CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 65

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S65F65FsynttCttT16311631121755-21757
S65F65deldelTTC---11351135121755-21757
S65F65LnonsynTtcCtc123740.60162621755-21757
S65F65LnonsynttCttA123380.30894321755-21757
S65F65LnonsynttCttG12370.056910621755-21757
S65F65LnonsynTtCCtT12330.024390221755-21757
S65F65LnonsynTtCCtG12310.0081300821755-21757
S65F65SnonsyntTctCc50490.9821755-21757
S65F65SnonsyntTCtCG5010.0221755-21757
S65F65CnonsyntTctGc22180.81818221755-21757
S65F65CnonsyntTCtGT2240.18181821755-21757
S65F65YnonsyntTctAc20170.8521755-21757
S65F65YnonsyntTCtAT2030.1521755-21757
S65F65VnonsynTtcGtc19160.84210521755-21757
S65F65VnonsynTtCGtT1920.10526321755-21757
S65F65VnonsynTtCGtG1910.052631621755-21757
S65F65RnonsynTTcCGc1480.57142921755-21757
S65F65RnonsynTTCCGT1440.28571421755-21757
S65F65RnonsynTTCAGG1420.14285721755-21757
S65F65HnonsynTTcCAc1050.521755-21757
S65F65HnonsynTTCCAT1050.521755-21757
S65F65InonsynTtcAtc870.87521755-21757
S65F65del1delttCtt-840.521755-21757
S65F65del1delTtc-tc820.2521755-21757
S65F65InonsynTtCAtT810.12521755-21757
S65F65del1deltTCtC-810.12521755-21757
S65F65del1delTtC-tN810.12521755-21757
S65F65AnonsynTTcGCc630.521755-21757
S65F65AnonsynTTCGCT620.33333321755-21757
S65F65AnonsynTTCGCG610.16666721755-21757
S65F65GnonsynTTCGGT420.521755-21757
S65F65PnonsynTTcCCc420.521755-21757
S65F65del2delTTC--N420.521755-21757
S65F65PnonsynTTCCCT420.521755-21757
S65F65DnonsynTTcGAc420.521755-21757
S65F65DnonsynTTCGAT420.521755-21757
S65F65GnonsynTTcGGc420.521755-21757
S65F65del2deltTCt--410.2521755-21757
S65F65del2delTTc--c410.2521755-21757
S65F65XnonsyntTCtAG11121755-21757
S65F65EnonsynTTCGAA11121755-21757

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S65F65FttCttT16311631All0.000312
S65F65delTTC---11351135All0.000217
S65F65FttCttT10811081B.1.1.3161
S65F65delTTC---283283C.370.032846
S65F65LTtcCtc74123All0.000014
S65F65LttCttA38123All0.000007
S65F65LttCttG7123All0.000001
S65F65LTtCCtT3123All0.000001
S65F65LTtCCtG1123All0
S65F65delTTC---108108AY.430.000478
S65F65delTTC---8282B.1.1.70.000073
S65F65delTTC---7979B.1.617.20.000297
S65F65FttCttT6969R.21
S65F65delTTC---6262AY.40.000096
S65F65FttCttT5757B.1.1.70.000051
S65F65FttCttT5454B.10.000495
S65F65StTctCc4950All0.000009
S65F65StTCtCG150All0
S65F65delTTC---4848AY.440.000292
S65F65delTTC---4141AY.250.000247
S65F65FttCttT3838AY.250.000229
S65F65FttCttT3636B.1.617.20.000136
