CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 641

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S641N641NsynaaTaaC933933123483-23485
S641N641SnonsynaAtaGt631631123483-23485
S641N641deldelAAT---9494123483-23485
S641N641KnonsynaaTaaA66500.75757623483-23485
S641N641KnonsynaaTaaG66160.24242423483-23485
S641N641InonsynaAtaTt4848123483-23485
S641N641YnonsynAatTat4646123483-23485
S641N641TnonsynaAtaCt2424123483-23485
S641N641DnonsynAatGat2121123483-23485
S641N641HnonsynAatCat88123483-23485
S641N641del1delAat-at870.87523483-23485
S641N641del1delAaT-aC810.12523483-23485
S641N641del2delAATG--11123483-23485
S641N641VnonsynAAtGTt11123483-23485

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S641N641NaaTaaC933933All0.000178
S641N641SaAtaGt631631All0.000121
S641N641NaaTaaC303303B.1.1.70.000271
S641N641SaAtaGt236236C.36.10.979253
S641N641SaAtaGt231231B.1.1.70.000207
S641N641NaaTaaC223223AY.40.000347
S641N641NaaTaaC104104B.1.617.20.000392
S641N641delAAT---9494All0.000018
S641N641NaaTaaC9292B.1.4290.002165
S641N641KaaTaaA5066All0.00001
S641N641KaaTaaG1666All0.000003
S641N641IaAtaTt4848All0.000009
S641N641YAatTat4646All0.000009
S641N641NaaTaaC2929AY.1020.000769
S641N641NaaTaaC2828AY.440.00017
S641N641KaaTaaA2025B.1.1.70.000018
S641N641KaaTaaG525B.1.1.70.000004
S641N641TaAtaCt2424All0.000005
S641N641KaaTaaA2324B.1.20.000203
S641N641KaaTaaG124B.1.20.000009
S641N641DAatGat2121All0.000004
S641N641delAAT---2121B.1.1.700.007162
S641N641SaAtaGt2020AY.230.001395
S641N641SaAtaGt2020AY.430.000089
S641N641IaAtaTt2020B.1.1.70.000018
S641N641SaAtaGt1919AY.40.00003
S641N641NaaTaaC1919Q.70.021111
S641N641delAAT---1616AY.40.000025
S641N641SaAtaGt1515B.1.20.000132
S641N641YAatTat1313AY.250.000078
S641N641NaaTaaC1212AY.1030.000075
S641N641SaAtaGt1212AY.60.000494
S641N641NaaTaaC1111B.1.1.100.012263
S641N641NaaTaaC1111B.1.4990.011555
S641N641YAatTat99B.1.1.70.000008
S641N641NaaTaaC99B.1.2580.000599
S641N641SaAtaGt99C.360.008197
S641N641HAatCat88All0.000002
S641N641del1Aat-at78All0.000001
S641N641del1AaT-aC18All0
S641N641NaaTaaC88B.10.000073
S641N641NaaTaaC77AY.390.000173
S641N641NaaTaaC77AY.50.000145
S641N641delAAT---77B.1.1.70.000006
S641N641SaAtaGt77B.1.2580.000466
S641N641NaaTaaC66AY.640.003571
S641N641SaAtaGt55AY.1190.000177
S641N641delAAT---55AY.430.000022
S641N641DAatGat55AY.440.00003
S641N641SaAtaGt55B.1.10.000091
S641N641delAAT---55C.80.022321
S641N641NaaTaaC55P.1.140.000239
S641N641HAatCat44AY.1000.000184
S641N641SaAtaGt44AY.1180.000251
S641N641NaaTaaC44AY.1200.000149
S641N641TaAtaCt44AY.30.00004
S641N641NaaTaaC44AY.330.000267
S641N641YAatTat44AY.430.000018
S641N641NaaTaaC44AY.450.000487
S641N641SaAtaGt44B.1.1.10.001307
S641N641delAAT---44B.1.2430.000278
S641N641SaAtaGt44B.1.617.20.000015
