CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 658

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S658N658NsynaaCaaT14301430123534-23536
S658N658KnonsynaaCaaA102410040.98046923534-23536
S658N658KnonsynaaCaaG1024200.019531223534-23536
S658N658DnonsynAacGac3002980.99333323534-23536
S658N658DnonsynAaCGaT30020.0066666723534-23536
S658N658YnonsynAacTac175175123534-23536
S658N658HnonsynAacCac9595123534-23536
S658N658TnonsynaAcaCc8989123534-23536
S658N658SnonsynaAcaGc59580.98305123534-23536
S658N658SnonsynAAcTCc5910.016949223534-23536
S658N658deldelAAC---5050123534-23536
S658N658InonsynaAcaTc1414123534-23536
S658N658del1delAACGG-630.523534-23536
S658N658del1delAaC-aT620.33333323534-23536
S658N658del1delAac-ac610.16666723534-23536
S658N658LnonsynAAcCTc55123534-23536
S658N658AnonsynAACGCT22123534-23536
S658N658VnonsynAACGTG11123534-23536
S658N658del2delAACR--11123534-23536
S658N658CnonsynAAcTGc11123534-23536

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S658N658NaaCaaT14301430All0.000274
S658N658KaaCaaA10041024All0.000192
S658N658KaaCaaG201024All0.000004
S658N658KaaCaaA384384AY.1030.002384
S658N658NaaCaaT311311P.1.140.014866
S658N658DAacGac298300All0.000057
S658N658DAaCGaT2300All0
S658N658KaaCaaA252252B.1.1.70.000226
S658N658KaaCaaA185185B.1.1.2040.56231
S658N658YAacTac175175All0.000033
S658N658NaaCaaT174174B.1.20.001532
S658N658DAacGac105105B.1.177.600.022936
S658N658HAacCac9595All0.000018
S658N658TaAcaCc8989All0.000017
S658N658TaAcaCc7878B.1.1.280.024276
S658N658YAacTac7676AY.40.000118
S658N658NaaCaaT7474AY.1030.000459
S658N658NaaCaaT6565AY.40.000101
S658N658HAacCac6262AY.50.00128
S658N658SaAcaGc5859All0.000011
S658N658SAAcTCc159All0
S658N658delAAC---5050All0.00001
S658N658NaaCaaT5050B.1.5910.531915
S658N658NaaCaaT4848B.1.1.70.000043
S658N658NaaCaaT4747AY.250.000283
S658N658NaaCaaT4747B.10.00043
S658N658NaaCaaT4646B.1.10.000834
S658N658KaaCaaA4545AY.40.00007
S658N658KaaCaaA4242AY.3.10.003581
S658N658NaaCaaT4040B.1.4290.000941
S658N658NaaCaaT3636AY.200.001399
S658N658NaaCaaT2929P.10.000457
S658N658YAacTac2626AY.1030.000161
S658N658DAacGac2626B.1.617.20.000098
S658N658NaaCaaT2525B.1.4270.001262
S658N658KaaCaaA2323AY.430.000102
S658N658NaaCaaT2323B.1.617.20.000087
S658N658DAacGac2121AY.40.000033
S658N658NaaCaaT1919AY.1130.002705
S658N658YAacTac1919B.1.3510.000565
S658N658NaaCaaT1818B.1.5230.044118
S658N658NaaCaaT1717B.1.438.10.001823
S658N658SaAcaGc1717B.1.6370.001242
S658N658NaaCaaT1616B.1.1770.000211
S658N658NaaCaaT1515AY.450.001825