S65F65delTTC---3535AY.90.002366
S65F65FttCttT2929AY.40.000045
S65F65FttCttT2727AY.430.00012
S65F65FttCttT2424B.1.3780.164384
S65F65CtTctGc1822All0.000003
S65F65CtTCtGT422All0.000001
S65F65YtTctAc1720All0.000003
S65F65YtTCtAT320All0.000001
S65F65delTTC---2020AY.1030.000124
S65F65VTtcGtc1619All0.000003
S65F65VTtCGtT219All0
S65F65VTtCGtG119All0
S65F65delTTC---1919AY.30.000189
S65F65LTtcCtc1419AY.40.000022
S65F65LttCttA519AY.40.000008
S65F65delTTC---1717AY.1020.000451
S65F65LTtcCtc1417AY.30.000139
S65F65LttCttG217AY.30.00002
S65F65LTtCCtG117AY.30.00001
S65F65StTctCc1717AY.40.000026
S65F65LttCttA1317B.1.1.70.000012
S65F65LTtcCtc417B.1.1.70.000004
S65F65FttCttT1616AY.1030.000099
S65F65FttCttT1616P.10.000252
S65F65delTTC---1515B.1.10.000272
S65F65FttCttT1515B.1.5250.001697
S65F65RTTcCGc814All0.000002
S65F65RTTCCGT414All0.000001
S65F65RTTCAGG214All0
S65F65FttCttT1313AY.120.004109
S65F65delTTC---1313AY.50.000268
S65F65delTTC---1313B.1.1770.000171
S65F65delTTC---1212AY.34.10.006119
S65F65FttCttT1212B.1.10.000218
S65F65FttCttT1111B.1.4290.000259
S65F65HTTcCAc510All0.000001
S65F65HTTCCAT510All0.000001
S65F65delTTC---1010AY.260.000283
S65F65LTtcCtc710P.10.00011
S65F65LTtCCtT310P.10.000047
S65F65delTTC---99AY.4.50.000967
S65F65delTTC---99B.1.4290.000212
S65F65ITtcAtc78All0.000001
S65F65del1ttCtt-48All0.000001
S65F65del1Ttc-tc28All0
S65F65ITtCAtT18All0
S65F65del1tTCtC-18All0
S65F65del1TtC-tN18All0
S65F65delTTC---88AY.420.000322
S65F65FttCttT88AY.440.000049
S65F65delTTC---88AY.470.000249
S65F65delTTC---88AY.980.000632
S65F65LttCttA58B.10.000046
S65F65LTtcCtc28B.10.000018
S65F65LttCttG18B.10.000009
S65F65delTTC---88B.1.177.860.001468
S65F65LTtcCtc68B.1.617.20.000023
S65F65LttCttA28B.1.617.20.000008
S65F65delTTC---77AY.1010.003433
S65F65delTTC---77AY.460.000729
S65F65delTTC---77B.10.000064
S65F65FttCttT77B.1.3510.000208
S65F65RTTcCGc57P.10.000079
S65F65CtTctGc57P.10.000079
S65F65CtTCtGT27P.10.000032
S65F65RTTCCGT27P.10.000032
S65F65ATTcGCc36All0.000001
S65F65ATTCGCT26All0
S65F65ATTCGCG16All0
S65F65delTTC---66AY.1000.000276
S65F65delTTC---66AY.1210.000812
S65F65delTTC---66AY.450.00073
S65F65FttCttT66AY.60.000247
S65F65FttCttT66AY.98.10.000291
S65F65FttCttT66B.1.1.1170.058252
S65F65delTTC---66P.10.000095
S65F65HTTcCAc36P.10.000047
S65F65YtTCtAT36P.10.000047
S65F65HTTCCAT36P.10.000047
S65F65YtTctAc36P.10.000047
S65F65delTTC---55AY.330.000334
S65F65delTTC---55AY.850.002136
S65F65delTTC---55AY.9.20.000184
S65F65LTtcCtc55B.1.1770.000066
S65F65delTTC---55B.1.20.000044
