CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 658

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	658	N658N		syn	aaC	aaT	1430	1430	1	23534-23536
S	658	N658K		nonsyn	aaC	aaA	1024	1004	0.980469	23534-23536
S	658	N658K		nonsyn	aaC	aaG	1024	20	0.0195312	23534-23536
S	658	N658D		nonsyn	Aac	Gac	300	298	0.993333	23534-23536
S	658	N658D		nonsyn	AaC	GaT	300	2	0.00666667	23534-23536
S	658	N658Y		nonsyn	Aac	Tac	175	175	1	23534-23536
S	658	N658H		nonsyn	Aac	Cac	95	95	1	23534-23536
S	658	N658T		nonsyn	aAc	aCc	89	89	1	23534-23536
S	658	N658S		nonsyn	aAc	aGc	59	58	0.983051	23534-23536
S	658	N658S		nonsyn	AAc	TCc	59	1	0.0169492	23534-23536
S	658	N658del		del	AAC	---	50	50	1	23534-23536
S	658	N658I		nonsyn	aAc	aTc	14	14	1	23534-23536
S	658	N658del1		del	AAC	GG-	6	3	0.5	23534-23536
S	658	N658del1		del	AaC	-aT	6	2	0.333333	23534-23536
S	658	N658del1		del	Aac	-ac	6	1	0.166667	23534-23536
S	658	N658L		nonsyn	AAc	CTc	5	5	1	23534-23536
S	658	N658A		nonsyn	AAC	GCT	2	2	1	23534-23536
S	658	N658V		nonsyn	AAC	GTG	1	1	1	23534-23536
S	658	N658del2		del	AAC	R--	1	1	1	23534-23536
S	658	N658C		nonsyn	AAc	TGc	1	1	1	23534-23536

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	658	N658N	aaC	aaT	1430	1430	All	0.000274
S	658	N658K	aaC	aaA	1004	1024	All	0.000192
S	658	N658K	aaC	aaG	20	1024	All	0.000004
S	658	N658K	aaC	aaA	384	384	AY.103	0.002384
S	658	N658N	aaC	aaT	311	311	P.1.14	0.014866
S	658	N658D	Aac	Gac	298	300	All	0.000057
S	658	N658D	AaC	GaT	2	300	All	0
S	658	N658K	aaC	aaA	252	252	B.1.1.7	0.000226
S	658	N658K	aaC	aaA	185	185	B.1.1.204	0.56231
S	658	N658Y	Aac	Tac	175	175	All	0.000033
S	658	N658N	aaC	aaT	174	174	B.1.2	0.001532
S	658	N658D	Aac	Gac	105	105	B.1.177.60	0.022936
S	658	N658H	Aac	Cac	95	95	All	0.000018
S	658	N658T	aAc	aCc	89	89	All	0.000017
S	658	N658T	aAc	aCc	78	78	B.1.1.28	0.024276
S	658	N658Y	Aac	Tac	76	76	AY.4	0.000118
S	658	N658N	aaC	aaT	74	74	AY.103	0.000459
S	658	N658N	aaC	aaT	65	65	AY.4	0.000101
S	658	N658H	Aac	Cac	62	62	AY.5	0.00128
S	658	N658S	aAc	aGc	58	59	All	0.000011
S	658	N658S	AAc	TCc	1	59	All	0
S	658	N658del	AAC	---	50	50	All	0.00001
S	658	N658N	aaC	aaT	50	50	B.1.591	0.531915
S	658	N658N	aaC	aaT	48	48	B.1.1.7	0.000043
S	658	N658N	aaC	aaT	47	47	AY.25	0.000283
