CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 658 | N658N | syn | aaC | aaT | 1430 | 1430 | 1 | 23534-23536 | |
S | 658 | N658K | nonsyn | aaC | aaA | 1024 | 1004 | 0.980469 | 23534-23536 | |
S | 658 | N658K | nonsyn | aaC | aaG | 1024 | 20 | 0.0195312 | 23534-23536 | |
S | 658 | N658D | nonsyn | Aac | Gac | 300 | 298 | 0.993333 | 23534-23536 | |
S | 658 | N658D | nonsyn | AaC | GaT | 300 | 2 | 0.00666667 | 23534-23536 | |
S | 658 | N658Y | nonsyn | Aac | Tac | 175 | 175 | 1 | 23534-23536 | |
S | 658 | N658H | nonsyn | Aac | Cac | 95 | 95 | 1 | 23534-23536 | |
S | 658 | N658T | nonsyn | aAc | aCc | 89 | 89 | 1 | 23534-23536 | |
S | 658 | N658S | nonsyn | aAc | aGc | 59 | 58 | 0.983051 | 23534-23536 | |
S | 658 | N658S | nonsyn | AAc | TCc | 59 | 1 | 0.0169492 | 23534-23536 | |
S | 658 | N658del | del | AAC | --- | 50 | 50 | 1 | 23534-23536 | |
S | 658 | N658I | nonsyn | aAc | aTc | 14 | 14 | 1 | 23534-23536 | |
S | 658 | N658del1 | del | AAC | GG- | 6 | 3 | 0.5 | 23534-23536 | |
S | 658 | N658del1 | del | AaC | -aT | 6 | 2 | 0.333333 | 23534-23536 | |
S | 658 | N658del1 | del | Aac | -ac | 6 | 1 | 0.166667 | 23534-23536 | |
S | 658 | N658L | nonsyn | AAc | CTc | 5 | 5 | 1 | 23534-23536 | |
S | 658 | N658A | nonsyn | AAC | GCT | 2 | 2 | 1 | 23534-23536 | |
S | 658 | N658V | nonsyn | AAC | GTG | 1 | 1 | 1 | 23534-23536 | |
S | 658 | N658del2 | del | AAC | R-- | 1 | 1 | 1 | 23534-23536 | |
S | 658 | N658C | nonsyn | AAc | TGc | 1 | 1 | 1 | 23534-23536 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 658 | N658N | aaC | aaT | 1430 | 1430 | All | 0.000274 |
S | 658 | N658K | aaC | aaA | 1004 | 1024 | All | 0.000192 |
S | 658 | N658K | aaC | aaG | 20 | 1024 | All | 0.000004 |
S | 658 | N658K | aaC | aaA | 384 | 384 | AY.103 | 0.002384 |
S | 658 | N658N | aaC | aaT | 311 | 311 | P.1.14 | 0.014866 |
S | 658 | N658D | Aac | Gac | 298 | 300 | All | 0.000057 |
S | 658 | N658D | AaC | GaT | 2 | 300 | All | 0 |
S | 658 | N658K | aaC | aaA | 252 | 252 | B.1.1.7 | 0.000226 |
S | 658 | N658K | aaC | aaA | 185 | 185 | B.1.1.204 | 0.56231 |
S | 658 | N658Y | Aac | Tac | 175 | 175 | All | 0.000033 |
S | 658 | N658N | aaC | aaT | 174 | 174 | B.1.2 | 0.001532 |
S | 658 | N658D | Aac | Gac | 105 | 105 | B.1.177.60 | 0.022936 |
S | 658 | N658H | Aac | Cac | 95 | 95 | All | 0.000018 |
S | 658 | N658T | aAc | aCc | 89 | 89 | All | 0.000017 |
S | 658 | N658T | aAc | aCc | 78 | 78 | B.1.1.28 | 0.024276 |
S | 658 | N658Y | Aac | Tac | 76 | 76 | AY.4 | 0.000118 |
S | 658 | N658N | aaC | aaT | 74 | 74 | AY.103 | 0.000459 |
S | 658 | N658N | aaC | aaT | 65 | 65 | AY.4 | 0.000101 |
S | 658 | N658H | Aac | Cac | 62 | 62 | AY.5 | 0.00128 |
S | 658 | N658S | aAc | aGc | 58 | 59 | All | 0.000011 |
S | 658 | N658S | AAc | TCc | 1 | 59 | All | 0 |
S | 658 | N658del | AAC | --- | 50 | 50 | All | 0.00001 |
S | 658 | N658N | aaC | aaT | 50 | 50 | B.1.591 | 0.531915 |
S | 658 | N658N | aaC | aaT | 48 | 48 | B.1.1.7 | 0.000043 |
S | 658 | N658N | aaC | aaT | 47 | 47 | AY.25 | 0.000283 |
S | 658 | N658N | aaC | aaT | 47 | 47 | B.1 | 0.00043 |
S | 658 | N658N | aaC | aaT | 46 | 46 | B.1.1 | 0.000834 |
S | 658 | N658K | aaC | aaA | 45 | 45 | AY.4 | 0.00007 |
S | 658 | N658K | aaC | aaA | 42 | 42 | AY.3.1 | 0.003581 |