S641N641TaAtaCt44Q.70.004444
S641N641KaaTaaA330.166667
S641N641NaaTaaC33AY.1000.000138
S641N641delAAT---33AY.250.000018
S641N641KaaTaaA23AY.30.00002
S641N641KaaTaaG13AY.30.00001
S641N641DAatGat33AY.320.001597
S641N641IaAtaTt33AY.39.10.000119
S641N641TaAtaCt33AY.440.000018
S641N641IaAtaTt33AY.440.000018
S641N641SaAtaGt33AY.50.000062
S641N641NaaTaaC33AY.7.20.001678
S641N641del1Aat-at33B.1.10.000054
S641N641TaAtaCt33B.1.1.70.000003
S641N641delAAT---33B.1.1600.000094
S641N641KaaTaaG33B.1.617.20.000011
S641N641HAatCat33B.1.617.20.000011
S641N641KaaTaaG22AY.1030.000012
S641N641delAAT---22AY.1170.000169
S641N641YAatTat22AY.200.000078
S641N641NaaTaaC22AY.250.000012
S641N641IaAtaTt22AY.250.000012
S641N641delAAT---22AY.290.000032
S641N641IaAtaTt22AY.30.00002
S641N641SaAtaGt22AY.30.00002
S641N641delAAT---22AY.390.000049
S641N641SaAtaGt22AY.390.000049
S641N641IaAtaTt22AY.430.000009
S641N641NaaTaaC22AY.430.000009
S641N641SaAtaGt22AY.46.60.000144
S641N641NaaTaaC22AY.610.00021
S641N641SaAtaGt22AY.980.000158
S641N641SaAtaGt22B.10.000018
S641N641delAAT---22B.10.000018
S641N641NaaTaaC22B.1.10.000036
S641N641YAatTat22B.1.1.5180.012658
S641N641SaAtaGt22B.1.1.5230.003125
S641N641YAatTat22B.1.1470.001512
S641N641NaaTaaC22B.1.1770.000026
S641N641SaAtaGt22B.1.1770.000026
S641N641NaaTaaC22B.1.177.90.002663
S641N641delAAT---22B.1.20.000018
S641N641TaAtaCt22B.1.20.000018
S641N641NaaTaaC22B.1.20.000018
S641N641NaaTaaC22B.1.3510.000059
S641N641delAAT---22B.1.4040.002604
S641N641delAAT---22B.1.5250.000226
S641N641NaaTaaC22B.1.5650.001621
S641N641del1Aat-at22B.1.617.20.000008
S641N641YAatTat22B.1.617.20.000008
S641N641NaaTaaC22B.1.6210.000177
S641N641SaAtaGt22B.1.6210.000177
S641N641SaAtaGt22P.10.000032
S641N641NaaTaaC22P.10.000032
S641N641del2AATG--11All0
S641N641VAAtGTt11All0
S641N641TaAtaCt11AY.100.00053
S641N641NaaTaaC11AY.100.00053
S641N641SaAtaGt11AY.1000.000046
S641N641SaAtaGt11AY.1020.000027
S641N641YAatTat11AY.1020.000027
S641N641DAatGat11AY.1030.000006
S641N641delAAT---11AY.1030.000006
S641N641del1Aat-at11AY.1060.000335
S641N641YAatTat11AY.1110.000183
S641N641SaAtaGt11AY.1130.000142
S641N641SaAtaGt11AY.116.10.000311
S641N641KaaTaaG11AY.1190.000035
S641N641DAatGat11AY.1200.000037
S641N641SaAtaGt11AY.1200.000037
S641N641delAAT---11AY.200.000039
S641N641NaaTaaC11AY.230.00007
S641N641DAatGat11AY.240.000431
S641N641SaAtaGt11AY.250.000006
S641N641KaaTaaG11AY.250.000006
S641N641SaAtaGt11AY.260.000028
S641N641DAatGat11AY.260.000028
S641N641IaAtaTt11AY.290.000016
S641N641SaAtaGt11AY.290.000016
S641N641TaAtaCt11AY.290.000016
S641N641SaAtaGt11AY.330.000067
S641N641YAatTat11AY.330.000067
S641N641delAAT---11AY.370.000316
S641N641delAAT---11AY.380.000499
S641N641NaaTaaC11AY.380.000499
S641N641TaAtaCt11AY.40.000002
S641N641DAatGat11AY.40.000002