S	658	N658N	aaC	aaT	47	47	B.1	0.00043
S	658	N658N	aaC	aaT	46	46	B.1.1	0.000834
S	658	N658K	aaC	aaA	45	45	AY.4	0.00007
S	658	N658K	aaC	aaA	42	42	AY.3.1	0.003581
S	658	N658N	aaC	aaT	40	40	B.1.429	0.000941
S	658	N658N	aaC	aaT	36	36	AY.20	0.001399
S	658	N658N	aaC	aaT	29	29	P.1	0.000457
S	658	N658Y	Aac	Tac	26	26	AY.103	0.000161
S	658	N658D	Aac	Gac	26	26	B.1.617.2	0.000098
S	658	N658N	aaC	aaT	25	25	B.1.427	0.001262
S	658	N658K	aaC	aaA	23	23	AY.43	0.000102
S	658	N658N	aaC	aaT	23	23	B.1.617.2	0.000087
S	658	N658D	Aac	Gac	21	21	AY.4	0.000033
S	658	N658N	aaC	aaT	19	19	AY.113	0.002705
S	658	N658Y	Aac	Tac	19	19	B.1.351	0.000565
S	658	N658N	aaC	aaT	18	18	B.1.523	0.044118
S	658	N658N	aaC	aaT	17	17	B.1.438.1	0.001823
S	658	N658S	aAc	aGc	17	17	B.1.637	0.001242
S	658	N658N	aaC	aaT	16	16	B.1.177	0.000211
S	658	N658N	aaC	aaT	15	15	AY.45	0.001825
S	658	N658D	Aac	Gac	15	15	B.1.1.448	0.030488
S	658	N658I	aAc	aTc	14	14	All	0.000003
S	658	N658K	aaC	aaG	14	14	AY.29	0.000221
S	658	N658K	aaC	aaA	14	14	AY.3	0.000139
S	658	N658N	aaC	aaT	13	13	AY.120	0.000483
S	658	N658N	aaC	aaT	13	13	B.1.234	0.001715
S	658	N658N	aaC	aaT	13	13	B.1.243	0.000905
S	658	N658N	aaC	aaT	13	13	B.1.593	0.141304
S	658	N658N	aaC	aaT	12	12	A.26	0.923077
S	658	N658N	aaC	aaT	12	12	B.1.177.87	0.008734
S	658	N658H	Aac	Cac	12	12	B.1.617.2	0.000045
S	658	N658H	Aac	Cac	11	11	AY.39	0.000272
S	658	N658N	aaC	aaT	10	10	AY.43	0.000044
S	658	N658N	aaC	aaT	10	10	AY.44	0.000061
S	658	N658D	Aac	Gac	10	10	B.1.1.25	0.005685
S	658	N658D	Aac	Gac	10	10	B.1.177.81	0.001893
S	658	N658D	Aac	Gac	10	10	B.1.429	0.000235
S	658	N658N	aaC	aaT	9	9	AY.3	0.00009
S	658	N658D	Aac	Gac	9	9	B.1.203	0.5625
S	658	N658Y	Aac	Tac	9	9	B.1.223	0.025
S	658	N658del	AAC	---	8	8	B.1	0.000073
S	658	N658D	Aac	Gac	8	8	B.1.1	0.000145
S	658	N658N	aaC	aaT	8	8	B.1.1.432	0.010127
S	658	N658N	aaC	aaT	8	8	B.1.1.519	0.000318
S	658	N658N	aaC	aaT	8	8	B.1.177.44	0.004152
S	658	N658N	aaC	aaT	8	8	B.1.221	0.000568
S	658	N658N	aaC	aaT	8	8	B.1.241	0.006494
S	658	N658S	aAc	aGc	8	8	B.1.429	0.000188
S	658	N658D	Aac	Gac	8	8	P.1	0.000126
S	658	N658N	aaC	aaT	8	8	R.1	0.00072
S	658	N658N	aaC	aaT	7	7	AY.33	0.000467
S	658	N658D	Aac	Gac	7	7	B.1	0.000064
S	658	N658del	AAC	---	7	7	B.1.1.7	0.000006
S	658	N658N	aaC	aaT	7	7	B.1.596	0.00061