S | 658 | N658N | aaC | aaT | 40 | 40 | B.1.429 | 0.000941 |
S | 658 | N658N | aaC | aaT | 36 | 36 | AY.20 | 0.001399 |
S | 658 | N658N | aaC | aaT | 29 | 29 | P.1 | 0.000457 |
S | 658 | N658Y | Aac | Tac | 26 | 26 | AY.103 | 0.000161 |
S | 658 | N658D | Aac | Gac | 26 | 26 | B.1.617.2 | 0.000098 |
S | 658 | N658N | aaC | aaT | 25 | 25 | B.1.427 | 0.001262 |
S | 658 | N658K | aaC | aaA | 23 | 23 | AY.43 | 0.000102 |
S | 658 | N658N | aaC | aaT | 23 | 23 | B.1.617.2 | 0.000087 |
S | 658 | N658D | Aac | Gac | 21 | 21 | AY.4 | 0.000033 |
S | 658 | N658N | aaC | aaT | 19 | 19 | AY.113 | 0.002705 |
S | 658 | N658Y | Aac | Tac | 19 | 19 | B.1.351 | 0.000565 |
S | 658 | N658N | aaC | aaT | 18 | 18 | B.1.523 | 0.044118 |
S | 658 | N658N | aaC | aaT | 17 | 17 | B.1.438.1 | 0.001823 |
S | 658 | N658S | aAc | aGc | 17 | 17 | B.1.637 | 0.001242 |
S | 658 | N658N | aaC | aaT | 16 | 16 | B.1.177 | 0.000211 |
S | 658 | N658N | aaC | aaT | 15 | 15 | AY.45 | 0.001825 |
S | 658 | N658D | Aac | Gac | 15 | 15 | B.1.1.448 | 0.030488 |
S | 658 | N658I | aAc | aTc | 14 | 14 | All | 0.000003 |
S | 658 | N658K | aaC | aaG | 14 | 14 | AY.29 | 0.000221 |
S | 658 | N658K | aaC | aaA | 14 | 14 | AY.3 | 0.000139 |
S | 658 | N658N | aaC | aaT | 13 | 13 | AY.120 | 0.000483 |
S | 658 | N658N | aaC | aaT | 13 | 13 | B.1.234 | 0.001715 |
S | 658 | N658N | aaC | aaT | 13 | 13 | B.1.243 | 0.000905 |
S | 658 | N658N | aaC | aaT | 13 | 13 | B.1.593 | 0.141304 |
S | 658 | N658N | aaC | aaT | 12 | 12 | A.26 | 0.923077 |
S | 658 | N658N | aaC | aaT | 12 | 12 | B.1.177.87 | 0.008734 |
S | 658 | N658H | Aac | Cac | 12 | 12 | B.1.617.2 | 0.000045 |
S | 658 | N658H | Aac | Cac | 11 | 11 | AY.39 | 0.000272 |
S | 658 | N658N | aaC | aaT | 10 | 10 | AY.43 | 0.000044 |
S | 658 | N658N | aaC | aaT | 10 | 10 | AY.44 | 0.000061 |
S | 658 | N658D | Aac | Gac | 10 | 10 | B.1.1.25 | 0.005685 |
S | 658 | N658D | Aac | Gac | 10 | 10 | B.1.177.81 | 0.001893 |
S | 658 | N658D | Aac | Gac | 10 | 10 | B.1.429 | 0.000235 |
S | 658 | N658N | aaC | aaT | 9 | 9 | AY.3 | 0.00009 |
S | 658 | N658D | Aac | Gac | 9 | 9 | B.1.203 | 0.5625 |
S | 658 | N658Y | Aac | Tac | 9 | 9 | B.1.223 | 0.025 |
S | 658 | N658del | AAC | --- | 8 | 8 | B.1 | 0.000073 |
S | 658 | N658D | Aac | Gac | 8 | 8 | B.1.1 | 0.000145 |
S | 658 | N658N | aaC | aaT | 8 | 8 | B.1.1.432 | 0.010127 |
S | 658 | N658N | aaC | aaT | 8 | 8 | B.1.1.519 | 0.000318 |
S | 658 | N658N | aaC | aaT | 8 | 8 | B.1.177.44 | 0.004152 |
S | 658 | N658N | aaC | aaT | 8 | 8 | B.1.221 | 0.000568 |
S | 658 | N658N | aaC | aaT | 8 | 8 | B.1.241 | 0.006494 |
S | 658 | N658S | aAc | aGc | 8 | 8 | B.1.429 | 0.000188 |
S | 658 | N658D | Aac | Gac | 8 | 8 | P.1 | 0.000126 |
S | 658 | N658N | aaC | aaT | 8 | 8 | R.1 | 0.00072 |
S | 658 | N658N | aaC | aaT | 7 | 7 | AY.33 | 0.000467 |
S | 658 | N658D | Aac | Gac | 7 | 7 | B.1 | 0.000064 |
S | 658 | N658del | AAC | --- | 7 | 7 | B.1.1.7 | 0.000006 |
S | 658 | N658N | aaC | aaT | 7 | 7 | B.1.596 | 0.00061 |
S | 658 | N658D | Aac | Gac | 7 | 7 | B.1.628 | 0.002467 |
S | 658 | N658K | aaC | aaA | 7 | 7 | Q.1 | 0.000884 |
S | 658 | N658del1 | AAC | GG- | 3 | 6 | All | 0.000001 |
S | 658 | N658del1 | AaC | -aT | 2 | 6 | All | 0 |