S658N658DAacGac1515B.1.1.4480.030488
S658N658IaAcaTc1414All0.000003
S658N658KaaCaaG1414AY.290.000221
S658N658KaaCaaA1414AY.30.000139
S658N658NaaCaaT1313AY.1200.000483
S658N658NaaCaaT1313B.1.2340.001715
S658N658NaaCaaT1313B.1.2430.000905
S658N658NaaCaaT1313B.1.5930.141304
S658N658NaaCaaT1212A.260.923077
S658N658NaaCaaT1212B.1.177.870.008734
S658N658HAacCac1212B.1.617.20.000045
S658N658HAacCac1111AY.390.000272
S658N658NaaCaaT1010AY.430.000044
S658N658NaaCaaT1010AY.440.000061
S658N658DAacGac1010B.1.1.250.005685
S658N658DAacGac1010B.1.177.810.001893
S658N658DAacGac1010B.1.4290.000235
S658N658NaaCaaT99AY.30.00009
S658N658DAacGac99B.1.2030.5625
S658N658YAacTac99B.1.2230.025
S658N658delAAC---88B.10.000073
S658N658DAacGac88B.1.10.000145
S658N658NaaCaaT88B.1.1.4320.010127
S658N658NaaCaaT88B.1.1.5190.000318
S658N658NaaCaaT88B.1.177.440.004152
S658N658NaaCaaT88B.1.2210.000568
S658N658NaaCaaT88B.1.2410.006494
S658N658SaAcaGc88B.1.4290.000188
S658N658DAacGac88P.10.000126
S658N658NaaCaaT88R.10.00072
S658N658NaaCaaT77AY.330.000467
S658N658DAacGac77B.10.000064
S658N658delAAC---77B.1.1.70.000006
S658N658NaaCaaT77B.1.5960.00061
S658N658DAacGac77B.1.6280.002467
S658N658KaaCaaA77Q.10.000884
S658N658del1AACGG-36All0.000001
S658N658del1AaC-aT26All0
S658N658del1Aac-ac16All0
S658N658SaAcaGc66AY.50.000124
S658N658YAacTac66B.1.1.2220.001224
S658N658DAacGac66B.1.1.70.000005
S658N658NaaCaaT66B.1.177.810.001136
S658N658DAacGac66B.1.20.000053
S658N658SaAcaGc66B.1.36.290.003104
S658N658NaaCaaT66B.1.4040.007812
S658N658KaaCaaA66B.1.617.20.000023
S658N658LAAcCTc55All0.000001
S658N658DAacGac55AY.1140.001156
S658N658DAacGac55AY.250.00003
S658N658NaaCaaT55AY.470.000156
S658N658NaaCaaT55B.1.1.1710.018382
S658N658DAacGac55B.1.1770.000066
S658N658NaaCaaT55B.1.258.140.004902
S658N658NaaCaaT55B.60.00455
S658N658NaaCaaT55P.20.000933
S658N658NaaCaaT44AY.290.000063
S658N658NaaCaaT44B.1.1.250.002274
S658N658SaAcaGc44B.1.1.70.000004
S658N658KaaCaaA44B.1.3150.024242
S658N658IaAcaTc44B.1.617.20.000015
S658N658delAAC---44P.10.000063
S658N658NaaCaaT33AY.100.00159
S658N658NaaCaaT33AY.1000.000138
S658N658DAacGac33AY.1030.000019
S658N658NaaCaaT33AY.1160.00086
S658N658NaaCaaT33AY.1190.000106
S658N658delAAC---33AY.250.000018
S658N658YAacTac33AY.250.000018
S658N658NaaCaaT33AY.260.000085
S658N658YAacTac33AY.290.000047
S658N658YAacTac33AY.330.0002
S658N658delAAC---33AY.430.000013
S658N658KaaCaaA33AY.440.000018
S658N658DAacGac33AY.960.006224
S658N658KaaCaaG23B.1.10.000036
S658N658KaaCaaA13B.1.10.000018