S	658	N658D	Aac	Gac	7	7	B.1.628	0.002467
S	658	N658K	aaC	aaA	7	7	Q.1	0.000884
S	658	N658del1	AAC	GG-	3	6	All	0.000001
S	658	N658del1	AaC	-aT	2	6	All	0
S	658	N658del1	Aac	-ac	1	6	All	0
S	658	N658S	aAc	aGc	6	6	AY.5	0.000124
S	658	N658Y	Aac	Tac	6	6	B.1.1.222	0.001224
S	658	N658D	Aac	Gac	6	6	B.1.1.7	0.000005
S	658	N658N	aaC	aaT	6	6	B.1.177.81	0.001136
S	658	N658D	Aac	Gac	6	6	B.1.2	0.000053
S	658	N658S	aAc	aGc	6	6	B.1.36.29	0.003104
S	658	N658N	aaC	aaT	6	6	B.1.404	0.007812
S	658	N658K	aaC	aaA	6	6	B.1.617.2	0.000023
S	658	N658L	AAc	CTc	5	5	All	0.000001
S	658	N658D	Aac	Gac	5	5	AY.114	0.001156
S	658	N658D	Aac	Gac	5	5	AY.25	0.00003
S	658	N658N	aaC	aaT	5	5	AY.47	0.000156
S	658	N658N	aaC	aaT	5	5	B.1.1.171	0.018382
S	658	N658D	Aac	Gac	5	5	B.1.177	0.000066
S	658	N658N	aaC	aaT	5	5	B.1.258.14	0.004902
S	658	N658N	aaC	aaT	5	5	B.6	0.00455
S	658	N658N	aaC	aaT	5	5	P.2	0.000933
S	658	N658N	aaC	aaT	4	4	AY.29	0.000063
S	658	N658N	aaC	aaT	4	4	B.1.1.25	0.002274
S	658	N658S	aAc	aGc	4	4	B.1.1.7	0.000004
S	658	N658K	aaC	aaA	4	4	B.1.315	0.024242
S	658	N658I	aAc	aTc	4	4	B.1.617.2	0.000015
S	658	N658del	AAC	---	4	4	P.1	0.000063
S	658	N658N	aaC	aaT	3	3	AY.10	0.00159
S	658	N658N	aaC	aaT	3	3	AY.100	0.000138
S	658	N658D	Aac	Gac	3	3	AY.103	0.000019
S	658	N658N	aaC	aaT	3	3	AY.116	0.00086
S	658	N658N	aaC	aaT	3	3	AY.119	0.000106
S	658	N658del	AAC	---	3	3	AY.25	0.000018
S	658	N658Y	Aac	Tac	3	3	AY.25	0.000018
S	658	N658N	aaC	aaT	3	3	AY.26	0.000085
S	658	N658Y	Aac	Tac	3	3	AY.29	0.000047
S	658	N658Y	Aac	Tac	3	3	AY.33	0.0002
S	658	N658del	AAC	---	3	3	AY.43	0.000013
S	658	N658K	aaC	aaA	3	3	AY.44	0.000018
S	658	N658D	Aac	Gac	3	3	AY.96	0.006224
S	658	N658K	aaC	aaG	2	3	B.1.1	0.000036
S	658	N658K	aaC	aaA	1	3	B.1.1	0.000018
S	658	N658N	aaC	aaT	3	3	B.1.1.39	0.001529
S	658	N658S	aAc	aGc	3	3	B.1.1.519	0.000119
S	658	N658I	aAc	aTc	3	3	B.1.1.7	0.000003
S	658	N658Y	Aac	Tac	3	3	B.1.1.7	0.000003
S	658	N658N	aaC	aaT	3	3	B.1.160	0.000094
S	658	N658K	aaC	aaA	3	3	B.1.2	0.000026
S	658	N658N	aaC	aaT	3	3	B.1.526	0.000071
S	658	N658N	aaC	aaT	3	3	B.1.541	0.013274
S	658	N658N	aaC	aaT	3	3	B.1.561	0.001191
S	658	N658Y	Aac	Tac	3	3	B.1.617.2	0.000011
S	658	N658del	AAC	---	3	3	B.1.617.2	0.000011
S	658	N658S	aAc	aGc	2	3	B.1.617.2	0.000008
S	658	N658S	AAc	TCc	1	3	B.1.617.2	0.000004