S65F65FttCttT55B.1.5770.003436
S65F65delTTC---440.222222
S65F65PTTCCCT24All0
S65F65GTTcGGc24All0
S65F65PTTcCCc24All0
S65F65DTTCGAT24All0
S65F65DTTcGAc24All0
S65F65del2TTC--N24All0
S65F65GTTCGGT24All0
S65F65del2tTCt--14All0
S65F65del2TTc--c14All0
S65F65FttCttT44AY.1130.00057
S65F65delTTC---44AY.1190.000141
S65F65delTTC---44AY.200.000155
S65F65delTTC---44AY.390.000099
S65F65LTtcCtc34AY.440.000018
S65F65LttCttA14AY.440.000006
S65F65FttCttT44AY.470.000124
S65F65delTTC---44AY.610.000419
S65F65delTTC---44AY.99.20.000369
S65F65delTTC---44B.1.1080.023256
S65F65delTTC---44B.1.1600.000125
S65F65FttCttT44B.1.1770.000053
S65F65FttCttT44B.1.20.000035
S65F65delTTC---44B.1.2210.000284
S65F65LttCttA34B.1.2580.0002
S65F65LTtcCtc14B.1.2580.000067
S65F65FttCttT33AY.1060.001005
S65F65delTTC---33AY.1130.000427
S65F65delTTC---33AY.1180.000188
S65F65FttCttT33AY.1180.000188
S65F65delTTC---33AY.120.000948
S65F65delTTC---33AY.1200.000112
S65F65FttCttT33AY.1210.000406
S65F65FttCttT33AY.290.000047
S65F65FttCttT33AY.30.00003
S65F65delTTC---33AY.380.001498
S65F65delTTC---33AY.39.10.000119
S65F65CtTctGc23AY.40.000003
S65F65CtTCtGT13AY.40.000002
S65F65delTTC---33AY.750.000168
S65F65delTTC---33AY.75.10.000541
S65F65delTTC---33AY.9.10.000251
S65F65delTTC---33AY.98.10.000145
S65F65VTtcGtc23B.1.1.330.000842
S65F65VTtCGtG13B.1.1.330.000421
S65F65YtTctAc33B.1.1.70.000003
S65F65delTTC---33B.1.5250.000339
S65F65FttCttT22A.280.005291
S65F65delTTC---22AY.1080.002205
S65F65delTTC---22AY.1110.000366
S65F65delTTC---22AY.1170.000169
S65F65LTtcCtc22AY.1190.000071
S65F65FttCttT22AY.1190.000071
S65F65StTctCc22AY.130.000322
S65F65FttCttT22AY.200.000078
S65F65LTtcCtc22AY.230.000139
S65F65ITtcAtc22AY.250.000012
S65F65FttCttT22AY.260.000057
S65F65CtTctGc22AY.290.000032
S65F65delTTC---22AY.3.10.000171
S65F65YtTctAc22AY.390.000049
S65F65StTctCc22AY.430.000009
S65F65VTtcGtc22AY.430.000009
S65F65LttCttA12AY.430.000004
S65F65LTtcCtc12AY.430.000004
S65F65FttCttT22AY.50.000041
S65F65StTctCc22AY.50.000041
S65F65delTTC---22AY.520.001629
S65F65delTTC---22AY.540.000191
S65F65delTTC---22AY.60.000082
S65F65delTTC---22AY.7.20.001119
S65F65delTTC---22AY.710.00095
S65F65FttCttT22AY.930.000546
S65F65FttCttT22AY.940.000885
S65F65delTTC---22AY.940.000885
S65F65LTtcCtc22B.1.10.000036
S65F65HTTcCAc12B.1.1.280.000311
S65F65PTTCCCT12B.1.1.280.000311
S65F65ATTcGCc12B.1.1.280.000311
S65F65PTTcCCc12B.1.1.280.000311
S65F65HTTCCAT12B.1.1.280.000311
S65F65RTTcCGc12B.1.1.280.000311