S658N658NaaCaaT33B.1.1.390.001529
S658N658SaAcaGc33B.1.1.5190.000119
S658N658IaAcaTc33B.1.1.70.000003
S658N658YAacTac33B.1.1.70.000003
S658N658NaaCaaT33B.1.1600.000094
S658N658KaaCaaA33B.1.20.000026
S658N658NaaCaaT33B.1.5260.000071
S658N658NaaCaaT33B.1.5410.013274
S658N658NaaCaaT33B.1.5610.001191
S658N658YAacTac33B.1.617.20.000011
S658N658delAAC---33B.1.617.20.000011
S658N658SaAcaGc23B.1.617.20.000008
S658N658SAAcTCc13B.1.617.20.000004
S658N658delAAC---33B.1.6210.000266
S658N658NaaCaaT33B.1.9.50.017045
S658N658delAAC---33P.1.150.000697
S658N658KaaCaaA33P.20.00056
S658N658DAaCGaT220.111111
S658N658YAacTac220.111111
S658N658AAACGCT220.111111
S658N658NaaCaaT22A0.000774
S658N658AAACGCT22All0
S658N658DAacGac22AY.1180.000125
S658N658NaaCaaT22AY.390.000049
S658N658DAacGac22AY.4.20.000043
S658N658KaaCaaA22AY.420.00008
S658N658SaAcaGc22AY.430.000009
S658N658DAacGac22AY.430.000009
S658N658YAacTac22AY.430.000009
S658N658NaaCaaT22AY.46.40.000329
S658N658NaaCaaT22AY.750.000112
S658N658KaaCaaA22AY.780.003082
S658N658NaaCaaT22AY.90.000135
S658N658NaaCaaT22B0.000256
S658N658KaaCaaG12B.10.000009
S658N658KaaCaaA12B.10.000009
S658N658KaaCaaG22B.1.1.1390.045455
S658N658NaaCaaT22B.1.1.2140.000111
S658N658YAacTac22B.1.1.3480.001592
S658N658NaaCaaT22B.1.1.4480.004065
S658N658TaAcaCc22B.1.1.70.000002
S658N658HAacCac22B.1.1.70.000002
S658N658YAacTac22B.1.1390.001466
S658N658NaaCaaT22B.1.1570.00597
S658N658DAacGac22B.1.160.280.005848
S658N658NaaCaaT22B.1.177.860.000367
S658N658NaaCaaT22B.1.3110.000549
S658N658NaaCaaT22B.1.5950.000522
S658N658KaaCaaA22B.1.6190.001742
S658N658NaaCaaT22C.260.014706
S658N658IaAcaTc22C.370.000232
S658N658NaaCaaT22C.370.000232
S658N658HAacCac22P.10.000032
S658N658NaaCaaT22P.1.150.000465
S658N658DAacGac22Q.40.00091
S658N658NaaCaaT22Q.80.00033
S658N658DAacGac11A0.000387
S658N658SaAcaGc11A.2.50.000499
S658N658CAAcTGc11All0
S658N658VAACGTG11All0
S658N658del2AACR--11All0
S658N658TaAcaCc11AY.1000.000046
S658N658DAacGac11AY.1020.000027
S658N658HAacCac11AY.1030.000006
S658N658delAAC---11AY.1030.000006
S658N658NaaCaaT11AY.1080.001103
S658N658IaAcaTc11AY.1130.000142
S658N658DAacGac11AY.1170.000085
S658N658NaaCaaT11AY.1180.000063
S658N658YAacTac11AY.1180.000063
S658N658KaaCaaA11AY.1190.000035
S658N658DAacGac11AY.1200.000037
S658N658KaaCaaA11AY.1210.000135
S658N658SaAcaGc11AY.1210.000135
S658N658NaaCaaT11AY.1210.000135
S658N658TaAcaCc11AY.160.00038
S658N658KaaCaaA11AY.16.10.00047
S658N658SaAcaGc11AY.200.000039
S658N658KaaCaaA11AY.200.000039
S658N658YAacTac11AY.230.00007