S	658	N658del	AAC	---	3	3	B.1.621	0.000266
S	658	N658N	aaC	aaT	3	3	B.1.9.5	0.017045
S	658	N658del	AAC	---	3	3	P.1.15	0.000697
S	658	N658K	aaC	aaA	3	3	P.2	0.00056
S	658	N658D	AaC	GaT	2	2		0.111111
S	658	N658Y	Aac	Tac	2	2		0.111111
S	658	N658A	AAC	GCT	2	2		0.111111
S	658	N658N	aaC	aaT	2	2	A	0.000774
S	658	N658A	AAC	GCT	2	2	All	0
S	658	N658D	Aac	Gac	2	2	AY.118	0.000125
S	658	N658N	aaC	aaT	2	2	AY.39	0.000049
S	658	N658D	Aac	Gac	2	2	AY.4.2	0.000043
S	658	N658K	aaC	aaA	2	2	AY.42	0.00008
S	658	N658S	aAc	aGc	2	2	AY.43	0.000009
S	658	N658D	Aac	Gac	2	2	AY.43	0.000009
S	658	N658Y	Aac	Tac	2	2	AY.43	0.000009
S	658	N658N	aaC	aaT	2	2	AY.46.4	0.000329
S	658	N658N	aaC	aaT	2	2	AY.75	0.000112
S	658	N658K	aaC	aaA	2	2	AY.78	0.003082
S	658	N658N	aaC	aaT	2	2	AY.9	0.000135
S	658	N658N	aaC	aaT	2	2	B	0.000256
S	658	N658K	aaC	aaG	1	2	B.1	0.000009
S	658	N658K	aaC	aaA	1	2	B.1	0.000009
S	658	N658K	aaC	aaG	2	2	B.1.1.139	0.045455
S	658	N658N	aaC	aaT	2	2	B.1.1.214	0.000111
S	658	N658Y	Aac	Tac	2	2	B.1.1.348	0.001592
S	658	N658N	aaC	aaT	2	2	B.1.1.448	0.004065
S	658	N658T	aAc	aCc	2	2	B.1.1.7	0.000002
S	658	N658H	Aac	Cac	2	2	B.1.1.7	0.000002
S	658	N658Y	Aac	Tac	2	2	B.1.139	0.001466
S	658	N658N	aaC	aaT	2	2	B.1.157	0.00597
S	658	N658D	Aac	Gac	2	2	B.1.160.28	0.005848
S	658	N658N	aaC	aaT	2	2	B.1.177.86	0.000367
S	658	N658N	aaC	aaT	2	2	B.1.311	0.000549
S	658	N658N	aaC	aaT	2	2	B.1.595	0.000522
S	658	N658K	aaC	aaA	2	2	B.1.619	0.001742
S	658	N658N	aaC	aaT	2	2	C.26	0.014706
S	658	N658I	aAc	aTc	2	2	C.37	0.000232
S	658	N658N	aaC	aaT	2	2	C.37	0.000232
S	658	N658H	Aac	Cac	2	2	P.1	0.000032
S	658	N658N	aaC	aaT	2	2	P.1.15	0.000465
S	658	N658D	Aac	Gac	2	2	Q.4	0.00091
S	658	N658N	aaC	aaT	2	2	Q.8	0.00033
S	658	N658D	Aac	Gac	1	1	A	0.000387
S	658	N658S	aAc	aGc	1	1	A.2.5	0.000499
S	658	N658C	AAc	TGc	1	1	All	0
S	658	N658V	AAC	GTG	1	1	All	0
S	658	N658del2	AAC	R--	1	1	All	0
S	658	N658T	aAc	aCc	1	1	AY.100	0.000046
S	658	N658D	Aac	Gac	1	1	AY.102	0.000027
S	658	N658H	Aac	Cac	1	1	AY.103	0.000006
S	658	N658del	AAC	---	1	1	AY.103	0.000006
S	658	N658N	aaC	aaT	1	1	AY.108	0.001103
S	658	N658I	aAc	aTc	1	1	AY.113	0.000142
S	658	N658D	Aac	Gac	1	1	AY.117	0.000085
S	658	N658N	aaC	aaT	1	1	AY.118	0.000063
S	658	N658Y	Aac	Tac	1	1	AY.118	0.000063