S65F65GTTCGGT12B.1.1.280.000311
S65F65GTTcGGc12B.1.1.280.000311
S65F65RTTCCGT12B.1.1.280.000311
S65F65DTTcGAc12B.1.1.280.000311
S65F65ATTCGCT12B.1.1.280.000311
S65F65DTTCGAT12B.1.1.280.000311
S65F65ATTCGCG12B.1.1.330.000421
S65F65StTctCc12B.1.1.330.000421
S65F65ATTcGCc12B.1.1.330.000421
S65F65StTCtCG12B.1.1.330.000421
S65F65StTctCc22B.1.1.70.000002
S65F65delTTC---22B.1.177.810.000379
S65F65StTctCc22B.1.20.000018
S65F65FttCttT22B.1.2060.001631
S65F65StTctCc22B.1.2430.000139
S65F65FttCttT22B.1.2430.000139
S65F65delTTC---22B.1.2580.000133
S65F65FttCttT22B.1.258.30.00335
S65F65delTTC---22B.1.3510.000059
S65F65FttCttT22B.1.4270.000101
S65F65LTtcCtc12B.1.4290.000024
S65F65LttCttA12B.1.4290.000024
S65F65FttCttT22B.1.5070.022472
S65F65StTctCc22B.1.617.20.000008
S65F65GTTcGGc12P.20.000187
S65F65HTTcCAc12P.20.000187
S65F65ATTcGCc12P.20.000187
S65F65RTTcCGc12P.20.000187
S65F65HTTCCAT12P.20.000187
S65F65RTTCCGT12P.20.000187
S65F65DTTcGAc12P.20.000187
S65F65PTTcCCc12P.20.000187
S65F65DTTCGAT12P.20.000187
S65F65ATTCGCT12P.20.000187
S65F65PTTCCCT12P.20.000187
S65F65GTTCGGT12P.20.000187
S65F65delTTC---22R.10.00018
S65F65FttCttT110.055556
S65F65XtTCtAG11All0
S65F65ETTCGAA11All0
S65F65FttCttT11AU.10.001266
S65F65FttCttT11AY.1010.00049
S65F65LTtcCtc11AY.1020.000027
S65F65FttCttT11AY.1020.000027
S65F65VTtcGtc11AY.1020.000027
S65F65CtTctGc11AY.1030.000006
S65F65LttCttA11AY.1030.000006
S65F65delTTC---11AY.1050.000643
S65F65VTtcGtc11AY.1070.000466
S65F65LttCttG11AY.1100.000113
S65F65StTctCc11AY.1190.000035
S65F65ITtcAtc11AY.1190.000035
S65F65delTTC---11AY.140.000088
S65F65VTtCGtT11AY.230.00007
S65F65FttCttT11AY.230.00007
S65F65ITtcAtc11AY.230.00007
S65F65StTctCc11AY.23.10.000417
S65F65delTTC---11AY.240.000431
S65F65LttCttG11AY.250.000006
S65F65CtTctGc11AY.250.000006
S65F65del2TTC--N11AY.260.000028
S65F65delTTC---11AY.290.000016
S65F65VTtcGtc11AY.30.00001
S65F65StTctCc11AY.30.00001
S65F65CtTCtGT11AY.30.00001
S65F65LttCttA11AY.300.000396
S65F65VTtcGtc11AY.300.000396
S65F65delTTC---11AY.300.000396
S65F65delTTC---11AY.340.000097
S65F65FttCttT11AY.390.000025
S65F65FttCttT11AY.39.10.00004
S65F65LttCttA11AY.39.20.001541
S65F65delTTC---11AY.39.20.001541
S65F65StTctCc11AY.39.20.001541
S65F65del1Ttc-tc11AY.40.000002
S65F65YtTctAc11AY.40.000002
S65F65delTTC---11AY.4.20.000022
S65F65delTTC---11AY.4.2.10.000149
S65F65delTTC---11AY.4.40.000409
S65F65FttCttT11AY.4.50.000107
S65F65LttCttA11AY.4.50.000107
S65F65StTctCc11AY.420.00004
S65F65VTtcGtc11AY.420.00004