S658N658KaaCaaA11AY.230.00007
S658N658YAacTac11AY.23.10.000417
S658N658del1AaC-aT11AY.250.000006
S658N658KaaCaaA11AY.250.000006
S658N658DAacGac11AY.260.000028
S658N658delAAC---11AY.30.00001
S658N658LAAcCTc11AY.30.00001
S658N658NaaCaaT11AY.380.000499
S658N658YAacTac11AY.390.000025
S658N658DAacGac11AY.390.000025
S658N658NaaCaaT11AY.39.10.00004
S658N658YAacTac11AY.39.10.00004
S658N658SaAcaGc11AY.39.10.00004
S658N658SaAcaGc11AY.40.000002
S658N658IaAcaTc11AY.40.000002
S658N658TaAcaCc11AY.40.000002
S658N658KaaCaaA11AY.4.2.10.000149
S658N658DAacGac11AY.4.40.000409
S658N658del1AACGG-11AY.430.000004
S658N658LAAcCTc11AY.430.000004
S658N658HAacCac11AY.430.000004
S658N658TaAcaCc11AY.440.000006
S658N658LAAcCTc11AY.440.000006
S658N658delAAC---11AY.460.000104
S658N658del2AACR--11AY.46.60.000072
S658N658KaaCaaA11AY.470.000031
S658N658SaAcaGc11AY.5.30.000337
S658N658NaaCaaT11AY.5.30.000337
S658N658NaaCaaT11AY.540.000095
S658N658SaAcaGc11AY.60.000041
S658N658YAacTac11AY.610.000105
S658N658YAacTac11AY.650.000533
S658N658DAacGac11AY.670.000464
S658N658IaAcaTc11AY.700.000209
S658N658KaaCaaG11AY.740.000116
S658N658YAacTac11AY.750.000056
S658N658DAacGac11AY.770.001127
S658N658delAAC---11AY.840.000437
S658N658delAAC---11AY.850.000427
S658N658LAAcCTc11AY.9.20.000037
S658N658DAacGac11AY.920.000287
S658N658DAacGac11AY.980.000079
S658N658delAAC---11AY.990.001049
S658N658SaAcaGc11B0.000128
S658N658del1Aac-ac11B.10.000009
S658N658IaAcaTc11B.10.000009
S658N658YAacTac11B.1.10.000018
S658N658TaAcaCc11B.1.10.000018
S658N658del1AACGG-11B.1.10.000018
S658N658SaAcaGc11B.1.10.000018
S658N658delAAC---11B.1.10.000018
S658N658KaaCaaA11B.1.1.1330.008475
S658N658YAacTac11B.1.1.1760.000439
S658N658NaaCaaT11B.1.1.1870.00885
S658N658NaaCaaT11B.1.1.2320.001815
S658N658TaAcaCc11B.1.1.260.005236
S658N658NaaCaaT11B.1.1.2980.000862
S658N658NaaCaaT11B.1.1.30.008696
S658N658HAacCac11B.1.1.3060.000438
S658N658NaaCaaT11B.1.1.3100.015152
S658N658NaaCaaT11B.1.1.330.000421
S658N658KaaCaaA11B.1.1.370.000193
S658N658NaaCaaT11B.1.1.3720.000689
S658N658delAAC---11B.1.1.3720.000689
S658N658NaaCaaT11B.1.1.4100.037037
S658N658NaaCaaT11B.1.1.4200.001006
S658N658DAacGac11B.1.1.4420.018519
S658N658HAacCac11B.1.1.4480.002033
S658N658KaaCaaA11B.1.1.5190.00004
S658N658DAacGac11B.1.1.5190.00004
S658N658NaaCaaT11B.1.1.610.008772
S658N658VAACGTG11B.1.1.70.000001
S658N658NaaCaaT11B.1.1280.000635
S658N658NaaCaaT11B.1.130.002375
S658N658KaaCaaA11B.1.1600.000031
S658N658YAacTac11B.1.1600.000031
S658N658YAacTac11B.1.1770.000013