S	658	N658K	aaC	aaA	1	1	AY.119	0.000035
S	658	N658D	Aac	Gac	1	1	AY.120	0.000037
S	658	N658K	aaC	aaA	1	1	AY.121	0.000135
S	658	N658S	aAc	aGc	1	1	AY.121	0.000135
S	658	N658N	aaC	aaT	1	1	AY.121	0.000135
S	658	N658T	aAc	aCc	1	1	AY.16	0.00038
S	658	N658K	aaC	aaA	1	1	AY.16.1	0.00047
S	658	N658S	aAc	aGc	1	1	AY.20	0.000039
S	658	N658K	aaC	aaA	1	1	AY.20	0.000039
S	658	N658Y	Aac	Tac	1	1	AY.23	0.00007
S	658	N658K	aaC	aaA	1	1	AY.23	0.00007
S	658	N658Y	Aac	Tac	1	1	AY.23.1	0.000417
S	658	N658del1	AaC	-aT	1	1	AY.25	0.000006
S	658	N658K	aaC	aaA	1	1	AY.25	0.000006
S	658	N658D	Aac	Gac	1	1	AY.26	0.000028
S	658	N658del	AAC	---	1	1	AY.3	0.00001
S	658	N658L	AAc	CTc	1	1	AY.3	0.00001
S	658	N658N	aaC	aaT	1	1	AY.38	0.000499
S	658	N658Y	Aac	Tac	1	1	AY.39	0.000025
S	658	N658D	Aac	Gac	1	1	AY.39	0.000025
S	658	N658N	aaC	aaT	1	1	AY.39.1	0.00004
S	658	N658Y	Aac	Tac	1	1	AY.39.1	0.00004
S	658	N658S	aAc	aGc	1	1	AY.39.1	0.00004
S	658	N658S	aAc	aGc	1	1	AY.4	0.000002
S	658	N658I	aAc	aTc	1	1	AY.4	0.000002
S	658	N658T	aAc	aCc	1	1	AY.4	0.000002
S	658	N658K	aaC	aaA	1	1	AY.4.2.1	0.000149
S	658	N658D	Aac	Gac	1	1	AY.4.4	0.000409
S	658	N658del1	AAC	GG-	1	1	AY.43	0.000004
S	658	N658L	AAc	CTc	1	1	AY.43	0.000004
S	658	N658H	Aac	Cac	1	1	AY.43	0.000004
S	658	N658T	aAc	aCc	1	1	AY.44	0.000006
S	658	N658L	AAc	CTc	1	1	AY.44	0.000006
S	658	N658del	AAC	---	1	1	AY.46	0.000104
S	658	N658del2	AAC	R--	1	1	AY.46.6	0.000072
S	658	N658K	aaC	aaA	1	1	AY.47	0.000031
S	658	N658S	aAc	aGc	1	1	AY.5.3	0.000337
S	658	N658N	aaC	aaT	1	1	AY.5.3	0.000337
S	658	N658N	aaC	aaT	1	1	AY.54	0.000095
S	658	N658S	aAc	aGc	1	1	AY.6	0.000041
S	658	N658Y	Aac	Tac	1	1	AY.61	0.000105
S	658	N658Y	Aac	Tac	1	1	AY.65	0.000533
S	658	N658D	Aac	Gac	1	1	AY.67	0.000464
S	658	N658I	aAc	aTc	1	1	AY.70	0.000209
S	658	N658K	aaC	aaG	1	1	AY.74	0.000116
S	658	N658Y	Aac	Tac	1	1	AY.75	0.000056
S	658	N658D	Aac	Gac	1	1	AY.77	0.001127
S	658	N658del	AAC	---	1	1	AY.84	0.000437
S	658	N658del	AAC	---	1	1	AY.85	0.000427
S	658	N658L	AAc	CTc	1	1	AY.9.2	0.000037
S	658	N658D	Aac	Gac	1	1	AY.92	0.000287
S	658	N658D	Aac	Gac	1	1	AY.98	0.000079
S	658	N658del	AAC	---	1	1	AY.99	0.001049
S	658	N658S	aAc	aGc	1	1	B	0.000128
S	658	N658del1	Aac	-ac	1	1	B.1	0.000009
S	658	N658I	aAc	aTc	1	1	B.1	0.000009
S	658	N658Y	Aac	Tac	1	1	B.1.1	0.000018