S | 658 | N658del1 | Aac | -ac | 1 | 6 | All | 0 |
S | 658 | N658S | aAc | aGc | 6 | 6 | AY.5 | 0.000124 |
S | 658 | N658Y | Aac | Tac | 6 | 6 | B.1.1.222 | 0.001224 |
S | 658 | N658D | Aac | Gac | 6 | 6 | B.1.1.7 | 0.000005 |
S | 658 | N658N | aaC | aaT | 6 | 6 | B.1.177.81 | 0.001136 |
S | 658 | N658D | Aac | Gac | 6 | 6 | B.1.2 | 0.000053 |
S | 658 | N658S | aAc | aGc | 6 | 6 | B.1.36.29 | 0.003104 |
S | 658 | N658N | aaC | aaT | 6 | 6 | B.1.404 | 0.007812 |
S | 658 | N658K | aaC | aaA | 6 | 6 | B.1.617.2 | 0.000023 |
S | 658 | N658L | AAc | CTc | 5 | 5 | All | 0.000001 |
S | 658 | N658D | Aac | Gac | 5 | 5 | AY.114 | 0.001156 |
S | 658 | N658D | Aac | Gac | 5 | 5 | AY.25 | 0.00003 |
S | 658 | N658N | aaC | aaT | 5 | 5 | AY.47 | 0.000156 |
S | 658 | N658N | aaC | aaT | 5 | 5 | B.1.1.171 | 0.018382 |
S | 658 | N658D | Aac | Gac | 5 | 5 | B.1.177 | 0.000066 |
S | 658 | N658N | aaC | aaT | 5 | 5 | B.1.258.14 | 0.004902 |
S | 658 | N658N | aaC | aaT | 5 | 5 | B.6 | 0.00455 |
S | 658 | N658N | aaC | aaT | 5 | 5 | P.2 | 0.000933 |
S | 658 | N658N | aaC | aaT | 4 | 4 | AY.29 | 0.000063 |
S | 658 | N658N | aaC | aaT | 4 | 4 | B.1.1.25 | 0.002274 |
S | 658 | N658S | aAc | aGc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 658 | N658K | aaC | aaA | 4 | 4 | B.1.315 | 0.024242 |
S | 658 | N658I | aAc | aTc | 4 | 4 | B.1.617.2 | 0.000015 |
S | 658 | N658del | AAC | --- | 4 | 4 | P.1 | 0.000063 |
S | 658 | N658N | aaC | aaT | 3 | 3 | AY.10 | 0.00159 |
S | 658 | N658N | aaC | aaT | 3 | 3 | AY.100 | 0.000138 |
S | 658 | N658D | Aac | Gac | 3 | 3 | AY.103 | 0.000019 |
S | 658 | N658N | aaC | aaT | 3 | 3 | AY.116 | 0.00086 |
S | 658 | N658N | aaC | aaT | 3 | 3 | AY.119 | 0.000106 |
S | 658 | N658del | AAC | --- | 3 | 3 | AY.25 | 0.000018 |
S | 658 | N658Y | Aac | Tac | 3 | 3 | AY.25 | 0.000018 |
S | 658 | N658N | aaC | aaT | 3 | 3 | AY.26 | 0.000085 |
S | 658 | N658Y | Aac | Tac | 3 | 3 | AY.29 | 0.000047 |
S | 658 | N658Y | Aac | Tac | 3 | 3 | AY.33 | 0.0002 |
S | 658 | N658del | AAC | --- | 3 | 3 | AY.43 | 0.000013 |
S | 658 | N658K | aaC | aaA | 3 | 3 | AY.44 | 0.000018 |
S | 658 | N658D | Aac | Gac | 3 | 3 | AY.96 | 0.006224 |
S | 658 | N658K | aaC | aaG | 2 | 3 | B.1.1 | 0.000036 |
S | 658 | N658K | aaC | aaA | 1 | 3 | B.1.1 | 0.000018 |
S | 658 | N658N | aaC | aaT | 3 | 3 | B.1.1.39 | 0.001529 |
S | 658 | N658S | aAc | aGc | 3 | 3 | B.1.1.519 | 0.000119 |
S | 658 | N658I | aAc | aTc | 3 | 3 | B.1.1.7 | 0.000003 |
S | 658 | N658Y | Aac | Tac | 3 | 3 | B.1.1.7 | 0.000003 |
S | 658 | N658N | aaC | aaT | 3 | 3 | B.1.160 | 0.000094 |
S | 658 | N658K | aaC | aaA | 3 | 3 | B.1.2 | 0.000026 |
S | 658 | N658N | aaC | aaT | 3 | 3 | B.1.526 | 0.000071 |
S | 658 | N658N | aaC | aaT | 3 | 3 | B.1.541 | 0.013274 |
S | 658 | N658N | aaC | aaT | 3 | 3 | B.1.561 | 0.001191 |
S | 658 | N658Y | Aac | Tac | 3 | 3 | B.1.617.2 | 0.000011 |
S | 658 | N658del | AAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 658 | N658S | aAc | aGc | 2 | 3 | B.1.617.2 | 0.000008 |
S | 658 | N658S | AAc | TCc | 1 | 3 | B.1.617.2 | 0.000004 |
S | 658 | N658del | AAC | --- | 3 | 3 | B.1.621 | 0.000266 |
S | 658 | N658N | aaC | aaT | 3 | 3 | B.1.9.5 | 0.017045 |
S | 658 | N658del | AAC | --- | 3 | 3 | P.1.15 | 0.000697 |