S658N658KaaCaaA11B.1.1770.000013
S658N658delAAC---11B.1.1770.000013
S658N658KaaCaaA11B.1.177.160.000664
S658N658NaaCaaT11B.1.177.240.001295
S658N658YAacTac11B.1.177.460.000918
S658N658KaaCaaA11B.1.177.50.001242
S658N658NaaCaaT11B.1.177.540.000606
S658N658NaaCaaT11B.1.177.600.000218
S658N658KaaCaaA11B.1.177.70.000165
S658N658DAacGac11B.1.177.730.000566
S658N658NaaCaaT11B.1.177.770.000726
S658N658KaaCaaA11B.1.1900.01
S658N658YAacTac11B.1.20.000009
S658N658del1AaC-aT11B.1.20.000009
S658N658delAAC---11B.1.20.000009
S658N658HAacCac11B.1.2320.000537
S658N658NaaCaaT11B.1.2400.000216
S658N658TaAcaCc11B.1.2580.000067
S658N658NaaCaaT11B.1.2580.000067
S658N658HAacCac11B.1.258.170.000104
S658N658NaaCaaT11B.1.258.70.001912
S658N658NaaCaaT11B.1.2600.003344
S658N658NaaCaaT11B.1.3400.004292
S658N658YAacTac11B.1.3410.022727
S658N658NaaCaaT11B.1.3510.00003
S658N658NaaCaaT11B.1.351.20.000303
S658N658NaaCaaT11B.1.3590.022727
S658N658NaaCaaT11B.1.360.000146
S658N658TaAcaCc11B.1.360.000146
S658N658KaaCaaA11B.1.36.270.000763
S658N658NaaCaaT11B.1.36.280.005747
S658N658DAacGac11B.1.36.290.000517
S658N658TaAcaCc11B.1.36.290.000517
S658N658NaaCaaT11B.1.3800.006623
S658N658DAacGac11B.1.4080.00369
S658N658NaaCaaT11B.1.4080.00369
S658N658KaaCaaA11B.1.4620.007246
S658N658NaaCaaT11B.1.466.20.000391
S658N658NaaCaaT11B.1.4700.001404
S658N658NaaCaaT11B.1.5020.052632
S658N658NaaCaaT11B.1.5250.000113
S658N658KaaCaaA11B.1.5260.000024
S658N658NaaCaaT11B.1.5270.003704
S658N658NaaCaaT11B.1.5330.009615
S658N658KaaCaaA11B.1.5610.000397
S658N658NaaCaaT11B.1.5640.000426
S658N658delAAC---11B.1.5960.000087
S658N658KaaCaaA11B.1.5960.000087
S658N658NaaCaaT11B.1.6090.000479
S658N658NaaCaaT11B.1.617.10.000129
S658N658del1AACGG-11B.1.617.20.000004
S658N658LAAcCTc11B.1.617.20.000004
S658N658CAAcTGc11B.1.617.20.000004
S658N658delAAC---11B.1.6200.000946
S658N658KaaCaaA11B.1.6210.000089
S658N658NaaCaaT11B.1.6230.000536
S658N658delAAC---11B.1.6270.00202
S658N658delAAC---11B.1.6380.052632
S658N658NaaCaaT11B.400.000364
S658N658NaaCaaT11B.580.010204
S658N658DAacGac11C.10.002392
S658N658KaaCaaA11C.140.004329
S658N658YAacTac11C.350.000774
S658N658delAAC---11C.370.000116
S658N658IaAcaTc11D.20.000075
S658N658NaaCaaT11D.20.000075
S658N658NaaCaaT11N.50.001767
S658N658SaAcaGc11P.10.000016
S658N658NaaCaaT11P.1.100.000269
S658N658DAacGac11P.1.120.000484
S658N658NaaCaaT11P.1.120.000484
S658N658delAAC---11P.1.130.000898
S658N658NaaCaaT11P.1.20.001156
S658N658KaaCaaA11P.1.40.000977
S658N658NaaCaaT11Q.40.000455
S658N658DAacGac11U.20.008772