S	658	N658T	aAc	aCc	1	1	B.1.1	0.000018
S	658	N658del1	AAC	GG-	1	1	B.1.1	0.000018
S	658	N658S	aAc	aGc	1	1	B.1.1	0.000018
S	658	N658del	AAC	---	1	1	B.1.1	0.000018
S	658	N658K	aaC	aaA	1	1	B.1.1.133	0.008475
S	658	N658Y	Aac	Tac	1	1	B.1.1.176	0.000439
S	658	N658N	aaC	aaT	1	1	B.1.1.187	0.00885
S	658	N658N	aaC	aaT	1	1	B.1.1.232	0.001815
S	658	N658T	aAc	aCc	1	1	B.1.1.26	0.005236
S	658	N658N	aaC	aaT	1	1	B.1.1.298	0.000862
S	658	N658N	aaC	aaT	1	1	B.1.1.3	0.008696
S	658	N658H	Aac	Cac	1	1	B.1.1.306	0.000438
S	658	N658N	aaC	aaT	1	1	B.1.1.310	0.015152
S	658	N658N	aaC	aaT	1	1	B.1.1.33	0.000421
S	658	N658K	aaC	aaA	1	1	B.1.1.37	0.000193
S	658	N658N	aaC	aaT	1	1	B.1.1.372	0.000689
S	658	N658del	AAC	---	1	1	B.1.1.372	0.000689
S	658	N658N	aaC	aaT	1	1	B.1.1.410	0.037037
S	658	N658N	aaC	aaT	1	1	B.1.1.420	0.001006
S	658	N658D	Aac	Gac	1	1	B.1.1.442	0.018519
S	658	N658H	Aac	Cac	1	1	B.1.1.448	0.002033
S	658	N658K	aaC	aaA	1	1	B.1.1.519	0.00004
S	658	N658D	Aac	Gac	1	1	B.1.1.519	0.00004
S	658	N658N	aaC	aaT	1	1	B.1.1.61	0.008772
S	658	N658V	AAC	GTG	1	1	B.1.1.7	0.000001
S	658	N658N	aaC	aaT	1	1	B.1.128	0.000635
S	658	N658N	aaC	aaT	1	1	B.1.13	0.002375
S	658	N658K	aaC	aaA	1	1	B.1.160	0.000031
S	658	N658Y	Aac	Tac	1	1	B.1.160	0.000031
S	658	N658Y	Aac	Tac	1	1	B.1.177	0.000013
S	658	N658K	aaC	aaA	1	1	B.1.177	0.000013
S	658	N658del	AAC	---	1	1	B.1.177	0.000013
S	658	N658K	aaC	aaA	1	1	B.1.177.16	0.000664
S	658	N658N	aaC	aaT	1	1	B.1.177.24	0.001295
S	658	N658Y	Aac	Tac	1	1	B.1.177.46	0.000918
S	658	N658K	aaC	aaA	1	1	B.1.177.5	0.001242
S	658	N658N	aaC	aaT	1	1	B.1.177.54	0.000606
S	658	N658N	aaC	aaT	1	1	B.1.177.60	0.000218
S	658	N658K	aaC	aaA	1	1	B.1.177.7	0.000165
S	658	N658D	Aac	Gac	1	1	B.1.177.73	0.000566
S	658	N658N	aaC	aaT	1	1	B.1.177.77	0.000726
S	658	N658K	aaC	aaA	1	1	B.1.190	0.01
S	658	N658Y	Aac	Tac	1	1	B.1.2	0.000009
S	658	N658del1	AaC	-aT	1	1	B.1.2	0.000009
S	658	N658del	AAC	---	1	1	B.1.2	0.000009
S	658	N658H	Aac	Cac	1	1	B.1.232	0.000537
S	658	N658N	aaC	aaT	1	1	B.1.240	0.000216
S	658	N658T	aAc	aCc	1	1	B.1.258	0.000067
S	658	N658N	aaC	aaT	1	1	B.1.258	0.000067
S	658	N658H	Aac	Cac	1	1	B.1.258.17	0.000104
S	658	N658N	aaC	aaT	1	1	B.1.258.7	0.001912
S	658	N658N	aaC	aaT	1	1	B.1.260	0.003344