S | 658 | N658K | aaC | aaA | 3 | 3 | P.2 | 0.00056 |
S | 658 | N658D | AaC | GaT | 2 | 2 | 0.111111 | |
S | 658 | N658Y | Aac | Tac | 2 | 2 | 0.111111 | |
S | 658 | N658A | AAC | GCT | 2 | 2 | 0.111111 | |
S | 658 | N658N | aaC | aaT | 2 | 2 | A | 0.000774 |
S | 658 | N658A | AAC | GCT | 2 | 2 | All | 0 |
S | 658 | N658D | Aac | Gac | 2 | 2 | AY.118 | 0.000125 |
S | 658 | N658N | aaC | aaT | 2 | 2 | AY.39 | 0.000049 |
S | 658 | N658D | Aac | Gac | 2 | 2 | AY.4.2 | 0.000043 |
S | 658 | N658K | aaC | aaA | 2 | 2 | AY.42 | 0.00008 |
S | 658 | N658S | aAc | aGc | 2 | 2 | AY.43 | 0.000009 |
S | 658 | N658D | Aac | Gac | 2 | 2 | AY.43 | 0.000009 |
S | 658 | N658Y | Aac | Tac | 2 | 2 | AY.43 | 0.000009 |
S | 658 | N658N | aaC | aaT | 2 | 2 | AY.46.4 | 0.000329 |
S | 658 | N658N | aaC | aaT | 2 | 2 | AY.75 | 0.000112 |
S | 658 | N658K | aaC | aaA | 2 | 2 | AY.78 | 0.003082 |
S | 658 | N658N | aaC | aaT | 2 | 2 | AY.9 | 0.000135 |
S | 658 | N658N | aaC | aaT | 2 | 2 | B | 0.000256 |
S | 658 | N658K | aaC | aaG | 1 | 2 | B.1 | 0.000009 |
S | 658 | N658K | aaC | aaA | 1 | 2 | B.1 | 0.000009 |
S | 658 | N658K | aaC | aaG | 2 | 2 | B.1.1.139 | 0.045455 |
S | 658 | N658N | aaC | aaT | 2 | 2 | B.1.1.214 | 0.000111 |
S | 658 | N658Y | Aac | Tac | 2 | 2 | B.1.1.348 | 0.001592 |
S | 658 | N658N | aaC | aaT | 2 | 2 | B.1.1.448 | 0.004065 |
S | 658 | N658T | aAc | aCc | 2 | 2 | B.1.1.7 | 0.000002 |
S | 658 | N658H | Aac | Cac | 2 | 2 | B.1.1.7 | 0.000002 |
S | 658 | N658Y | Aac | Tac | 2 | 2 | B.1.139 | 0.001466 |
S | 658 | N658N | aaC | aaT | 2 | 2 | B.1.157 | 0.00597 |
S | 658 | N658D | Aac | Gac | 2 | 2 | B.1.160.28 | 0.005848 |
S | 658 | N658N | aaC | aaT | 2 | 2 | B.1.177.86 | 0.000367 |
S | 658 | N658N | aaC | aaT | 2 | 2 | B.1.311 | 0.000549 |
S | 658 | N658N | aaC | aaT | 2 | 2 | B.1.595 | 0.000522 |
S | 658 | N658K | aaC | aaA | 2 | 2 | B.1.619 | 0.001742 |
S | 658 | N658N | aaC | aaT | 2 | 2 | C.26 | 0.014706 |
S | 658 | N658I | aAc | aTc | 2 | 2 | C.37 | 0.000232 |
S | 658 | N658N | aaC | aaT | 2 | 2 | C.37 | 0.000232 |
S | 658 | N658H | Aac | Cac | 2 | 2 | P.1 | 0.000032 |
S | 658 | N658N | aaC | aaT | 2 | 2 | P.1.15 | 0.000465 |
S | 658 | N658D | Aac | Gac | 2 | 2 | Q.4 | 0.00091 |
S | 658 | N658N | aaC | aaT | 2 | 2 | Q.8 | 0.00033 |
S | 658 | N658D | Aac | Gac | 1 | 1 | A | 0.000387 |
S | 658 | N658S | aAc | aGc | 1 | 1 | A.2.5 | 0.000499 |
S | 658 | N658C | AAc | TGc | 1 | 1 | All | 0 |
S | 658 | N658V | AAC | GTG | 1 | 1 | All | 0 |
S | 658 | N658del2 | AAC | R-- | 1 | 1 | All | 0 |
S | 658 | N658T | aAc | aCc | 1 | 1 | AY.100 | 0.000046 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.102 | 0.000027 |
S | 658 | N658H | Aac | Cac | 1 | 1 | AY.103 | 0.000006 |
S | 658 | N658del | AAC | --- | 1 | 1 | AY.103 | 0.000006 |
S | 658 | N658N | aaC | aaT | 1 | 1 | AY.108 | 0.001103 |
S | 658 | N658I | aAc | aTc | 1 | 1 | AY.113 | 0.000142 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.117 | 0.000085 |
S | 658 | N658N | aaC | aaT | 1 | 1 | AY.118 | 0.000063 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.118 | 0.000063 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.119 | 0.000035 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.120 | 0.000037 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.121 | 0.000135 |
