | cAt | cCt | 1 | 1 | AY.43 | 0.000004 |
S | 66 | H66D | Cat | Gat | 1 | 1 | AY.44 | 0.000006 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.45 | 0.000122 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.46 | 0.000104 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.46.2 | 0.000635 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.46.5 | 0.000198 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.46.6 | 0.000072 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.46.6 | 0.000072 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.47 | 0.000031 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.5 | 0.000021 |
S | 66 | H66del2 | CAT | --N | 1 | 1 | AY.5 | 0.000021 |
S | 66 | H66L | cAt | cTt | 1 | 1 | AY.5 | 0.000021 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.5.4 | 0.000277 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.54 | 0.000095 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.56 | 0.001605 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.57 | 0.000656 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.57 | 0.000656 |
S | 66 | H66Q | caT | caG | 1 | 1 | AY.59 | 0.00053 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.59 | 0.00053 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.59 | 0.00053 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.6 | 0.000041 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.6 | 0.000041 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 66 | H66L | cAt | cTt | 1 | 1 | AY.61 | 0.000105 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.64 | 0.000595 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
S | 66 | H66H | caT | caC | 1 | 1 | AY.69 | 0.000187 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.70 | 0.000209 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.71 | 0.000475 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.73 | 0.000665 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.73 | 0.000665 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.74 | 0.000116 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.75 | 0.000056 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.75.1 | 0.00018 |
S | 66 | H66Q | caT | caA | 1 | 1 | AY.75.1 | 0.00018 |
S | 66 | H66N | Cat | Aat | 1 | 1 | AY.75.1 | 0.00018 |
S | 66 | H66R | cAT | cGC | 1 | 1 | AY.79 | 0.001211 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.84 | 0.000437 |
S | 66 | H66D | Cat | Gat | 1 | 1 | AY.85 | 0.000427 |
S | 66 | H66K | CaT | AaG | 1 | 1 | AY.85 | 0.000427 |
S | 66 | H66L | cAt | cTt | 1 | 1 | AY.9 | 0.000068 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.9.2 | 0.000037 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.92 | 0.000287 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | AY.92 | 0.000287 |
S | 66 | H66Q | caT | caA | 1 | 1 | AY.98.1 | 0.000048 |
S | 66 | H66del | CAT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 66 | H66R | cAt | cGt | 1 | 1 | AY.99 | 0.001049 |
S | 66 | H66del | CAT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B | 0.000128 |
S | 66 | H66del1 | Cat | -at | 1 | 1 | B.1 | 0.000009 |
S | 66 | H66del2 | CAT | --N | 1 | 1 | B.1 | 0.000009 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1 | 0.000009 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1 | 0.000009 |
S | 66 | H66E | CaT | GaA | 1 | 1 | B.1.1 | 0.000018 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.118 | 0.010204 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.148 | 0.008772 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.1.25 | 0.000569 |
S | 66 | H66S | CAt | AGt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.1.294 | 0.001266 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.1.317 | 0.000412 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1.1.335 | 0.012987 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.1.354 | 0.004386 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.1.370 | 0.012658 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 66 | H66L | cAt | cTt | 1 | 1 | B.1.1.51 | 0.001718 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.523 | 0.001563 |
S | 66 | H66T | CAt | ACt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 66 | H66del2 | cAT | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.110.3 | 0.000718 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.160.32 | 0.004292 |
S | 66 | H66Q | caT | caG | 1 | 1 | B.1.177 | 0.000013 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.177.10 | 0.000878 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.177.44 | 0.000519 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.177.56 | 0.000668 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1.177.60 | 0.000218 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.77 | 0.000726 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1.2 | 0.000009 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1.2 | 0.000009 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.232 | 0.000537 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.234 | 0.000132 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.239 | 0.001221 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1.240 | 0.000216 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1.243 | 0.00007 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.258.24 | 0.010753 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.260 | 0.003344 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1.311 | 0.000275 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.332 | 0.003497 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.351.2 | 0.000303 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.36.35 | 0.002604 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.36.9 | 0.003215 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.391 | 0.001127 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 66 | H66Q | caT | caA | 1 | 1 | B.1.427 | 0.00005 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.427 | 0.00005 |
S | 66 | H66P | cAt | cCt | 1 | 1 | B.1.427 | 0.00005 |
S | 66 | H66T | CAt | ACt | 1 | 1 | B.1.427 | 0.00005 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.427 | 0.00005 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1.429 | 0.000024 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1.429 | 0.000024 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.438.1 | 0.000107 |
S | 66 | H66Q | caT | caA | 1 | 1 | B.1.441 | 0.009615 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.1.525 | 0.000113 |
S | 66 | H66L | cAt | cTt | 1 | 1 | B.1.525 | 0.000113 |
S | 66 | H66R | cAT | cGG | 1 | 1 | B.1.525 | 0.000113 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1.526 | 0.000024 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.540 | 0.009709 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.575.2 | 0.004808 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1.576 | 0.000907 |
S | 66 | H66Q | caT | caG | 1 | 1 | B.1.577 | 0.000687 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.596 | 0.000087 |
S | 66 | H66P | cAt | cCt | 1 | 1 | B.1.596 | 0.000087 |
S | 66 | H66H | caT | caC | 1 | 1 | B.1.596 | 0.000087 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1.597 | 0.00463 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 66 | H66del1 | caT | ca- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 66 | H66del1 | Cat | -at | 1 | 1 | B.1.617.2 | 0.000004 |
S | 66 | H66Q | caT | caG | 1 | 1 | B.1.617.2 | 0.000004 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 66 | H66R | cAt | cGt | 1 | 1 | B.1.621 | 0.000089 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.1.631 | 0.003367 |
S | 66 | H66del | CAT | --- | 1 | 1 | B.1.637 | 0.000073 |
S | 66 | H66H | caT | caC | 1 | 1 | B.3 | 0.000831 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | B.55 | 0.00295 |
S | 66 | H66N | Cat | Aat | 1 | 1 | B.6 | 0.00091 |
S | 66 | H66del | CAT | --- | 1 | 1 | C.35 | 0.000774 |
S | 66 | H66R | cAt | cGt | 1 | 1 | C.36.3 | 0.000567 |
S | 66 | H66del | CAT | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 66 | H66H | caT | caC | 1 | 1 | C.37 | 0.000116 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | C.37 | 0.000116 |
S | 66 | H66del2 | CAt | --t | 1 | 1 | C.37 | 0.000116 |
S | 66 | H66F | CAt | TTt | 1 | 1 | C.37 | 0.000116 |
S | 66 | H66Y | Cat | Tat | 1 | 1 | D.2 | 0.000075 |
S | 66 | H66del | CAT | --- | 1 | 1 | P.1.10.1 | 0.00813 |
S | 66 | H66Q | caT | caA | 1 | 1 | P.1.14 | 0.000048 |
S | 66 | H66S | CAt | AGt | 1 | 1 | P.2 | 0.000187 |
S | 66 | H66R | cAt | cGt | 1 | 1 | P.7 | 0.004367 |
S | 66 | H66H | caT | caC | 1 | 1 | Q.1 | 0.000126 |
S | 66 | H66del | CAT | --- | 1 | 1 | Q.1 | 0.000126 |
S | 66 | H66del | CAT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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