S	658	N658N	aaC	aaT	1	1	B.1.340	0.004292
S	658	N658Y	Aac	Tac	1	1	B.1.341	0.022727
S	658	N658N	aaC	aaT	1	1	B.1.351	0.00003
S	658	N658N	aaC	aaT	1	1	B.1.351.2	0.000303
S	658	N658N	aaC	aaT	1	1	B.1.359	0.022727
S	658	N658N	aaC	aaT	1	1	B.1.36	0.000146
S	658	N658T	aAc	aCc	1	1	B.1.36	0.000146
S	658	N658K	aaC	aaA	1	1	B.1.36.27	0.000763
S	658	N658N	aaC	aaT	1	1	B.1.36.28	0.005747
S	658	N658D	Aac	Gac	1	1	B.1.36.29	0.000517
S	658	N658T	aAc	aCc	1	1	B.1.36.29	0.000517
S	658	N658N	aaC	aaT	1	1	B.1.380	0.006623
S	658	N658D	Aac	Gac	1	1	B.1.408	0.00369
S	658	N658N	aaC	aaT	1	1	B.1.408	0.00369
S	658	N658K	aaC	aaA	1	1	B.1.462	0.007246
S	658	N658N	aaC	aaT	1	1	B.1.466.2	0.000391
S	658	N658N	aaC	aaT	1	1	B.1.470	0.001404
S	658	N658N	aaC	aaT	1	1	B.1.502	0.052632
S	658	N658N	aaC	aaT	1	1	B.1.525	0.000113
S	658	N658K	aaC	aaA	1	1	B.1.526	0.000024
S	658	N658N	aaC	aaT	1	1	B.1.527	0.003704
S	658	N658N	aaC	aaT	1	1	B.1.533	0.009615
S	658	N658K	aaC	aaA	1	1	B.1.561	0.000397
S	658	N658N	aaC	aaT	1	1	B.1.564	0.000426
S	658	N658del	AAC	---	1	1	B.1.596	0.000087
S	658	N658K	aaC	aaA	1	1	B.1.596	0.000087
S	658	N658N	aaC	aaT	1	1	B.1.609	0.000479
S	658	N658N	aaC	aaT	1	1	B.1.617.1	0.000129
S	658	N658del1	AAC	GG-	1	1	B.1.617.2	0.000004
S	658	N658L	AAc	CTc	1	1	B.1.617.2	0.000004
S	658	N658C	AAc	TGc	1	1	B.1.617.2	0.000004
S	658	N658del	AAC	---	1	1	B.1.620	0.000946
S	658	N658K	aaC	aaA	1	1	B.1.621	0.000089
S	658	N658N	aaC	aaT	1	1	B.1.623	0.000536
S	658	N658del	AAC	---	1	1	B.1.627	0.00202
S	658	N658del	AAC	---	1	1	B.1.638	0.052632
S	658	N658N	aaC	aaT	1	1	B.40	0.000364
S	658	N658N	aaC	aaT	1	1	B.58	0.010204
S	658	N658D	Aac	Gac	1	1	C.1	0.002392
S	658	N658K	aaC	aaA	1	1	C.14	0.004329
S	658	N658Y	Aac	Tac	1	1	C.35	0.000774
S	658	N658del	AAC	---	1	1	C.37	0.000116
S	658	N658I	aAc	aTc	1	1	D.2	0.000075
S	658	N658N	aaC	aaT	1	1	D.2	0.000075
S	658	N658N	aaC	aaT	1	1	N.5	0.001767
S	658	N658S	aAc	aGc	1	1	P.1	0.000016
S	658	N658N	aaC	aaT	1	1	P.1.10	0.000269
S	658	N658D	Aac	Gac	1	1	P.1.12	0.000484
S	658	N658N	aaC	aaT	1	1	P.1.12	0.000484
S	658	N658del	AAC	---	1	1	P.1.13	0.000898
S	658	N658N	aaC	aaT	1	1	P.1.2	0.001156
S	658	N658K	aaC	aaA	1	1	P.1.4	0.000977
S	658	N658N	aaC	aaT	1	1	Q.4	0.000455
S	658	N658D	Aac	Gac	1	1	U.2	0.008772

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.