S | 658 | N658S | aAc | aGc | 1 | 1 | AY.121 | 0.000135 |
S | 658 | N658N | aaC | aaT | 1 | 1 | AY.121 | 0.000135 |
S | 658 | N658T | aAc | aCc | 1 | 1 | AY.16 | 0.00038 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.16.1 | 0.00047 |
S | 658 | N658S | aAc | aGc | 1 | 1 | AY.20 | 0.000039 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.20 | 0.000039 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.23 | 0.00007 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.23 | 0.00007 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.23.1 | 0.000417 |
S | 658 | N658del1 | AaC | -aT | 1 | 1 | AY.25 | 0.000006 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.25 | 0.000006 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.26 | 0.000028 |
S | 658 | N658del | AAC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 658 | N658L | AAc | CTc | 1 | 1 | AY.3 | 0.00001 |
S | 658 | N658N | aaC | aaT | 1 | 1 | AY.38 | 0.000499 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.39 | 0.000025 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.39 | 0.000025 |
S | 658 | N658N | aaC | aaT | 1 | 1 | AY.39.1 | 0.00004 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.39.1 | 0.00004 |
S | 658 | N658S | aAc | aGc | 1 | 1 | AY.39.1 | 0.00004 |
S | 658 | N658S | aAc | aGc | 1 | 1 | AY.4 | 0.000002 |
S | 658 | N658I | aAc | aTc | 1 | 1 | AY.4 | 0.000002 |
S | 658 | N658T | aAc | aCc | 1 | 1 | AY.4 | 0.000002 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.4.4 | 0.000409 |
S | 658 | N658del1 | AAC | GG- | 1 | 1 | AY.43 | 0.000004 |
S | 658 | N658L | AAc | CTc | 1 | 1 | AY.43 | 0.000004 |
S | 658 | N658H | Aac | Cac | 1 | 1 | AY.43 | 0.000004 |
S | 658 | N658T | aAc | aCc | 1 | 1 | AY.44 | 0.000006 |
S | 658 | N658L | AAc | CTc | 1 | 1 | AY.44 | 0.000006 |
S | 658 | N658del | AAC | --- | 1 | 1 | AY.46 | 0.000104 |
S | 658 | N658del2 | AAC | R-- | 1 | 1 | AY.46.6 | 0.000072 |
S | 658 | N658K | aaC | aaA | 1 | 1 | AY.47 | 0.000031 |
S | 658 | N658S | aAc | aGc | 1 | 1 | AY.5.3 | 0.000337 |
S | 658 | N658N | aaC | aaT | 1 | 1 | AY.5.3 | 0.000337 |
S | 658 | N658N | aaC | aaT | 1 | 1 | AY.54 | 0.000095 |
S | 658 | N658S | aAc | aGc | 1 | 1 | AY.6 | 0.000041 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.61 | 0.000105 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.65 | 0.000533 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.67 | 0.000464 |
S | 658 | N658I | aAc | aTc | 1 | 1 | AY.70 | 0.000209 |
S | 658 | N658K | aaC | aaG | 1 | 1 | AY.74 | 0.000116 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | AY.75 | 0.000056 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.77 | 0.001127 |
S | 658 | N658del | AAC | --- | 1 | 1 | AY.84 | 0.000437 |
S | 658 | N658del | AAC | --- | 1 | 1 | AY.85 | 0.000427 |
S | 658 | N658L | AAc | CTc | 1 | 1 | AY.9.2 | 0.000037 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.92 | 0.000287 |
S | 658 | N658D | Aac | Gac | 1 | 1 | AY.98 | 0.000079 |
S | 658 | N658del | AAC | --- | 1 | 1 | AY.99 | 0.001049 |
S | 658 | N658S | aAc | aGc | 1 | 1 | B | 0.000128 |
S | 658 | N658del1 | Aac | -ac | 1 | 1 | B.1 | 0.000009 |