S641N641KaaTaaG11AY.40.000002
S641N641IaAtaTt11AY.40.000002
S641N641DAatGat11AY.4.20.000022
S641N641SaAtaGt11AY.4.2.10.000149
S641N641KaaTaaA11AY.410.000294
S641N641del2AATG--11AY.430.000004
S641N641SaAtaGt11AY.440.000006
S641N641YAatTat11AY.440.000006
S641N641DAatGat11AY.450.000122
S641N641delAAT---11AY.46.60.000072
S641N641SaAtaGt11AY.470.000031
S641N641NaaTaaC11AY.470.000031
S641N641NaaTaaC11AY.480.000465
S641N641delAAT---11AY.50.000021
S641N641IaAtaTt11AY.5.40.000277
S641N641delAAT---11AY.60.000041
S641N641DAatGat11AY.640.000595
S641N641YAatTat11AY.680.000274
S641N641IaAtaTt11AY.800.001129
S641N641NaaTaaC11AY.840.000437
S641N641SaAtaGt11AY.90.000068
S641N641NaaTaaC11AY.90.000068
S641N641DAatGat11AY.9.20.000037
S641N641del1Aat-at11AY.980.000079
S641N641IaAtaTt11B.10.000009
S641N641YAatTat11B.10.000009
S641N641TaAtaCt11B.10.000009
S641N641YAatTat11B.1.10.000018
S641N641IaAtaTt11B.1.10.000018
S641N641delAAT---11B.1.10.000018
S641N641IaAtaTt11B.1.1.100.001115
S641N641IaAtaTt11B.1.1.250.000569
S641N641YAatTat11B.1.1.2970.002237
S641N641IaAtaTt11B.1.1.3180.000302
S641N641NaaTaaC11B.1.1.3180.000302
S641N641SaAtaGt11B.1.1.390.00051
S641N641delAAT---11B.1.1.4340.000349
S641N641IaAtaTt11B.1.1.470.005348
S641N641VAAtGTt11B.1.1.70.000001
S641N641HAatCat11B.1.1.70.000001
S641N641IaAtaTt11B.1.1600.000031
S641N641del1AaT-aC11B.1.1600.000031
S641N641SaAtaGt11B.1.177.120.000152
S641N641SaAtaGt11B.1.177.430.001477
S641N641YAatTat11B.1.177.520.001757
S641N641TaAtaCt11B.1.177.80.000752
S641N641delAAT---11B.1.1790.003759
S641N641IaAtaTt11B.1.20.000009
S641N641IaAtaTt11B.1.2320.000537
S641N641DAatGat11B.1.2340.000132
S641N641NaaTaaC11B.1.2390.001221
S641N641NaaTaaC11B.1.2430.00007
S641N641NaaTaaC11B.1.258.30.001675
S641N641SaAtaGt11B.1.360.000146
S641N641NaaTaaC11B.1.360.000146
S641N641NaaTaaC11B.1.4270.00005
S641N641KaaTaaG11B.1.4560.003268
S641N641YAatTat11B.1.4590.004082
S641N641NaaTaaC11B.1.466.20.000391
S641N641DAatGat11B.1.466.20.000391
S641N641YAatTat11B.1.4990.00105
S641N641delAAT---11B.1.5260.000024
S641N641YAatTat11B.1.5260.000024
S641N641NaaTaaC11B.1.5300.007143
S641N641delAAT---11B.1.5680.001111
S641N641TaAtaCt11B.1.5820.000491
S641N641DAatGat11B.1.5960.000087
S641N641NaaTaaC11B.1.6090.000479
S641N641TaAtaCt11B.1.617.10.000129
S641N641delAAT---11B.1.617.20.000004
S641N641IaAtaTt11B.1.617.20.000004
S641N641DAatGat11B.1.617.20.000004
S641N641TaAtaCt11B.1.619.10.000641
S641N641delAAT---11B.1.6200.000946
S641N641IaAtaTt11B.1.6250.002353
S641N641NaaTaaC11C.260.007353
S641N641SaAtaGt11C.370.000116
S641N641NaaTaaC11D.20.000075
S641N641SaAtaGt11N.50.001767
S641N641delAAT---11P.10.000016
S641N641KaaTaaA11P.10.000016
S641N641IaAtaTt11P.10.000016
S641N641NaaTaaC11P.1.170.000162
S641N641delAAT---11P.20.000187