S65F65CtTctGc11AY.430.000004
S65F65StTctCc11AY.440.000006
S65F65FttCttT11AY.450.000122
S65F65StTctCc11AY.450.000122
S65F65FttCttT11AY.46.40.000165
S65F65delTTC---11AY.46.50.000198
S65F65delTTC---11AY.46.60.000072
S65F65LttCttA11AY.50.000021
S65F65VTtcGtc11AY.50.000021
S65F65delTTC---11AY.5.30.000337
S65F65delTTC---11AY.5.40.000277
S65F65FttCttT11AY.530.000288
S65F65LttCttG11AY.590.00053
S65F65delTTC---11AY.590.00053
S65F65YtTctAc11AY.590.00053
S65F65XtTCtAG11AY.590.00053
S65F65delTTC---11AY.600.000938
S65F65YtTctAc11AY.610.000105
S65F65FttCttT11AY.610.000105
S65F65ITtcAtc11AY.610.000105
S65F65YtTctAc11AY.620.000436
S65F65del1TtC-tN11AY.640.000595
S65F65delTTC---11AY.640.000595
S65F65del1tTCtC-11AY.670.000464
S65F65delTTC---11AY.670.000464
S65F65delTTC---11AY.680.000274
S65F65YtTctAc11AY.690.000187
S65F65CtTctGc11AY.690.000187
S65F65FttCttT11AY.7.10.000113
S65F65delTTC---11AY.700.000209
S65F65delTTC---11AY.720.001361
S65F65delTTC---11AY.730.000665
S65F65delTTC---11AY.740.000116
S65F65delTTC---11AY.840.000437
S65F65ETTCGAA11AY.850.000427
S65F65FttCttT11AY.850.000427
S65F65StTctCc11AY.90.000068
S65F65VTtcGtc11AY.90.000068
S65F65FttCttT11AY.90.000068
S65F65del2TTC--N11AY.90.000068
S65F65delTTC---11AY.920.000287
S65F65FttCttT11AY.960.002075
S65F65LTtcCtc11AY.980.000079
S65F65LTtcCtc11AY.98.10.000048
S65F65FttCttT11AY.990.001049
S65F65delTTC---11AY.990.001049
S65F65LTtcCtc11AY.99.20.000092
S65F65del1ttCtt-11AZ.20.000821
S65F65delTTC---11AZ.20.000821
S65F65del1ttCtt-11B.10.000009
S65F65StTctCc11B.10.000009
S65F65CtTctGc11B.10.000009
S65F65StTctCc11B.1.10.000018
S65F65RTTCAGG11B.1.10.000018
S65F65VTtcGtc11B.1.10.000018
S65F65delTTC---11B.1.1.1180.010204
S65F65delTTC---11B.1.1.1480.008772
S65F65FttCttT11B.1.1.1760.000439
S65F65ITtcAtc11B.1.1.1940.00495
S65F65delTTC---11B.1.1.2160.00089
S65F65FttCttT11B.1.1.2220.000204
S65F65LTtcCtc11B.1.1.2860.002899
S65F65delTTC---11B.1.1.3060.000438
S65F65delTTC---11B.1.1.3110.000358
S65F65delTTC---11B.1.1.3120.001912
S65F65delTTC---11B.1.1.3150.008475
S65F65FttCttT11B.1.1.3170.000412
S65F65delTTC---11B.1.1.3180.000302
S65F65LttCttG11B.1.1.330.000421
S65F65delTTC---11B.1.1.3610.045455
S65F65FttCttT11B.1.1.4160.000905
S65F65delTTC---11B.1.1.4340.000349
S65F65FttCttT11B.1.1.4340.000349
S65F65FttCttT11B.1.1.4640.001473
S65F65delTTC---11B.1.1.5230.001563
S65F65ITtCAtT11B.1.1.70.000001
S65F65del2TTc--c11B.1.1.70.000001
S65F65delTTC---11B.1.1.700.000341
S65F65FttCttT11B.1.110.30.000718