S | 658 | N658I | aAc | aTc | 1 | 1 | B.1 | 0.000009 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | B.1.1 | 0.000018 |
S | 658 | N658T | aAc | aCc | 1 | 1 | B.1.1 | 0.000018 |
S | 658 | N658del1 | AAC | GG- | 1 | 1 | B.1.1 | 0.000018 |
S | 658 | N658S | aAc | aGc | 1 | 1 | B.1.1 | 0.000018 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.1.133 | 0.008475 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | B.1.1.176 | 0.000439 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.187 | 0.00885 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.232 | 0.001815 |
S | 658 | N658T | aAc | aCc | 1 | 1 | B.1.1.26 | 0.005236 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.298 | 0.000862 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.3 | 0.008696 |
S | 658 | N658H | Aac | Cac | 1 | 1 | B.1.1.306 | 0.000438 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.310 | 0.015152 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.1.37 | 0.000193 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.410 | 0.037037 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.420 | 0.001006 |
S | 658 | N658D | Aac | Gac | 1 | 1 | B.1.1.442 | 0.018519 |
S | 658 | N658H | Aac | Cac | 1 | 1 | B.1.1.448 | 0.002033 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.1.519 | 0.00004 |
S | 658 | N658D | Aac | Gac | 1 | 1 | B.1.1.519 | 0.00004 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.1.61 | 0.008772 |
S | 658 | N658V | AAC | GTG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.128 | 0.000635 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.13 | 0.002375 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.160 | 0.000031 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | B.1.160 | 0.000031 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | B.1.177 | 0.000013 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.177 | 0.000013 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.177.16 | 0.000664 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.177.24 | 0.001295 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | B.1.177.46 | 0.000918 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.177.5 | 0.001242 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.177.54 | 0.000606 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.177.7 | 0.000165 |
S | 658 | N658D | Aac | Gac | 1 | 1 | B.1.177.73 | 0.000566 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.177.77 | 0.000726 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.190 | 0.01 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | B.1.2 | 0.000009 |
S | 658 | N658del1 | AaC | -aT | 1 | 1 | B.1.2 | 0.000009 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 658 | N658H | Aac | Cac | 1 | 1 | B.1.232 | 0.000537 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.240 | 0.000216 |
S | 658 | N658T | aAc | aCc | 1 | 1 | B.1.258 | 0.000067 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.258 | 0.000067 |
S | 658 | N658H | Aac | Cac | 1 | 1 | B.1.258.17 | 0.000104 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.258.7 | 0.001912 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.260 | 0.003344 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.340 | 0.004292 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | B.1.341 | 0.022727 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.351 | 0.00003 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.359 | 0.022727 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.36 | 0.000146 |
S | 658 | N658T | aAc | aCc | 1 | 1 | B.1.36 | 0.000146 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.36.27 | 0.000763 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.36.28 | 0.005747 |
S | 658 | N658D | Aac | Gac | 1 | 1 | B.1.36.29 | 0.000517 |
S | 658 | N658T | aAc | aCc | 1 | 1 | B.1.36.29 | 0.000517 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.380 | 0.006623 |
S | 658 | N658D | Aac | Gac | 1 | 1 | B.1.408 | 0.00369 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.408 | 0.00369 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.462 | 0.007246 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.466.2 | 0.000391 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.470 | 0.001404 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.502 | 0.052632 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.525 | 0.000113 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.526 | 0.000024 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.527 | 0.003704 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.533 | 0.009615 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.561 | 0.000397 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.564 | 0.000426 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.596 | 0.000087 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.609 | 0.000479 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 658 | N658del1 | AAC | GG- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 658 | N658L | AAc | CTc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 658 | N658C | AAc | TGc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 658 | N658K | aaC | aaA | 1 | 1 | B.1.621 | 0.000089 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.1.623 | 0.000536 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 658 | N658del | AAC | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.40 | 0.000364 |
S | 658 | N658N | aaC | aaT | 1 | 1 | B.58 | 0.010204 |
S | 658 | N658D | Aac | Gac | 1 | 1 | C.1 | 0.002392 |
S | 658 | N658K | aaC | aaA | 1 | 1 | C.14 | 0.004329 |
S | 658 | N658Y | Aac | Tac | 1 | 1 | C.35 | 0.000774 |
S | 658 | N658del | AAC | --- | 1 | 1 | C.37 | 0.000116 |
S | 658 | N658I | aAc | aTc | 1 | 1 | D.2 | 0.000075 |
S | 658 | N658N | aaC | aaT | 1 | 1 | D.2 | 0.000075 |
S | 658 | N658N | aaC | aaT | 1 | 1 | N.5 | 0.001767 |
S | 658 | N658S | aAc | aGc | 1 | 1 | P.1 | 0.000016 |
S | 658 | N658N | aaC | aaT | 1 | 1 | P.1.10 | 0.000269 |
S | 658 | N658D | Aac | Gac | 1 | 1 | P.1.12 | 0.000484 |
S | 658 | N658N | aaC | aaT | 1 | 1 | P.1.12 | 0.000484 |
S | 658 | N658del | AAC | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 658 | N658N | aaC | aaT | 1 | 1 | P.1.2 | 0.001156 |
S | 658 | N658K | aaC | aaA | 1 | 1 | P.1.4 | 0.000977 |
S | 658 | N658N | aaC | aaT | 1 | 1 | Q.4 | 0.000455 |
S | 658 | N658D | Aac | Gac | 1 | 1 | U.2 | 0.008772 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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