S65F65FttCttT11B.1.1260.001276
S65F65FttCttT11B.1.1600.000031
S65F65StTctCc11B.1.1600.000031
S65F65LTtcCtc11B.1.160.150.00495
S65F65StTctCc11B.1.160.260.002421
S65F65delTTC---11B.1.160.320.004292
S65F65del1ttCtt-11B.1.1770.000013
S65F65StTctCc11B.1.1770.000013
S65F65FttCttT11B.1.177.100.000878
S65F65delTTC---11B.1.177.150.000631
S65F65delTTC---11B.1.177.160.000664
S65F65delTTC---11B.1.177.170.000821
S65F65delTTC---11B.1.177.180.00116
S65F65delTTC---11B.1.177.210.000076
S65F65delTTC---11B.1.177.40.000211
S65F65delTTC---11B.1.177.510.004566
S65F65FttCttT11B.1.177.520.001757
S65F65delTTC---11B.1.177.560.000668
S65F65delTTC---11B.1.177.570.000281
S65F65LTtcCtc11B.1.177.70.000165
S65F65FttCttT11B.1.177.750.001041
S65F65delTTC---11B.1.177.770.000726
S65F65delTTC---11B.1.177.830.001481
S65F65VTtcGtc11B.1.177.860.000183
S65F65delTTC---11B.1.1790.003759
S65F65del2tTCt--11B.1.1790.003759
S65F65del1ttCtt-11B.1.20.000009
S65F65LTtcCtc11B.1.20.000009
S65F65FttCttT11B.1.2210.000071
S65F65StTctCc11B.1.221.30.000833
S65F65FttCttT11B.1.2370.004975
S65F65delTTC---11B.1.2390.001221
S65F65YtTctAc11B.1.2430.00007
S65F65YtTctAc11B.1.2580.000067
S65F65delTTC---11B.1.258.240.010753
S65F65FttCttT11B.1.351.30.000876
S65F65StTctCc11B.1.360.000146
S65F65FttCttT11B.1.36.70.004
S65F65FttCttT11B.1.3620.001541
S65F65delTTC---11B.1.3910.001127
S65F65delTTC---11B.1.4270.00005
S65F65LttCttA11B.1.4270.00005
S65F65FttCttT11B.1.4280.00102
S65F65CtTctGc11B.1.4700.001404
S65F65CtTctGc11B.1.4970.000315
S65F65YtTctAc11B.1.4990.00105
S65F65FttCttT11B.1.5170.000427
S65F65LttCttA11B.1.5250.000113
S65F65StTctCc11B.1.5260.000024
S65F65FttCttT11B.1.595.10.005848
S65F65delTTC---11B.1.5960.000087
S65F65FttCttT11B.1.596.10.009346
S65F65VTtcGtc11B.1.6090.000479
S65F65VTtCGtT11B.1.617.10.000129
S65F65VTtcGtc11B.1.617.20.000004
S65F65ITtcAtc11B.1.617.20.000004
S65F65CtTctGc11B.1.617.20.000004
S65F65YtTctAc11B.1.617.20.000004
S65F65delTTC---11B.1.6200.000946
S65F65delTTC---11B.1.6210.000089
S65F65delTTC---11B.1.6370.000073
S65F65FttCttT11B.230.002924
S65F65delTTC---11C.350.000774
S65F65delTTC---11C.36.30.000567
S65F65RTTCAGG11C.370.000116
S65F65LTtcCtc11C.370.000116
S65F65VTtcGtc11D.20.000075
S65F65delTTC---11P.1.10.10.00813
S65F65delTTC---11P.1.120.000484
S65F65StTctCc11P.1.140.000048
S65F65RTTcCGc11P.70.004367
S65F65FttCttT11P.70.004367
S65F65LTtcCtc11P.70.004367
S65F65CtTctGc11P.70.004367
S65F65delTTC---11Q.10.000126
S65F65del1Ttc-tc11Q.20.000613
S65F65delTTC---11U.30.003861